AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0335040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0335040 MtrunA17_Chr2g0319211 96.277 188 7 0 1 188 68 255 1.01e-137 384
Msa0335040 MtrunA17_Chr4g0048601 28.431 102 67 1 85 180 52 153 8.80e-14 65.9
Msa0335040 MtrunA17_Chr6g0475941 28.244 131 82 3 60 180 25 153 1.06e-13 65.5
Msa0335040 MtrunA17_Chr4g0046821 28.431 102 67 1 85 180 54 155 2.36e-13 64.7
Msa0335040 MtrunA17_Chr6g0475981 27.481 131 83 3 60 180 25 153 4.65e-13 63.9
Msa0335040 MtrunA17_Chr4g0046791 27.027 148 89 4 52 180 5 152 5.56e-13 63.5
Msa0335040 MtrunA17_Chr4g0046751 27.451 102 68 1 85 180 54 155 7.80e-13 63.5
Msa0335040 MtrunA17_Chr5g0436181 26.271 118 79 2 60 177 25 134 5.18e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0335040 AT5G54660.1 59.551 178 67 3 7 179 9 186 1.40e-73 220
Msa0335040 AT1G53540.1 27.273 121 87 1 59 179 24 143 1.29e-14 68.6
Msa0335040 AT1G07400.1 25.850 147 96 4 52 187 5 149 2.43e-12 62.4
Msa0335040 AT1G59860.1 27.723 101 72 1 87 187 48 147 2.54e-12 62.4
Msa0335040 AT4G10250.1 30.000 140 81 6 47 179 35 164 5.44e-12 62.0

Find 81 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGAAACACACCATTTATT+TGG 0.108653 2_4:+54115055 None:intergenic
AATAAATAAAAGAATGAATT+AGG 0.151925 2_4:-54112538 Msa0335040:three_prime_UTR
AAACCTGGTGCCAAGGTTTA+AGG 0.253393 2_4:-54112499 Msa0335040:three_prime_UTR
CTTCTGATGCATTTCCTCTA+TGG 0.258229 2_4:-54114922 Msa0335040:CDS
TGTGGTCATTGGTGGGAAAA+TGG 0.259017 2_4:-54113318 Msa0335040:CDS
TGAAGGCTGTAAAGATATAA+AGG 0.282854 2_4:+54115254 None:intergenic
ATTCAAGTCCATGTTGATAA+AGG 0.284747 2_4:-54113405 Msa0335040:CDS
CAGGAACAACCTACAGAAAA+AGG 0.284814 2_4:-54112598 Msa0335040:three_prime_UTR
TAAAATGCCAAAGATCAAAA+AGG 0.291755 2_4:-54113211 Msa0335040:CDS
ATGATCAAACTCCAAATAAA+TGG 0.295652 2_4:-54115066 Msa0335040:CDS
AATAAATGGTGTGTTTCATT+AGG 0.320504 2_4:-54115052 Msa0335040:CDS
AGGATGTAATGCAAAGAAAA+AGG 0.321465 2_4:-54112578 Msa0335040:three_prime_UTR
TTAGTATCAATTTGCATAGA+TGG 0.347269 2_4:+54113106 None:intergenic
CTGCATGGCATACCTTTATA+AGG 0.350403 2_4:+54112761 Msa0335030:CDS
ATAAATAAAAGAATGAATTA+GGG 0.357571 2_4:-54112537 Msa0335040:three_prime_UTR
CTTTATTATGATTCATTTGA+CGG 0.375655 2_4:+54112398 Msa0335030:intron
ACATATAGAATAAATTCCTT+TGG 0.381210 2_4:+54115225 None:intergenic
GTCATAAATATACCTTATAA+AGG 0.391212 2_4:-54112773 Msa0335040:three_prime_UTR
CTTTGCTACGCCTTAAACCT+TGG 0.421128 2_4:+54112489 Msa0335030:intron
TTCTGATGCATTTCCTCTAT+GGG 0.421633 2_4:-54114921 Msa0335040:CDS
TTCAAGTCCATGTTGATAAA+GGG 0.436330 2_4:-54113404 Msa0335040:CDS
CTCTTTCACTATAAGAGAAA+AGG 0.450666 2_4:-54115183 Msa0335040:five_prime_UTR
CGTAGCAAAGATGGAGATGT+AGG 0.455715 2_4:-54112476 Msa0335040:three_prime_UTR
TTCTTCCAATCTGCATCCTC+TGG 0.460108 2_4:+54113273 None:intergenic
GGTTTAAGGCGTAGCAAAGA+TGG 0.465677 2_4:-54112485 Msa0335040:three_prime_UTR
GATGCCAATCCACAGTGGTT+TGG 0.466039 2_4:+54114855 None:intergenic
ACTTGTAGTGAGGAGATAGA+TGG 0.471842 2_4:-54112857 Msa0335040:three_prime_UTR
GAGACTCAAAGACAAATGAT+TGG 0.472039 2_4:-54113344 Msa0335040:CDS
