AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0697140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0697140 MtrunA17_Chr5g0395711 88.535 314 5 1 1 283 576 889 0.0 553
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 66 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACGAGGATGCTTCTGTTTC+AGG 0.107488 4_4:-67119925 None:intergenic
TAGGAGGATGCTTCTGTTTC+AGG 0.113465 4_4:-67119967 None:intergenic
AAAATGAGGGTTTGGATTCT+TGG 0.225760 4_4:+67123001 Msa0697140:three_prime_UTR
CCTTCGCAGCAAGACCAATT+TGG 0.229794 4_4:+67121641 Msa0697140:intron
AGGTGCATCCATTCTGTCTA+TGG 0.274117 4_4:-67119905 None:intergenic
AACTGGTTTGGAGGGAAAAC+TGG 0.315287 4_4:+67122577 Msa0697140:CDS
AGCAAGAAGAATCTGAATAT+TGG 0.316961 4_4:+67121705 Msa0697140:CDS
CTTCGCAGCAAGACCAATTT+GGG 0.328748 4_4:+67121642 Msa0697140:intron
TTATGCACGGCTATACAAAA+AGG 0.347651 4_4:+67120307 Msa0697140:CDS
CACCCAGTCCTTAGAGTAGA+AGG 0.370880 4_4:+67120063 Msa0697140:CDS
GGATGCTAGCATCAATAATA+AGG 0.372137 4_4:+67121814 Msa0697140:CDS
GATGAGGATGCATCTGTTAC+AGG 0.372254 4_4:-67119883 None:intergenic
AACCTCATTATTTCACCATT+AGG 0.384002 4_4:-67122518 None:intergenic
GCAAGAAGAATCTGAATATT+GGG 0.390134 4_4:+67121706 Msa0697140:CDS
GGTGACTTCCTTCTACTCTA+AGG 0.425809 4_4:-67120071 None:intergenic
TGCTGCACAAAGAACTGGTT+TGG 0.428291 4_4:+67122565 Msa0697140:CDS
GTTGATGCTGCACAAAGAAC+TGG 0.434423 4_4:+67122560 Msa0697140:CDS
TAACGATGTAAATAATTGTA+TGG 0.434594 4_4:+67122693 Msa0697140:three_prime_UTR
ACTTTGCGTCGTGCTTTGTT+TGG 0.446738 4_4:-67122442 None:intergenic
ACCACTTCTCCAAGGTTAAG+AGG 0.451401 4_4:-67122482 None:intergenic
AAGCTTCCCATCGCTTATCC+TGG 0.456526 4_4:-67120286 None:intergenic
GAGCAAGAATAAGTCATTGA+AGG 0.456586 4_4:+67120035 Msa0697140:CDS
TAAGAATCTAAATCATTCAT+TGG 0.456941 4_4:+67122663 Msa0697140:exon
AAGCACGACGCAAAGTTTGA+TGG 0.460137 4_4:+67122449 Msa0697140:CDS
CCTGGACGAATGTTGGTAGA+AGG 0.461191 4_4:-67121667 None:intergenic
CGTTGTATCTGCCGTGTTCG+AGG 0.465459 4_4:+67121730 Msa0697140:CDS
TACTTGCTGCTGTTATCATC+AGG 0.469739 4_4:+67120094 Msa0697140:CDS
TTGAATGCAGTTAAATTGAC+GGG 0.475039 4_4:+67122949 Msa0697140:three_prime_UTR
ATATTCAGATTCTTCTTGCT+CGG 0.478819 4_4:-67121702 None:intergenic
CTTCCTTCTACTCTAAGGAC+TGG 0.480606 4_4:-67120066 None:intergenic
GTAGTTATATGTTGGCCTAA+TGG 0.492948 4_4:+67122503 Msa0697140:CDS
GTTGAATGCAGTTAAATTGA+CGG 0.496062 4_4:+67122948 Msa0697140:three_prime_UTR
AGAACGCAATTGCTCTTCCC+AGG 0.498208 4_4:-67122405 None:intergenic
TTTGAGAACAATGCTTTCCT+GGG 0.499290 4_4:+67122388 Msa0697140:CDS
TTGGTAGAAGGCTCCCAAAT+TGG 0.504467 4_4:-67121655 None:intergenic
TTGATAACCTGGACGAATGT+TGG 0.506535 4_4:-67121674 None:intergenic
TGCACAAAGAACTGGTTTGG+AGG 0.514576 4_4:+67122568 Msa0697140:CDS
CTTGGTTCCGTCAACTTCTG+TGG 0.522372 4_4:+67121793 Msa0697140:CDS
