AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0866520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0866520 MtrunA17_Chr5g0434681 96.165 991 33 2 1 991 1 986 0.0 1930
Msa0866520 MtrunA17_Chr8g0376151 48.357 426 175 10 573 974 550 954 6.92e-87 300
Msa0866520 MtrunA17_Chr1g0184441 35.264 397 221 12 583 970 495 864 1.08e-39 159
Msa0866520 MtrunA17_Chr1g0184441 36.552 145 82 4 21 156 24 167 3.58e-21 99.8
Msa0866520 MtrunA17_Chr7g0274311 34.336 399 215 14 583 970 504 866 2.19e-34 142
Msa0866520 MtrunA17_Chr7g0274311 37.748 151 85 3 15 158 20 168 3.32e-24 109
Msa0866520 MtrunA17_Chr3g0093241 29.570 186 114 4 1 169 1 186 2.50e-24 108
Msa0866520 MtrunA17_Chr3g0093241 61.616 99 38 0 622 720 331 429 5.72e-23 103
Msa0866520 MtrunA17_Chr4g0059771 35.833 120 77 0 1 120 1 120 1.51e-23 105
Msa0866520 MtrunA17_Chr4g0059771 35.385 195 114 1 538 720 233 427 1.64e-16 84.0
Msa0866520 MtrunA17_Chr4g0003901 49.485 97 49 0 622 718 286 382 3.78e-16 82.4
Msa0866520 MtrunA17_Chr4g0003911 48.352 91 47 0 629 719 281 371 6.12e-16 82.4
Msa0866520 MtrunA17_Chr4g0049631 35.780 109 70 0 625 733 303 411 2.12e-14 77.0
Msa0866520 MtrunA17_Chr1g0176391 28.191 376 201 13 625 961 65 410 3.06e-14 76.6
Msa0866520 MtrunA17_Chr7g0268041 37.097 124 75 1 605 728 53 173 4.53e-14 75.9
Msa0866520 MtrunA17_Chr2g0307041 41.053 95 56 0 628 722 22 116 6.32e-14 75.1
Msa0866520 MtrunA17_Chr4g0073651 40.952 105 62 0 622 726 6 110 2.63e-12 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0866520 AT5G16720.1 46.212 396 170 7 575 969 310 663 8.95e-87 293
Msa0866520 AT5G16720.1 38.686 274 126 10 1 261 1 245 1.48e-44 172
Msa0866520 AT1G70750.1 47.453 373 155 11 604 969 400 738 5.10e-72 254
Msa0866520 AT1G70750.1 53.509 114 44 2 1 107 1 112 5.51e-30 128
Msa0866520 AT1G08800.2 45.763 177 86 5 584 758 858 1026 9.70e-30 128
Msa0866520 AT1G08800.2 36.774 155 79 5 21 165 10 155 5.44e-22 103
Msa0866520 AT1G08800.4 45.763 177 86 5 584 758 858 1026 9.70e-30 128
Msa0866520 AT1G08800.4 36.774 155 79 5 21 165 10 155 5.44e-22 103
Msa0866520 AT1G08800.3 45.763 177 86 5 584 758 858 1026 9.70e-30 128
Msa0866520 AT1G08800.3 36.774 155 79 5 21 165 10 155 5.44e-22 103
Msa0866520 AT1G08800.1 45.763 177 86 5 584 758 858 1026 9.70e-30 128
Msa0866520 AT1G08800.1 36.774 155 79 5 21 165 10 155 5.44e-22 103
Msa0866520 AT1G74830.1 40.000 210 118 2 622 831 302 503 2.36e-26 115
Msa0866520 AT1G74830.1 35.398 113 73 0 1 113 20 132 1.41e-22 103
Msa0866520 AT1G18990.1 58.559 111 44 1 608 718 289 397 1.78e-21 100
Msa0866520 AT1G18990.1 31.183 186 98 3 1 156 1 186 6.73e-17 85.5
Msa0866520 AT4G13630.2 41.135 141 69 3 589 725 195 325 1.77e-17 87.8
Msa0866520 AT4G13630.1 41.135 141 69 3 589 725 195 325 1.77e-17 87.8
Msa0866520 AT2G30690.1 30.864 162 89 7 15 169 13 158 2.45e-16 84.7
Msa0866520 AT2G30690.2 30.864 162 89 7 15 169 13 158 2.45e-16 84.7
Msa0866520 AT5G06560.1 40.000 100 60 0 625 724 74 173 9.42e-16 82.0
Msa0866520 AT3G54740.3 39.604 101 61 0 628 728 77 177 3.35e-15 79.7
Msa0866520 AT3G54740.6 39.604 101 61 0 628 728 77 177 3.35e-15 79.7
Msa0866520 AT3G54740.2 39.604 101 61 0 628 728 77 177 3.35e-15 79.7
Msa0866520 AT3G54740.5 39.604 101 61 0 628 728 77 177 3.35e-15 79.7
Msa0866520 AT3G54740.8 39.604 101 61 0 628 728 29 129 4.35e-15 79.0
Msa0866520 AT3G54740.1 39.604 101 61 0 628 728 29 129 4.35e-15 79.0
Msa0866520 AT3G54740.7 39.604 101 61 0 628 728 29 129 4.35e-15 79.0
Msa0866520 AT3G54740.4 39.604 101 61 0 628 728 29 129 4.35e-15 79.0
Msa0866520 AT1G04890.1 42.969 128 70 2 594 719 82 208 3.62e-14 76.3
Msa0866520 AT4G13160.1 47.872 94 49 0 625 718 117 210 1.67e-13 72.8

Find 154 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAACATCATTTGGTCTAAT+TGG 0.137603 5_4:+68252964 Msa0866520:three_prime_UTR
CTTATCTGTTGAAGCCTTCT+TGG 0.160198 5_4:+68248982 Msa0866520:CDS
ATCTTAGCATTACTGATTAA+TGG 0.175202 5_4:+68252617 Msa0866520:three_prime_UTR
GTGAAAATTGCTTGGCTTCT+AGG 0.206836 5_4:+68248808 Msa0866520:CDS
CTTGTTCTTCCATCATTCTT+TGG 0.217588 5_4:-68251216 None:intergenic