AGTGAGGAGATAGATGGATT+CGG 0.477558 2_4:-54112851 Msa0335040:three_prime_UTR
AAGAATTTCCCAAACAACAT+TGG 0.483083 2_4:+54114950 None:intergenic
AGATGCCAGAGGATGCAGAT+TGG 0.502624 2_4:-54113278 Msa0335040:CDS
ACGCCTTAAACCTTGGCACC+AGG 0.513507 2_4:+54112496 Msa0335030:intron
GTTGAGAAGAAATTAATGGC+TGG 0.515593 2_4:-54115118 Msa0335040:exon
AAAGATGGAGATGTAGGGTG+AGG 0.517537 2_4:-54112470 Msa0335040:three_prime_UTR
GATGGATTCGGATTACCTGC+TGG 0.521054 2_4:-54112839 Msa0335040:three_prime_UTR
GGGAAAATGGATATGTAAGA+AGG 0.521141 2_4:-54113305 Msa0335040:CDS
ATTGGAGGTGTGGTCATTGG+TGG 0.523846 2_4:-54113326 Msa0335040:CDS
CAGTCTAATAAAATTTGAGT+TGG 0.528428 2_4:-54112230 Msa0335040:three_prime_UTR
AATGGCTGGTTCTAACAAGA+AGG 0.530014 2_4:-54115104 Msa0335040:CDS
TAATAAAATTTGAGTTGGAA+AGG 0.531565 2_4:-54112225 Msa0335040:three_prime_UTR
CCAATCCACAGTGGTTTGGT+TGG 0.532581 2_4:+54114859 None:intergenic
CGACCGACTGAGAGAGATAG+TGG 0.533544 2_4:-54112351 Msa0335040:three_prime_UTR
CCAACCAAACCACTGTGGAT+TGG 0.534059 2_4:-54114859 Msa0335040:CDS
ATGATTGGAGGTGTGGTCAT+TGG 0.535519 2_4:-54113329 Msa0335040:CDS
CCACCTTCCCTTTATCAACA+TGG 0.538491 2_4:+54113397 None:intergenic
AAAATTTACAAAATAAATGC+AGG 0.540222 2_4:-54112617 Msa0335040:three_prime_UTR
TGTAATTTAAAGACGCAAGA+AGG 0.556548 2_4:-54113014 Msa0335040:intron
TTCTTCTCAACAAAATTGTG+AGG 0.559810 2_4:+54115130 None:intergenic
AAGGGTTCTGATCATGCTCA+AGG 0.575715 2_4:-54113192 Msa0335040:CDS
AAGAGAGAAACCTGGTGCCA+AGG 0.577301 2_4:-54112506 Msa0335040:three_prime_UTR
TCGTAGATGCACATGCTGCA+TGG 0.578316 2_4:+54112746 Msa0335030:CDS
TGGTTCTAACAAGAAGGTTG+AGG 0.580733 2_4:-54115098 Msa0335040:CDS
AGAAGACAAATAGACGGAAG+TGG 0.580830 2_4:+54112656 Msa0335030:CDS
CATAGAGGAAATGCATCAGA+AGG 0.582851 2_4:+54114923 None:intergenic
ATCATCAAAGAACAAATCAA+AGG 0.583609 2_4:-54112895 Msa0335040:three_prime_UTR
TCTGACTCAAACTCCCATAG+AGG 0.584106 2_4:+54114908 None:intergenic
CTTTAAATTACATCATCACA+AGG 0.584758 2_4:+54113025 None:intergenic
AAGACAAATGATTGGAGGTG+TGG 0.588863 2_4:-54113336 Msa0335040:CDS
TTGGAGGTGTGGTCATTGGT+GGG 0.595589 2_4:-54113325 Msa0335040:CDS
ATGTTAAAAGCTGAAATACC+AGG 0.596563 2_4:-54114815 Msa0335040:intron
GACTAATCCAACAGTTCACA+AGG 0.599483 2_4:-54114999 Msa0335040:CDS
ACTCAAAGACAAATGATTGG+AGG 0.607196 2_4:-54113341 Msa0335040:CDS
AATAAAAGAATGAATTAGGG+GGG 0.608704 2_4:-54112534 Msa0335040:three_prime_UTR
TTGATGAGAAGACAAATAGA+CGG 0.609352 2_4:+54112650 Msa0335030:CDS
GTAGCAAAGATGGAGATGTA+GGG 0.614679 2_4:-54112475 Msa0335040:three_prime_UTR
TAAATAAAAGAATGAATTAG+GGG 0.615766 2_4:-54112536 Msa0335040:three_prime_UTR
GGGAGAGGAAGAGAGAAACC+TGG 0.615966 2_4:-54112514 Msa0335040:three_prime_UTR
GATTGGCATCACACAGATGA+GGG 0.616017 2_4:-54114842 Msa0335040:CDS
GGGAAGGTGGTGGAAATCAG+TGG 0.621675 2_4:-54113384 Msa0335040:CDS
AAATAAAAGAATGAATTAGG+GGG 0.622070 2_4:-54112535 Msa0335040:three_prime_UTR
TGTTGATAAAGGGAAGGTGG+TGG 0.624580 2_4:-54113394 Msa0335040:CDS
CCATGTTGATAAAGGGAAGG+TGG 0.624798 2_4:-54113397 Msa0335040:CDS
GGATTGGCATCACACAGATG+AGG 0.649591 2_4:-54114843 Msa0335040:CDS
TGGTGGAAATCAGTGGACAA+TGG 0.653289 2_4:-54113377 Msa0335040:CDS