TCCTCTTAACCTTGGAGAAG+TGG 0.533885 4_4:+67122481 Msa0697140:CDS
GAGAAGTGGTAGTTATATGT+TGG 0.534360 4_4:+67122495 Msa0697140:CDS
CCTTCTACCAACATTCGTCC+AGG 0.538647 4_4:+67121667 Msa0697140:CDS
CCTAATACAAAACTCAAAGA+TGG 0.543073 4_4:+67122626 Msa0697140:CDS
ATCGCAATCAAAATTAGACT+TGG 0.551458 4_4:+67121775 Msa0697140:CDS
CAGAAATATGCTGATTTGAA+AGG 0.553169 4_4:+67122974 Msa0697140:three_prime_UTR
ATCCTCATCCATAGACAGAA+TGG 0.554296 4_4:+67119897 Msa0697140:CDS
CCACGTGGTCCTCTTAACCT+TGG 0.557933 4_4:+67122473 Msa0697140:CDS
CTAGCATCCACAGAAGTTGA+CGG 0.563692 4_4:-67121800 None:intergenic
AAGAATAAGTCATTGAAGGC+TGG 0.566635 4_4:+67120039 Msa0697140:CDS
GTTGTATCTGCCGTGTTCGA+GGG 0.567185 4_4:+67121731 Msa0697140:CDS
ATCCATTCTGTCTATGGATG+AGG 0.570002 4_4:-67119899 None:intergenic
ATCCTCGTCTATAGACAGAA+TGG 0.578285 4_4:+67119939 Msa0697140:CDS
GCACAAAGAACTGGTTTGGA+GGG 0.579517 4_4:+67122569 Msa0697140:CDS
TTCCTTCTACTCTAAGGACT+GGG 0.583222 4_4:-67120065 None:intergenic
GCTCGGTAAAATTGATAACC+TGG 0.594376 4_4:-67121685 None:intergenic
GAAATAATGAGGTTGAAAGC+TGG 0.602733 4_4:+67122527 Msa0697140:CDS
CACTTGCTTGCCCTCGAACA+CGG 0.606773 4_4:-67121741 None:intergenic
GGCCTAATGGTGAAATAATG+AGG 0.617241 4_4:+67122516 Msa0697140:CDS
TGATGATAACAGCAGCAAGT+AGG 0.630310 4_4:-67120092 None:intergenic
CGTGTTCGAGGGCAAGCAAG+TGG 0.634324 4_4:+67121742 Msa0697140:CDS
ATATAACTACCACTTCTCCA+AGG 0.638921 4_4:-67122490 None:intergenic
AGCGATGGGAAGCTTATGCA+CGG 0.649071 4_4:+67120294 Msa0697140:CDS
TGAATGCAGTTAAATTGACG+GGG 0.656449 4_4:+67122950 Msa0697140:three_prime_UTR
ATCCATTCTGTCTATAGACG+AGG 0.664126 4_4:-67119941 None:intergenic
GAATGCAGTTAAATTGACGG+GGG 0.701952 4_4:+67122951 Msa0697140:three_prime_UTR
GCAAAGTTTGATGGTCCACG+TGG 0.717907 4_4:+67122458 Msa0697140:CDS
CCAAGGTTAAGAGGACCACG+TGG 0.754888 4_4:-67122473 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAAACGTTAAATATATTT+TGG + chr4_4:67121280-67121299 Msa0697140:intron 10.0%
!! ATTACCAAAAATATAAATAA+TGG - chr4_4:67122147-67122166 None:intergenic 10.0%
!! TAAATAAGATTAAAATCTAA+GGG - chr4_4:67122783-67122802 None:intergenic 10.0%
!! ATAAATAAGATTAAAATCTA+AGG - chr4_4:67122784-67122803 None:intergenic 10.0%
!! TTGTATTATCTTGAAAAATT+AGG - chr4_4:67120558-67120577 None:intergenic 15.0%
!! AACAAAATATAAAGAAAAGA+TGG - chr4_4:67120753-67120772 None:intergenic 15.0%
!!! TTTTTATTTTTTTCCTTGTT+TGG + chr4_4:67121169-67121188 Msa0697140:intron 15.0%
!!! TTATTTTTTCTTATTCTCTT+TGG + chr4_4:67121380-67121399 Msa0697140:intron 15.0%
!! ATTATTATAAATGAAGTACA+TGG + chr4_4:67121461-67121480 Msa0697140:intron 15.0%
!!! TTCTTTTTCTTAGATATAAA+CGG + chr4_4:67121565-67121584 Msa0697140:intron 15.0%
!! TGATTCTTATATTAATTGAT+TGG - chr4_4:67121937-67121956 None:intergenic 15.0%
