AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1448690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1448690 MtrunA17_Chr2g0285451 100.000 69 0 0 37 105 1 69 1.58e-44 138
Msa1448690 MtrunA17_Chr4g0033761 94.203 69 4 0 37 105 1 69 4.16e-42 132
Msa1448690 MtrunA17_Chr8g0376751 89.855 69 7 0 37 105 1 69 1.03e-39 126
Msa1448690 MtrunA17_Chr7g0216191 86.957 69 9 0 37 105 1 69 8.16e-37 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1448690 AT2G43460.1 91.304 69 6 0 37 105 1 69 1.20e-40 129
Msa1448690 AT3G59540.1 91.304 69 6 0 37 105 1 69 1.20e-40 129

Find 39 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACGAAAACGTTTAGGATT+AGG 0.264287 tig0032298:+14301 Msa1448690:CDS
TTCTCTCCATTTCATCCATT+TGG 0.273233 tig0032298:-16291 None:intergenic
TAAGCAAATCAACGAGATTA+AGG 0.294566 tig0032298:+15403 Msa1448690:CDS
TTCAAGACCTTTAGAGGTAT+TGG 0.299687 tig0032298:+16144 Msa1448690:exon
TTTGTTTCTGTGATAAGTTT+TGG 0.304054 tig0032298:+16467 Msa1448690:three_prime_UTR
ATCTCTCCAAATGGATGAAA+TGG 0.308166 tig0032298:+16285 Msa1448690:three_prime_UTR
TACGAAAACGTTTAGGATTA+GGG 0.309907 tig0032298:+14302 Msa1448690:CDS
TGAGTGTTCAAGACCTTTAG+AGG 0.372905 tig0032298:+16138 Msa1448690:CDS
AAAGAACTACGAAAACGTTT+AGG 0.375594 tig0032298:+14295 Msa1448690:CDS
TGACCTCGCATCCTTCCTTC+TGG 0.376233 tig0032298:-15441 None:intergenic
TTGAGATTGTAGCCAGGAAA+TGG 0.416064 tig0032298:+16349 Msa1448690:three_prime_UTR
TGGAGAGATATAGATCCATT+TGG 0.428839 tig0032298:-16271 None:intergenic
TGGATCTATATCTCTCCAAA+TGG 0.457727 tig0032298:+16276 Msa1448690:three_prime_UTR
TTCTCATCCAATACCTCTAA+AGG 0.468641 tig0032298:-16151 None:intergenic
CTCACTGCCTCTTGCAACAA+TGG 0.469145 tig0032298:+14362 Msa1448690:CDS
GAGTTAAGATCCTCTCCATT+TGG 0.475407 tig0032298:-16316 None:intergenic
AGTGAGAATCAAGAGGAGTA+AGG 0.485084 tig0032298:+15463 Msa1448690:CDS
AGGTATTGGATGAGAAATCA+AGG 0.495732 tig0032298:+16158 Msa1448690:three_prime_UTR
TAAGGATGTGGTTAAGTTCA+AGG 0.499148 tig0032298:+15481 Msa1448690:CDS
AAGGGTAAAGATCCTCCAAA+TGG 0.506011 tig0032298:+16256 Msa1448690:three_prime_UTR
GAAATGGAGAGAATACCAAA+TGG 0.517514 tig0032298:+16301 Msa1448690:three_prime_UTR
ATGTGGTTAAGTTCAAGGTC+AGG 0.518401 tig0032298:+15486 Msa1448690:CDS
AATCAAGAGGAGTAAGGATG+TGG 0.526249 tig0032298:+15469 Msa1448690:CDS
ACTAAGTGTGTAGAGGTACT+TGG 0.532503 tig0032298:-15513 None:intergenic
TTAATCTCGTTGATTTGCTT+AGG 0.534022 tig0032298:-15401 None:intergenic
CCTTCTCACTGCCAGAAGGA+AGG 0.537276 tig0032298:+15430 Msa1448690:CDS