CTTCCACTATCTCTCTCAGT+CGG 0.653761 2_4:+54112348 Msa0335030:intron
AGTCCATGTTGATAAAGGGA+AGG 0.656983 2_4:-54113400 Msa0335040:CDS
TGTGAACTACACTTGTAGTG+AGG 0.683306 2_4:-54112867 Msa0335040:three_prime_UTR
TCATGCTCAAGGATAAGATG+TGG 0.683918 2_4:-54113181 Msa0335040:exon
AAGAAGGCTTGAGATGCCAG+AGG 0.727204 2_4:-54113289 Msa0335040:CDS
AAGTTCCAACCAAACCACTG+TGG 0.744020 2_4:-54114864 Msa0335040:CDS
TGTGTGATGCCAATCCACAG+TGG 0.796798 2_4:+54114850 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTCTCTTATTTTATT+AGG + chr2_4:54112789-54112808 None:intergenic 10.0%
!!! AGAAATAAAAGTTTTTTTTT+AGG - chr2_4:54112800-54112819 Msa0335040:three_prime_UTR 10.0%
!!! GAAATAAAAGTTTTTTTTTA+GGG - chr2_4:54112801-54112820 Msa0335040:three_prime_UTR 10.0%
!!! ATAATTCATATGTTTTAATA+TGG - chr2_4:54113283-54113302 Msa0335040:CDS 10.0%
!! AAAATTCGAAAAATTAAATA+GGG + chr2_4:54113961-54113980 None:intergenic 10.0%
!! TAAAATTCGAAAAATTAAAT+AGG + chr2_4:54113962-54113981 None:intergenic 10.0%
!! AATAAATAAAAGAATGAATT+AGG - chr2_4:54114984-54115003 Msa0335040:CDS 10.0%
!! ATAAATAAAAGAATGAATTA+GGG - chr2_4:54114985-54115004 Msa0335040:CDS 10.0%
!! AGTAAAATATATCTCAAAAT+TGG - chr2_4:54113053-54113072 Msa0335040:three_prime_UTR 15.0%
!! TGTTATTATTACATATAAAC+AGG - chr2_4:54113151-54113170 Msa0335040:three_prime_UTR 15.0%
!!! CTTTGTTTTGATAATAAATT+TGG - chr2_4:54113313-54113332 Msa0335040:CDS 15.0%
!! TTTAAAAATTAGCTATTAAG+GGG + chr2_4:54113517-54113536 None:intergenic 15.0%
!!! CTTTAAAAATTAGCTATTAA+GGG + chr2_4:54113518-54113537 None:intergenic 15.0%
!! TAGTCCTTATATATATTTAA+AGG - chr2_4:54113870-54113889 Msa0335040:intron 15.0%
!! AGTCCTTATATATATTTAAA+GGG - chr2_4:54113871-54113890 Msa0335040:intron 15.0%
!!! AAAGAACTCTATTTTTAAAA+AGG + chr2_4:54114581-54114600 None:intergenic 15.0%
!! AAAATTTACAAAATAAATGC+AGG - chr2_4:54114905-54114924 Msa0335040:CDS 15.0%
!! TAAATAAAAGAATGAATTAG+GGG - chr2_4:54114986-54115005 Msa0335040:CDS 15.0%
!! ACATATAGAATAAATTCCTT+TGG + chr2_4:54112300-54112319 Msa0335030:intron 20.0%
!!! TTTTGTTGAGAAGAAATTAA+TGG - chr2_4:54112400-54112419 Msa0335040:three_prime_UTR 20.0%
!! AATTGACAATGTAAAGTTAA+GGG + chr2_4:54112934-54112953 None:intergenic 20.0%
!! AAATTGACAATGTAAAGTTA+AGG + chr2_4:54112935-54112954 None:intergenic 20.0%
!! AAAATATATCTCAAAATTGG+AGG - chr2_4:54113056-54113075 Msa0335040:three_prime_UTR 20.0%
!! GAACTATTTATTAAATTTGC+AGG - chr2_4:54113078-54113097 Msa0335040:three_prime_UTR 20.0%
!!! CACAAAATTATTTGAAACAA+GGG - chr2_4:54113101-54113120 Msa0335040:three_prime_UTR 20.0%
!!! CAAAATAAAGAGATTTTATG+AGG - chr2_4:54113344-54113363 Msa0335040:CDS 20.0%
!!! AATTCAAATTCTTAGGTTTT+AGG + chr2_4:54113407-54113426 None:intergenic 20.0%
!! TTAAAAATTAGCTATTAAGG+GGG + chr2_4:54113516-54113535 None:intergenic 20.0%
!!! CCTTTAAAAATTAGCTATTA+AGG + chr2_4:54113519-54113538 None:intergenic 20.0%
!!! CCTTAATAGCTAATTTTTAA+AGG - chr2_4:54113516-54113535 Msa0335040:intron 20.0%
!!! CATTCACATTTTATATGATA+CGG + chr2_4:54113804-54113823 None:intergenic 20.0%
!! TGACCCTTTAAATATATATA+AGG + chr2_4:54113877-54113896 None:intergenic 20.0%
!!! CAAGTTTTTAAATATGGAAA+GGG + chr2_4:54113929-54113948 None:intergenic 20.0%