!!! TTAACATTTTTAAAATCTAC+AGG - chr4_4:67122324-67122343 None:intergenic 15.0%
!! TAACATAAATCCATTAGAAA+TGG - chr4_4:67120132-67120151 None:intergenic 20.0%
!! GCTTAACTTAAAACATTTAT+TGG + chr4_4:67120336-67120355 Msa0697140:intron 20.0%
!!! TTGATTGGTTAAAACTAAAA+TGG - chr4_4:67120864-67120883 None:intergenic 20.0%
!! GAAACAAAAACAATGATAAA+GGG - chr4_4:67121109-67121128 None:intergenic 20.0%
!! AGAAACAAAAACAATGATAA+AGG - chr4_4:67121110-67121129 None:intergenic 20.0%
!! AAATCATTACAAGGAATTAA+GGG - chr4_4:67121355-67121374 None:intergenic 20.0%
!! ATAAAAGTCAAATCATTACA+AGG - chr4_4:67121364-67121383 None:intergenic 20.0%
!!! TTTTTTTTTGTTGGATTACA+TGG + chr4_4:67121490-67121509 Msa0697140:intron 20.0%
!!! TCTTTTTCTTAGATATAAAC+GGG + chr4_4:67121566-67121585 Msa0697140:intron 20.0%
!! CATAATATAAATATTGCTGT+GGG - chr4_4:67122118-67122137 None:intergenic 20.0%
!! ACATAATATAAATATTGCTG+TGG - chr4_4:67122119-67122138 None:intergenic 20.0%
!!! GCAACCATTATTTATATTTT+TGG + chr4_4:67122140-67122159 Msa0697140:intron 20.0%
!! TAAGAATCTAAATCATTCAT+TGG + chr4_4:67122663-67122682 Msa0697140:exon 20.0%
!! TAACGATGTAAATAATTGTA+TGG + chr4_4:67122693-67122712 Msa0697140:three_prime_UTR 20.0%
!!! TTATTGGCTAACATTAATTT+CGG + chr4_4:67122869-67122888 Msa0697140:intron 20.0%
!!! ATTACATTACATTTTTGACA+AGG - chr4_4:67123070-67123089 None:intergenic 20.0%
!! TTGGTAATTGATATGAATGT+AGG + chr4_4:67120355-67120374 Msa0697140:intron 25.0%
! AGAACTAGAATAAAGAAAGT+GGG - chr4_4:67121207-67121226 None:intergenic 25.0%
! CAAATCATTACAAGGAATTA+AGG - chr4_4:67121356-67121375 None:intergenic 25.0%
!! CTCTTTGGTTTATAGATTAA+TGG + chr4_4:67121395-67121414 Msa0697140:intron 25.0%
!!! TGGACATTCTTTTTTTTTGT+TGG + chr4_4:67121481-67121500 Msa0697140:intron 25.0%
! AATGTGTAAGAAACATAAGT+TGG - chr4_4:67121853-67121872 None:intergenic 25.0%
! AATGATAAGCAAATTCCATT+TGG - chr4_4:67121878-67121897 None:intergenic 25.0%
! ATTGGCAATTATATTTGACA+CGG - chr4_4:67121919-67121938 None:intergenic 25.0%
! TCAATTATGCATAGTGATAT+TGG - chr4_4:67122225-67122244 None:intergenic 25.0%
! TGCATAATTGACTAGAATTT+AGG + chr4_4:67122234-67122253 Msa0697140:intron 25.0%
! ACTCTATATATTCATCTTCT+AGG + chr4_4:67122358-67122377 Msa0697140:intron 25.0%
!! TATTGGCTAACATTAATTTC+GGG + chr4_4:67122870-67122889 Msa0697140:intron 25.0%
! ATTTGAAAGGAAGAAAAATG+AGG + chr4_4:67122987-67123006 Msa0697140:three_prime_UTR 25.0%
! TTTGAAAGGAAGAAAAATGA+GGG + chr4_4:67122988-67123007 Msa0697140:three_prime_UTR 25.0%
! TTCTGTGTCTTTGGAAAAAT+AGG - chr4_4:67119989-67120008 None:intergenic 30.0%
TGCAACATTTCCATTTCTAA+TGG + chr4_4:67120119-67120138 Msa0697140:intron 30.0%
!! TGATAGAAGATCATTTTTCC+AGG + chr4_4:67120268-67120287 Msa0697140:CDS 30.0%
TGTTTGTGATGTATGTTTGT+GGG + chr4_4:67120379-67120398 Msa0697140:intron 30.0%
