Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0613990 | XP_024640167.1 | 88.854 | 314 | 4 | 1 | 1 | 283 | 461 | 774 | 0.0 | 555 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0613990 | G7K6I5 | 88.854 | 314 | 4 | 1 | 1 | 283 | 576 | 889 | 0.0 | 555 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011720 | Msa0613990 | 0.804307 | 2.300325e-49 | -8.615850e-47 |
| Msa0610590 | Msa0613990 | 0.803709 | 3.062541e-49 | -8.615850e-47 |
| Msa0613990 | Msa0651190 | 0.812023 | 5.223505e-51 | -8.615850e-47 |
| Msa0613990 | Msa0697140 | 0.845197 | 4.717890e-59 | -8.615850e-47 |
| Msa0613990 | Msa0757080 | 0.806803 | 6.888788e-50 | -8.615850e-47 |
| Msa0613990 | Msa0908170 | 0.803568 | 3.276979e-49 | -8.615850e-47 |
| Msa0613990 | Msa1205130 | 0.804001 | 2.664146e-49 | -8.615850e-47 |
| Msa0613990 | Msa1318240 | 0.800472 | 1.418117e-48 | -8.615850e-47 |
| Msa0613990 | Msa1343320 | 0.812909 | 3.344477e-51 | -8.615850e-47 |
| Msa0613990 | Msa1408790 | 0.810669 | 1.027388e-50 | -8.615850e-47 |
| Msa0613990 | Msa1436040 | 0.806530 | 7.866124e-50 | -8.615850e-47 |
| Msa0426330 | Msa0613990 | 0.810324 | 1.219805e-50 | -8.615850e-47 |
| Msa0257250 | Msa0613990 | 0.816101 | 6.576613e-52 | -8.615850e-47 |
| Msa0270270 | Msa0613990 | 0.810043 | 1.402740e-50 | -8.615850e-47 |
| Msa0296560 | Msa0613990 | 0.807645 | 4.569206e-50 | -8.615850e-47 |
| Msa0335040 | Msa0613990 | 0.805730 | 1.159487e-49 | -8.615850e-47 |
| Msa0578970 | Msa0613990 | 0.807648 | 4.561797e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0613990 | MtrunA17_Chr5g0395711 | 88.854 | 314 | 4 | 1 | 1 | 283 | 576 | 889 | 0.0 | 555 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 67 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACGAGGATGCTTCTGTTTC+AGG | 0.107488 | 4_2:+62901623 | None:intergenic |
| TAGGAGGATGCTTCTGTTTC+AGG | 0.113465 | 4_2:+62901581 | None:intergenic |
| AAAATGAGGGTTTGGATTCT+TGG | 0.225760 | 4_2:-62898792 | Msa0613990:three_prime_UTR |
| CCTTCGCAGCAAGACCAATT+TGG | 0.228450 | 4_2:-62899922 | Msa0613990:intron |
| GATGAGGATGCATCTGTTTC+AGG | 0.245100 | 4_2:+62901665 | None:intergenic |
| AGGTGCATCCATTCTGTCTA+TGG | 0.274117 | 4_2:+62901643 | None:intergenic |
| AACTGGTTTGGAGGGAAAAC+TGG | 0.315287 | 4_2:-62898986 | Msa0613990:CDS |
| AGCAAGAAGAATCTGAATAT+TGG | 0.316961 | 4_2:-62899858 | Msa0613990:CDS |
| CTTCGCAGCAAGACCAATTT+GGG | 0.321635 | 4_2:-62899921 | Msa0613990:intron |
| CACCCAGTCCTTAGAGTAGA+AGG | 0.370880 | 4_2:-62901485 | Msa0613990:CDS |
| GGATGCTAGCATCAATAATA+AGG | 0.372137 | 4_2:-62899749 | Msa0613990:intron |
| CGATGTAAATAATTGTATAT+AGG | 0.372947 | 4_2:-62898867 | Msa0613990:three_prime_UTR |
| AACCTCATTATTTCACCATT+AGG | 0.384002 | 4_2:+62899045 | None:intergenic |
| GCAAGAAGAATCTGAATATT+GGG | 0.390134 | 4_2:-62899857 | Msa0613990:CDS |
| GGTGACTTCCTTCTACTCTA+AGG | 0.425809 | 4_2:+62901477 | None:intergenic |
| TGCTGCACAAAGAACTGGTT+TGG | 0.428291 | 4_2:-62898998 | Msa0613990:CDS |
| TTATGCACGGCTATACATAA+AGG | 0.429785 | 4_2:-62901241 | Msa0613990:intron |