!! GAATTCTAAGCAAAATTATA+GGG + chr2_4:54113997-54114016 None:intergenic 20.0%
!! AGAATTCTAAGCAAAATTAT+AGG + chr2_4:54113998-54114017 None:intergenic 20.0%
!! GTCATAAATATACCTTATAA+AGG - chr2_4:54114749-54114768 Msa0335040:intron 20.0%
!! AAATAAAAGAATGAATTAGG+GGG - chr2_4:54114987-54115006 Msa0335040:CDS 20.0%
!! CTTTATTATGATTCATTTGA+CGG + chr2_4:54115127-54115146 None:intergenic 20.0%
!!! TAATAAAATTTGAGTTGGAA+AGG - chr2_4:54115297-54115316 Msa0335040:five_prime_UTR 20.0%
!!! AATTCCTTTGGAATTTTTGA+AGG + chr2_4:54112288-54112307 Msa0335030:intron 25.0%
! ATGATCAAACTCCAAATAAA+TGG - chr2_4:54112456-54112475 Msa0335040:three_prime_UTR 25.0%
! AATGAAACACACCATTTATT+TGG + chr2_4:54112470-54112489 Msa0335030:intron 25.0%
! AATAAATGGTGTGTTTCATT+AGG - chr2_4:54112470-54112489 Msa0335040:three_prime_UTR 25.0%
!!! TTTTTAGTCCAATGTTGTTT+GGG - chr2_4:54112564-54112583 Msa0335040:three_prime_UTR 25.0%
! TTTAACATCATACAGATGAA+TGG + chr2_4:54112848-54112867 None:intergenic 25.0%
!!! TACTTACTCTTTTTTTTTCC+AGG + chr2_4:54113037-54113056 None:intergenic 25.0%
!! GCACAAAATTATTTGAAACA+AGG - chr2_4:54113100-54113119 Msa0335040:three_prime_UTR 25.0%
! GAAAGATTCACTATATAACA+AGG + chr2_4:54113179-54113198 None:intergenic 25.0%
!! TTGGATAAGGAAATTTTATG+AGG - chr2_4:54113243-54113262 Msa0335040:CDS 25.0%
! GTAAGGAAATTCAAATTCTT+AGG + chr2_4:54113414-54113433 None:intergenic 25.0%
! AATTTGAATTTCCTTACCAT+AGG - chr2_4:54113417-54113436 Msa0335040:CDS 25.0%
! ATTTGAATTTCCTTACCATA+GGG - chr2_4:54113418-54113437 Msa0335040:CDS 25.0%
! TATCTTATACTATTCCATGT+GGG + chr2_4:54113469-54113488 None:intergenic 25.0%
! ATATCTTATACTATTCCATG+TGG + chr2_4:54113470-54113489 None:intergenic 25.0%
! GAATAGTATAAGATATTTGC+TGG - chr2_4:54113474-54113493 Msa0335040:intron 25.0%
! TGATAAGTATCTAAGAACTT+GGG + chr2_4:54113777-54113796 None:intergenic 25.0%
!! GCAAGTTTTTAAATATGGAA+AGG + chr2_4:54113930-54113949 None:intergenic 25.0%
!! TGTGTGCAAGTTTTTAAATA+TGG + chr2_4:54113935-54113954 None:intergenic 25.0%
! ATGAAGCAATTGAAAATACT+AGG + chr2_4:54114027-54114046 None:intergenic 25.0%
!!! TTCCTGTTTTGAAAAATAAC+TGG + chr2_4:54114083-54114102 None:intergenic 25.0%
!!! TTATTTTTCAAAACAGGAAC+TGG - chr2_4:54114084-54114103 Msa0335040:intron 25.0%
!!! TATTTTTCAAAACAGGAACT+GGG - chr2_4:54114085-54114104 Msa0335040:intron 25.0%
! TAAAATGCCAAAGATCAAAA+AGG - chr2_4:54114311-54114330 Msa0335040:intron 25.0%
! AAAATGCCAAAGATCAAAAA+GGG - chr2_4:54114312-54114331 Msa0335040:intron 25.0%
! TTAGTATCAATTTGCATAGA+TGG + chr2_4:54114419-54114438 None:intergenic 25.0%
! CTTTAAATTACATCATCACA+AGG + chr2_4:54114500-54114519 None:intergenic 25.0%
! ATCATCAAAGAACAAATCAA+AGG - chr2_4:54114627-54114646 Msa0335040:intron 25.0%
! AATAAAAGAATGAATTAGGG+GGG - chr2_4:54114988-54115007 Msa0335040:CDS 25.0%
! CAGTCTAATAAAATTTGAGT+TGG - chr2_4:54115292-54115311 Msa0335040:five_prime_UTR 25.0%
TGAAGGCTGTAAAGATATAA+AGG + chr2_4:54112271-54112290 Msa0335030:intron 30.0%
CTCTTTCACTATAAGAGAAA+AGG - chr2_4:54112339-54112358 Msa0335040:three_prime_UTR 30.0%
!!! ACAAAATTGTGAGGCTTTTT+TGG + chr2_4:54112386-54112405 Msa0335030:intron 30.0%