TCTCATAGTTACTGATAAGT+GGG + chr4_4:67120479-67120498 Msa0697140:intron 30.0%
! TTGATTGGTTAAAATCCACA+TGG + chr4_4:67120815-67120834 Msa0697140:intron 30.0%
! TGATTGGTTAAAATCCACAT+GGG + chr4_4:67120816-67120835 Msa0697140:intron 30.0%
TCTTACACACTTTCTTTGAT+TGG - chr4_4:67120879-67120898 None:intergenic 30.0%
CAGAACTAGAATAAAGAAAG+TGG - chr4_4:67121208-67121227 None:intergenic 30.0%
!! CACTTTCTTTATTCTAGTTC+TGG + chr4_4:67121206-67121225 Msa0697140:intron 30.0%
ATATTCAGATTCTTCTTGCT+CGG - chr4_4:67121705-67121724 None:intergenic 30.0%
AGCAAGAAGAATCTGAATAT+TGG + chr4_4:67121705-67121724 Msa0697140:CDS 30.0%
GCAAGAAGAATCTGAATATT+GGG + chr4_4:67121706-67121725 Msa0697140:CDS 30.0%
ATCGCAATCAAAATTAGACT+TGG + chr4_4:67121775-67121794 Msa0697140:CDS 30.0%
TTTCTTACACATTCTCCAAA+TGG + chr4_4:67121860-67121879 Msa0697140:intron 30.0%
TTAATTCCATGCTATGTAAC+TGG + chr4_4:67121975-67121994 Msa0697140:intron 30.0%
TTATAACCAGTTACATAGCA+TGG - chr4_4:67121984-67122003 None:intergenic 30.0%
TAAAGATGATTCTCATGGTT+CGG - chr4_4:67122007-67122026 None:intergenic 30.0%
GAGAATAAAGATGATTCTCA+TGG - chr4_4:67122012-67122031 None:intergenic 30.0%
TGCAATTGTGATGTAGAAAT+CGG + chr4_4:67122194-67122213 Msa0697140:intron 30.0%
TTAAAATCTACAGGAACACA+GGG - chr4_4:67122315-67122334 None:intergenic 30.0%
! TTTAAAATCTACAGGAACAC+AGG - chr4_4:67122316-67122335 None:intergenic 30.0%
AACCTCATTATTTCACCATT+AGG - chr4_4:67122521-67122540 None:intergenic 30.0%
!! CCATCTTTGAGTTTTGTATT+AGG - chr4_4:67122629-67122648 None:intergenic 30.0%
CCTAATACAAAACTCAAAGA+TGG + chr4_4:67122626-67122645 Msa0697140:CDS 30.0%
TGATGAATTCAAGAATGACA+TGG + chr4_4:67122746-67122765 Msa0697140:intron 30.0%
GCATTGCTCTAATTGTATAT+AGG + chr4_4:67122926-67122945 Msa0697140:intron 30.0%
GTTGAATGCAGTTAAATTGA+CGG + chr4_4:67122948-67122967 Msa0697140:three_prime_UTR 30.0%
TTGAATGCAGTTAAATTGAC+GGG + chr4_4:67122949-67122968 Msa0697140:three_prime_UTR 30.0%
!! CAGAAATATGCTGATTTGAA+AGG + chr4_4:67122974-67122993 Msa0697140:three_prime_UTR 30.0%
! TGTGTCTTTGGAAAAATAGG+AGG - chr4_4:67119986-67120005 None:intergenic 35.0%
! TTTTTCCAAAGACACAGAAG+AGG + chr4_4:67119990-67120009 Msa0697140:CDS 35.0%
! ATTTTCCTCTTCTGTGTCTT+TGG - chr4_4:67119998-67120017 None:intergenic 35.0%
GAGCAAGAATAAGTCATTGA+AGG + chr4_4:67120035-67120054 Msa0697140:CDS 35.0%
AAGAATAAGTCATTGAAGGC+TGG + chr4_4:67120039-67120058 Msa0697140:CDS 35.0%
AAGACGAGCTACAATCAATA+TGG - chr4_4:67120164-67120183 None:intergenic 35.0%
! ATTTTTCCAGGATAAGCGAT+GGG + chr4_4:67120280-67120299 Msa0697140:CDS 35.0%
TTATGCACGGCTATACAAAA+AGG + chr4_4:67120307-67120326 Msa0697140:CDS 35.0%
CTGTTTGTGATGTATGTTTG+TGG + chr4_4:67120378-67120397 Msa0697140:intron 35.0%
TATACTTAGAAGCCAGTAAC+TGG + chr4_4:67120413-67120432 Msa0697140:intron 35.0%
