AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0296560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0296560 MtrunA17_Chr2g0319211 96.277 188 7 0 1 188 68 255 1.01e-137 384
Msa0296560 MtrunA17_Chr4g0048601 28.431 102 67 1 85 180 52 153 8.80e-14 65.9
Msa0296560 MtrunA17_Chr6g0475941 28.244 131 82 3 60 180 25 153 1.06e-13 65.5
Msa0296560 MtrunA17_Chr4g0046821 28.431 102 67 1 85 180 54 155 2.36e-13 64.7
Msa0296560 MtrunA17_Chr6g0475981 27.481 131 83 3 60 180 25 153 4.65e-13 63.9
Msa0296560 MtrunA17_Chr4g0046791 27.027 148 89 4 52 180 5 152 5.56e-13 63.5
Msa0296560 MtrunA17_Chr4g0046751 27.451 102 68 1 85 180 54 155 7.80e-13 63.5
Msa0296560 MtrunA17_Chr5g0436181 26.271 118 79 2 60 177 25 134 5.18e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0296560 AT5G54660.1 59.551 178 67 3 7 179 9 186 1.40e-73 220
Msa0296560 AT1G53540.1 27.273 121 87 1 59 179 24 143 1.29e-14 68.6
Msa0296560 AT1G07400.1 25.850 147 96 4 52 187 5 149 2.43e-12 62.4
Msa0296560 AT1G59860.1 27.723 101 72 1 87 187 48 147 2.54e-12 62.4
Msa0296560 AT4G10250.1 30.000 140 81 6 47 179 35 164 5.44e-12 62.0

Find 81 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGAAACACACCATTTATT+TGG 0.108653 2_3:-49972724 None:intergenic
AATAAATAAAAGAATGAATT+AGG 0.151925 2_3:+49975246 Msa0296560:three_prime_UTR
CTTCTGATGCATTTCCTCTA+TGG 0.214801 2_3:+49972857 Msa0296560:CDS
AAACCTGGTGCCAAGGTTTA+AGG 0.253393 2_3:+49975285 Msa0296560:three_prime_UTR
TGTGGTCATTGGTGGGAAAA+TGG 0.259017 2_3:+49974457 Msa0296560:CDS
TGAAGGCTGTAAAGATATAA+AGG 0.282854 2_3:-49972525 None:intergenic
ATTCAAGTCCATGTTGATAA+AGG 0.284747 2_3:+49974370 Msa0296560:CDS
CAGGAACAACCTACAGAAAA+AGG 0.284814 2_3:+49975186 Msa0296560:three_prime_UTR
TAAAATGCCAAAGATCAAAA+AGG 0.291755 2_3:+49974564 Msa0296560:CDS
ATGATCAAACTCCAAATAAA+TGG 0.295652 2_3:+49972713 Msa0296560:CDS
AATAAATGGTGTGTTTCATT+AGG 0.320504 2_3:+49972727 Msa0296560:CDS
AGGATGTAATGCAAAGAAAA+AGG 0.321465 2_3:+49975206 Msa0296560:three_prime_UTR
TTAGTATCAATTTGCATAGA+TGG 0.347269 2_3:-49974669 None:intergenic
ATAAATAAAAGAATGAATTA+GGG 0.357571 2_3:+49975247 Msa0296560:three_prime_UTR
CTTTATTATGATTCATTTGA+CGG 0.375655 2_3:-49975386 Msa0296570:intron
CTGCAGGGCATACCTTTATA+AGG 0.380698 2_3:-49975011 Msa0296570:CDS
ACATATAGAATAAATTCCTT+TGG 0.381210 2_3:-49972554 None:intergenic
GTCATAAATATACCTTATAA+AGG 0.391212 2_3:+49974999 Msa0296560:three_prime_UTR
CTTTGCTACGCCTTAAACCT+TGG 0.421128 2_3:-49975295 Msa0296570:intron
TTCGTAGATGCACATGCTGC+AGG 0.428449 2_3:-49975027 Msa0296570:CDS
TTCAAGTCCATGTTGATAAA+GGG 0.436330 2_3:+49974371 Msa0296560:CDS
TTCTGATGCATTTCCTCTAT+GGG 0.445040 2_3:+49972858 Msa0296560:CDS
CTCTTTCACTATAAGAGAAA+AGG 0.450666 2_3:+49972596 Msa0296560:five_prime_UTR
CGTAGCAAAGATGGAGATGT+AGG 0.455715 2_3:+49975308 Msa0296560:three_prime_UTR
TTCTTCCAATCTGCATCCTC+TGG 0.460108 2_3:-49974502 None:intergenic
GGTTTAAGGCGTAGCAAAGA+TGG 0.465677 2_3:+49975299 Msa0296560:three_prime_UTR
GATGCCAATCCACAGTGGTT+TGG 0.466039 2_3:-49972924 None:intergenic
ACTTGTAGTGAGGAGATAGA+TGG 0.471842 2_3:+49974918 Msa0296560:three_prime_UTR
GAGACTCAAAGACAAATGAT+TGG 0.472039 2_3:+49974431 Msa0296560:CDS