TTCTTCTCAACAAAATTGTG+AGG + chr2_4:54112395-54112414 Msa0335030:intron 30.0%
!! CTTTTTAGTCCAATGTTGTT+TGG - chr2_4:54112563-54112582 Msa0335040:three_prime_UTR 30.0%
AAGAATTTCCCAAACAACAT+TGG + chr2_4:54112575-54112594 Msa0335030:intron 30.0%
ATGTTAAAAGCTGAAATACC+AGG - chr2_4:54112707-54112726 Msa0335040:three_prime_UTR 30.0%
! GCATTGTAATATTTGTTACC+TGG + chr2_4:54112728-54112747 Msa0335030:CDS 30.0%
!! GCATCATCATTTTTAAATCC+TGG - chr2_4:54113016-54113035 Msa0335040:three_prime_UTR 30.0%
CAAAATTTAGCTAGTGTGTT+TGG - chr2_4:54113224-54113243 Msa0335040:CDS 30.0%
ATGAGGTAATGTAATTTCAG+AGG - chr2_4:54113260-54113279 Msa0335040:CDS 30.0%
GATAAGTATCTAAGAACTTG+GGG + chr2_4:54113776-54113795 None:intergenic 30.0%
GTGATAAGTATCTAAGAACT+TGG + chr2_4:54113778-54113797 None:intergenic 30.0%
! CACATTTTATATGATACGGA+AGG + chr2_4:54113800-54113819 None:intergenic 30.0%
!!! CACCAGTTATTTTTCAAAAC+AGG - chr2_4:54114078-54114097 Msa0335040:intron 30.0%
! ATTCAAGTCCATGTTGATAA+AGG - chr2_4:54114117-54114136 Msa0335040:intron 30.0%
! TTCAAGTCCATGTTGATAAA+GGG - chr2_4:54114118-54114137 Msa0335040:intron 30.0%
TGTAATTTAAAGACGCAAGA+AGG - chr2_4:54114508-54114527 Msa0335040:intron 30.0%
!!! GCTTTTTTTTTTTTTCCAGC+AGG + chr2_4:54114701-54114720 None:intergenic 30.0%
TTGATGAGAAGACAAATAGA+CGG + chr2_4:54114875-54114894 None:intergenic 30.0%
AGGATGTAATGCAAAGAAAA+AGG - chr2_4:54114944-54114963 Msa0335040:CDS 30.0%
! AAAAAGGCATGATTGAATAG+AGG - chr2_4:54114960-54114979 Msa0335040:CDS 30.0%
CAAGAGAAAAAGAAAACGAT+TGG + chr2_4:54115095-54115114 None:intergenic 30.0%
! TGTTTTACTATGTGTACAGT+AGG + chr2_4:54115274-54115293 None:intergenic 30.0%
ACAGCCTTCAAAAATTCCAA+AGG - chr2_4:54112281-54112300 Msa0335040:three_prime_UTR 35.0%
GTTGAGAAGAAATTAATGGC+TGG - chr2_4:54112404-54112423 Msa0335040:three_prime_UTR 35.0%
TTCTGATGCATTTCCTCTAT+GGG - chr2_4:54112601-54112620 Msa0335040:three_prime_UTR 35.0%
GTTAATCATCACACAGATGA+AGG - chr2_4:54112869-54112888 Msa0335040:three_prime_UTR 35.0%
TTAGCTAGTGTGTTTGGATA+AGG - chr2_4:54113230-54113249 Msa0335040:CDS 35.0%
ATTTCCTTACCATAGGGATT+TGG - chr2_4:54113424-54113443 Msa0335040:CDS 35.0%
TACTATTCCATGTGGGATTT+GGG + chr2_4:54113462-54113481 None:intergenic 35.0%
ATACTATTCCATGTGGGATT+TGG + chr2_4:54113463-54113482 None:intergenic 35.0%
!!! ATTTTTGAGTCATCGACATG+GGG + chr2_4:54113548-54113567 None:intergenic 35.0%
!!! CATTTTTGAGTCATCGACAT+GGG + chr2_4:54113549-54113568 None:intergenic 35.0%
AAAAATGGCAATACCTACGA+AGG - chr2_4:54113562-54113581 Msa0335040:intron 35.0%
AAAATGGCAATACCTACGAA+GGG - chr2_4:54113563-54113582 Msa0335040:intron 35.0%
GATAGGGACTTCAGTATTAT+GGG - chr2_4:54113661-54113680 Msa0335040:intron 35.0%
ATAGGGACTTCAGTATTATG+GGG - chr2_4:54113662-54113681 Msa0335040:intron 35.0%
ATCAAGTAGTATGGGATGTT+CGG - chr2_4:54113699-54113718 Msa0335040:intron 35.0%
TTAGAAGCTAGTTATCAACG+GGG + chr2_4:54113744-54113763 None:intergenic 35.0%
CTTAGAAGCTAGTTATCAAC+GGG + chr2_4:54113745-54113764 None:intergenic 35.0%
CCTTAGAAGCTAGTTATCAA+CGG + chr2_4:54113746-54113765 None:intergenic 35.0%