TTGAAGCAATCACTTCCTCC+AGG 0.552717 tig0032298:+15563 Msa1448690:CDS
AGAGATATAGATCCATTTGG+AGG 0.564353 tig0032298:-16268 None:intergenic
CCTTCCTTCTGGCAGTGAGA+AGG 0.565796 tig0032298:-15430 None:intergenic
TTTGTGAGTTGATCTTGTAA+GGG 0.574402 tig0032298:+16238 Msa1448690:three_prime_UTR
AAAATCACCATTGTTGCAAG+AGG 0.583889 tig0032298:-14369 None:intergenic
ATTTCCTTCTCACTGCCAGA+AGG 0.584170 tig0032298:+15426 Msa1448690:CDS
TGTAACTTGAGATTGTAGCC+AGG 0.592891 tig0032298:+16343 Msa1448690:three_prime_UTR
CGAGGTCAGTGAGAATCAAG+AGG 0.618562 tig0032298:+15456 Msa1448690:CDS
GGAGAGAATACCAAATGGAG+AGG 0.623091 tig0032298:+16306 Msa1448690:three_prime_UTR
CTGCCAGAAGGAAGGATGCG+AGG 0.654921 tig0032298:+15438 Msa1448690:CDS
CAAACACACTAAGTGTGTAG+AGG 0.657075 tig0032298:-15520 None:intergenic
TTGGATGAGAAATCAAGGAG+AGG 0.695988 tig0032298:+16163 Msa1448690:three_prime_UTR
TTAGGATTAGGGTTTATCAG+CGG 0.714795 tig0032298:+14313 Msa1448690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAATAAAAATATAAAAT+GGG - tig0032298:14531-14550 None:intergenic 0.0%
!! AAATTAATAAAAATATAAAA+TGG - tig0032298:14532-14551 None:intergenic 0.0%
!! AATTAATAAAAATATAAAAT+GGG - tig0032298:14531-14550 None:intergenic 0.0%
!! AAATTAATAAAAATATAAAA+TGG - tig0032298:14532-14551 None:intergenic 0.0%
!! AATTGAGAAATTAGAAAAAA+GGG - tig0032298:14404-14423 None:intergenic 15.0%
!!! TATGTTTCTTTTTTGTTAAT+TGG + tig0032298:14469-14488 Msa1448690:intron 15.0%
!!! TGTTATAAAGTCTATTTTTT+CGG + tig0032298:14573-14592 Msa1448690:intron 15.0%
!! AACAATAACAAACAAAAATT+TGG - tig0032298:15306-15325 None:intergenic 15.0%
!!! ATTTTATATTTATTTAGCCT+AGG + tig0032298:15611-15630 Msa1448690:intron 15.0%
!!! ATTTTTAACTCAATTTATCT+TGG + tig0032298:15798-15817 Msa1448690:intron 15.0%
!! AATTGAGAAATTAGAAAAAA+GGG - tig0032298:14404-14423 None:intergenic 15.0%
!!! TATGTTTCTTTTTTGTTAAT+TGG + tig0032298:14469-14488 Msa1448690:intron 15.0%
!!! TGTTATAAAGTCTATTTTTT+CGG + tig0032298:14573-14592 Msa1448690:intron 15.0%
!! AACAATAACAAACAAAAATT+TGG - tig0032298:15306-15325 None:intergenic 15.0%
!!! ATTTTATATTTATTTAGCCT+AGG + tig0032298:15611-15630 Msa1448690:intron 15.0%
!!! ATTTTTAACTCAATTTATCT+TGG + tig0032298:15798-15817 Msa1448690:intron 15.0%
!! ATTGAGAAATTAGAAAAAAG+GGG - tig0032298:14403-14422 None:intergenic 20.0%
!! CAATTGAGAAATTAGAAAAA+AGG - tig0032298:14405-14424 None:intergenic 20.0%
!!! TGATTAATTGATTTGTTAAG+AGG + tig0032298:14676-14695 Msa1448690:intron 20.0%
!!! GATTAATTGATTTGTTAAGA+GGG + tig0032298:14677-14696 Msa1448690:intron 20.0%