| GTTGATGCTGCACAAAGAAC+TGG | 0.434423 | 4_2:-62899003 | Msa0613990:CDS |
| ACTTTGCGTCGTGCTTTGTT+TGG | 0.446738 | 4_2:+62899121 | None:intergenic |
| ACCACTTCTCCAAGGTTAAG+AGG | 0.451401 | 4_2:+62899081 | None:intergenic |
| AAGCTTCCCATCGCTTATCC+TGG | 0.456526 | 4_2:+62901262 | None:intergenic |
| TAAGAATCTAAATCATTCAT+TGG | 0.456941 | 4_2:-62898900 | Msa0613990:exon |
| AAGCACGACGCAAAGTTTGA+TGG | 0.460137 | 4_2:-62899114 | Msa0613990:CDS |
| CGTTGTATCTGCCGTGTTCG+AGG | 0.465459 | 4_2:-62899833 | Msa0613990:CDS |
| CCTGGACGAATGTTGGTAGA+AGG | 0.465788 | 4_2:+62899896 | None:intergenic |
| TACTTGCTGCTGTTATCATC+AGG | 0.469739 | 4_2:-62901454 | Msa0613990:intron |
| TTGAATGCAGTTAAATTGAC+GGG | 0.475039 | 4_2:-62898844 | Msa0613990:three_prime_UTR |
| ATATTCAGATTCTTCTTGCT+CGG | 0.478819 | 4_2:+62899861 | None:intergenic |
| CTTCCTTCTACTCTAAGGAC+TGG | 0.480606 | 4_2:+62901482 | None:intergenic |
| GAGCAAGAATAAGTCATTGA+AGG | 0.482206 | 4_2:-62901513 | Msa0613990:CDS |
| TTGGTAGAAGGCGCCCAAAT+TGG | 0.484321 | 4_2:+62899908 | None:intergenic |
| GTAGTTATATGTTGGCCTAA+TGG | 0.492948 | 4_2:-62899060 | Msa0613990:CDS |
| GTTGAATGCAGTTAAATTGA+CGG | 0.496062 | 4_2:-62898845 | Msa0613990:three_prime_UTR |
| AGAACGCAATTGCTCTTCCC+AGG | 0.498208 | 4_2:+62899158 | None:intergenic |
| TTTGAGAACAATGCTTTCCT+GGG | 0.499290 | 4_2:-62899175 | Msa0613990:CDS |
| AGTTGCTGTAAGCTTTCAGC+TGG | 0.500827 | 4_2:-62901322 | Msa0613990:CDS |
| TTGATAACCTGGACGAATGT+TGG | 0.506535 | 4_2:+62899889 | None:intergenic |
| TGCACAAAGAACTGGTTTGG+AGG | 0.514576 | 4_2:-62898995 | Msa0613990:CDS |
| CTTGGTTCCGTCAACTTCTG+TGG | 0.522372 | 4_2:-62899770 | Msa0613990:CDS |
| CCTTCTACCAACATTCGTCC+AGG | 0.532976 | 4_2:-62899896 | Msa0613990:CDS |
| TCCTCTTAACCTTGGAGAAG+TGG | 0.533885 | 4_2:-62899082 | Msa0613990:CDS |
| GAGAAGTGGTAGTTATATGT+TGG | 0.534360 | 4_2:-62899068 | Msa0613990:CDS |
| CCTAATACAAAACTCAAAGA+TGG | 0.543073 | 4_2:-62898937 | Msa0613990:CDS |
| ATCGCAATCAAAATTAGACT+TGG | 0.551458 | 4_2:-62899788 | Msa0613990:CDS |
| CAGAAATATGCTGATTTGAA+AGG | 0.553169 | 4_2:-62898819 | Msa0613990:three_prime_UTR |
| ATCCTCATCCATAGACAGAA+TGG | 0.554296 | 4_2:-62901651 | Msa0613990:CDS |
| CCACGTGGTCCTCTTAACCT+TGG | 0.557933 | 4_2:-62899090 | Msa0613990:CDS |
| CTAGCATCCACAGAAGTTGA+CGG | 0.563692 | 4_2:+62899763 | None:intergenic |
| AAGAATAAGTCATTGAAGGC+TGG | 0.566635 | 4_2:-62901509 | Msa0613990:CDS |
| GTTGTATCTGCCGTGTTCGA+GGG | 0.567185 | 4_2:-62899832 | Msa0613990:CDS |
| ATCCATTCTGTCTATGGATG+AGG | 0.570002 | 4_2:+62901649 | None:intergenic |
| ATCCTCGTCTATAGACAGAA+TGG | 0.578285 | 4_2:-62901609 | Msa0613990:CDS |
| GCACAAAGAACTGGTTTGGA+GGG | 0.579517 | 4_2:-62898994 | Msa0613990:CDS |
| TTCCTTCTACTCTAAGGACT+GGG | 0.583222 | 4_2:+62901483 | None:intergenic |
| GCTCGGTAAAATTGATAACC+TGG | 0.594376 | 4_2:+62899878 | None:intergenic |
| GAAATAATGAGGTTGAAAGC+TGG | 0.602733 | 4_2:-62899036 | Msa0613990:CDS |
| CACTTGCTTGCCCTCGAACA+CGG | 0.606773 | 4_2:+62899822 | None:intergenic |
| GGCCTAATGGTGAAATAATG+AGG | 0.617241 | 4_2:-62899047 | Msa0613990:CDS |