AAGCAACCAATTGTTCTTCT+TGG 0.220911 5_4:-68251748 None:intergenic
ATGGAGGGAGGAGGGATTTA+TGG 0.223960 5_4:+68252805 Msa0866520:three_prime_UTR
ACAAAATTTGCCAAATGTTT+TGG 0.233461 5_4:+68248621 Msa0866520:CDS
ACAGATAAGGAGGGTAAATT+TGG 0.246430 5_4:-68248968 None:intergenic
TGTTTACCTTGTGCATTATC+TGG 0.252484 5_4:-68249722 None:intergenic
TCTGCTGACCTAGGAGTTTC+AGG 0.253809 5_4:-68250905 None:intergenic
ATCCGACAATGACAGAAATT+TGG 0.280174 5_4:+68250026 Msa0866520:CDS
CAGAAATTTGGAAGCAGATA+TGG 0.283479 5_4:+68250038 Msa0866520:CDS
TTCTCTGCTTCATCTAAATA+TGG 0.289720 5_4:-68251787 None:intergenic
CAATGTGAAACCTGCATAAT+AGG 0.290320 5_4:-68249317 None:intergenic
TTTCATTTCAACAAATATAA+AGG 0.296552 5_4:+68252567 Msa0866520:three_prime_UTR
TTATATGCAGTTTGCTTTGT+TGG 0.299448 5_4:+68252662 Msa0866520:three_prime_UTR
CATGTCATGGTTTGTTAAAT+TGG 0.303214 5_4:+68252831 Msa0866520:three_prime_UTR
TCTAATCTAAGGTGTGAGTT+TGG 0.315458 5_4:+68252889 Msa0866520:three_prime_UTR
GATGGAGCTTGAAGAAAGTT+TGG 0.320863 5_4:+68249601 Msa0866520:CDS
AGAATTTCTCCAACATTGTA+TGG 0.334868 5_4:+68251981 Msa0866520:CDS
ATAGAATCTATTAACTTAAC+AGG 0.364312 5_4:-68249416 None:intergenic
AGAGGAAGTATTGATCAAAA+TGG 0.367658 5_4:+68249553 Msa0866520:CDS
TAGTGTATGCATTTCTTGAA+TGG 0.368218 5_4:+68248550 Msa0866520:CDS
CTATTCTCTTGATGCAGAAC+AGG 0.369501 5_4:-68248681 None:intergenic
AGAAGGAATTGGAAGAGTAT+AGG 0.372537 5_4:+68251314 Msa0866520:CDS
TGATGATACCGTTTCTAACT+TGG 0.372874 5_4:+68251507 Msa0866520:CDS
CTATCCATTTCACTTATCAT+AGG 0.373876 5_4:-68251889 None:intergenic
GAAGGAATTGGAAGAGTATA+GGG 0.377022 5_4:+68251315 Msa0866520:CDS
AGAGGAAAAGATAATTTCAT+TGG 0.377885 5_4:+68251633 Msa0866520:CDS
TGAATTACGCCTTAAGAACT+TGG 0.379118 5_4:+68252083 Msa0866520:CDS
GTATGTTCATATCTAATCTA+AGG 0.380787 5_4:+68252878 Msa0866520:three_prime_UTR
GCAAGAACTTGAGAAGGAAT+TGG 0.385367 5_4:+68251303 Msa0866520:CDS
GAACATCATTTGGTCTAATT+GGG 0.386597 5_4:+68252965 Msa0866520:three_prime_UTR
CACAAAGAAGACTATTCTAA+TGG 0.388166 5_4:+68251703 Msa0866520:CDS
AAAATGGAGAGAATTTAAAT+AGG 0.391672 5_4:+68248916 Msa0866520:CDS
GTAGTTCAAATTTCTGTGAA+TGG 0.392563 5_4:+68249668 Msa0866520:CDS
CATGAAACTGAAAACTCATT+TGG 0.392989 5_4:+68248840 Msa0866520:CDS
AGATCAACTCAAAGCATTAG+AGG 0.392996 5_4:+68251615 Msa0866520:CDS
ACGCTTGACTGCGGTTCAAC+TGG 0.394086 5_4:-68249524 None:intergenic
GATCATTGTCCAAGTTCTTA+AGG 0.394095 5_4:-68252092 None:intergenic
TTGTAATCATTGCCATTGTT+TGG 0.398108 5_4:-68251147 None:intergenic
CTAATCTAAGGTGTGAGTTT+GGG 0.399453 5_4:+68252890 Msa0866520:three_prime_UTR
TTCCAAATTTCTGTCATTGT+CGG 0.401114 5_4:-68250028 None:intergenic
AAACTTGAACTCTGATGAAA+AGG 0.403932 5_4:+68249223 Msa0866520:CDS
TGTATGGGATCCATACAAAA+TGG 0.406925 5_4:+68251997 Msa0866520:CDS
TTCTGATGCTCCTATTATGC+AGG 0.413743 5_4:+68249307 Msa0866520:CDS
CTCTTTGAGAAAACAGAATC+AGG 0.416556 5_4:+68250959 Msa0866520:CDS
AGTTCCTATGATAAGTGAAA+TGG 0.425926 5_4:+68251885 Msa0866520:CDS
AGATGAGAGTGAACATCATT+TGG 0.425983 5_4:+68252955 Msa0866520:three_prime_UTR
CAGATGAGATTTACGAGAAT+CGG 0.426179 5_4:-68253167 None:intergenic
TCTATATCTTTAGAAGTTGA+AGG 0.427647 5_4:+68249629 Msa0866520:CDS
AAGAAGAACAATTGGTTGCT+TGG 0.429766 5_4:+68251750 Msa0866520:CDS
ATTTGCATTTGATAGAGAAT+TGG 0.437319 5_4:+68251828 Msa0866520:CDS
GTTAGAAACGGTATCATCAT+TGG 0.443026 5_4:-68251503 None:intergenic
TAGTACTTTAGAAGAATTTG+AGG 0.444834 5_4:+68251573 Msa0866520:CDS
CAGTGTAAATGATAATGAAA+TGG 0.445770 5_4:+68250787 Msa0866520:CDS
AGCCGGTCGATTGTTAAAAC+CGG 0.449648 5_4:-68251034 None:intergenic
TTGAAGCCTTCTTGGTATGA+TGG 0.459164 5_4:+68248990 Msa0866520:CDS
TGGTTTAAGACCAAAACATT+TGG 0.460628 5_4:-68248631 None:intergenic
TTCACCAAGCAAAGACTTGT+AGG 0.462618 5_4:+68252137 Msa0866520:CDS
TGACATGCATTGACTTGAGT+TGG 0.463755 5_4:-68250531 None:intergenic
CAATCTCCAAGAAGAACAAT+TGG 0.464940 5_4:+68251742 Msa0866520:CDS
TAATATACGAGTATATAGTT+AGG 0.466405 5_4:-68253060 None:intergenic
AGCAAAGACTTGTAGGCATA+AGG 0.466944 5_4:+68252144 Msa0866520:exon