!! TAAATACTCATGTTAGATTT+AGG + tig0032298:14725-14744 Msa1448690:intron 20.0%
!!! CATTATTTTTATCATGTCAA+GGG + tig0032298:15081-15100 Msa1448690:intron 20.0%
!! TAGTTCAATTGTCTATATTT+AGG + tig0032298:15650-15669 Msa1448690:intron 20.0%
!! TTACAATATTTGGTTACTAT+TGG - tig0032298:15959-15978 None:intergenic 20.0%
!! CTTTATCATGTTACAATATT+TGG - tig0032298:15969-15988 None:intergenic 20.0%
!!! TTCCTTTTGGAAAATTAAAA+TGG + tig0032298:16025-16044 Msa1448690:intron 20.0%
!!! ATCCATTTTAATTTTCCAAA+AGG - tig0032298:16030-16049 None:intergenic 20.0%
!! AAATTGATATGGTTAAAGAA+GGG - tig0032298:16061-16080 None:intergenic 20.0%
!! ATTGAGAAATTAGAAAAAAG+GGG - tig0032298:14403-14422 None:intergenic 20.0%
!! CAATTGAGAAATTAGAAAAA+AGG - tig0032298:14405-14424 None:intergenic 20.0%
!!! TGATTAATTGATTTGTTAAG+AGG + tig0032298:14676-14695 Msa1448690:intron 20.0%
!!! GATTAATTGATTTGTTAAGA+GGG + tig0032298:14677-14696 Msa1448690:intron 20.0%
!! TAAATACTCATGTTAGATTT+AGG + tig0032298:14725-14744 Msa1448690:intron 20.0%
!!! CATTATTTTTATCATGTCAA+GGG + tig0032298:15081-15100 Msa1448690:intron 20.0%
!! TAGTTCAATTGTCTATATTT+AGG + tig0032298:15650-15669 Msa1448690:intron 20.0%
!! TTACAATATTTGGTTACTAT+TGG - tig0032298:15959-15978 None:intergenic 20.0%
!! CTTTATCATGTTACAATATT+TGG - tig0032298:15969-15988 None:intergenic 20.0%
!!! TTCCTTTTGGAAAATTAAAA+TGG + tig0032298:16025-16044 Msa1448690:intron 20.0%
!!! ATCCATTTTAATTTTCCAAA+AGG - tig0032298:16030-16049 None:intergenic 20.0%
!! AAATTGATATGGTTAAAGAA+GGG - tig0032298:16061-16080 None:intergenic 20.0%
! TTGAGAAATTAGAAAAAAGG+GGG - tig0032298:14402-14421 None:intergenic 25.0%
!! ATTTGCGTTGTGATATTTTA+TGG + tig0032298:15041-15060 Msa1448690:intron 25.0%
! CCTTGACATGATAAAAATAA+TGG - tig0032298:15083-15102 None:intergenic 25.0%
!!! CCATTATTTTTATCATGTCA+AGG + tig0032298:15080-15099 Msa1448690:intron 25.0%
! TTAAACTGTTGATACAAACA+GGG - tig0032298:15676-15695 None:intergenic 25.0%
! ATTAAACTGTTGATACAAAC+AGG - tig0032298:15677-15696 None:intergenic 25.0%
! TCAAATAAGTCAATTCAATC+CGG + tig0032298:15925-15944 Msa1448690:intron 25.0%
! CAAATTGATATGGTTAAAGA+AGG - tig0032298:16062-16081 None:intergenic 25.0%
! ACATATAGCACAAATTGATA+TGG - tig0032298:16072-16091 None:intergenic 25.0%
!! TGAAAGATTTTTATGTCTGA+TGG + tig0032298:16385-16404 Msa1448690:three_prime_UTR 25.0%
!!! ATGGAATATTTTAGTGCTAT+GGG + tig0032298:16404-16423 Msa1448690:three_prime_UTR 25.0%
!!! TTTGTTTCTGTGATAAGTTT+TGG + tig0032298:16467-16486 Msa1448690:three_prime_UTR 25.0%
! TTGAGAAATTAGAAAAAAGG+GGG - tig0032298:14402-14421 None:intergenic 25.0%