| TGATGATAACAGCAGCAAGT+AGG | 0.630310 | 4_2:+62901456 | None:intergenic |
| CGTGTTCGAGGGCAAGCAAG+TGG | 0.634324 | 4_2:-62899821 | Msa0613990:CDS |
| ATATAACTACCACTTCTCCA+AGG | 0.638921 | 4_2:+62899073 | None:intergenic |
| AGCGATGGGAAGCTTATGCA+CGG | 0.649071 | 4_2:-62901254 | Msa0613990:CDS |
| TGAATGCAGTTAAATTGACG+GGG | 0.656449 | 4_2:-62898843 | Msa0613990:three_prime_UTR |
| ATCCATTCTGTCTATAGACG+AGG | 0.664126 | 4_2:+62901607 | None:intergenic |
| GAATGCAGTTAAATTGACGG+GGG | 0.701952 | 4_2:-62898842 | Msa0613990:three_prime_UTR |
| GCAAAGTTTGATGGTCCACG+TGG | 0.717907 | 4_2:-62899105 | Msa0613990:CDS |
| CCAAGGTTAAGAGGACCACG+TGG | 0.754888 | 4_2:+62899090 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAAACGTTAAATATATTT+TGG | - | chr4_2:62900068-62900087 | Msa0613990:intron | 10.0% |
| !! | AACAAAATATAAAGAAAAGA+TGG | + | chr4_2:62899534-62899553 | None:intergenic | 15.0% |
| !!! | TTTTATTTTTTTTCCTTGTT+TGG | - | chr4_2:62899951-62899970 | Msa0613990:intron | 15.0% |
| !!! | TTATTTTTTCTTATTCTCTT+TGG | - | chr4_2:62900168-62900187 | Msa0613990:intron | 15.0% |
| !! | ATTATTATAAATGAAGTACA+TGG | - | chr4_2:62900249-62900268 | Msa0613990:intron | 15.0% |
| !!! | TTCTTTTTCTTAGATATAAA+CGG | - | chr4_2:62900352-62900371 | Msa0613990:intron | 15.0% |
| !! | TGATTCTTATATTAATTGAT+TGG | + | chr4_2:62900724-62900743 | None:intergenic | 15.0% |
| !! | GTTACCAAAAATATAAATAA+TGG | + | chr4_2:62900934-62900953 | None:intergenic | 15.0% |
| !!! | TTAACATTTTTAAAATCTAC+TGG | + | chr4_2:62901111-62901130 | None:intergenic | 15.0% |
| !! | TAACATAAATCCATTAGAAA+TGG | + | chr4_2:62898934-62898953 | None:intergenic | 20.0% |
| !! | GCTTAACTTAAAACATTTAT+TGG | - | chr4_2:62899138-62899157 | Msa0613990:CDS | 20.0% |
| !! | AAAGCAAATCTTGAAAAATT+AGG | + | chr4_2:62899357-62899376 | None:intergenic | 20.0% |
| !!! | TTGATTGGTTAAAACTAAAA+TGG | + | chr4_2:62899645-62899664 | None:intergenic | 20.0% |
| !! | GAAACAAAAACAATGATAAA+GGG | + | chr4_2:62899890-62899909 | None:intergenic | 20.0% |
| !! | AGAAACAAAAACAATGATAA+AGG | + | chr4_2:62899891-62899910 | None:intergenic | 20.0% |
| !! | AAATCATTACAAGGAATTAA+GGG | + | chr4_2:62900143-62900162 | None:intergenic | 20.0% |
| !! | ATAAAAGTCAAATCATTACA+AGG | + | chr4_2:62900152-62900171 | None:intergenic | 20.0% |
| !!! | TCTTTTTCTTAGATATAAAC+GGG | - | chr4_2:62900353-62900372 | Msa0613990:intron | 20.0% |
| !! | CATAATATAAATATTGCTGT+GGG | + | chr4_2:62900905-62900924 | None:intergenic | 20.0% |
| !! | ACATAATATAAATATTGCTG+TGG | + | chr4_2:62900906-62900925 | None:intergenic | 20.0% |
| !!! | GCAACCATTATTTATATTTT+TGG | - | chr4_2:62900927-62900946 | Msa0613990:intron | 20.0% |
| !! | TAAGAATCTAAATCATTCAT+TGG | - | chr4_2:62901450-62901469 | Msa0613990:intron | 20.0% |
| !! | CGATGTAAATAATTGTATAT+AGG | - | chr4_2:62901483-62901502 | Msa0613990:CDS | 20.0% |
| !!! | ATTACATTACATTTTTGACA+AGG | + | chr4_2:62901627-62901646 | None:intergenic | 20.0% |
| !! | TTCATTTTCTACACTGAAAA+CGG | + | chr4_2:62898994-62899013 | None:intergenic | 25.0% |
| !! | TTGGTAATTGATATGAATGT+AGG | - | chr4_2:62899157-62899176 | Msa0613990:CDS | 25.0% |