GGATTTATGGTGTCATGTCA+TGG 0.469494 5_4:+68252818 Msa0866520:three_prime_UTR
AAGATAATTTCATTGGAAGA+TGG 0.470072 5_4:+68251640 Msa0866520:CDS
ATCATCAAAATGCTCGGAAT+CGG 0.473945 5_4:+68250859 Msa0866520:CDS
GATGAGAGTTCATCAAGATA+TGG 0.474936 5_4:+68251676 Msa0866520:CDS
AGCACCGAGAGCTCTTTGTT+CGG 0.476144 5_4:-68251074 None:intergenic
GAGTTGGTTGGTTCTTCAGA+TGG 0.476219 5_4:-68250515 None:intergenic
TAAATCCCTCCTCCCTCCAT+TGG 0.478866 5_4:-68252802 None:intergenic
TATGCCTACAAGTCTTTGCT+TGG 0.481502 5_4:-68252141 None:intergenic
AACTGAACTCGATCGATCCT+CGG 0.488164 5_4:-68249198 None:intergenic
CAAGAAGGCTTCAACAGATA+AGG 0.490047 5_4:-68248981 None:intergenic
ACTCATTTGGTATGAGACAT+AGG 0.495233 5_4:+68248853 Msa0866520:CDS
TACAAGGCTGCAGGAAGAAA+AGG 0.495890 5_4:+68251165 Msa0866520:CDS
TGAATGCAACTTAACTATAG+TGG 0.498253 5_4:-68252118 None:intergenic
TGAATCATGCAAATCGAATG+AGG 0.507100 5_4:+68249454 Msa0866520:CDS
ATGTTGAGAAGAATGAAAGA+TGG 0.509499 5_4:+68251376 Msa0866520:CDS
ATAAACTTCCTGAAACTCCT+AGG 0.514133 5_4:+68250897 Msa0866520:CDS
TCTTGTTCTTGTTGCAACAC+CGG 0.514596 5_4:+68251421 Msa0866520:CDS
GGCAATGATTACAAGGCTGC+AGG 0.518083 5_4:+68251156 Msa0866520:CDS
AGGTTGATCGCGTTTATGAC+AGG 0.518142 5_4:+68251935 Msa0866520:CDS
TGATACCGTTTCTAACTTGG+AGG 0.518834 5_4:+68251510 Msa0866520:CDS
ATACAAAATGGTGGTGATGA+AGG 0.519176 5_4:+68252009 Msa0866520:CDS
TGCATTATCTGGTTCTTCTG+TGG 0.527662 5_4:-68249711 None:intergenic
TGACAGTTCATCGGTGTAGC+CGG 0.531224 5_4:-68251440 None:intergenic
AGAAAAGGCGGCAATGCAGA+TGG 0.535335 5_4:+68251180 Msa0866520:CDS
TGAGGATCTAGAGGAGGGGA+AGG 0.539564 5_4:+68249472 Msa0866520:CDS
CATTTCATTATCATTTACAC+TGG 0.540128 5_4:-68250786 None:intergenic
CCATCAATCATCAAAATGCT+CGG 0.540613 5_4:+68250853 Msa0866520:CDS
CTATATCTTTAGAAGTTGAA+GGG 0.544204 5_4:+68249630 Msa0866520:CDS
GTATGGATCCCATACAATGT+TGG 0.545411 5_4:-68251990 None:intergenic
ATGCATTGACTTGAGTTGGT+TGG 0.546919 5_4:-68250527 None:intergenic
TGTAGAGAAAACAAACATGA+TGG 0.547953 5_4:+68249583 Msa0866520:CDS
AGAGAAGCAAGAACTTGAGA+AGG 0.550787 5_4:+68251297 Msa0866520:CDS
GAAAGTGTGTATTGAAGAAG+AGG 0.550976 5_4:+68251915 Msa0866520:CDS
TCAATAGAAGATGACAAAGA+AGG 0.551727 5_4:+68249047 Msa0866520:CDS
AAATGGTGGTGATGAAGGAA+AGG 0.555471 5_4:+68252014 Msa0866520:CDS
ATCGCTGTATTCTACCTCAC+TGG 0.557721 5_4:-68251011 None:intergenic
TTGGTTGGTTCTTCAGATGG+AGG 0.560112 5_4:-68250512 None:intergenic
ATTGAATTTGAGATAAACAA+TGG 0.561453 5_4:+68249080 Msa0866520:CDS
AGCAAACTGCATATAATGAA+AGG 0.561991 5_4:-68252655 None:intergenic
GATGGAAACTATTTAAGCAA+AGG 0.562706 5_4:+68249008 Msa0866520:CDS
CTTCTCCAATGGAGGGAGGA+GGG 0.563267 5_4:+68252797 Msa0866520:three_prime_UTR
ATTACAATACCAAAGAATGA+TGG 0.564697 5_4:+68251207 Msa0866520:CDS
GAATTTCTCCAACATTGTAT+GGG 0.568122 5_4:+68251982 Msa0866520:CDS
TTTGGTATGAGACATAGGAT+TGG 0.570047 5_4:+68248858 Msa0866520:CDS
TGAGGTAGAATACAGCGATC+CGG 0.570543 5_4:+68251015 Msa0866520:CDS
ACTTCTCCAATGGAGGGAGG+AGG 0.572050 5_4:+68252796 Msa0866520:three_prime_UTR
TATCTCCTCCAAGTTAGAAA+CGG 0.572085 5_4:-68251515 None:intergenic
TATCCTCAGAGAGGTGGCCG+AGG 0.572603 5_4:+68249181 Msa0866520:CDS
TAGTTTCCATCATACCAAGA+AGG 0.574251 5_4:-68248996 None:intergenic
TGATCATGATCATGATGAAG+AGG 0.575848 5_4:+68249118 Msa0866520:CDS
TGCAACTTAACTATAGTGGA+TGG 0.575938 5_4:-68252114 None:intergenic
ATAAAATCATCAACAGCACT+TGG 0.577726 5_4:-68249275 None:intergenic
AAAGCCGAACAAAGAGCTCT+CGG 0.577763 5_4:+68251070 Msa0866520:CDS
GCAGTCAAGCGTCTTAGAAG+AGG 0.578658 5_4:+68249535 Msa0866520:CDS
TAGCATGTGTGAAAATTGCT+TGG 0.580838 5_4:+68248800 Msa0866520:CDS
GCAGCTGAGATTTCAAACCT+TGG 0.585082 5_4:+68248741 Msa0866520:CDS
GGATGGTAGCGTTGCCAGTG+AGG 0.587144 5_4:+68250997 Msa0866520:CDS
GAAGGCTTCAACAGATAAGG+AGG 0.588495 5_4:-68248978 None:intergenic
AAACAATGGCAATGATTACA+AGG 0.589570 5_4:+68251149 Msa0866520:CDS
TCGAATGAGGATCTAGAGGA+GGG 0.592079 5_4:+68249467 Msa0866520:CDS
ACTGGCAACGCTACCATCCA+CGG 0.593320 5_4:-68250993 None:intergenic
TTGGTTAGTAGCTATTGCTG+AGG 0.595521 5_4:-68251128 None:intergenic