!! ATTTGCGTTGTGATATTTTA+TGG + tig0032298:15041-15060 Msa1448690:intron 25.0%
! CCTTGACATGATAAAAATAA+TGG - tig0032298:15083-15102 None:intergenic 25.0%
!!! CCATTATTTTTATCATGTCA+AGG + tig0032298:15080-15099 Msa1448690:intron 25.0%
! TTAAACTGTTGATACAAACA+GGG - tig0032298:15676-15695 None:intergenic 25.0%
! ATTAAACTGTTGATACAAAC+AGG - tig0032298:15677-15696 None:intergenic 25.0%
! TCAAATAAGTCAATTCAATC+CGG + tig0032298:15925-15944 Msa1448690:intron 25.0%
! CAAATTGATATGGTTAAAGA+AGG - tig0032298:16062-16081 None:intergenic 25.0%
! ACATATAGCACAAATTGATA+TGG - tig0032298:16072-16091 None:intergenic 25.0%
!! TGAAAGATTTTTATGTCTGA+TGG + tig0032298:16385-16404 Msa1448690:three_prime_UTR 25.0%
!!! ATGGAATATTTTAGTGCTAT+GGG + tig0032298:16404-16423 Msa1448690:three_prime_UTR 25.0%
!!! TTTGTTTCTGTGATAAGTTT+TGG + tig0032298:16467-16486 Msa1448690:three_prime_UTR 25.0%
AAAGAACTACGAAAACGTTT+AGG + tig0032298:14295-14314 Msa1448690:CDS 30.0%
! TACGAAAACGTTTAGGATTA+GGG + tig0032298:14302-14321 Msa1448690:CDS 30.0%
AAAAATAAGCCAATCGAAAC+GGG - tig0032298:14752-14771 None:intergenic 30.0%
CAAAAATAAGCCAATCGAAA+CGG - tig0032298:14753-14772 None:intergenic 30.0%
AAAAATAAGTCGATCCAAAC+AGG + tig0032298:14928-14947 Msa1448690:intron 30.0%
!! CTAAAATTCTAAGACCTGTT+TGG - tig0032298:14945-14964 None:intergenic 30.0%
! CAAACAGGTCTTAGAATTTT+AGG + tig0032298:14943-14962 Msa1448690:intron 30.0%
AATAAGCTGAAAACAGTTGA+TGG - tig0032298:15143-15162 None:intergenic 30.0%
ATTAAGCTATAAGCCATTCT+GGG - tig0032298:15177-15196 None:intergenic 30.0%
TATTAAGCTATAAGCCATTC+TGG - tig0032298:15178-15197 None:intergenic 30.0%
!! TTAATCTCGTTGATTTGCTT+AGG - tig0032298:15404-15423 None:intergenic 30.0%
TAAGCAAATCAACGAGATTA+AGG + tig0032298:15403-15422 Msa1448690:CDS 30.0%
AATTGAACTAGTTGAACTGT+TGG - tig0032298:15640-15659 None:intergenic 30.0%
CTTATTTGAGGAACATATCT+TGG - tig0032298:15914-15933 None:intergenic 30.0%
! GGATTGAATTGACTTATTTG+AGG - tig0032298:15926-15945 None:intergenic 30.0%
TTTGGTTACTATTGGCAAAA+GGG - tig0032298:15951-15970 None:intergenic 30.0%
ATTTGGTTACTATTGGCAAA+AGG - tig0032298:15952-15971 None:intergenic 30.0%
GATAAAGTTAACATTAGCAC+TGG + tig0032298:15982-16001 Msa1448690:intron 30.0%
! TTTCTTCTATGTCTTCCTTT+TGG + tig0032298:16012-16031 Msa1448690:intron 30.0%
!!! TTTTGTGAGTTGATCTTGTA+AGG + tig0032298:16237-16256 Msa1448690:three_prime_UTR 30.0%
!! TTTGTGAGTTGATCTTGTAA+GGG + tig0032298:16238-16257 Msa1448690:three_prime_UTR 30.0%