| ! | AATATAAAGAAAAGATGGCA+CGG | + | chr4_2:62899529-62899548 | None:intergenic | 25.0% |
| ! | AGAACTAGAATAAAGAAAGT+GGG | + | chr4_2:62899995-62900014 | None:intergenic | 25.0% |
| ! | CAAATCATTACAAGGAATTA+AGG | + | chr4_2:62900144-62900163 | None:intergenic | 25.0% |
| !! | CTCTTTGGTTTATAGATTAA+TGG | - | chr4_2:62900183-62900202 | Msa0613990:intron | 25.0% |
| !!! | ATGGACATTCTTTTTTTTGT+TGG | - | chr4_2:62900268-62900287 | Msa0613990:intron | 25.0% |
| !!! | CTTTTTTTTGTTGGATTACA+TGG | - | chr4_2:62900277-62900296 | Msa0613990:intron | 25.0% |
| ! | AATGTGTAAGAAACATAAGT+TGG | + | chr4_2:62900640-62900659 | None:intergenic | 25.0% |
| ! | AATGATAAGCAAATTCCATT+TGG | + | chr4_2:62900665-62900684 | None:intergenic | 25.0% |
| ! | ATTGGCAATTATATTTGACA+CGG | + | chr4_2:62900706-62900725 | None:intergenic | 25.0% |
| ! | TCAATTATGCATAGTGATAT+TGG | + | chr4_2:62901012-62901031 | None:intergenic | 25.0% |
| ! | TGCATAATTGACTAGAATTT+AGG | - | chr4_2:62901021-62901040 | Msa0613990:intron | 25.0% |
| ! | ACTCTATATATTCATCTTCT+AGG | - | chr4_2:62901145-62901164 | Msa0613990:intron | 25.0% |
| ! | ATTTGAAAGGAAGAAAAATG+AGG | - | chr4_2:62901544-62901563 | Msa0613990:CDS | 25.0% |
| ! | TTTGAAAGGAAGAAAAATGA+GGG | - | chr4_2:62901545-62901564 | Msa0613990:CDS | 25.0% |
| ! | TTCTGTGTCTTTGGAAAAAT+AGG | + | chr4_2:62898791-62898810 | None:intergenic | 30.0% |
| TGCAACATTTCCATTTCTAA+TGG | - | chr4_2:62898921-62898940 | Msa0613990:CDS | 30.0% | |
| !! | TGATAGAAGATCATTTTTCC+AGG | - | chr4_2:62899070-62899089 | Msa0613990:CDS | 30.0% |
| ACTCATAGTTACTGATAAGT+GGG | - | chr4_2:62899278-62899297 | Msa0613990:intron | 30.0% | |
| ! | TTGATTGGTTAAAATCCACA+TGG | - | chr4_2:62899596-62899615 | Msa0613990:intron | 30.0% |
| ! | TGATTGGTTAAAATCCACAT+GGG | - | chr4_2:62899597-62899616 | Msa0613990:intron | 30.0% |
| TCTTACACACTTTCTTTGAT+TGG | + | chr4_2:62899660-62899679 | None:intergenic | 30.0% | |
| CAGAACTAGAATAAAGAAAG+TGG | + | chr4_2:62899996-62900015 | None:intergenic | 30.0% | |
| !! | CACTTTCTTTATTCTAGTTC+TGG | - | chr4_2:62899994-62900013 | Msa0613990:intron | 30.0% |
| ATATTCAGATTCTTCTTGCT+CGG | + | chr4_2:62900492-62900511 | None:intergenic | 30.0% | |
| AGCAAGAAGAATCTGAATAT+TGG | - | chr4_2:62900492-62900511 | Msa0613990:intron | 30.0% | |
| GCAAGAAGAATCTGAATATT+GGG | - | chr4_2:62900493-62900512 | Msa0613990:intron | 30.0% | |
| ATCGCAATCAAAATTAGACT+TGG | - | chr4_2:62900562-62900581 | Msa0613990:intron | 30.0% | |
| TTTCTTACACATTCTCCAAA+TGG | - | chr4_2:62900647-62900666 | Msa0613990:intron | 30.0% | |
| TTAATTCCATGCTATGTAAC+TGG | - | chr4_2:62900762-62900781 | Msa0613990:intron | 30.0% | |
| TTATAACCAGTTACATAGCA+TGG | + | chr4_2:62900771-62900790 | None:intergenic | 30.0% | |
| TAAAGATGATTCTCATGGTT+CGG | + | chr4_2:62900794-62900813 | None:intergenic | 30.0% | |
| GAGAATAAAGATGATTCTCA+TGG | + | chr4_2:62900799-62900818 | None:intergenic | 30.0% | |
| TGCAATTGTGATGTAGAAAT+CGG | - | chr4_2:62900981-62901000 | Msa0613990:intron | 30.0% | |