AGTGAGGAGATAGATGGATT+CGG 0.477558 2_3:+49974924 Msa0296560:three_prime_UTR
AAGAATTTCCCAAACAACAT+TGG 0.483083 2_3:-49972829 None:intergenic
CGACCGACTGAGAGAGATAG+TGG 0.491403 2_3:+49975433 Msa0296560:three_prime_UTR
AGATGCCAGAGGATGCAGAT+TGG 0.502624 2_3:+49974497 Msa0296560:CDS
ACGCCTTAAACCTTGGCACC+AGG 0.513507 2_3:-49975288 Msa0296570:intron
AAAGATGGAGATGTAGGGTG+AGG 0.517537 2_3:+49975314 Msa0296560:three_prime_UTR
GATGGATTCGGATTACCTGC+TGG 0.521054 2_3:+49974936 Msa0296560:three_prime_UTR
GGGAAAATGGATATGTAAGA+AGG 0.521141 2_3:+49974470 Msa0296560:CDS
ATTGGAGGTGTGGTCATTGG+TGG 0.523846 2_3:+49974449 Msa0296560:CDS
GTGGAGAAGAAATTAATGGC+TGG 0.527944 2_3:+49972661 Msa0296560:exon
CAGTCTAATAAAATTTGAGT+TGG 0.528428 2_3:+49975554 Msa0296560:three_prime_UTR
AATGGCTGGTTCTAACAAGA+AGG 0.530014 2_3:+49972675 Msa0296560:exon
TAATAAAATTTGAGTTGGAA+AGG 0.531565 2_3:+49975559 Msa0296560:three_prime_UTR
CCAATCCACAGTGGTTTGGT+TGG 0.532581 2_3:-49972920 None:intergenic
CCAACCAAACCACTGTGGAT+TGG 0.534059 2_3:+49972920 Msa0296560:CDS
ATGATTGGAGGTGTGGTCAT+TGG 0.535519 2_3:+49974446 Msa0296560:CDS
CCACCTTCCCTTTATCAACA+TGG 0.538491 2_3:-49974378 None:intergenic
TGTAATATAAAGACGCAAGA+AGG 0.556548 2_3:+49974761 Msa0296560:three_prime_UTR
AAGGGTTCTGATCATGCTCA+AGG 0.575715 2_3:+49974583 Msa0296560:CDS
TTCTTCTCCACAAAATTGTG+AGG 0.576342 2_3:-49972649 None:intergenic
AAGAGAGAAACCTGGTGCCA+AGG 0.577301 2_3:+49975278 Msa0296560:three_prime_UTR
TCTGACTCAAATTCCCATAG+AGG 0.580656 2_3:-49972871 None:intergenic
TGGTTCTAACAAGAAGGTTG+AGG 0.580733 2_3:+49972681 Msa0296560:CDS
AGAAGACAAATAGACGGAAG+TGG 0.580830 2_3:-49975116 Msa0296570:CDS
CATAGAGGAAATGCATCAGA+AGG 0.582851 2_3:-49972856 None:intergenic
ATCATCAAAGAACAAATCAA+AGG 0.583609 2_3:+49974880 Msa0296560:three_prime_UTR
CTTTATATTACATCATCACA+AGG 0.584758 2_3:-49974750 None:intergenic
TCGTAGATGCACATGCTGCA+GGG 0.585338 2_3:-49975026 Msa0296570:CDS
AAGACAAATGATTGGAGGTG+TGG 0.588863 2_3:+49974439 Msa0296560:CDS
TTGGAGGTGTGGTCATTGGT+GGG 0.595589 2_3:+49974450 Msa0296560:CDS
ATGTTAAAAGCTGAAATACC+AGG 0.596563 2_3:+49972964 Msa0296560:CDS
GACTAATCCAACAGTTCACA+AGG 0.599483 2_3:+49972780 Msa0296560:CDS
ACTCAAAGACAAATGATTGG+AGG 0.607196 2_3:+49974434 Msa0296560:CDS
AATAAAAGAATGAATTAGGG+GGG 0.608704 2_3:+49975250 Msa0296560:three_prime_UTR
TTGATGAGAAGACAAATAGA+CGG 0.609352 2_3:-49975122 Msa0296570:CDS
GTAGCAAAGATGGAGATGTA+GGG 0.614679 2_3:+49975309 Msa0296560:three_prime_UTR
TAAATAAAAGAATGAATTAG+GGG 0.615766 2_3:+49975248 Msa0296560:three_prime_UTR
GGGAGAGGAAGAGAGAAACC+TGG 0.615966 2_3:+49975270 Msa0296560:three_prime_UTR
GATTGGCATCACACAGATGA+GGG 0.616017 2_3:+49972937 Msa0296560:CDS
GGGAAGGTGGTGGAAATCAG+TGG 0.621675 2_3:+49974391 Msa0296560:CDS
AAATAAAAGAATGAATTAGG+GGG 0.622070 2_3:+49975249 Msa0296560:three_prime_UTR
TGTTGATAAAGGGAAGGTGG+TGG 0.624580 2_3:+49974381 Msa0296560:CDS
CCATGTTGATAAAGGGAAGG+TGG 0.624798 2_3:+49974378 Msa0296560:CDS
GGATTGGCATCACACAGATG+AGG 0.649591 2_3:+49972936 Msa0296560:CDS
TGGTGGAAATCAGTGGACAA+TGG 0.653289 2_3:+49974398 Msa0296560:CDS
CTTCCACTATCTCTCTCAGT+CGG 0.653761 2_3:-49975436 Msa0296570:intron
AGTCCATGTTGATAAAGGGA+AGG 0.656983 2_3:+49974375 Msa0296560:CDS