TCATTACAAAAACCATTTCC+TGG - tig0032298:16364-16383 None:intergenic 30.0%
!!! GATGGAATATTTTAGTGCTA+TGG + tig0032298:16403-16422 Msa1448690:three_prime_UTR 30.0%
AAAGAACTACGAAAACGTTT+AGG + tig0032298:14295-14314 Msa1448690:CDS 30.0%
! TACGAAAACGTTTAGGATTA+GGG + tig0032298:14302-14321 Msa1448690:CDS 30.0%
AAAAATAAGCCAATCGAAAC+GGG - tig0032298:14752-14771 None:intergenic 30.0%
CAAAAATAAGCCAATCGAAA+CGG - tig0032298:14753-14772 None:intergenic 30.0%
AAAAATAAGTCGATCCAAAC+AGG + tig0032298:14928-14947 Msa1448690:intron 30.0%
!! CTAAAATTCTAAGACCTGTT+TGG - tig0032298:14945-14964 None:intergenic 30.0%
! CAAACAGGTCTTAGAATTTT+AGG + tig0032298:14943-14962 Msa1448690:intron 30.0%
AATAAGCTGAAAACAGTTGA+TGG - tig0032298:15143-15162 None:intergenic 30.0%
ATTAAGCTATAAGCCATTCT+GGG - tig0032298:15177-15196 None:intergenic 30.0%
TATTAAGCTATAAGCCATTC+TGG - tig0032298:15178-15197 None:intergenic 30.0%
!! TTAATCTCGTTGATTTGCTT+AGG - tig0032298:15404-15423 None:intergenic 30.0%
TAAGCAAATCAACGAGATTA+AGG + tig0032298:15403-15422 Msa1448690:CDS 30.0%
AATTGAACTAGTTGAACTGT+TGG - tig0032298:15640-15659 None:intergenic 30.0%
CTTATTTGAGGAACATATCT+TGG - tig0032298:15914-15933 None:intergenic 30.0%
! GGATTGAATTGACTTATTTG+AGG - tig0032298:15926-15945 None:intergenic 30.0%
TTTGGTTACTATTGGCAAAA+GGG - tig0032298:15951-15970 None:intergenic 30.0%
ATTTGGTTACTATTGGCAAA+AGG - tig0032298:15952-15971 None:intergenic 30.0%
GATAAAGTTAACATTAGCAC+TGG + tig0032298:15982-16001 Msa1448690:intron 30.0%
! TTTCTTCTATGTCTTCCTTT+TGG + tig0032298:16012-16031 Msa1448690:intron 30.0%
!!! TTTTGTGAGTTGATCTTGTA+AGG + tig0032298:16237-16256 Msa1448690:three_prime_UTR 30.0%
!! TTTGTGAGTTGATCTTGTAA+GGG + tig0032298:16238-16257 Msa1448690:three_prime_UTR 30.0%
TCATTACAAAAACCATTTCC+TGG - tig0032298:16364-16383 None:intergenic 30.0%
!!! GATGGAATATTTTAGTGCTA+TGG + tig0032298:16403-16422 Msa1448690:three_prime_UTR 30.0%
! CTACGAAAACGTTTAGGATT+AGG + tig0032298:14301-14320 Msa1448690:CDS 35.0%
TTAGGATTAGGGTTTATCAG+CGG + tig0032298:14313-14332 Msa1448690:CDS 35.0%
AAAATCACCATTGTTGCAAG+AGG - tig0032298:14372-14391 None:intergenic 35.0%
ATTATTCGATGCTAAGAAGC+TGG + tig0032298:14610-14629 Msa1448690:intron 35.0%
TTATTCGATGCTAAGAAGCT+GGG + tig0032298:14611-14630 Msa1448690:intron 35.0%
TAAGGATGTGGTTAAGTTCA+AGG + tig0032298:15481-15500 Msa1448690:CDS 35.0%
TAAACACTTGTGAGACTGTT+TGG - tig0032298:15889-15908 None:intergenic 35.0%
! ACAATGCTCTTGATGTTTTC+AGG + tig0032298:16113-16132 Msa1448690:intron 35.0%
! TTCAAGACCTTTAGAGGTAT+TGG + tig0032298:16144-16163 Msa1448690:exon 35.0%