| TTAAAATCTACTGGAACACA+GGG | + | chr4_2:62901102-62901121 | None:intergenic | 30.0% | |
| ! | TTTAAAATCTACTGGAACAC+AGG | + | chr4_2:62901103-62901122 | None:intergenic | 30.0% |
| AACCTCATTATTTCACCATT+AGG | + | chr4_2:62901308-62901327 | None:intergenic | 30.0% | |
| !! | CCATCTTTGAGTTTTGTATT+AGG | + | chr4_2:62901416-62901435 | None:intergenic | 30.0% |
| CCTAATACAAAACTCAAAGA+TGG | - | chr4_2:62901413-62901432 | Msa0613990:intron | 30.0% | |
| GTTGAATGCAGTTAAATTGA+CGG | - | chr4_2:62901505-62901524 | Msa0613990:CDS | 30.0% | |
| TTGAATGCAGTTAAATTGAC+GGG | - | chr4_2:62901506-62901525 | Msa0613990:CDS | 30.0% | |
| !! | CAGAAATATGCTGATTTGAA+AGG | - | chr4_2:62901531-62901550 | Msa0613990:CDS | 30.0% |
| ! | TGTGTCTTTGGAAAAATAGG+AGG | + | chr4_2:62898788-62898807 | None:intergenic | 35.0% |
| ! | TTTTTCCAAAGACACAGAAG+AGG | - | chr4_2:62898792-62898811 | Msa0613990:three_prime_UTR | 35.0% |
| ! | ATTTTCCTCTTCTGTGTCTT+TGG | + | chr4_2:62898800-62898819 | None:intergenic | 35.0% |
| GAGCAAGAATAAGTCATTGA+AGG | - | chr4_2:62898837-62898856 | Msa0613990:three_prime_UTR | 35.0% | |
| AAGAATAAGTCATTGAAGGC+TGG | - | chr4_2:62898841-62898860 | Msa0613990:three_prime_UTR | 35.0% | |
| AAGACGAGCTACAATCAATA+TGG | + | chr4_2:62898966-62898985 | None:intergenic | 35.0% | |
| ! | ATTTTTCCAGGATAAGCGAT+GGG | - | chr4_2:62899082-62899101 | Msa0613990:CDS | 35.0% |
| TTATGCACGGCTATACATAA+AGG | - | chr4_2:62899109-62899128 | Msa0613990:CDS | 35.0% | |
| TGCTTGTGATGTATGTTTGT+GGG | - | chr4_2:62899181-62899200 | Msa0613990:CDS | 35.0% | |
| TATACTTAGAAGCCAGTAAC+TGG | - | chr4_2:62899215-62899234 | Msa0613990:intron | 35.0% | |
| AACTATGAGTCATACTCAAC+AGG | + | chr4_2:62899268-62899287 | None:intergenic | 35.0% | |
| GACTCATAGTTACTGATAAG+TGG | - | chr4_2:62899277-62899296 | Msa0613990:intron | 35.0% | |
| ! | TTCAAGATTTGCTTTGCAGT+CGG | - | chr4_2:62899362-62899381 | Msa0613990:intron | 35.0% |
| GAAACAATGAAAACAACGTC+TGG | + | chr4_2:62899419-62899438 | None:intergenic | 35.0% | |
| TACATATGCATTTCCTCTCT+CGG | - | chr4_2:62899489-62899508 | Msa0613990:intron | 35.0% | |
| AAATTTATATGGGACCCATG+TGG | + | chr4_2:62899614-62899633 | None:intergenic | 35.0% | |
| ACATGGGTCCCATATAAATT+TGG | - | chr4_2:62899613-62899632 | Msa0613990:intron | 35.0% | |
| GGATCCCACCAAATTTATAT+GGG | + | chr4_2:62899624-62899643 | None:intergenic | 35.0% | |
| TGGATCCCACCAAATTTATA+TGG | + | chr4_2:62899625-62899644 | None:intergenic | 35.0% | |
| CAAATGTGCATATCCAAACA+AGG | + | chr4_2:62899967-62899986 | None:intergenic | 35.0% | |
| GGATGCTAGCATCAATAATA+AGG | - | chr4_2:62900601-62900620 | Msa0613990:intron | 35.0% | |
| CTCACTCTTGTCTCTTAAAT+TGG | - | chr4_2:62900816-62900835 | Msa0613990:intron | 35.0% | |
| AGAATTTCTCAGTACGTGAA+TGG | + | chr4_2:62900855-62900874 | None:intergenic | 35.0% | |
| !! | TTTTGAGAACAATGCTTTCC+TGG | - | chr4_2:62901174-62901193 | Msa0613990:intron | 35.0% |
| TTTGAGAACAATGCTTTCCT+GGG | - | chr4_2:62901175-62901194 | Msa0613990:intron | 35.0% | |
| ATATAACTACCACTTCTCCA+AGG | + | chr4_2:62901280-62901299 | None:intergenic | 35.0% | |