!! CGTTGATAACTAGCTTCTAA+GGG - chr2_4:54113744-54113763 Msa0335040:intron 35.0%
! ATTTCCACTAAGAGTGTGTT+TGG + chr2_4:54114050-54114069 None:intergenic 35.0%
GAGACTCAAAGACAAATGAT+TGG - chr2_4:54114178-54114197 Msa0335040:intron 35.0%
ACTCAAAGACAAATGATTGG+AGG - chr2_4:54114181-54114200 Msa0335040:intron 35.0%
GGGAAAATGGATATGTAAGA+AGG - chr2_4:54114217-54114236 Msa0335040:intron 35.0%
! TCAGAACCCTTTTTGATCTT+TGG + chr2_4:54114321-54114340 None:intergenic 35.0%
TAAAAAGGCAATTGCGCATT+AGG + chr2_4:54114566-54114585 None:intergenic 35.0%
! GCATTACATCCTTTTTCTGT+AGG + chr2_4:54114936-54114955 None:intergenic 35.0%
! GGTATAGAGAGAGAGTTTTG+AGG + chr2_4:54112365-54112384 Msa0335030:intron 40.0%
!! AATGGCTGGTTCTAACAAGA+AGG - chr2_4:54112418-54112437 Msa0335040:three_prime_UTR 40.0%
!! TGGTTCTAACAAGAAGGTTG+AGG - chr2_4:54112424-54112443 Msa0335040:three_prime_UTR 40.0%
GACTAATCCAACAGTTCACA+AGG - chr2_4:54112523-54112542 Msa0335040:three_prime_UTR 40.0%
CCAAAAACCTTGTGAACTGT+TGG + chr2_4:54112533-54112552 Msa0335030:intron 40.0%
! CCAACAGTTCACAAGGTTTT+TGG - chr2_4:54112530-54112549 Msa0335040:three_prime_UTR 40.0%
!!! GTTCACAAGGTTTTTGGTGA+TGG - chr2_4:54112536-54112555 Msa0335040:three_prime_UTR 40.0%
CATAGAGGAAATGCATCAGA+AGG + chr2_4:54112602-54112621 Msa0335030:intron 40.0%
CTTCTGATGCATTTCCTCTA+TGG - chr2_4:54112600-54112619 Msa0335040:three_prime_UTR 40.0%
! TAGAACCATAGAAGTGCATG+AGG - chr2_4:54113201-54113220 Msa0335040:CDS 40.0%
! TTTTGCCTCATGCACTTCTA+TGG + chr2_4:54113209-54113228 None:intergenic 40.0%
ACTACCAAATCCCTATGGTA+AGG + chr2_4:54113431-54113450 None:intergenic 40.0%
! ACCATAGGGATTTGGTAGTA+TGG - chr2_4:54113432-54113451 Msa0335040:intron 40.0%
! CCATAGGGATTTGGTAGTAT+GGG - chr2_4:54113433-54113452 Msa0335040:intron 40.0%
! CATAGGGATTTGGTAGTATG+GGG - chr2_4:54113434-54113453 Msa0335040:intron 40.0%
! GATATTTGCTGGAAGTAGCT+TGG - chr2_4:54113485-54113504 Msa0335040:intron 40.0%
!!! CCATTTTTGAGTCATCGACA+TGG + chr2_4:54113550-54113569 None:intergenic 40.0%
CCATGTCGATGACTCAAAAA+TGG - chr2_4:54113547-54113566 Msa0335040:intron 40.0%
AAATGGCAATACCTACGAAG+GGG - chr2_4:54113564-54113583 Msa0335040:intron 40.0%
!! TACTCTACGGTGCTATACTT+GGG + chr2_4:54113603-54113622 None:intergenic 40.0%
!! ATACTCTACGGTGCTATACT+TGG + chr2_4:54113604-54113623 None:intergenic 40.0%
GGATAGGGACTTCAGTATTA+TGG - chr2_4:54113660-54113679 Msa0335040:intron 40.0%
AAGTCCCACATCAAGTAGTA+TGG - chr2_4:54113690-54113709 Msa0335040:intron 40.0%
AGTCCCACATCAAGTAGTAT+GGG - chr2_4:54113691-54113710 Msa0335040:intron 40.0%
CATCCCATACTACTTGATGT+GGG + chr2_4:54113697-54113716 None:intergenic 40.0%
ACATCCCATACTACTTGATG+TGG + chr2_4:54113698-54113717 None:intergenic 40.0%
!! CCGTTGATAACTAGCTTCTA+AGG - chr2_4:54113743-54113762 Msa0335040:intron 40.0%
! TGATAACTAGCTTCTAAGGG+AGG - chr2_4:54113747-54113766 Msa0335040:intron 40.0%
! GATAACTAGCTTCTAAGGGA+GGG - chr2_4:54113748-54113767 Msa0335040:intron 40.0%
!! TATGGAAAGGGCACTTGTTA+AGG + chr2_4:54113917-54113936 None:intergenic 40.0%
TCATCCAAACACACTCTTAG+TGG - chr2_4:54114043-54114062 Msa0335040:intron 40.0%
! AGTCCATGTTGATAAAGGGA+AGG - chr2_4:54114122-54114141 Msa0335040:intron 40.0%