TTCTCATCCAATACCTCTAA+AGG - tig0032298:16154-16173 None:intergenic 35.0%
!! AGGTATTGGATGAGAAATCA+AGG + tig0032298:16158-16177 Msa1448690:three_prime_UTR 35.0%
AGAGATATAGATCCATTTGG+AGG - tig0032298:16271-16290 None:intergenic 35.0%
TGGAGAGATATAGATCCATT+TGG - tig0032298:16274-16293 None:intergenic 35.0%
TGGATCTATATCTCTCCAAA+TGG + tig0032298:16276-16295 Msa1448690:three_prime_UTR 35.0%
ATCTCTCCAAATGGATGAAA+TGG + tig0032298:16285-16304 Msa1448690:three_prime_UTR 35.0%
TTCTCTCCATTTCATCCATT+TGG - tig0032298:16294-16313 None:intergenic 35.0%
GAAATGGAGAGAATACCAAA+TGG + tig0032298:16301-16320 Msa1448690:three_prime_UTR 35.0%
! CTACGAAAACGTTTAGGATT+AGG + tig0032298:14301-14320 Msa1448690:CDS 35.0%
TTAGGATTAGGGTTTATCAG+CGG + tig0032298:14313-14332 Msa1448690:CDS 35.0%
AAAATCACCATTGTTGCAAG+AGG - tig0032298:14372-14391 None:intergenic 35.0%
ATTATTCGATGCTAAGAAGC+TGG + tig0032298:14610-14629 Msa1448690:intron 35.0%
TTATTCGATGCTAAGAAGCT+GGG + tig0032298:14611-14630 Msa1448690:intron 35.0%
TAAGGATGTGGTTAAGTTCA+AGG + tig0032298:15481-15500 Msa1448690:CDS 35.0%
TAAACACTTGTGAGACTGTT+TGG - tig0032298:15889-15908 None:intergenic 35.0%
! ACAATGCTCTTGATGTTTTC+AGG + tig0032298:16113-16132 Msa1448690:intron 35.0%
! TTCAAGACCTTTAGAGGTAT+TGG + tig0032298:16144-16163 Msa1448690:exon 35.0%
TTCTCATCCAATACCTCTAA+AGG - tig0032298:16154-16173 None:intergenic 35.0%
!! AGGTATTGGATGAGAAATCA+AGG + tig0032298:16158-16177 Msa1448690:three_prime_UTR 35.0%
AGAGATATAGATCCATTTGG+AGG - tig0032298:16271-16290 None:intergenic 35.0%
TGGAGAGATATAGATCCATT+TGG - tig0032298:16274-16293 None:intergenic 35.0%
TGGATCTATATCTCTCCAAA+TGG + tig0032298:16276-16295 Msa1448690:three_prime_UTR 35.0%
ATCTCTCCAAATGGATGAAA+TGG + tig0032298:16285-16304 Msa1448690:three_prime_UTR 35.0%
TTCTCTCCATTTCATCCATT+TGG - tig0032298:16294-16313 None:intergenic 35.0%
GAAATGGAGAGAATACCAAA+TGG + tig0032298:16301-16320 Msa1448690:three_prime_UTR 35.0%
CTAAGAAGCTGGGTTAAGTT+AGG + tig0032298:14621-14640 Msa1448690:intron 40.0%
AGTGAGAATCAAGAGGAGTA+AGG + tig0032298:15463-15482 Msa1448690:CDS 40.0%
AATCAAGAGGAGTAAGGATG+TGG + tig0032298:15469-15488 Msa1448690:CDS 40.0%
ATGTGGTTAAGTTCAAGGTC+AGG + tig0032298:15486-15505 Msa1448690:CDS 40.0%
!! ACTAAGTGTGTAGAGGTACT+TGG - tig0032298:15516-15535 None:intergenic 40.0%
CAAACACACTAAGTGTGTAG+AGG - tig0032298:15523-15542 None:intergenic 40.0%
TGTAAATCCAACTACAGACC+TGG - tig0032298:15584-15603 None:intergenic 40.0%
AGTTGAACTGTTGGTATCCT+AGG - tig0032298:15631-15650 None:intergenic 40.0%