TGTGAACTACACTTGTAGTG+AGG 0.683306 2_3:+49974908 Msa0296560:three_prime_UTR
TCATGCTCAAGGATAAGATG+TGG 0.683918 2_3:+49974594 Msa0296560:exon
AAGAAGGCTTGAGATGCCAG+AGG 0.727204 2_3:+49974486 Msa0296560:CDS
AAGTTCCAACCAAACCACTG+TGG 0.744020 2_3:+49972915 Msa0296560:CDS
TGTGTGATGCCAATCCACAG+TGG 0.796798 2_3:-49972929 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTCTCTTATTTTATT+AGG - chr2_3:49973046-49973065 None:intergenic 10.0%
!!! AGAAATAAAAGTTTTTTTTT+AGG + chr2_3:49973057-49973076 Msa0296560:intron 10.0%
!!! GAAATAAAAGTTTTTTTTTA+GGG + chr2_3:49973058-49973077 Msa0296560:intron 10.0%
!!! ATAATTCATATGTTTTAATA+TGG + chr2_3:49973537-49973556 Msa0296560:intron 10.0%
!! AAAATAAAAAAAATAAATGC+AGG + chr2_3:49975167-49975186 Msa0296560:three_prime_UTR 10.0%
!! AATAAATAAAAGAATGAATT+AGG + chr2_3:49975246-49975265 Msa0296560:three_prime_UTR 10.0%
!! ATAAATAAAAGAATGAATTA+GGG + chr2_3:49975247-49975266 Msa0296560:three_prime_UTR 10.0%
!! AGTAAAATATATCTCAAAAT+TGG + chr2_3:49973307-49973326 Msa0296560:intron 15.0%
!! TGTTATTATTACATATAAAC+AGG + chr2_3:49973405-49973424 Msa0296560:intron 15.0%
!!! CTTTGTTTTGATAATAAATT+TGG + chr2_3:49973567-49973586 Msa0296560:intron 15.0%
!! TAGTCCTTATATATATTTAA+AGG + chr2_3:49974124-49974143 Msa0296560:intron 15.0%
!! AGTCCTTATATATATTTAAA+GGG + chr2_3:49974125-49974144 Msa0296560:intron 15.0%
!!! AAAGAACTCTATTTTTAAAA+AGG - chr2_3:49974834-49974853 None:intergenic 15.0%
!! TAAATAAAAGAATGAATTAG+GGG + chr2_3:49975248-49975267 Msa0296560:three_prime_UTR 15.0%
!! ACATATAGAATAAATTCCTT+TGG - chr2_3:49972557-49972576 None:intergenic 20.0%
!! AATTGACAATGTAAAGTTAA+GGG - chr2_3:49973191-49973210 None:intergenic 20.0%
!! AAATTGACAATGTAAAGTTA+AGG - chr2_3:49973192-49973211 None:intergenic 20.0%
!! AAAATATATCTCAAAATTGG+AGG + chr2_3:49973310-49973329 Msa0296560:intron 20.0%
!! GAACTATTTATTAAATTTGC+AGG + chr2_3:49973332-49973351 Msa0296560:intron 20.0%
!!! CACAAAATTATTTGAAACAA+GGG + chr2_3:49973355-49973374 Msa0296560:intron 20.0%
!!! CAAAATAAAGAGATTTTATG+AGG + chr2_3:49973598-49973617 Msa0296560:intron 20.0%
!!! AATTCAAATTCTTAGGTTTT+AGG - chr2_3:49973661-49973680 None:intergenic 20.0%
!! TTTAAAAACTAGCTATTAAG+GGG - chr2_3:49973771-49973790 None:intergenic 20.0%
!!! CTTTAAAAACTAGCTATTAA+GGG - chr2_3:49973772-49973791 None:intergenic 20.0%
!!! CATTCACATTTTATATGATA+CGG - chr2_3:49974058-49974077 None:intergenic 20.0%
!! TGACCCTTTAAATATATATA+AGG - chr2_3:49974131-49974150 None:intergenic 20.0%
!!! CAAGTTTTTAAATATGGAAA+GGG - chr2_3:49974183-49974202 None:intergenic 20.0%
!! GAATTCTAAGCAAAATTATA+GGG - chr2_3:49974251-49974270 None:intergenic 20.0%
!! AGAATTCTAAGCAAAATTAT+AGG - chr2_3:49974252-49974271 None:intergenic 20.0%
!! GTCATAAATATACCTTATAA+AGG + chr2_3:49974999-49975018 Msa0296560:three_prime_UTR 20.0%
!! AAATAAAAGAATGAATTAGG+GGG + chr2_3:49975249-49975268 Msa0296560:three_prime_UTR 20.0%
!! CTTTATTATGATTCATTTGA+CGG - chr2_3:49975389-49975408 Msa0296570:intron 20.0%
!!! TAATAAAATTTGAGTTGGAA+AGG + chr2_3:49975559-49975578 Msa0296560:three_prime_UTR 20.0%
!!! AATTCCTTTGGAATTTTTGA+AGG - chr2_3:49972545-49972564 None:intergenic 25.0%