AAGACAAATGATTGGAGGTG+TGG - chr2_4:54114186-54114205 Msa0335040:intron 40.0%
TCATGCTCAAGGATAAGATG+TGG - chr2_4:54114341-54114360 Msa0335040:intron 40.0%
TGTGAACTACACTTGTAGTG+AGG - chr2_4:54114655-54114674 Msa0335040:intron 40.0%
ACTTGTAGTGAGGAGATAGA+TGG - chr2_4:54114665-54114684 Msa0335040:intron 40.0%
! AGTGAGGAGATAGATGGATT+CGG - chr2_4:54114671-54114690 Msa0335040:intron 40.0%
CTGCATGGCATACCTTTATA+AGG + chr2_4:54114764-54114783 None:intergenic 40.0%
AGAAGACAAATAGACGGAAG+TGG + chr2_4:54114869-54114888 None:intergenic 40.0%
CAGGAACAACCTACAGAAAA+AGG - chr2_4:54114924-54114943 Msa0335040:CDS 40.0%
GTAGCAAAGATGGAGATGTA+GGG - chr2_4:54115047-54115066 Msa0335040:CDS 40.0%
TCAGTCGGTCGTAACAAAAA+TGG + chr2_4:54115162-54115181 None:intergenic 40.0%
TCTGACTCAAACTCCCATAG+AGG + chr2_4:54112617-54112636 Msa0335030:intron 45.0%
AAGTTCCAACCAAACCACTG+TGG - chr2_4:54112658-54112677 Msa0335040:three_prime_UTR 45.0%
GATTGGCATCACACAGATGA+GGG - chr2_4:54112680-54112699 Msa0335040:three_prime_UTR 45.0%
CCCATACTACCAAATCCCTA+TGG + chr2_4:54113436-54113455 None:intergenic 45.0%
!! TTTTTAGTCAGCCCCTTCGT+AGG + chr2_4:54113578-54113597 None:intergenic 45.0%
TCAGAGACGTTGCTAGGATA+GGG - chr2_4:54113645-54113664 Msa0335040:intron 45.0%
! GATGTTCGGTGAAAGTAGCT+TGG - chr2_4:54113713-54113732 Msa0335040:intron 45.0%
CCACCTTCCCTTTATCAACA+TGG + chr2_4:54114128-54114147 None:intergenic 45.0%
! CCATGTTGATAAAGGGAAGG+TGG - chr2_4:54114125-54114144 Msa0335040:intron 45.0%
! TGTTGATAAAGGGAAGGTGG+TGG - chr2_4:54114128-54114147 Msa0335040:intron 45.0%
TGGTGGAAATCAGTGGACAA+TGG - chr2_4:54114145-54114164 Msa0335040:intron 45.0%
! ATGATTGGAGGTGTGGTCAT+TGG - chr2_4:54114193-54114212 Msa0335040:intron 45.0%
TGTGGTCATTGGTGGGAAAA+TGG - chr2_4:54114204-54114223 Msa0335040:intron 45.0%
TTCTTCCAATCTGCATCCTC+TGG + chr2_4:54114252-54114271 None:intergenic 45.0%
! AAGGGTTCTGATCATGCTCA+AGG - chr2_4:54114330-54114349 Msa0335040:intron 45.0%
AAGAATGAATTAGGGGGGAG+AGG - chr2_4:54114993-54115012 Msa0335040:CDS 45.0%
! AAACCTGGTGCCAAGGTTTA+AGG - chr2_4:54115023-54115042 Msa0335040:CDS 45.0%
CTTTGCTACGCCTTAAACCT+TGG + chr2_4:54115036-54115055 None:intergenic 45.0%
! GGTTTAAGGCGTAGCAAAGA+TGG - chr2_4:54115037-54115056 Msa0335040:CDS 45.0%
CGTAGCAAAGATGGAGATGT+AGG - chr2_4:54115046-54115065 Msa0335040:CDS 45.0%
AAAGATGGAGATGTAGGGTG+AGG - chr2_4:54115052-54115071 Msa0335040:CDS 45.0%
CTTCCACTATCTCTCTCAGT+CGG + chr2_4:54115177-54115196 None:intergenic 45.0%
!! CCAATCCACAGTGGTTTGGT+TGG + chr2_4:54112666-54112685 Msa0335030:CDS 50.0%
CCAACCAAACCACTGTGGAT+TGG - chr2_4:54112663-54112682 Msa0335040:three_prime_UTR 50.0%
GATGCCAATCCACAGTGGTT+TGG + chr2_4:54112670-54112689 Msa0335030:CDS 50.0%
TGTGTGATGCCAATCCACAG+TGG + chr2_4:54112675-54112694 Msa0335030:CDS 50.0%
! GGATTGGCATCACACAGATG+AGG - chr2_4:54112679-54112698 Msa0335040:three_prime_UTR 50.0%
ATCCTAGCAACGTCTCTGAG+AGG + chr2_4:54113644-54113663 None:intergenic 50.0%
CTCAGAGACGTTGCTAGGAT+AGG - chr2_4:54113644-54113663 Msa0335040:intron 50.0%
! ATTGGAGGTGTGGTCATTGG+TGG - chr2_4:54114196-54114215 Msa0335040:intron 50.0%