GTTGGTGTTTCTATGTAACA+TGG 0.600046 5_4:-68248511 None:intergenic
ATCTTCTTCAAGTGATAGTG+AGG 0.602149 5_4:+68250562 Msa0866520:CDS
ATGAAAATACGCATGCATGT+AGG 0.602592 5_4:+68252696 Msa0866520:three_prime_UTR
AAGATCAACTGACAGTTCAT+CGG 0.602771 5_4:-68251449 None:intergenic
GATGATTAGAGCAGTAGCCA+AGG 0.602881 5_4:-68248758 None:intergenic
AAGCTTGTGACGATGATGAT+CGG 0.602945 5_4:+68249387 Msa0866520:CDS
ATCGAATGAGGATCTAGAGG+AGG 0.610877 5_4:+68249466 Msa0866520:CDS
AGACAACAAGTTATGTCACT+AGG 0.613304 5_4:+68253127 Msa0866520:three_prime_UTR
TGCATTGCATCTGCTGACCT+AGG 0.622751 5_4:-68250914 None:intergenic
GGAGCAGAAGAATCCGTGGA+TGG 0.629443 5_4:+68250980 Msa0866520:CDS
CGAATGAGGATCTAGAGGAG+GGG 0.631511 5_4:+68249468 Msa0866520:CDS
ATGCAATGCACTACATGCAG+AGG 0.632820 5_4:+68250927 Msa0866520:CDS
ATCAGGAGCAGAAGAATCCG+TGG 0.633581 5_4:+68250976 Msa0866520:CDS
CAAATCGAATGAGGATCTAG+AGG 0.636941 5_4:+68249463 Msa0866520:CDS
CCTCGAGAGAAAATCATGTG+TGG 0.640781 5_4:+68253005 Msa0866520:three_prime_UTR
AATAGCTACTAACCAAACAA+TGG 0.642191 5_4:+68251135 Msa0866520:CDS
AATACTTCTCCAATGGAGGG+AGG 0.662256 5_4:+68252793 Msa0866520:three_prime_UTR
TCTTCTAAGACGCTTGACTG+CGG 0.662747 5_4:-68249533 None:intergenic
GAACAAGAAAATGCTCCACC+AGG 0.665638 5_4:+68250063 Msa0866520:CDS
AAGGCTTCAACAGATAAGGA+GGG 0.667591 5_4:-68248977 None:intergenic
GATCCTCGGCCACCTCTCTG+AGG 0.673263 5_4:-68249184 None:intergenic
AAGGCTGCAGGAAGAAAAGG+CGG 0.674245 5_4:+68251168 Msa0866520:CDS
AGCCTTGAACAGAAAAGACA+AGG 0.674692 5_4:-68248654 None:intergenic
TGAATCGAGTGATGATGATG+AGG 0.693436 5_4:+68249939 Msa0866520:CDS
GAAGAACCAGATAATGCACA+AGG 0.705101 5_4:+68249716 Msa0866520:CDS
CTTGAACAGAAAAGACAAGG+TGG 0.722462 5_4:-68248651 None:intergenic
ATGGGATCCATACAAAATGG+TGG 0.735054 5_4:+68252000 Msa0866520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTTAATAAATAAAAATA+TGG - chr5_4:68252537-68252556 None:intergenic 0.0%
!!! TATTTTTATTTATTAAATAA+AGG + chr5_4:68252537-68252556 Msa0866520:three_prime_UTR 0.0%
!!! ATTTTTATTTATTAAATAAA+GGG + chr5_4:68252538-68252557 Msa0866520:three_prime_UTR 0.0%
!! TTTCATTTCAACAAATATAA+AGG + chr5_4:68252567-68252586 Msa0866520:three_prime_UTR 15.0%
!! TAATGCTAAGATTAAAAAAA+AGG - chr5_4:68252609-68252628 None:intergenic 15.0%
!!! TAGAATTACAACTATTTTGT+TGG - chr5_4:68248532-68248551 None:intergenic 20.0%
!! AAAATGGAGAGAATTTAAAT+AGG + chr5_4:68248916-68248935 Msa0866520:CDS 20.0%
!!! ATTGAATTTGAGATAAACAA+TGG + chr5_4:68249080-68249099 Msa0866520:CDS 20.0%
!! ATAGAATCTATTAACTTAAC+AGG - chr5_4:68249419-68249438 None:intergenic 20.0%
!! AATAAATTGAAAACAGTCTA+TGG - chr5_4:68250283-68250302 None:intergenic 20.0%
!! AGTTTAGATAGATTGAAAAA+AGG - chr5_4:68250732-68250751 None:intergenic 20.0%
!! AATTACATGATTGAAACAAT+TGG - chr5_4:68252414-68252433 None:intergenic 20.0%
!! TTGTTTCAATCATGTAATTA+AGG + chr5_4:68252415-68252434 Msa0866520:intron 20.0%
!!! TCATTTTTTGCAACAAAATT+TGG - chr5_4:68252769-68252788 None:intergenic 20.0%
!! TAATATACGAGTATATAGTT+AGG - chr5_4:68253063-68253082 None:intergenic 20.0%
!! TTCTTTGGTATTATGGTTTT+AGG - chr5_4:68248433-68248452 None:intergenic 25.0%
!!! GGTTTTTTTCTTTGGTATTA+TGG - chr5_4:68248440-68248459 None:intergenic 25.0%
! GGAAAAATTGGATAAAACAA+TGG + chr5_4:68248470-68248489 Msa0866520:exon 25.0%
!! ACAAAATTTGCCAAATGTTT+TGG + chr5_4:68248621-68248640 Msa0866520:CDS 25.0%
!! TTTTCAGTTTCATGATGATT+TGG - chr5_4:68248834-68248853 None:intergenic 25.0%
!! CATTTTCATCATGTTTTTCA+TGG - chr5_4:68248902-68248921 None:intergenic 25.0%
! CATGAAAAACATGATGAAAA+TGG + chr5_4:68248900-68248919 Msa0866520:CDS 25.0%
!! TCTATATCTTTAGAAGTTGA+AGG + chr5_4:68249629-68249648 Msa0866520:CDS 25.0%
!! CTATATCTTTAGAAGTTGAA+GGG + chr5_4:68249630-68249649 Msa0866520:CDS 25.0%
! TTATGAAGTTTGCAAATTCT+TGG + chr5_4:68249845-68249864 Msa0866520:intron 25.0%
!!! CTGAGAAATGAATTTTTCAA+AGG - chr5_4:68249980-68249999 None:intergenic 25.0%
! CTTAATTTATCACACATGTT+TGG + chr5_4:68250171-68250190 Msa0866520:intron 25.0%