!! TTTTGTGGAGAAGAAATTAA+TGG + chr2_3:49972657-49972676 Msa0296560:exon 25.0%
! ATGATCAAACTCCAAATAAA+TGG + chr2_3:49972713-49972732 Msa0296560:CDS 25.0%
! AATGAAACACACCATTTATT+TGG - chr2_3:49972727-49972746 None:intergenic 25.0%
! AATAAATGGTGTGTTTCATT+AGG + chr2_3:49972727-49972746 Msa0296560:CDS 25.0%
!!! TTTTTAGTCCAATGTTGTTT+GGG + chr2_3:49972821-49972840 Msa0296560:CDS 25.0%
! TTTAACATCATACAGATGAA+TGG - chr2_3:49973105-49973124 None:intergenic 25.0%
!! TTTTACTTACTCTTTTTTCC+AGG - chr2_3:49973294-49973313 None:intergenic 25.0%
!! GCACAAAATTATTTGAAACA+AGG + chr2_3:49973354-49973373 Msa0296560:intron 25.0%
! GAAAGATTCACTATATAACA+AGG - chr2_3:49973433-49973452 None:intergenic 25.0%
!! TTGGATAAGGAAATTTTATG+AGG + chr2_3:49973497-49973516 Msa0296560:intron 25.0%
! GTAAGGAAATTCAAATTCTT+AGG - chr2_3:49973668-49973687 None:intergenic 25.0%
! AATTTGAATTTCCTTACCAT+AGG + chr2_3:49973671-49973690 Msa0296560:intron 25.0%
! ATTTGAATTTCCTTACCATA+GGG + chr2_3:49973672-49973691 Msa0296560:intron 25.0%
! TATCTTATACTATTCCATGT+GGG - chr2_3:49973723-49973742 None:intergenic 25.0%
! ATATCTTATACTATTCCATG+TGG - chr2_3:49973724-49973743 None:intergenic 25.0%
! GAATAGTATAAGATATTTGC+TGG + chr2_3:49973728-49973747 Msa0296560:intron 25.0%
! TTAAAAACTAGCTATTAAGG+GGG - chr2_3:49973770-49973789 None:intergenic 25.0%
!! CCTTTAAAAACTAGCTATTA+AGG - chr2_3:49973773-49973792 None:intergenic 25.0%
!!! CCTTAATAGCTAGTTTTTAA+AGG + chr2_3:49973770-49973789 Msa0296560:intron 25.0%
! TGATAAGTATCTAAGAACTT+GGG - chr2_3:49974031-49974050 None:intergenic 25.0%
!! GCAAGTTTTTAAATATGGAA+AGG - chr2_3:49974184-49974203 None:intergenic 25.0%
!! TGTGTGCAAGTTTTTAAATA+TGG - chr2_3:49974189-49974208 None:intergenic 25.0%
!!! TTCCTGTTTTGAAAAATAAC+TGG - chr2_3:49974336-49974355 None:intergenic 25.0%
!!! TTATTTTTCAAAACAGGAAC+TGG + chr2_3:49974337-49974356 Msa0296560:intron 25.0%
!!! TATTTTTCAAAACAGGAACT+GGG + chr2_3:49974338-49974357 Msa0296560:intron 25.0%
! TAAAATGCCAAAGATCAAAA+AGG + chr2_3:49974564-49974583 Msa0296560:CDS 25.0%
! AAAATGCCAAAGATCAAAAA+GGG + chr2_3:49974565-49974584 Msa0296560:CDS 25.0%
! TTAGTATCAATTTGCATAGA+TGG - chr2_3:49974672-49974691 None:intergenic 25.0%
! CTTTATATTACATCATCACA+AGG - chr2_3:49974753-49974772 None:intergenic 25.0%
! ATCATCAAAGAACAAATCAA+AGG + chr2_3:49974880-49974899 Msa0296560:three_prime_UTR 25.0%
! AATAAAAGAATGAATTAGGG+GGG + chr2_3:49975250-49975269 Msa0296560:three_prime_UTR 25.0%
! CAGTCTAATAAAATTTGAGT+TGG + chr2_3:49975554-49975573 Msa0296560:three_prime_UTR 25.0%
TGAAGGCTGTAAAGATATAA+AGG - chr2_3:49972528-49972547 None:intergenic 30.0%
CTCTTTCACTATAAGAGAAA+AGG + chr2_3:49972596-49972615 Msa0296560:five_prime_UTR 30.0%
!!! ACAAAATTGTGAGGCTTTTT+TGG - chr2_3:49972643-49972662 None:intergenic 30.0%
! AAAAAAGCCTCACAATTTTG+TGG + chr2_3:49972642-49972661 Msa0296560:five_prime_UTR 30.0%
!! CTTTTTAGTCCAATGTTGTT+TGG + chr2_3:49972820-49972839 Msa0296560:CDS 30.0%
AAGAATTTCCCAAACAACAT+TGG - chr2_3:49972832-49972851 None:intergenic 30.0%
ATGTTAAAAGCTGAAATACC+AGG + chr2_3:49972964-49972983 Msa0296560:CDS 30.0%
! GCATTGTAATATTTGTTACC+TGG - chr2_3:49972985-49973004 None:intergenic 30.0%
!! GCATCATCATTTTTAAATCC+TGG + chr2_3:49973273-49973292 Msa0296560:intron 30.0%