! TTGGAGGTGTGGTCATTGGT+GGG - chr2_4:54114197-54114216 Msa0335040:intron 50.0%
AAGAAGGCTTGAGATGCCAG+AGG - chr2_4:54114233-54114252 Msa0335040:intron 50.0%
AGATGCCAGAGGATGCAGAT+TGG - chr2_4:54114244-54114263 Msa0335040:intron 50.0%
! GATGGATTCGGATTACCTGC+TGG - chr2_4:54114683-54114702 Msa0335040:intron 50.0%
TCGTAGATGCACATGCTGCA+TGG + chr2_4:54114779-54114798 None:intergenic 50.0%
! AAGAGAGAAACCTGGTGCCA+AGG - chr2_4:54115016-54115035 Msa0335040:CDS 50.0%
! CACCGTAGAGTATCAGCCGT+CGG - chr2_4:54113611-54113630 Msa0335040:intron 55.0%
! ACCGTAGAGTATCAGCCGTC+GGG - chr2_4:54113612-54113631 Msa0335040:intron 55.0%
TCCCGACGGCTGATACTCTA+CGG + chr2_4:54113616-54113635 None:intergenic 55.0%
TCTGAGAGGCAACATCCCGA+CGG + chr2_4:54113630-54113649 None:intergenic 55.0%
TGCCTCTCAGAGACGTTGCT+AGG - chr2_4:54113639-54113658 Msa0335040:intron 55.0%
!! GGGAAGGTGGTGGAAATCAG+TGG - chr2_4:54114138-54114157 Msa0335040:intron 55.0%
GGGAGAGGAAGAGAGAAACC+TGG - chr2_4:54115008-54115027 Msa0335040:CDS 55.0%
ACGCCTTAAACCTTGGCACC+AGG + chr2_4:54115029-54115048 None:intergenic 55.0%
CGACCGACTGAGAGAGATAG+TGG - chr2_4:54115171-54115190 Msa0335040:five_prime_UTR 55.0%
! TGGGGTGCCCAAATCCCACA+TGG - chr2_4:54113452-54113471 Msa0335040:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 54112220 54115324 54112220 ID=Msa0335040;Name=Msa0335040
chr2_4 mRNA 54112220 54115324 54112220 ID=Msa0335040-mRNA-1;Parent=Msa0335040;Name=Msa0335040-mRNA-1;_AED=0.27;_eAED=0.27;_QI=199|1|1|1|0.5|0.33|3|873|188
chr2_4 exon 54112220 54112919 54112220 ID=Msa0335040-mRNA-1:exon:16346;Parent=Msa0335040-mRNA-1
chr2_4 exon 54113015 54113444 54113015 ID=Msa0335040-mRNA-1:exon:16345;Parent=Msa0335040-mRNA-1
chr2_4 exon 54114816 54115324 54114816 ID=Msa0335040-mRNA-1:exon:16344;Parent=Msa0335040-mRNA-1
chr2_4 five_prime_UTR 54115126 54115324 54115126 ID=Msa0335040-mRNA-1:five_prime_utr;Parent=Msa0335040-mRNA-1
chr2_4 CDS 54114816 54115125 54114816 ID=Msa0335040-mRNA-1:cds;Parent=Msa0335040-mRNA-1
chr2_4 CDS 54113188 54113444 54113188 ID=Msa0335040-mRNA-1:cds;Parent=Msa0335040-mRNA-1
chr2_4 three_prime_UTR 54113015 54113187 54113015 ID=Msa0335040-mRNA-1:three_prime_utr;Parent=Msa0335040-mRNA-1
chr2_4 three_prime_UTR 54112220 54112919 54112220 ID=Msa0335040-mRNA-1:three_prime_utr;Parent=Msa0335040-mRNA-1
Gene Sequence

>Msa0335040

ATGGCTGGTTCTAACAAGAAGGTTGAGGTGATTTTAGATGATCAAACTCCAAATAAATGGTGTGTTTCATTAGGAGATGAAACTTTCAAAAGATTCTTCAGCATGACTAATCCAACAGTTCACAAGGTTTTTGGTGATGGATCACTTTTTAGTCCAATGTTGTTTGGGAAATTCTTTGATCCTTCTGATGCATTTCCTCTATGGGAGTTTGAGTCAGATGTTTTGTTATCTCATCTAAGAAGTTCCAACCAAACCACTGTGGATTGGCATCACACAGATGAGGGCTATATGTTAAAAGCTGAAATACCAGGAACTGGGAAAAACAACATTCAAGTCCATGTTGATAAAGGGAAGGTGGTGGAAATCAGTGGACAATGGAAGCAGCAAAGAGACTCAAAGACAAATGATTGGAGGTGTGGTCATTGGTGGGAAAATGGATATGTAAGAAGGCTTGAGATGCCAGAGGATGCAGATTGGAAGAATATACAAGCATTCATATATAATGACATATTCTTAGAAATTAAAATGCCAAAGATCAAAAAGGGTTCTGATCATGCTCAAGGATAA

Protein sequence

>Msa0335040

MAGSNKKVEVILDDQTPNKWCVSLGDETFKRFFSMTNPTVHKVFGDGSLFSPMLFGKFFDPSDAFPLWEFESDVLLSHLRSSNQTTVDWHHTDEGYMLKAEIPGTGKNNIQVHVDKGKVVEISGQWKQQRDSKTNDWRCGHWWENGYVRRLEMPEDADWKNIQAFIYNDIFLEIKMPKIKKGSDHAQG*