! ATGTCAGAAGATAAAATAAG+TGG - chr5_4:68250199-68250218 None:intergenic 25.0%
!!! GTTGTTTTCATAAACTATTC+TGG - chr5_4:68250318-68250337 None:intergenic 25.0%
! CATGAATTATTAATACCGTT+TGG - chr5_4:68250462-68250481 None:intergenic 25.0%
! GTACTAGATATAAAAACTCA+CGG - chr5_4:68250640-68250659 None:intergenic 25.0%
!!! ATCATTTACACTGGTTTTAT+CGG - chr5_4:68250780-68250799 None:intergenic 25.0%
! CATTTCATTATCATTTACAC+TGG - chr5_4:68250789-68250808 None:intergenic 25.0%
!! CAGTGTAAATGATAATGAAA+TGG + chr5_4:68250787-68250806 Msa0866520:CDS 25.0%
! AATATCAGCTGAAAAAATTG+AGG + chr5_4:68250820-68250839 Msa0866520:CDS 25.0%
! ATTACAATACCAAAGAATGA+TGG + chr5_4:68251207-68251226 Msa0866520:CDS 25.0%
!! TAGTACTTTAGAAGAATTTG+AGG + chr5_4:68251573-68251592 Msa0866520:CDS 25.0%
! AGAGGAAAAGATAATTTCAT+TGG + chr5_4:68251633-68251652 Msa0866520:CDS 25.0%
! AAGATAATTTCATTGGAAGA+TGG + chr5_4:68251640-68251659 Msa0866520:CDS 25.0%
! ATTTGCATTTGATAGAGAAT+TGG + chr5_4:68251828-68251847 Msa0866520:CDS 25.0%
! GATTTAACAACTCTATTTAG+AGG - chr5_4:68252339-68252358 None:intergenic 25.0%
! TCTATCATTTAATCAAGGAT+AGG + chr5_4:68252491-68252510 Msa0866520:intron 25.0%
!! ATCTTAGCATTACTGATTAA+TGG + chr5_4:68252617-68252636 Msa0866520:three_prime_UTR 25.0%
! GTATGTTCATATCTAATCTA+AGG + chr5_4:68252878-68252897 Msa0866520:three_prime_UTR 25.0%
!!! ACTATGCTGGTTTTTTTCTT+TGG - chr5_4:68248448-68248467 None:intergenic 30.0%
AGAAAAAAACCAGCATAGTT+TGG + chr5_4:68248449-68248468 Msa0866520:five_prime_UTR 30.0%
TAGTGTATGCATTTCTTGAA+TGG + chr5_4:68248550-68248569 Msa0866520:CDS 30.0%
! TGGTTTAAGACCAAAACATT+TGG - chr5_4:68248634-68248653 None:intergenic 30.0%
CATGAAACTGAAAACTCATT+TGG + chr5_4:68248840-68248859 Msa0866520:CDS 30.0%
!!! ATAGGATTGGTTTTGTTTCA+TGG + chr5_4:68248871-68248890 Msa0866520:CDS 30.0%
!!! ATTGGTTTTGTTTCATGGTT+AGG + chr5_4:68248876-68248895 Msa0866520:CDS 30.0%
GATGGAAACTATTTAAGCAA+AGG + chr5_4:68249008-68249027 Msa0866520:CDS 30.0%
TCAATAGAAGATGACAAAGA+AGG + chr5_4:68249047-68249066 Msa0866520:CDS 30.0%
AAACTTGAACTCTGATGAAA+AGG + chr5_4:68249223-68249242 Msa0866520:CDS 30.0%
ATAAAATCATCAACAGCACT+TGG - chr5_4:68249278-68249297 None:intergenic 30.0%
! GAGAAGATTCAAACTTTTGT+CGG + chr5_4:68249494-68249513 Msa0866520:CDS 30.0%
!! AGAGGAAGTATTGATCAAAA+TGG + chr5_4:68249553-68249572 Msa0866520:CDS 30.0%
TGTAGAGAAAACAAACATGA+TGG + chr5_4:68249583-68249602 Msa0866520:CDS 30.0%
GTAGTTCAAATTTCTGTGAA+TGG + chr5_4:68249668-68249687 Msa0866520:CDS 30.0%
AACAGAAACATGTTATGCAA+AGG - chr5_4:68249808-68249827 None:intergenic 30.0%
GTTTCTGTTGAATGATCATA+TGG + chr5_4:68249819-68249838 Msa0866520:intron 30.0%
TTCCAAATTTCTGTCATTGT+CGG - chr5_4:68250031-68250050 None:intergenic 30.0%
CATTCAGATGTTTATCCAAA+CGG + chr5_4:68250444-68250463 Msa0866520:intron 30.0%
! TTCAGCTGATATTGTTTTCT+CGG - chr5_4:68250813-68250832 None:intergenic 30.0%
AATAGCTACTAACCAAACAA+TGG + chr5_4:68251135-68251154 Msa0866520:CDS 30.0%
TTGTAATCATTGCCATTGTT+TGG - chr5_4:68251150-68251169 None:intergenic 30.0%
AAACAATGGCAATGATTACA+AGG + chr5_4:68251149-68251168 Msa0866520:CDS 30.0%
AGAGTATAGGGAAAAAGTTA+TGG + chr5_4:68251327-68251346 Msa0866520:CDS 30.0%
ATGTTGAGAAGAATGAAAGA+TGG + chr5_4:68251376-68251395 Msa0866520:CDS 30.0%
CACAAAGAAGACTATTCTAA+TGG + chr5_4:68251703-68251722 Msa0866520:CDS 30.0%
TTCTCTGCTTCATCTAAATA+TGG - chr5_4:68251790-68251809 None:intergenic 30.0%
AGTTCCTATGATAAGTGAAA+TGG + chr5_4:68251885-68251904 Msa0866520:CDS 30.0%
CTATCCATTTCACTTATCAT+AGG - chr5_4:68251892-68251911 None:intergenic 30.0%
AGAATTTCTCCAACATTGTA+TGG + chr5_4:68251981-68252000 Msa0866520:CDS 30.0%
GAATTTCTCCAACATTGTAT+GGG + chr5_4:68251982-68252001 Msa0866520:CDS 30.0%
TGAATGCAACTTAACTATAG+TGG - chr5_4:68252121-68252140 None:intergenic 30.0%
TGTCATTCATGCATACTTTA+GGG - chr5_4:68252245-68252264 None:intergenic 30.0%
TTCATTTAAACAAACCCAAG+TGG - chr5_4:68252306-68252325 None:intergenic 30.0%
CCTAGTACAACTTAATGTAT+GGG + chr5_4:68252440-68252459 Msa0866520:intron 30.0%
AATGATAGAGCTGTCAATTT+AGG - chr5_4:68252480-68252499 None:intergenic 30.0%