CAAAATTTAGCTAGTGTGTT+TGG + chr2_3:49973478-49973497 Msa0296560:intron 30.0%
ATGAGGTAATGTAATTTCAG+AGG + chr2_3:49973514-49973533 Msa0296560:intron 30.0%
!! TTTATGAGGTTTTGTGAACA+CGG + chr2_3:49973612-49973631 Msa0296560:intron 30.0%
GATAAGTATCTAAGAACTTG+GGG - chr2_3:49974030-49974049 None:intergenic 30.0%
GTGATAAGTATCTAAGAACT+TGG - chr2_3:49974032-49974051 None:intergenic 30.0%
! CACATTTTATATGATACGGA+AGG - chr2_3:49974054-49974073 None:intergenic 30.0%
ATGAGGCAATTGAAAATACT+AGG - chr2_3:49974281-49974300 None:intergenic 30.0%
!!! CACCAGTTATTTTTCAAAAC+AGG + chr2_3:49974331-49974350 Msa0296560:intron 30.0%
! ATTCAAGTCCATGTTGATAA+AGG + chr2_3:49974370-49974389 Msa0296560:CDS 30.0%
! TTCAAGTCCATGTTGATAAA+GGG + chr2_3:49974371-49974390 Msa0296560:CDS 30.0%
TGTAATATAAAGACGCAAGA+AGG + chr2_3:49974761-49974780 Msa0296560:three_prime_UTR 30.0%
ATTACCTGCTGGAAAAAAAA+AGG + chr2_3:49974947-49974966 Msa0296560:three_prime_UTR 30.0%
TTGATGAGAAGACAAATAGA+CGG - chr2_3:49975125-49975144 Msa0296570:CDS 30.0%
AGGATGTAATGCAAAGAAAA+AGG + chr2_3:49975206-49975225 Msa0296560:three_prime_UTR 30.0%
! AAAAAGGCATGATTGAATAG+AGG + chr2_3:49975222-49975241 Msa0296560:three_prime_UTR 30.0%
CAAGAGAAAAAGAAAACGAT+TGG - chr2_3:49975357-49975376 Msa0296570:intron 30.0%
! TGTTTTACTATGTGTACAGT+AGG - chr2_3:49975536-49975555 Msa0296570:intron 30.0%
ACAGCCTTCAAAAATTCCAA+AGG + chr2_3:49972538-49972557 Msa0296560:five_prime_UTR 35.0%
TTCTTCTCCACAAAATTGTG+AGG - chr2_3:49972652-49972671 None:intergenic 35.0%
TTCTGATGCATTTCCTCTAT+GGG + chr2_3:49972858-49972877 Msa0296560:CDS 35.0%
GTTAATCATCACACAGATGA+AGG + chr2_3:49973126-49973145 Msa0296560:intron 35.0%
TTAGCTAGTGTGTTTGGATA+AGG + chr2_3:49973484-49973503 Msa0296560:intron 35.0%
ATTTCCTTACCATAGGGATT+TGG + chr2_3:49973678-49973697 Msa0296560:intron 35.0%
TACTATTCCATGTGGGATTT+GGG - chr2_3:49973716-49973735 None:intergenic 35.0%
ATACTATTCCATGTGGGATT+TGG - chr2_3:49973717-49973736 None:intergenic 35.0%
!!! ATTTTTGAGTCATCGACATG+GGG - chr2_3:49973802-49973821 None:intergenic 35.0%
!!! CATTTTTGAGTCATCGACAT+GGG - chr2_3:49973803-49973822 None:intergenic 35.0%
AAAAATGGCAATACCTACGA+AGG + chr2_3:49973816-49973835 Msa0296560:intron 35.0%
AAAATGGCAATACCTACGAA+GGG + chr2_3:49973817-49973836 Msa0296560:intron 35.0%
GATAGGGACTTCAGTATTAT+GGG + chr2_3:49973915-49973934 Msa0296560:intron 35.0%
ATAGGGACTTCAGTATTATG+GGG + chr2_3:49973916-49973935 Msa0296560:intron 35.0%
ATCAAGTAGTATGGGATGTT+CGG + chr2_3:49973953-49973972 Msa0296560:intron 35.0%
TTAGAAGCTAGTTATCAACG+GGG - chr2_3:49973998-49974017 None:intergenic 35.0%
CTTAGAAGCTAGTTATCAAC+GGG - chr2_3:49973999-49974018 None:intergenic 35.0%
CCTTAGAAGCTAGTTATCAA+CGG - chr2_3:49974000-49974019 None:intergenic 35.0%
!! CGTTGATAACTAGCTTCTAA+GGG + chr2_3:49973998-49974017 Msa0296560:intron 35.0%
!!! AATTTCCACCAAGAGTGTTT+TGG - chr2_3:49974304-49974323 None:intergenic 35.0%
GAGACTCAAAGACAAATGAT+TGG + chr2_3:49974431-49974450 Msa0296560:CDS 35.0%
ACTCAAAGACAAATGATTGG+AGG + chr2_3:49974434-49974453 Msa0296560:CDS 35.0%
GGGAAAATGGATATGTAAGA+AGG + chr2_3:49974470-49974489 Msa0296560:CDS 35.0%