TGAGTGTTCAAGACCTTTAG+AGG + tig0032298:16138-16157 Msa1448690:CDS 40.0%
TTGGATGAGAAATCAAGGAG+AGG + tig0032298:16163-16182 Msa1448690:three_prime_UTR 40.0%
AAGGGTAAAGATCCTCCAAA+TGG + tig0032298:16256-16275 Msa1448690:three_prime_UTR 40.0%
GAGTTAAGATCCTCTCCATT+TGG - tig0032298:16319-16338 None:intergenic 40.0%
TGTAACTTGAGATTGTAGCC+AGG + tig0032298:16343-16362 Msa1448690:three_prime_UTR 40.0%
TTGAGATTGTAGCCAGGAAA+TGG + tig0032298:16349-16368 Msa1448690:three_prime_UTR 40.0%
CTAAGAAGCTGGGTTAAGTT+AGG + tig0032298:14621-14640 Msa1448690:intron 40.0%
AGTGAGAATCAAGAGGAGTA+AGG + tig0032298:15463-15482 Msa1448690:CDS 40.0%
AATCAAGAGGAGTAAGGATG+TGG + tig0032298:15469-15488 Msa1448690:CDS 40.0%
ATGTGGTTAAGTTCAAGGTC+AGG + tig0032298:15486-15505 Msa1448690:CDS 40.0%
!! ACTAAGTGTGTAGAGGTACT+TGG - tig0032298:15516-15535 None:intergenic 40.0%
CAAACACACTAAGTGTGTAG+AGG - tig0032298:15523-15542 None:intergenic 40.0%
TGTAAATCCAACTACAGACC+TGG - tig0032298:15584-15603 None:intergenic 40.0%
AGTTGAACTGTTGGTATCCT+AGG - tig0032298:15631-15650 None:intergenic 40.0%
TGAGTGTTCAAGACCTTTAG+AGG + tig0032298:16138-16157 Msa1448690:CDS 40.0%
TTGGATGAGAAATCAAGGAG+AGG + tig0032298:16163-16182 Msa1448690:three_prime_UTR 40.0%
AAGGGTAAAGATCCTCCAAA+TGG + tig0032298:16256-16275 Msa1448690:three_prime_UTR 40.0%
GAGTTAAGATCCTCTCCATT+TGG - tig0032298:16319-16338 None:intergenic 40.0%
TGTAACTTGAGATTGTAGCC+AGG + tig0032298:16343-16362 Msa1448690:three_prime_UTR 40.0%
TTGAGATTGTAGCCAGGAAA+TGG + tig0032298:16349-16368 Msa1448690:three_prime_UTR 40.0%
! GATTTAGGACCCGTTTCGAT+TGG + tig0032298:14740-14759 Msa1448690:intron 45.0%
! TTTTCATCAGCTGCCCAGAA+TGG + tig0032298:15161-15180 Msa1448690:intron 45.0%
ATTTCCTTCTCACTGCCAGA+AGG + tig0032298:15426-15445 Msa1448690:CDS 45.0%
TTGAAGCAATCACTTCCTCC+AGG + tig0032298:15563-15582 Msa1448690:CDS 45.0%
AAATCCAACTACAGACCTGG+AGG - tig0032298:15581-15600 None:intergenic 45.0%
GTTACTATTGGCAAAAGGGC+CGG - tig0032298:15947-15966 None:intergenic 45.0%
GGAGAGAATACCAAATGGAG+AGG + tig0032298:16306-16325 Msa1448690:three_prime_UTR 45.0%
! GATTTAGGACCCGTTTCGAT+TGG + tig0032298:14740-14759 Msa1448690:intron 45.0%
! TTTTCATCAGCTGCCCAGAA+TGG + tig0032298:15161-15180 Msa1448690:intron 45.0%
ATTTCCTTCTCACTGCCAGA+AGG + tig0032298:15426-15445 Msa1448690:CDS 45.0%
TTGAAGCAATCACTTCCTCC+AGG + tig0032298:15563-15582 Msa1448690:CDS 45.0%
AAATCCAACTACAGACCTGG+AGG - tig0032298:15581-15600 None:intergenic 45.0%
GTTACTATTGGCAAAAGGGC+CGG - tig0032298:15947-15966 None:intergenic 45.0%