| GAGAAGTGGTAGTTATATGT+TGG | - | chr4_2:62901282-62901301 | Msa0613990:CDS | 35.0% | |
| ! | GTAGTTATATGTTGGCCTAA+TGG | - | chr4_2:62901290-62901309 | Msa0613990:CDS | 35.0% |
| GAAATAATGAGGTTGAAAGC+TGG | - | chr4_2:62901314-62901333 | Msa0613990:CDS | 35.0% | |
| !!! | GGAAAACTGGTTTTGATCAA+CGG | - | chr4_2:62901377-62901396 | Msa0613990:intron | 35.0% |
| TGAATGCAGTTAAATTGACG+GGG | - | chr4_2:62901507-62901526 | Msa0613990:CDS | 35.0% | |
| AAGGAAGAAAAATGAGGGTT+TGG | - | chr4_2:62901550-62901569 | Msa0613990:CDS | 35.0% | |
| AAAATGAGGGTTTGGATTCT+TGG | - | chr4_2:62901558-62901577 | Msa0613990:CDS | 35.0% | |
| ATCCTCATCCATAGACAGAA+TGG | - | chr4_2:62898699-62898718 | Msa0613990:three_prime_UTR | 40.0% | |
| ATCCATTCTGTCTATGGATG+AGG | + | chr4_2:62898704-62898723 | None:intergenic | 40.0% | |
| ATCCTCGTCTATAGACAGAA+TGG | - | chr4_2:62898741-62898760 | Msa0613990:three_prime_UTR | 40.0% | |
| ATCCATTCTGTCTATAGACG+AGG | + | chr4_2:62898746-62898765 | None:intergenic | 40.0% | |
| ! | TTCCTTCTACTCTAAGGACT+GGG | + | chr4_2:62898870-62898889 | None:intergenic | 40.0% |
| TGATGATAACAGCAGCAAGT+AGG | + | chr4_2:62898897-62898916 | None:intergenic | 40.0% | |
| ! | TACTTGCTGCTGTTATCATC+AGG | - | chr4_2:62898896-62898915 | Msa0613990:exon | 40.0% |
| ! | CATTTTTCCAGGATAAGCGA+TGG | - | chr4_2:62899081-62899100 | Msa0613990:CDS | 40.0% |
| CTGCTTGTGATGTATGTTTG+TGG | - | chr4_2:62899180-62899199 | Msa0613990:CDS | 40.0% | |
| ACAATCATCCATCCAGTTAC+TGG | + | chr4_2:62899230-62899249 | None:intergenic | 40.0% | |
| TAACTGGATGGATGATTGTG+TGG | - | chr4_2:62899231-62899250 | Msa0613990:intron | 40.0% | |
| TATGAGTCATACTCAACAGG+AGG | + | chr4_2:62899265-62899284 | None:intergenic | 40.0% | |
| ATAGTTACTGATAAGTGGGC+AGG | - | chr4_2:62899282-62899301 | Msa0613990:intron | 40.0% | |
| TAGTTACTGATAAGTGGGCA+GGG | - | chr4_2:62899283-62899302 | Msa0613990:intron | 40.0% | |
| GAGAGAGGAAATGCATATGT+AGG | + | chr4_2:62899490-62899509 | None:intergenic | 40.0% | |
| ACACACACACACTCTTTGAT+TGG | - | chr4_2:62899581-62899600 | Msa0613990:intron | 40.0% | |
| TGGGTCCCATATAAATTTGG+TGG | - | chr4_2:62899616-62899635 | Msa0613990:intron | 40.0% | |
| GGGTCCCATATAAATTTGGT+GGG | - | chr4_2:62899617-62899636 | Msa0613990:intron | 40.0% | |
| AAATACACACTGTGTCGAGA+TGG | - | chr4_2:62899808-62899827 | Msa0613990:CDS | 40.0% | |
| TCGAGATGGTATGTATCACA+AGG | - | chr4_2:62899822-62899841 | Msa0613990:CDS | 40.0% | |
| CTAGAATAAAGAAAGTGGGC+AGG | + | chr4_2:62899991-62900010 | None:intergenic | 40.0% | |
| ! | TTGATAACCTGGACGAATGT+TGG | + | chr4_2:62900464-62900483 | None:intergenic | 40.0% |
| ! | GCTCGGTAAAATTGATAACC+TGG | + | chr4_2:62900475-62900494 | None:intergenic | 40.0% |
| GCTGTGGGAAGATCAAATTT+CGG | + | chr4_2:62900890-62900909 | None:intergenic | 40.0% | |
| GGCCTAATGGTGAAATAATG+AGG | - | chr4_2:62901303-62901322 | Msa0613990:CDS | 40.0% | |
| GAATGCAGTTAAATTGACGG+GGG | - | chr4_2:62901508-62901527 | Msa0613990:CDS | 40.0% | |
| GATGAGGATGCATCTGTTTC+AGG | + | chr4_2:62898688-62898707 | None:intergenic | 45.0% | |