TATGAGACATACTCAACAAG+AGG - chr4_4:67120466-67120485 None:intergenic 35.0%
GTCTCATAGTTACTGATAAG+TGG + chr4_4:67120478-67120497 Msa0697140:intron 35.0%
GAAACAATGAAAACAACGTC+TGG - chr4_4:67120638-67120657 None:intergenic 35.0%
TACATATGCATTTCCTCTCT+CGG + chr4_4:67120708-67120727 Msa0697140:intron 35.0%
AAATTTATATGGGACCCATG+TGG - chr4_4:67120833-67120852 None:intergenic 35.0%
ACATGGGTCCCATATAAATT+TGG + chr4_4:67120832-67120851 Msa0697140:intron 35.0%
GGATCCCACCAAATTTATAT+GGG - chr4_4:67120843-67120862 None:intergenic 35.0%
TGGATCCCACCAAATTTATA+TGG - chr4_4:67120844-67120863 None:intergenic 35.0%
GGATGCTAGCATCAATAATA+AGG + chr4_4:67121814-67121833 Msa0697140:CDS 35.0%
CTCACTCTTGTCTCTTAAAT+TGG + chr4_4:67122029-67122048 Msa0697140:intron 35.0%
AGAATTTCTCAGTACGTGAA+TGG - chr4_4:67122068-67122087 None:intergenic 35.0%
!! TTTTGAGAACAATGCTTTCC+TGG + chr4_4:67122387-67122406 Msa0697140:CDS 35.0%
TTTGAGAACAATGCTTTCCT+GGG + chr4_4:67122388-67122407 Msa0697140:CDS 35.0%
ATATAACTACCACTTCTCCA+AGG - chr4_4:67122493-67122512 None:intergenic 35.0%
GAGAAGTGGTAGTTATATGT+TGG + chr4_4:67122495-67122514 Msa0697140:CDS 35.0%
! GTAGTTATATGTTGGCCTAA+TGG + chr4_4:67122503-67122522 Msa0697140:CDS 35.0%
GAAATAATGAGGTTGAAAGC+TGG + chr4_4:67122527-67122546 Msa0697140:CDS 35.0%
!!! GGAAAACTGGTTTTGATCAA+CGG + chr4_4:67122590-67122609 Msa0697140:CDS 35.0%
TGAATGCAGTTAAATTGACG+GGG + chr4_4:67122950-67122969 Msa0697140:three_prime_UTR 35.0%
AAGGAAGAAAAATGAGGGTT+TGG + chr4_4:67122993-67123012 Msa0697140:three_prime_UTR 35.0%
AAAATGAGGGTTTGGATTCT+TGG + chr4_4:67123001-67123020 Msa0697140:three_prime_UTR 35.0%
ATCCTCATCCATAGACAGAA+TGG + chr4_4:67119897-67119916 Msa0697140:CDS 40.0%
ATCCATTCTGTCTATGGATG+AGG - chr4_4:67119902-67119921 None:intergenic 40.0%
ATCCTCGTCTATAGACAGAA+TGG + chr4_4:67119939-67119958 Msa0697140:CDS 40.0%
ATCCATTCTGTCTATAGACG+AGG - chr4_4:67119944-67119963 None:intergenic 40.0%
! TTCCTTCTACTCTAAGGACT+GGG - chr4_4:67120068-67120087 None:intergenic 40.0%
TGATGATAACAGCAGCAAGT+AGG - chr4_4:67120095-67120114 None:intergenic 40.0%
! TACTTGCTGCTGTTATCATC+AGG + chr4_4:67120094-67120113 Msa0697140:CDS 40.0%
! CATTTTTCCAGGATAAGCGA+TGG + chr4_4:67120279-67120298 Msa0697140:CDS 40.0%
ACAATCATCCATCCAGTTAC+TGG - chr4_4:67120428-67120447 None:intergenic 40.0%
TAACTGGATGGATGATTGTG+TGG + chr4_4:67120429-67120448 Msa0697140:intron 40.0%
ATAGTTACTGATAAGTGGGC+AGG + chr4_4:67120483-67120502 Msa0697140:intron 40.0%
TAGTTACTGATAAGTGGGCA+GGG + chr4_4:67120484-67120503 Msa0697140:intron 40.0%
GAGAGAGGAAATGCATATGT+AGG - chr4_4:67120709-67120728 None:intergenic 40.0%
ACACACACACACTCTTTGAT+TGG + chr4_4:67120800-67120819 Msa0697140:intron 40.0%
TGGGTCCCATATAAATTTGG+TGG + chr4_4:67120835-67120854 Msa0697140:intron 40.0%