! TCAGAACCCTTTTTGATCTT+TGG - chr2_3:49974574-49974593 None:intergenic 35.0%
TAAAAAGGCAATTGCGCATT+AGG - chr2_3:49974819-49974838 None:intergenic 35.0%
! GCATTACATCCTTTTTCTGT+AGG - chr2_3:49975198-49975217 Msa0296570:intron 35.0%
TCAGTCGGTCGTAAAAAAAA+TGG - chr2_3:49975424-49975443 Msa0296570:intron 35.0%
! GGTATAGAGAGAGAGTTTTG+AGG - chr2_3:49972622-49972641 None:intergenic 40.0%
GTGGAGAAGAAATTAATGGC+TGG + chr2_3:49972661-49972680 Msa0296560:exon 40.0%
!! AATGGCTGGTTCTAACAAGA+AGG + chr2_3:49972675-49972694 Msa0296560:exon 40.0%
!! TGGTTCTAACAAGAAGGTTG+AGG + chr2_3:49972681-49972700 Msa0296560:CDS 40.0%
GACTAATCCAACAGTTCACA+AGG + chr2_3:49972780-49972799 Msa0296560:CDS 40.0%
CCAAAAACCTTGTGAACTGT+TGG - chr2_3:49972790-49972809 None:intergenic 40.0%
! CCAACAGTTCACAAGGTTTT+TGG + chr2_3:49972787-49972806 Msa0296560:CDS 40.0%
!!! GTTCACAAGGTTTTTGGTGA+TGG + chr2_3:49972793-49972812 Msa0296560:CDS 40.0%
CATAGAGGAAATGCATCAGA+AGG - chr2_3:49972859-49972878 None:intergenic 40.0%
CTTCTGATGCATTTCCTCTA+TGG + chr2_3:49972857-49972876 Msa0296560:CDS 40.0%
TCTGACTCAAATTCCCATAG+AGG - chr2_3:49972874-49972893 None:intergenic 40.0%
! TAGAACCATAGAAGTGCATG+AGG + chr2_3:49973455-49973474 Msa0296560:intron 40.0%
! TTTTGCCTCATGCACTTCTA+TGG - chr2_3:49973463-49973482 None:intergenic 40.0%
ACTACCAAATCCCTATGGTA+AGG - chr2_3:49973685-49973704 None:intergenic 40.0%
! ACCATAGGGATTTGGTAGTA+TGG + chr2_3:49973686-49973705 Msa0296560:intron 40.0%
! CCATAGGGATTTGGTAGTAT+GGG + chr2_3:49973687-49973706 Msa0296560:intron 40.0%
! CATAGGGATTTGGTAGTATG+GGG + chr2_3:49973688-49973707 Msa0296560:intron 40.0%
! GATATTTGCTGGAAGTAGCT+TGG + chr2_3:49973739-49973758 Msa0296560:intron 40.0%
!!! CCATTTTTGAGTCATCGACA+TGG - chr2_3:49973804-49973823 None:intergenic 40.0%
CCATGTCGATGACTCAAAAA+TGG + chr2_3:49973801-49973820 Msa0296560:intron 40.0%
AAATGGCAATACCTACGAAG+GGG + chr2_3:49973818-49973837 Msa0296560:intron 40.0%
!! TACTCTACGGTGCTATACTT+GGG - chr2_3:49973857-49973876 None:intergenic 40.0%
!! ATACTCTACGGTGCTATACT+TGG - chr2_3:49973858-49973877 None:intergenic 40.0%
GGATAGGGACTTCAGTATTA+TGG + chr2_3:49973914-49973933 Msa0296560:intron 40.0%
AAGTCCCACATCAAGTAGTA+TGG + chr2_3:49973944-49973963 Msa0296560:intron 40.0%
AGTCCCACATCAAGTAGTAT+GGG + chr2_3:49973945-49973964 Msa0296560:intron 40.0%
CATCCCATACTACTTGATGT+GGG - chr2_3:49973951-49973970 None:intergenic 40.0%
ACATCCCATACTACTTGATG+TGG - chr2_3:49973952-49973971 None:intergenic 40.0%
!! CCGTTGATAACTAGCTTCTA+AGG + chr2_3:49973997-49974016 Msa0296560:intron 40.0%
! TGATAACTAGCTTCTAAGGG+AGG + chr2_3:49974001-49974020 Msa0296560:intron 40.0%
! GATAACTAGCTTCTAAGGGA+GGG + chr2_3:49974002-49974021 Msa0296560:intron 40.0%
!! TATGGAAAGGGCACTTGTTA+AGG - chr2_3:49974171-49974190 None:intergenic 40.0%
! AGTCCATGTTGATAAAGGGA+AGG + chr2_3:49974375-49974394 Msa0296560:CDS 40.0%
AAGACAAATGATTGGAGGTG+TGG + chr2_3:49974439-49974458 Msa0296560:CDS 40.0%
TCATGCTCAAGGATAAGATG+TGG + chr2_3:49974594-49974613 Msa0296560:exon 40.0%
TGTGAACTACACTTGTAGTG+AGG + chr2_3:49974908-49974927 Msa0296560:three_prime_UTR 40.0%
ACTTGTAGTGAGGAGATAGA+TGG + chr2_3:49974918-49974937 Msa0296560:three_prime_UTR 40.0%