| AGGTGCATCCATTCTGTCTA+TGG | + | chr4_2:62898710-62898729 | None:intergenic | 45.0% | |
| TAGGAGGATGCTTCTGTTTC+AGG | + | chr4_2:62898772-62898791 | None:intergenic | 45.0% | |
| ! | CTTCCTTCTACTCTAAGGAC+TGG | + | chr4_2:62898871-62898890 | None:intergenic | 45.0% |
| GGTGACTTCCTTCTACTCTA+AGG | + | chr4_2:62898876-62898895 | None:intergenic | 45.0% | |
| AGTTGCTGTAAGCTTTCAGC+TGG | - | chr4_2:62899028-62899047 | Msa0613990:CDS | 45.0% | |
| CTTAGAAGCCAGTAACTGGA+TGG | - | chr4_2:62899219-62899238 | Msa0613990:intron | 45.0% | |
| CAGCAGTAAGCAACTTGACA+AGG | + | chr4_2:62899720-62899739 | None:intergenic | 45.0% | |
| TGCTTCAGGTGTCTGATGAA+TGG | - | chr4_2:62899743-62899762 | Msa0613990:intron | 45.0% | |
| TTCAGGTGTCTGATGAATGG+TGG | - | chr4_2:62899746-62899765 | Msa0613990:intron | 45.0% | |
| GATGAATGGTGGTTTGAACC+AGG | - | chr4_2:62899757-62899776 | Msa0613990:CDS | 45.0% | |
| TCTCAGCTATGCAGAGACAA+TGG | - | chr4_2:62899908-62899927 | Msa0613990:CDS | 45.0% | |
| CTTCGCAGCAAGACCAATTT+GGG | - | chr4_2:62900429-62900448 | Msa0613990:intron | 45.0% | |
| CTAGCATCCACAGAAGTTGA+CGG | + | chr4_2:62900590-62900609 | None:intergenic | 45.0% | |
| ACACGGCAGTAAACAGAAGA+GGG | + | chr4_2:62900689-62900708 | None:intergenic | 45.0% | |
| ! | ACTTTGCGTCGTGCTTTGTT+TGG | + | chr4_2:62901232-62901251 | None:intergenic | 45.0% |
| AAGCACGACGCAAAGTTTGA+TGG | - | chr4_2:62901236-62901255 | Msa0613990:intron | 45.0% | |
| TCCTCTTAACCTTGGAGAAG+TGG | - | chr4_2:62901268-62901287 | Msa0613990:CDS | 45.0% | |
| ACCACTTCTCCAAGGTTAAG+AGG | + | chr4_2:62901272-62901291 | None:intergenic | 45.0% | |
| GTTGATGCTGCACAAAGAAC+TGG | - | chr4_2:62901347-62901366 | Msa0613990:CDS | 45.0% | |
| TGCTGCACAAAGAACTGGTT+TGG | - | chr4_2:62901352-62901371 | Msa0613990:CDS | 45.0% | |
| !! | TGCACAAAGAACTGGTTTGG+AGG | - | chr4_2:62901355-62901374 | Msa0613990:intron | 45.0% |
| !! | GCACAAAGAACTGGTTTGGA+GGG | - | chr4_2:62901356-62901375 | Msa0613990:intron | 45.0% |
| !! | AACTGGTTTGGAGGGAAAAC+TGG | - | chr4_2:62901364-62901383 | Msa0613990:intron | 45.0% |
| !! | TATAATAATAAAAGTTAATT+TGG | + | chr4_2:62900238-62900257 | None:intergenic | 5.0% |
| GACGAGGATGCTTCTGTTTC+AGG | + | chr4_2:62898730-62898749 | None:intergenic | 50.0% | |
| CACCCAGTCCTTAGAGTAGA+AGG | - | chr4_2:62898865-62898884 | Msa0613990:three_prime_UTR | 50.0% | |
| AAGCTTCCCATCGCTTATCC+TGG | + | chr4_2:62899091-62899110 | None:intergenic | 50.0% | |
| AGCGATGGGAAGCTTATGCA+CGG | - | chr4_2:62899096-62899115 | Msa0613990:CDS | 50.0% | |
| TGCTTTGCAGTCGGAGACAT+AGG | - | chr4_2:62899371-62899390 | Msa0613990:intron | 50.0% | |
| !! | GCTTACTGCTGACTTGCTTC+AGG | - | chr4_2:62899729-62899748 | Msa0613990:intron | 50.0% |
| TGGTGGTTTGAACCAGGACA+TGG | - | chr4_2:62899763-62899782 | Msa0613990:CDS | 50.0% | |
| GGTGGTTTGAACCAGGACAT+GGG | - | chr4_2:62899764-62899783 | Msa0613990:CDS | 50.0% | |
| GTGGTTTGAACCAGGACATG+GGG | - | chr4_2:62899765-62899784 | Msa0613990:CDS | 50.0% | |
| TTGAACCAGGACATGGGGAT+TGG | - | chr4_2:62899770-62899789 | Msa0613990:CDS | 50.0% | |