GGGTCCCATATAAATTTGGT+GGG + chr4_4:67120836-67120855 Msa0697140:intron 40.0%
AAATACACACTGTGTCGAGA+TGG + chr4_4:67121027-67121046 Msa0697140:intron 40.0%
TCGAGATGGTATGTATCACA+AGG + chr4_4:67121041-67121060 Msa0697140:intron 40.0%
!! GGAAGTGTGCGATTTTCAAA+TGG - chr4_4:67121088-67121107 None:intergenic 40.0%
CTAGAATAAAGAAAGTGGGC+AGG - chr4_4:67121203-67121222 None:intergenic 40.0%
! TTGATAACCTGGACGAATGT+TGG - chr4_4:67121677-67121696 None:intergenic 40.0%
! GCTCGGTAAAATTGATAACC+TGG - chr4_4:67121688-67121707 None:intergenic 40.0%
GCTGTGGGAAGATCAAATTT+CGG - chr4_4:67122103-67122122 None:intergenic 40.0%
GGCCTAATGGTGAAATAATG+AGG + chr4_4:67122516-67122535 Msa0697140:CDS 40.0%
TAGCCAATAAAATCTCAGCC+TGG - chr4_4:67122859-67122878 None:intergenic 40.0%
GAATGCAGTTAAATTGACGG+GGG + chr4_4:67122951-67122970 Msa0697140:three_prime_UTR 40.0%
GATGAGGATGCATCTGTTAC+AGG - chr4_4:67119886-67119905 None:intergenic 45.0%
AGGTGCATCCATTCTGTCTA+TGG - chr4_4:67119908-67119927 None:intergenic 45.0%
TAGGAGGATGCTTCTGTTTC+AGG - chr4_4:67119970-67119989 None:intergenic 45.0%
! CTTCCTTCTACTCTAAGGAC+TGG - chr4_4:67120069-67120088 None:intergenic 45.0%
GGTGACTTCCTTCTACTCTA+AGG - chr4_4:67120074-67120093 None:intergenic 45.0%
CTTAGAAGCCAGTAACTGGA+TGG + chr4_4:67120417-67120436 Msa0697140:intron 45.0%
! AACTGCAGTTGCTTTGCAGT+CGG + chr4_4:67120581-67120600 Msa0697140:intron 45.0%
CAGCAGTAAGCAACTTGACA+AGG - chr4_4:67120939-67120958 None:intergenic 45.0%
TGCTTCAGGTGTCTGATGAA+TGG + chr4_4:67120962-67120981 Msa0697140:intron 45.0%
TTCAGGTGTCTGATGAATGG+TGG + chr4_4:67120965-67120984 Msa0697140:intron 45.0%
GATGAATGGTGGTTTGAACC+AGG + chr4_4:67120976-67120995 Msa0697140:intron 45.0%
TCTCAGCTATGCAGAGACAA+TGG + chr4_4:67121127-67121146 Msa0697140:intron 45.0%
CTTCGCAGCAAGACCAATTT+GGG + chr4_4:67121642-67121661 Msa0697140:intron 45.0%
TTGGTAGAAGGCTCCCAAAT+TGG - chr4_4:67121658-67121677 None:intergenic 45.0%
CTAGCATCCACAGAAGTTGA+CGG - chr4_4:67121803-67121822 None:intergenic 45.0%
ACACGGCAGTAAACAGAAGA+GGG - chr4_4:67121902-67121921 None:intergenic 45.0%
! ACTTTGCGTCGTGCTTTGTT+TGG - chr4_4:67122445-67122464 None:intergenic 45.0%
AAGCACGACGCAAAGTTTGA+TGG + chr4_4:67122449-67122468 Msa0697140:CDS 45.0%
TCCTCTTAACCTTGGAGAAG+TGG + chr4_4:67122481-67122500 Msa0697140:CDS 45.0%
ACCACTTCTCCAAGGTTAAG+AGG - chr4_4:67122485-67122504 None:intergenic 45.0%
GTTGATGCTGCACAAAGAAC+TGG + chr4_4:67122560-67122579 Msa0697140:CDS 45.0%
TGCTGCACAAAGAACTGGTT+TGG + chr4_4:67122565-67122584 Msa0697140:CDS 45.0%
!! TGCACAAAGAACTGGTTTGG+AGG + chr4_4:67122568-67122587 Msa0697140:CDS 45.0%
!! GCACAAAGAACTGGTTTGGA+GGG + chr4_4:67122569-67122588 Msa0697140:CDS 45.0%
!! AACTGGTTTGGAGGGAAAAC+TGG + chr4_4:67122577-67122596 Msa0697140:CDS 45.0%
CAATAAAATCTCAGCCTGGC+CGG - chr4_4:67122855-67122874 None:intergenic 45.0%