ACAGCTCTATCATTTAATCA+AGG + chr5_4:68252486-68252505 Msa0866520:intron 30.0%
AGCAAACTGCATATAATGAA+AGG - chr5_4:68252658-68252677 None:intergenic 30.0%
! TTATATGCAGTTTGCTTTGT+TGG + chr5_4:68252662-68252681 Msa0866520:three_prime_UTR 30.0%
TGAGAAAAATACTTCTCCAA+TGG + chr5_4:68252786-68252805 Msa0866520:three_prime_UTR 30.0%
AAAAATACTTCTCCAATGGA+GGG + chr5_4:68252790-68252809 Msa0866520:three_prime_UTR 30.0%
!! CATGTCATGGTTTGTTAAAT+TGG + chr5_4:68252831-68252850 Msa0866520:three_prime_UTR 30.0%
CTATCTACAAAAATTGTGTG+AGG + chr5_4:68252913-68252932 Msa0866520:three_prime_UTR 30.0%
TGAACATCATTTGGTCTAAT+TGG + chr5_4:68252964-68252983 Msa0866520:three_prime_UTR 30.0%
GAACATCATTTGGTCTAATT+GGG + chr5_4:68252965-68252984 Msa0866520:three_prime_UTR 30.0%
! CCAATTTTTCCAAACTATGC+TGG - chr5_4:68248461-68248480 None:intergenic 35.0%
CCAGCATAGTTTGGAAAAAT+TGG + chr5_4:68248458-68248477 Msa0866520:five_prime_UTR 35.0%
! GTTGGTGTTTCTATGTAACA+TGG - chr5_4:68248514-68248533 None:intergenic 35.0%
TAGCATGTGTGAAAATTGCT+TGG + chr5_4:68248800-68248819 Msa0866520:CDS 35.0%
ACTCATTTGGTATGAGACAT+AGG + chr5_4:68248853-68248872 Msa0866520:CDS 35.0%
TTTGGTATGAGACATAGGAT+TGG + chr5_4:68248858-68248877 Msa0866520:CDS 35.0%
ACAGATAAGGAGGGTAAATT+TGG - chr5_4:68248971-68248990 None:intergenic 35.0%
TAGTTTCCATCATACCAAGA+AGG - chr5_4:68248999-68249018 None:intergenic 35.0%
TGATCATGATCATGATGAAG+AGG + chr5_4:68249118-68249137 Msa0866520:CDS 35.0%
!! TGAAAGTTTTATCCTCAGAG+AGG + chr5_4:68249172-68249191 Msa0866520:CDS 35.0%
CAATGTGAAACCTGCATAAT+AGG - chr5_4:68249320-68249339 None:intergenic 35.0%
TGAATCATGCAAATCGAATG+AGG + chr5_4:68249454-68249473 Msa0866520:CDS 35.0%
TGTTTACCTTGTGCATTATC+TGG - chr5_4:68249725-68249744 None:intergenic 35.0%
! TGCTCGATGTATAGAGTTTT+TGG + chr5_4:68249750-68249769 Msa0866520:intron 35.0%
CATGTTATGCAAAGGAAAGA+TGG - chr5_4:68249800-68249819 None:intergenic 35.0%
TCTGTTGAATGATCATATGG+TGG + chr5_4:68249822-68249841 Msa0866520:intron 35.0%
ATCCGACAATGACAGAAATT+TGG + chr5_4:68250026-68250045 Msa0866520:CDS 35.0%
CAGAAATTTGGAAGCAGATA+TGG + chr5_4:68250038-68250057 Msa0866520:CDS 35.0%
CGTTTGGATAAACATCTGAA+TGG - chr5_4:68250446-68250465 None:intergenic 35.0%
! ATCTTCTTCAAGTGATAGTG+AGG + chr5_4:68250562-68250581 Msa0866520:CDS 35.0%
AGAATTGAGTGCTTCACAAT+TGG - chr5_4:68250690-68250709 None:intergenic 35.0%
ATCAGCTGAAAAAATTGAGG+AGG + chr5_4:68250823-68250842 Msa0866520:CDS 35.0%
CCATCAATCATCAAAATGCT+CGG + chr5_4:68250853-68250872 Msa0866520:CDS 35.0%
ATCATCAAAATGCTCGGAAT+CGG + chr5_4:68250859-68250878 Msa0866520:CDS 35.0%
ATAAACTTCCTGAAACTCCT+AGG + chr5_4:68250897-68250916 Msa0866520:CDS 35.0%
! CTCTTTGAGAAAACAGAATC+AGG + chr5_4:68250959-68250978 Msa0866520:CDS 35.0%
CTTGTTCTTCCATCATTCTT+TGG - chr5_4:68251219-68251238 None:intergenic 35.0%
! AGAAGGAATTGGAAGAGTAT+AGG + chr5_4:68251314-68251333 Msa0866520:CDS 35.0%
! GAAGGAATTGGAAGAGTATA+GGG + chr5_4:68251315-68251334 Msa0866520:CDS 35.0%
AAGATCAACTGACAGTTCAT+CGG - chr5_4:68251452-68251471 None:intergenic 35.0%
GTTAGAAACGGTATCATCAT+TGG - chr5_4:68251506-68251525 None:intergenic 35.0%
TGATGATACCGTTTCTAACT+TGG + chr5_4:68251507-68251526 Msa0866520:CDS 35.0%
TATCTCCTCCAAGTTAGAAA+CGG - chr5_4:68251518-68251537 None:intergenic 35.0%
! AGATCAACTCAAAGCATTAG+AGG + chr5_4:68251615-68251634 Msa0866520:CDS 35.0%
GATGAGAGTTCATCAAGATA+TGG + chr5_4:68251676-68251695 Msa0866520:CDS 35.0%
CAATCTCCAAGAAGAACAAT+TGG + chr5_4:68251742-68251761 Msa0866520:CDS 35.0%
AAGCAACCAATTGTTCTTCT+TGG - chr5_4:68251751-68251770 None:intergenic 35.0%
AAGAAGAACAATTGGTTGCT+TGG + chr5_4:68251750-68251769 Msa0866520:CDS 35.0%
! GAAAGTGTGTATTGAAGAAG+AGG + chr5_4:68251915-68251934 Msa0866520:CDS 35.0%
TGTATGGGATCCATACAAAA+TGG + chr5_4:68251997-68252016 Msa0866520:CDS 35.0%
! TTCATCACCACCATTTTGTA+TGG - chr5_4:68252010-68252029 None:intergenic 35.0%
! ATACAAAATGGTGGTGATGA+AGG + chr5_4:68252009-68252028 Msa0866520:CDS 35.0%
TGAATTACGCCTTAAGAACT+TGG + chr5_4:68252083-68252102 Msa0866520:CDS 35.0%