| !! | CCAAATTGGTCTTGCTGCGA+AGG | + | chr4_2:62900431-62900450 | None:intergenic | 50.0% |
| CCTTCGCAGCAAGACCAATT+TGG | - | chr4_2:62900428-62900447 | Msa0613990:intron | 50.0% | |
| !! | TTGGTAGAAGGCGCCCAAAT+TGG | + | chr4_2:62900445-62900464 | None:intergenic | 50.0% |
| ! | CCTGGACGAATGTTGGTAGA+AGG | + | chr4_2:62900457-62900476 | None:intergenic | 50.0% |
| CCTTCTACCAACATTCGTCC+AGG | - | chr4_2:62900454-62900473 | Msa0613990:intron | 50.0% | |
| GTTGTATCTGCCGTGTTCGA+GGG | - | chr4_2:62900518-62900537 | Msa0613990:intron | 50.0% | |
| CTTGGTTCCGTCAACTTCTG+TGG | - | chr4_2:62900580-62900599 | Msa0613990:intron | 50.0% | |
| GACACGGCAGTAAACAGAAG+AGG | + | chr4_2:62900690-62900709 | None:intergenic | 50.0% | |
| AGAACGCAATTGCTCTTCCC+AGG | + | chr4_2:62901195-62901214 | None:intergenic | 50.0% | |
| ! | GCAAAGTTTGATGGTCCACG+TGG | - | chr4_2:62901245-62901264 | Msa0613990:CDS | 50.0% |
| AAGATGGCACGGCAGCAGAA+TGG | + | chr4_2:62899518-62899537 | None:intergenic | 55.0% | |
| GTACACCAATCCCCATGTCC+TGG | + | chr4_2:62899778-62899797 | None:intergenic | 55.0% | |
| CGTTGTATCTGCCGTGTTCG+AGG | - | chr4_2:62900517-62900536 | Msa0613990:intron | 55.0% | |
| CACTTGCTTGCCCTCGAACA+CGG | + | chr4_2:62900531-62900550 | None:intergenic | 55.0% | |
| CCAAGGTTAAGAGGACCACG+TGG | + | chr4_2:62901263-62901282 | None:intergenic | 55.0% | |
| CCACGTGGTCCTCTTAACCT+TGG | - | chr4_2:62901260-62901279 | Msa0613990:CDS | 55.0% | |
| AGCAGAATGGTGGCCGAGAG+AGG | + | chr4_2:62899505-62899524 | None:intergenic | 60.0% | |
| ATGGCACGGCAGCAGAATGG+TGG | + | chr4_2:62899515-62899534 | None:intergenic | 60.0% | |
| CGTGTTCGAGGGCAAGCAAG+TGG | - | chr4_2:62900529-62900548 | Msa0613990:intron | 60.0% | |
| AGTGGGCAGGGTCTCTCGAG+AGG | - | chr4_2:62899295-62899314 | Msa0613990:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 62898676 | 62901696 | 62898676 | ID=Msa0613990;Name=Msa0613990 |
| chr4_2 | mRNA | 62898676 | 62901696 | 62898676 | ID=Msa0613990-mRNA-1;Parent=Msa0613990;Name=Msa0613990-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.66|0.75|1|1|1|4|236|283 |
| chr4_2 | exon | 62898676 | 62899205 | 62898676 | ID=Msa0613990-mRNA-1:exon:17448;Parent=Msa0613990-mRNA-1 |
| chr4_2 | exon | 62899750 | 62899935 | 62899750 | ID=Msa0613990-mRNA-1:exon:17447;Parent=Msa0613990-mRNA-1 |
| chr4_2 | exon | 62901242 | 62901371 | 62901242 | ID=Msa0613990-mRNA-1:exon:17446;Parent=Msa0613990-mRNA-1 |
| chr4_2 | exon | 62901455 | 62901696 | 62901455 | ID=Msa0613990-mRNA-1:exon:17445;Parent=Msa0613990-mRNA-1 |
| chr4_2 | CDS | 62901455 | 62901696 | 62901455 | ID=Msa0613990-mRNA-1:cds;Parent=Msa0613990-mRNA-1 |
| chr4_2 | CDS | 62901242 | 62901371 | 62901242 | ID=Msa0613990-mRNA-1:cds;Parent=Msa0613990-mRNA-1 |
| chr4_2 | CDS | 62899750 | 62899935 | 62899750 | ID=Msa0613990-mRNA-1:cds;Parent=Msa0613990-mRNA-1 |
| chr4_2 | CDS | 62898912 | 62899205 | 62898912 | ID=Msa0613990-mRNA-1:cds;Parent=Msa0613990-mRNA-1 |
| chr4_2 | three_prime_UTR | 62898676 | 62898911 | 62898676 | ID=Msa0613990-mRNA-1:three_prime_utr;Parent=Msa0613990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