!! TATAATAATAAAAGTTAATT+TGG - chr4_4:67121450-67121469 None:intergenic 5.0%
GACGAGGATGCTTCTGTTTC+AGG - chr4_4:67119928-67119947 None:intergenic 50.0%
CACCCAGTCCTTAGAGTAGA+AGG + chr4_4:67120063-67120082 Msa0697140:CDS 50.0%
AAGCTTCCCATCGCTTATCC+TGG - chr4_4:67120289-67120308 None:intergenic 50.0%
AGCGATGGGAAGCTTATGCA+CGG + chr4_4:67120294-67120313 Msa0697140:CDS 50.0%
!! GCTTACTGCTGACTTGCTTC+AGG + chr4_4:67120948-67120967 Msa0697140:intron 50.0%
TGGTGGTTTGAACCAGGACA+TGG + chr4_4:67120982-67121001 Msa0697140:intron 50.0%
GGTGGTTTGAACCAGGACAT+GGG + chr4_4:67120983-67121002 Msa0697140:intron 50.0%
GTGGTTTGAACCAGGACATG+GGG + chr4_4:67120984-67121003 Msa0697140:intron 50.0%
TTGAACCAGGACATGGGGAT+TGG + chr4_4:67120989-67121008 Msa0697140:intron 50.0%
GCAGGACGCATATCCAAACA+AGG - chr4_4:67121185-67121204 None:intergenic 50.0%
!! CCAAATTGGTCTTGCTGCGA+AGG - chr4_4:67121644-67121663 None:intergenic 50.0%
CCTTCGCAGCAAGACCAATT+TGG + chr4_4:67121641-67121660 Msa0697140:intron 50.0%
! CCTGGACGAATGTTGGTAGA+AGG - chr4_4:67121670-67121689 None:intergenic 50.0%
CCTTCTACCAACATTCGTCC+AGG + chr4_4:67121667-67121686 Msa0697140:CDS 50.0%
GTTGTATCTGCCGTGTTCGA+GGG + chr4_4:67121731-67121750 Msa0697140:CDS 50.0%
CTTGGTTCCGTCAACTTCTG+TGG + chr4_4:67121793-67121812 Msa0697140:CDS 50.0%
GACACGGCAGTAAACAGAAG+AGG - chr4_4:67121903-67121922 None:intergenic 50.0%
AGAACGCAATTGCTCTTCCC+AGG - chr4_4:67122408-67122427 None:intergenic 50.0%
! GCAAAGTTTGATGGTCCACG+TGG + chr4_4:67122458-67122477 Msa0697140:CDS 50.0%
ACCCATCACCCCATGATTTC+CGG + chr4_4:67122833-67122852 Msa0697140:intron 50.0%
! CGGCCAGGCTGAGATTTTAT+TGG + chr4_4:67122853-67122872 Msa0697140:intron 50.0%
TGCTTTGCAGTCGGAGACGT+AGG + chr4_4:67120590-67120609 Msa0697140:intron 55.0%
AAGATGGCACAGCAGCAGAC+TGG - chr4_4:67120737-67120756 None:intergenic 55.0%
GTACACCAATCCCCATGTCC+TGG - chr4_4:67120997-67121016 None:intergenic 55.0%
CGTTGTATCTGCCGTGTTCG+AGG + chr4_4:67121730-67121749 Msa0697140:CDS 55.0%
CACTTGCTTGCCCTCGAACA+CGG - chr4_4:67121744-67121763 None:intergenic 55.0%
CCAAGGTTAAGAGGACCACG+TGG - chr4_4:67122476-67122495 None:intergenic 55.0%
CCACGTGGTCCTCTTAACCT+TGG + chr4_4:67122473-67122492 Msa0697140:CDS 55.0%
GCCGGAAATCATGGGGTGAT+GGG - chr4_4:67122837-67122856 None:intergenic 55.0%
TCAGCCTGGCCGGAAATCAT+GGG - chr4_4:67122845-67122864 None:intergenic 55.0%
ATGGCACAGCAGCAGACTGG+TGG - chr4_4:67120734-67120753 None:intergenic 60.0%
CGTGTTCGAGGGCAAGCAAG+TGG + chr4_4:67121742-67121761 Msa0697140:CDS 60.0%
GGCCGGAAATCATGGGGTGA+TGG - chr4_4:67122838-67122857 None:intergenic 60.0%
TCACCCCATGATTTCCGGCC+AGG + chr4_4:67122838-67122857 Msa0697140:intron 60.0%
CAGCCTGGCCGGAAATCATG+GGG - chr4_4:67122844-67122863 None:intergenic 60.0%