GATCATTGTCCAAGTTCTTA+AGG - chr5_4:68252095-68252114 None:intergenic 35.0%
! TGCAACTTAACTATAGTGGA+TGG - chr5_4:68252117-68252136 None:intergenic 35.0%
GTCATTCATGCATACTTTAG+GGG - chr5_4:68252244-68252263 None:intergenic 35.0%
! GTGTCATTCATGCATACTTT+AGG - chr5_4:68252246-68252265 None:intergenic 35.0%
ATTTAAACAAACCCAAGTGG+AGG - chr5_4:68252303-68252322 None:intergenic 35.0%
AGTTGTTAAATCAGTCTGCT+CGG + chr5_4:68252347-68252366 Msa0866520:intron 35.0%
GCCTAGTACAACTTAATGTA+TGG + chr5_4:68252439-68252458 Msa0866520:intron 35.0%
! CCCATACATTAAGTTGTACT+AGG - chr5_4:68252443-68252462 None:intergenic 35.0%
ACTTAATGTATGGGTCCTTA+TGG + chr5_4:68252449-68252468 Msa0866520:intron 35.0%
! TCAATTTAGGATCGACCATA+AGG - chr5_4:68252467-68252486 None:intergenic 35.0%
ATGAAAATACGCATGCATGT+AGG + chr5_4:68252696-68252715 Msa0866520:three_prime_UTR 35.0%
GAAAAATACTTCTCCAATGG+AGG + chr5_4:68252789-68252808 Msa0866520:three_prime_UTR 35.0%
! TCTAATCTAAGGTGTGAGTT+TGG + chr5_4:68252889-68252908 Msa0866520:three_prime_UTR 35.0%
! CTAATCTAAGGTGTGAGTTT+GGG + chr5_4:68252890-68252909 Msa0866520:three_prime_UTR 35.0%
AGATGAGAGTGAACATCATT+TGG + chr5_4:68252955-68252974 Msa0866520:three_prime_UTR 35.0%
AGACAACAAGTTATGTCACT+AGG + chr5_4:68253127-68253146 Msa0866520:three_prime_UTR 35.0%
CAGATGAGATTTACGAGAAT+CGG - chr5_4:68253170-68253189 None:intergenic 35.0%
CTTGAACAGAAAAGACAAGG+TGG - chr5_4:68248654-68248673 None:intergenic 40.0%
! CACCTTGTCTTTTCTGTTCA+AGG + chr5_4:68248652-68248671 Msa0866520:CDS 40.0%
AGCCTTGAACAGAAAAGACA+AGG - chr5_4:68248657-68248676 None:intergenic 40.0%
CTATTCTCTTGATGCAGAAC+AGG - chr5_4:68248684-68248703 None:intergenic 40.0%
GTGAAAATTGCTTGGCTTCT+AGG + chr5_4:68248808-68248827 Msa0866520:CDS 40.0%
AAGGCTTCAACAGATAAGGA+GGG - chr5_4:68248980-68248999 None:intergenic 40.0%
CAAGAAGGCTTCAACAGATA+AGG - chr5_4:68248984-68249003 None:intergenic 40.0%
CTTATCTGTTGAAGCCTTCT+TGG + chr5_4:68248982-68249001 Msa0866520:CDS 40.0%
TTGAAGCCTTCTTGGTATGA+TGG + chr5_4:68248990-68249009 Msa0866520:CDS 40.0%
!! AAGTTTTATCCTCAGAGAGG+TGG + chr5_4:68249175-68249194 Msa0866520:CDS 40.0%
GGATGCAGAAAAAGATGAGA+AGG + chr5_4:68249244-68249263 Msa0866520:CDS 40.0%
TTCTGATGCTCCTATTATGC+AGG + chr5_4:68249307-68249326 Msa0866520:CDS 40.0%
AAGCTTGTGACGATGATGAT+CGG + chr5_4:68249387-68249406 Msa0866520:CDS 40.0%
CAAATCGAATGAGGATCTAG+AGG + chr5_4:68249463-68249482 Msa0866520:CDS 40.0%
GATGGAGCTTGAAGAAAGTT+TGG + chr5_4:68249601-68249620 Msa0866520:CDS 40.0%
!! TGCATTATCTGGTTCTTCTG+TGG - chr5_4:68249714-68249733 None:intergenic 40.0%
GAAGAACCAGATAATGCACA+AGG + chr5_4:68249716-68249735 Msa0866520:CDS 40.0%
! TGAATCGAGTGATGATGATG+AGG + chr5_4:68249939-68249958 Msa0866520:CDS 40.0%
!! ATGCATTGACTTGAGTTGGT+TGG - chr5_4:68250530-68250549 None:intergenic 40.0%
!! TGACATGCATTGACTTGAGT+TGG - chr5_4:68250534-68250553 None:intergenic 40.0%
GAGTGCTTCACAATTGGATA+TGG - chr5_4:68250684-68250703 None:intergenic 40.0%
!! CCGAGCATTTTGATGATTGA+TGG - chr5_4:68250856-68250875 None:intergenic 40.0%
!! ATCCGGTTTTAACAATCGAC+CGG + chr5_4:68251032-68251051 Msa0866520:CDS 40.0%
!! CTTTTAGGGATGCTTTTAGC+CGG - chr5_4:68251054-68251073 None:intergenic 40.0%
! AGCTCTTTGTTCGGCTTTTA+GGG - chr5_4:68251068-68251087 None:intergenic 40.0%
TTGGTTAGTAGCTATTGCTG+AGG - chr5_4:68251131-68251150 None:intergenic 40.0%
AGAGAAGCAAGAACTTGAGA+AGG + chr5_4:68251297-68251316 Msa0866520:CDS 40.0%
GCAAGAACTTGAGAAGGAAT+TGG + chr5_4:68251303-68251322 Msa0866520:CDS 40.0%
TCTTGTTCTTGTTGCAACAC+CGG + chr5_4:68251421-68251440 Msa0866520:CDS 40.0%
TGATACCGTTTCTAACTTGG+AGG + chr5_4:68251510-68251529 Msa0866520:CDS 40.0%
GTATGGATCCCATACAATGT+TGG - chr5_4:68251993-68252012 None:intergenic 40.0%
ATGGGATCCATACAAAATGG+TGG + chr5_4:68252000-68252019 Msa0866520:CDS 40.0%
! AAATGGTGGTGATGAAGGAA+AGG + chr5_4:68252014-68252033 Msa0866520:CDS 40.0%
TTCACCAAGCAAAGACTTGT+AGG + chr5_4:68252137-68252156 Msa0866520:CDS 40.0%
TATGCCTACAAGTCTTTGCT+TGG - chr5_4:68252144-68252163 None:intergenic 40.0%