GGAGAGAATACCAAATGGAG+AGG + tig0032298:16306-16325 Msa1448690:three_prime_UTR 45.0%
CTCACTGCCTCTTGCAACAA+TGG + tig0032298:14362-14381 Msa1448690:CDS 50.0%
CGAGGTCAGTGAGAATCAAG+AGG + tig0032298:15456-15475 Msa1448690:CDS 50.0%
ACTTCCTCCAGGTCTGTAGT+TGG + tig0032298:15574-15593 Msa1448690:intron 50.0%
CTCACTGCCTCTTGCAACAA+TGG + tig0032298:14362-14381 Msa1448690:CDS 50.0%
CGAGGTCAGTGAGAATCAAG+AGG + tig0032298:15456-15475 Msa1448690:CDS 50.0%
ACTTCCTCCAGGTCTGTAGT+TGG + tig0032298:15574-15593 Msa1448690:intron 50.0%
CCTTCCTTCTGGCAGTGAGA+AGG - tig0032298:15433-15452 None:intergenic 55.0%
CCTTCTCACTGCCAGAAGGA+AGG + tig0032298:15430-15449 Msa1448690:CDS 55.0%
TGACCTCGCATCCTTCCTTC+TGG - tig0032298:15444-15463 None:intergenic 55.0%
CCTTCCTTCTGGCAGTGAGA+AGG - tig0032298:15433-15452 None:intergenic 55.0%
CCTTCTCACTGCCAGAAGGA+AGG + tig0032298:15430-15449 Msa1448690:CDS 55.0%
TGACCTCGCATCCTTCCTTC+TGG - tig0032298:15444-15463 None:intergenic 55.0%
CTGCCAGAAGGAAGGATGCG+AGG + tig0032298:15438-15457 Msa1448690:CDS 60.0%
CTGCCAGAAGGAAGGATGCG+AGG + tig0032298:15438-15457 Msa1448690:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0032298 gene 14273 16523 14273 ID=Msa1448690;Name=Msa1448690
tig0032298 mRNA 14273 16523 14273 ID=Msa1448690-mRNA-1;Parent=Msa1448690;Name=Msa1448690-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|1|0.66|1|1|1|3|366|105
tig0032298 exon 14273 14383 14273 ID=Msa1448690-mRNA-1:exon:16550;Parent=Msa1448690-mRNA-1
tig0032298 exon 15401 15584 15401 ID=Msa1448690-mRNA-1:exon:16551;Parent=Msa1448690-mRNA-1
tig0032298 exon 16135 16523 16135 ID=Msa1448690-mRNA-1:exon:16552;Parent=Msa1448690-mRNA-1
tig0032298 CDS 14273 14383 14273 ID=Msa1448690-mRNA-1:cds;Parent=Msa1448690-mRNA-1
tig0032298 CDS 15401 15584 15401 ID=Msa1448690-mRNA-1:cds;Parent=Msa1448690-mRNA-1
tig0032298 CDS 16135 16157 16135 ID=Msa1448690-mRNA-1:cds;Parent=Msa1448690-mRNA-1
tig0032298 three_prime_UTR 16158 16523 16158 ID=Msa1448690-mRNA-1:three_prime_utr;Parent=Msa1448690-mRNA-1
Gene Sequence

>Msa1448690

ATGGGTATTTTTCGGGGAAATCAAAGAACTACGAAAACGTTTAGGATTAGGGTTTATCAGCGGCAGCAACATTTCACACTTCGTTCGAACTCACTGCCTCTTGCAACAATGCCTAAGCAAATCAACGAGATTAAGGATTTCCTTCTCACTGCCAGAAGGAAGGATGCGAGGTCAGTGAGAATCAAGAGGAGTAAGGATGTGGTTAAGTTCAAGGTCAGGTGTTCCAAGTACCTCTACACACTTAGTGTGTTTGACGTTGAGAAAGCTGACAAATTGAAGCAATCACTTCCTCCAGGTTTGAGTGTTCAAGACCTTTAG

Protein sequence

>Msa1448690

MGIFRGNQRTTKTFRIRVYQRQQHFTLRSNSLPLATMPKQINEIKDFLLTARRKDARSVRIKRSKDVVKFKVRCSKYLYTLSVFDVEKADKLKQSLPPGLSVQDL*