CTCAGCCTGGCCGGAAATCA+TGG - chr4_4:67122846-67122865 None:intergenic 60.0%
AGTGGGCAGGGTCTCTCGAG+AGG + chr4_4:67120496-67120515 Msa0697140:intron 65.0%
AGCAGACTGGTGGCCGAGAG+AGG - chr4_4:67120724-67120743 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 67119874 67123139 67119874 ID=Msa0697140;Name=Msa0697140
chr4_4 mRNA 67119874 67123139 67119874 ID=Msa0697140-mRNA-1;Parent=Msa0697140;Name=Msa0697140-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.75|0.8|1|0.75|0.6|5|236|283
chr4_4 exon 67119874 67120115 67119874 ID=Msa0697140-mRNA-1:exon:19604;Parent=Msa0697140-mRNA-1
chr4_4 exon 67120199 67120328 67120199 ID=Msa0697140-mRNA-1:exon:19605;Parent=Msa0697140-mRNA-1
chr4_4 exon 67121650 67121835 67121650 ID=Msa0697140-mRNA-1:exon:19606;Parent=Msa0697140-mRNA-1
chr4_4 exon 67122380 67122713 67122380 ID=Msa0697140-mRNA-1:exon:19607;Parent=Msa0697140-mRNA-1
chr4_4 exon 67122944 67123139 67122944 ID=Msa0697140-mRNA-1:exon:19608;Parent=Msa0697140-mRNA-1
chr4_4 CDS 67119874 67120115 67119874 ID=Msa0697140-mRNA-1:cds;Parent=Msa0697140-mRNA-1
chr4_4 CDS 67120199 67120328 67120199 ID=Msa0697140-mRNA-1:cds;Parent=Msa0697140-mRNA-1
chr4_4 CDS 67121650 67121835 67121650 ID=Msa0697140-mRNA-1:cds;Parent=Msa0697140-mRNA-1
chr4_4 CDS 67122380 67122673 67122380 ID=Msa0697140-mRNA-1:cds;Parent=Msa0697140-mRNA-1
chr4_4 three_prime_UTR 67122674 67122713 67122674 ID=Msa0697140-mRNA-1:three_prime_utr;Parent=Msa0697140-mRNA-1
chr4_4 three_prime_UTR 67122944 67123139 67122944 ID=Msa0697140-mRNA-1:three_prime_utr;Parent=Msa0697140-mRNA-1
Gene Sequence

>Msa0697140

ATGGATACACCTGTAACAGATGCATCCTCATCCATAGACAGAATGGATGCACCTGAAACAGAAGCATCCTCGTCTATAGACAGAATGGATACACCTGAAACAGAAGCATCCTCCTATTTTTCCAAAGACACAGAAGAGGAAAATTCTTCAGATATTTTACTGAGCAAGAATAAGTCATTGAAGGCTGGACACCCAGTCCTTAGAGTAGAAGGAAGTCACCTACTTGCTGCTGTTATCATCAGTGTAGAAAATGAAGCAAGAGAATTGCTAGTTGCTGTAAGCTTTCAGCTAGCAGCTTCTGATGCAGTAGCTGATAGAAGATCATTTTTCCAGGATAAGCGATGGGAAGCTTATGCACGGCTATACAAAAAGCAAGACCAATTTGGGAGCCTTCTACCAACATTCGTCCAGGTTATCAATTTTACCGAGCAAGAAGAATCTGAATATTGGGACGTTGTATCTGCCGTGTTCGAGGGCAAGCAAGTGGATTGTATTGCATCGCAATCAAAATTAGACTTGGTTCCGTCAACTTCTGTGGATGCTAGCATCAATAATAAGGTGCATCTTTTGAGAACAATGCTTTCCTGGGAAGAGCAATTGCGTTCTGAAGTAAATATCAACCAAACAAAGCACGACGCAAAGTTTGATGGTCCACGTGGTCCTCTTAACCTTGGAGAAGTGGTAGTTATATGTTGGCCTAATGGTGAAATAATGAGGTTGAAAGCTGGTAGCAGTGCTGTTGATGCTGCACAAAGAACTGGTTTGGAGGGAAAACTGGTTTTGATCAACGGACATTTAGCATTGCCTAATACAAAACTCAAAGATGGCGATGTTCTTGAAGTAAGAATCTAA

Protein sequence

>Msa0697140

MDTPVTDASSSIDRMDAPETEASSSIDRMDTPETEASSYFSKDTEEENSSDILLSKNKSLKAGHPVLRVEGSHLLAAVIISVENEARELLVAVSFQLAASDAVADRRSFFQDKRWEAYARLYKKQDQFGSLLPTFVQVINFTEQEESEYWDVVSAVFEGKQVDCIASQSKLDLVPSTSVDASINNKVHLLRTMLSWEEQLRSEVNINQTKHDAKFDGPRGPLNLGEVVVICWPNGEIMRLKAGSSAVDAAQRTGLEGKLVLINGHLALPNTKLKDGDVLEVRI*