! AGTGAGGAGATAGATGGATT+CGG + chr2_3:49974924-49974943 Msa0296560:three_prime_UTR 40.0%
!!! CATGCCTTTTTTTTTCCAGC+AGG - chr2_3:49974954-49974973 None:intergenic 40.0%
AGAAGACAAATAGACGGAAG+TGG - chr2_3:49975119-49975138 Msa0296570:CDS 40.0%
CAGGAACAACCTACAGAAAA+AGG + chr2_3:49975186-49975205 Msa0296560:three_prime_UTR 40.0%
GTAGCAAAGATGGAGATGTA+GGG + chr2_3:49975309-49975328 Msa0296560:three_prime_UTR 40.0%
AAGTTCCAACCAAACCACTG+TGG + chr2_3:49972915-49972934 Msa0296560:CDS 45.0%
GATTGGCATCACACAGATGA+GGG + chr2_3:49972937-49972956 Msa0296560:CDS 45.0%
CCCATACTACCAAATCCCTA+TGG - chr2_3:49973690-49973709 None:intergenic 45.0%
!! TTTTTAGTCAGCCCCTTCGT+AGG - chr2_3:49973832-49973851 None:intergenic 45.0%
TCAGAGACGTTGCTAGGATA+GGG + chr2_3:49973899-49973918 Msa0296560:intron 45.0%
! GATGTTCGGTGAAAGTAGCT+TGG + chr2_3:49973967-49973986 Msa0296560:intron 45.0%
TGCCTCATCCAAAACACTCT+TGG + chr2_3:49974293-49974312 Msa0296560:intron 45.0%
!!! CACCAAGAGTGTTTTGGATG+AGG - chr2_3:49974298-49974317 None:intergenic 45.0%
CTCATCCAAAACACTCTTGG+TGG + chr2_3:49974296-49974315 Msa0296560:intron 45.0%
CCACCTTCCCTTTATCAACA+TGG - chr2_3:49974381-49974400 None:intergenic 45.0%
! CCATGTTGATAAAGGGAAGG+TGG + chr2_3:49974378-49974397 Msa0296560:CDS 45.0%
! TGTTGATAAAGGGAAGGTGG+TGG + chr2_3:49974381-49974400 Msa0296560:CDS 45.0%
TGGTGGAAATCAGTGGACAA+TGG + chr2_3:49974398-49974417 Msa0296560:CDS 45.0%
! ATGATTGGAGGTGTGGTCAT+TGG + chr2_3:49974446-49974465 Msa0296560:CDS 45.0%
TGTGGTCATTGGTGGGAAAA+TGG + chr2_3:49974457-49974476 Msa0296560:CDS 45.0%
TTCTTCCAATCTGCATCCTC+TGG - chr2_3:49974505-49974524 None:intergenic 45.0%
! AAGGGTTCTGATCATGCTCA+AGG + chr2_3:49974583-49974602 Msa0296560:CDS 45.0%
CTGCAGGGCATACCTTTATA+AGG - chr2_3:49975014-49975033 Msa0296570:CDS 45.0%
AAGAATGAATTAGGGGGGAG+AGG + chr2_3:49975255-49975274 Msa0296560:three_prime_UTR 45.0%
! AAACCTGGTGCCAAGGTTTA+AGG + chr2_3:49975285-49975304 Msa0296560:three_prime_UTR 45.0%
CTTTGCTACGCCTTAAACCT+TGG - chr2_3:49975298-49975317 Msa0296570:intron 45.0%
! GGTTTAAGGCGTAGCAAAGA+TGG + chr2_3:49975299-49975318 Msa0296560:three_prime_UTR 45.0%
CGTAGCAAAGATGGAGATGT+AGG + chr2_3:49975308-49975327 Msa0296560:three_prime_UTR 45.0%
AAAGATGGAGATGTAGGGTG+AGG + chr2_3:49975314-49975333 Msa0296560:three_prime_UTR 45.0%
CTTCCACTATCTCTCTCAGT+CGG - chr2_3:49975439-49975458 Msa0296570:intron 45.0%
!! AAAATTTGAAAAATTAAATA+GGG - chr2_3:49974215-49974234 None:intergenic 5.0%
!! TAAAATTTGAAAAATTAAAT+AGG - chr2_3:49974216-49974235 None:intergenic 5.0%
!! CCAATCCACAGTGGTTTGGT+TGG - chr2_3:49972923-49972942 None:intergenic 50.0%
CCAACCAAACCACTGTGGAT+TGG + chr2_3:49972920-49972939 Msa0296560:CDS 50.0%
GATGCCAATCCACAGTGGTT+TGG - chr2_3:49972927-49972946 None:intergenic 50.0%
TGTGTGATGCCAATCCACAG+TGG - chr2_3:49972932-49972951 None:intergenic 50.0%
! GGATTGGCATCACACAGATG+AGG + chr2_3:49972936-49972955 Msa0296560:CDS 50.0%
ATCCTAGCAACGTCTCTGAG+AGG - chr2_3:49973898-49973917 None:intergenic 50.0%
CTCAGAGACGTTGCTAGGAT+AGG + chr2_3:49973898-49973917 Msa0296560:intron 50.0%
! ATTGGAGGTGTGGTCATTGG+TGG + chr2_3:49974449-49974468 Msa0296560:CDS 50.0%
! TTGGAGGTGTGGTCATTGGT+GGG + chr2_3:49974450-49974469 Msa0296560:CDS 50.0%
AAGAAGGCTTGAGATGCCAG+AGG + chr2_3:49974486-49974505 Msa0296560:CDS 50.0%
AGATGCCAGAGGATGCAGAT+TGG + chr2_3:49974497-49974516 Msa0296560:CDS 50.0%
! GATGGATTCGGATTACCTGC+TGG + chr2_3:49974936-49974955 Msa0296560:three_prime_UTR 50.0%
TCGTAGATGCACATGCTGCA+GGG - chr2_3:49975029-49975048 Msa0296570:CDS 50.0%
TTCGTAGATGCACATGCTGC+AGG - chr2_3:49975030-49975049 Msa0296570:CDS 50.0%
! AAGAGAGAAACCTGGTGCCA+AGG + chr2_3:49975278-49975297 Msa0296560:three_prime_UTR 50.0%
! CACCGTAGAGTATCAGCCGT+CGG + chr2_3:49973865-49973884 Msa0296560:intron 55.0%
! ACCGTAGAGTATCAGCCGTC+GGG + chr2_3:49973866-49973885 Msa0296560:intron 55.0%
TCCCGACGGCTGATACTCTA+CGG - chr2_3:49973870-49973889 None:intergenic 55.0%
TCTGAGAGGCAACATCCCGA+CGG - chr2_3:49973884-49973903 None:intergenic 55.0%
TGCCTCTCAGAGACGTTGCT+AGG + chr2_3:49973893-49973912 Msa0296560:intron 55.0%
!! GGGAAGGTGGTGGAAATCAG+TGG + chr2_3:49974391-49974410 Msa0296560:CDS 55.0%
GGGAGAGGAAGAGAGAAACC+TGG + chr2_3:49975270-49975289 Msa0296560:three_prime_UTR 55.0%
ACGCCTTAAACCTTGGCACC+AGG - chr2_3:49975291-49975310 Msa0296570:intron 55.0%
CGACCGACTGAGAGAGATAG+TGG + chr2_3:49975433-49975452 Msa0296560:three_prime_UTR 55.0%
! TGGGGTGCCCAAATCCCACA+TGG + chr2_3:49973706-49973725 Msa0296560:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 49972477 49975586 49972477 ID=Msa0296560;Name=Msa0296560
chr2_3 mRNA 49972477 49975586 49972477 ID=Msa0296560-mRNA-1;Parent=Msa0296560;Name=Msa0296560-mRNA-1;_AED=0.30;_eAED=0.30;_QI=199|1|1|1|0.5|0.33|3|882|188
chr2_3 exon 49972477 49972985 49972477 ID=Msa0296560-mRNA-1:exon:15669;Parent=Msa0296560-mRNA-1
chr2_3 exon 49974353 49974782 49974353 ID=Msa0296560-mRNA-1:exon:15670;Parent=Msa0296560-mRNA-1
chr2_3 exon 49974878 49975586 49974878 ID=Msa0296560-mRNA-1:exon:15671;Parent=Msa0296560-mRNA-1
chr2_3 five_prime_UTR 49972477 49972675 49972477 ID=Msa0296560-mRNA-1:five_prime_utr;Parent=Msa0296560-mRNA-1
chr2_3 CDS 49972676 49972985 49972676 ID=Msa0296560-mRNA-1:cds;Parent=Msa0296560-mRNA-1
chr2_3 CDS 49974353 49974609 49974353 ID=Msa0296560-mRNA-1:cds;Parent=Msa0296560-mRNA-1
chr2_3 three_prime_UTR 49974610 49974782 49974610 ID=Msa0296560-mRNA-1:three_prime_utr;Parent=Msa0296560-mRNA-1
chr2_3 three_prime_UTR 49974878 49975586 49974878 ID=Msa0296560-mRNA-1:three_prime_utr;Parent=Msa0296560-mRNA-1
Gene Sequence

>Msa0296560

ATGGCTGGTTCTAACAAGAAGGTTGAGGTGATTTTAGATGATCAAACTCCAAATAAATGGTGTGTTTCATTAGGAGATGAAACTTTCAAAAGATTCTTCAGCATGACTAATCCAACAGTTCACAAGGTTTTTGGTGATGGATCACTTTTTAGTCCAATGTTGTTTGGGAAATTCTTTGATCCTTCTGATGCATTTCCTCTATGGGAATTTGAGTCAGATGTTTTGTTATCTCATCTAAGAAGTTCCAACCAAACCACTGTGGATTGGCATCACACAGATGAGGGCTATATGTTAAAAGCTGAAATACCAGGAACTGGGAAAAACAACATTCAAGTCCATGTTGATAAAGGGAAGGTGGTGGAAATCAGTGGACAATGGAAGCAGCAAAGAGACTCAAAGACAAATGATTGGAGGTGTGGTCATTGGTGGGAAAATGGATATGTAAGAAGGCTTGAGATGCCAGAGGATGCAGATTGGAAGAATATACAAGCATTCATATATAATGACATATTCTTAGAAATTAAAATGCCAAAGATCAAAAAGGGTTCTGATCATGCTCAAGGATAA

Protein sequence

>Msa0296560

MAGSNKKVEVILDDQTPNKWCVSLGDETFKRFFSMTNPTVHKVFGDGSLFSPMLFGKFFDPSDAFPLWEFESDVLLSHLRSSNQTTVDWHHTDEGYMLKAEIPGTGKNNIQVHVDKGKVVEISGQWKQQRDSKTNDWRCGHWWENGYVRRLEMPEDADWKNIQAFIYNDIFLEIKMPKIKKGSDHAQG*