AGCAAAGACTTGTAGGCATA+AGG + chr5_4:68252144-68252163 Msa0866520:exon 40.0%
ATTTATCACTCTCCTCCACT+TGG + chr5_4:68252288-68252307 Msa0866520:intron 40.0%
TTTATCACTCTCCTCCACTT+GGG + chr5_4:68252289-68252308 Msa0866520:intron 40.0%
!! GGATTTATGGTGTCATGTCA+TGG + chr5_4:68252818-68252837 Msa0866520:three_prime_UTR 40.0%
GCAGCTGAGATTTCAAACCT+TGG + chr5_4:68248741-68248760 Msa0866520:CDS 45.0%
GATGATTAGAGCAGTAGCCA+AGG - chr5_4:68248761-68248780 None:intergenic 45.0%
GAAGGCTTCAACAGATAAGG+AGG - chr5_4:68248981-68249000 None:intergenic 45.0%
AACTGAACTCGATCGATCCT+CGG - chr5_4:68249201-68249220 None:intergenic 45.0%
ATCGAATGAGGATCTAGAGG+AGG + chr5_4:68249466-68249485 Msa0866520:CDS 45.0%
TCGAATGAGGATCTAGAGGA+GGG + chr5_4:68249467-68249486 Msa0866520:CDS 45.0%
!! TCTTCTAAGACGCTTGACTG+CGG - chr5_4:68249536-68249555 None:intergenic 45.0%
GAACAAGAAAATGCTCCACC+AGG + chr5_4:68250063-68250082 Msa0866520:CDS 45.0%
! TTGGTTGGTTCTTCAGATGG+AGG - chr5_4:68250515-68250534 None:intergenic 45.0%
! GAGTTGGTTGGTTCTTCAGA+TGG - chr5_4:68250518-68250537 None:intergenic 45.0%
ATGCAATGCACTACATGCAG+AGG + chr5_4:68250927-68250946 Msa0866520:CDS 45.0%
ATCGCTGTATTCTACCTCAC+TGG - chr5_4:68251014-68251033 None:intergenic 45.0%
TGAGGTAGAATACAGCGATC+CGG + chr5_4:68251015-68251034 Msa0866520:CDS 45.0%
AGCCGGTCGATTGTTAAAAC+CGG - chr5_4:68251037-68251056 None:intergenic 45.0%
! GAGCTCTTTGTTCGGCTTTT+AGG - chr5_4:68251069-68251088 None:intergenic 45.0%
AAAGCCGAACAAAGAGCTCT+CGG + chr5_4:68251070-68251089 Msa0866520:CDS 45.0%
TACAAGGCTGCAGGAAGAAA+AGG + chr5_4:68251165-68251184 Msa0866520:CDS 45.0%
! AGGTTGATCGCGTTTATGAC+AGG + chr5_4:68251935-68251954 Msa0866520:CDS 45.0%
AATACTTCTCCAATGGAGGG+AGG + chr5_4:68252793-68252812 Msa0866520:three_prime_UTR 45.0%
! CCACACATGATTTTCTCTCG+AGG - chr5_4:68253008-68253027 None:intergenic 45.0%
CCTCGAGAGAAAATCATGTG+TGG + chr5_4:68253005-68253024 Msa0866520:three_prime_UTR 45.0%
!!! TTTTTTTTTTTTTTTTTTGT+TGG + chr5_4:68252202-68252221 Msa0866520:intron 5.0%
CGAATGAGGATCTAGAGGAG+GGG + chr5_4:68249468-68249487 Msa0866520:CDS 50.0%
GCAGTCAAGCGTCTTAGAAG+AGG + chr5_4:68249535-68249554 Msa0866520:CDS 50.0%
TGCACTGTCTTTGTACCTGG+TGG - chr5_4:68250081-68250100 None:intergenic 50.0%
CCATGCACTGTCTTTGTACC+TGG - chr5_4:68250084-68250103 None:intergenic 50.0%
CCAGGTACAAAGACAGTGCA+TGG + chr5_4:68250081-68250100 Msa0866520:intron 50.0%
TCTGCTGACCTAGGAGTTTC+AGG - chr5_4:68250908-68250927 None:intergenic 50.0%
TGCATTGCATCTGCTGACCT+AGG - chr5_4:68250917-68250936 None:intergenic 50.0%
ATCAGGAGCAGAAGAATCCG+TGG + chr5_4:68250976-68250995 Msa0866520:CDS 50.0%
! AGCACCGAGAGCTCTTTGTT+CGG - chr5_4:68251077-68251096 None:intergenic 50.0%
GGCAATGATTACAAGGCTGC+AGG + chr5_4:68251156-68251175 Msa0866520:CDS 50.0%
AAGGCTGCAGGAAGAAAAGG+CGG + chr5_4:68251168-68251187 Msa0866520:CDS 50.0%
AGAAAAGGCGGCAATGCAGA+TGG + chr5_4:68251180-68251199 Msa0866520:CDS 50.0%
TGACAGTTCATCGGTGTAGC+CGG - chr5_4:68251443-68251462 None:intergenic 50.0%
TAAATCCCTCCTCCCTCCAT+TGG - chr5_4:68252805-68252824 None:intergenic 50.0%
ATGGAGGGAGGAGGGATTTA+TGG + chr5_4:68252805-68252824 Msa0866520:three_prime_UTR 50.0%
TGAGGATCTAGAGGAGGGGA+AGG + chr5_4:68249472-68249491 Msa0866520:CDS 55.0%
ACGCTTGACTGCGGTTCAAC+TGG - chr5_4:68249527-68249546 None:intergenic 55.0%
GGAGCAGAAGAATCCGTGGA+TGG + chr5_4:68250980-68250999 Msa0866520:CDS 55.0%
ACTGGCAACGCTACCATCCA+CGG - chr5_4:68250996-68251015 None:intergenic 55.0%
! GATTGACCTGGTGGCTAGTC+GGG - chr5_4:68252373-68252392 None:intergenic 55.0%
CGATTGACCTGGTGGCTAGT+CGG - chr5_4:68252374-68252393 None:intergenic 55.0%
! CGACTAGCCACCAGGTCAAT+CGG + chr5_4:68252372-68252391 Msa0866520:intron 55.0%
! GACTAGCCACCAGGTCAATC+GGG + chr5_4:68252373-68252392 Msa0866520:intron 55.0%
TTGTTCCGACCCGATTGACC+TGG - chr5_4:68252385-68252404 None:intergenic 55.0%
AGGTCAATCGGGTCGGAACA+AGG + chr5_4:68252384-68252403 Msa0866520:intron 55.0%
ACTTCTCCAATGGAGGGAGG+AGG + chr5_4:68252796-68252815 Msa0866520:three_prime_UTR 55.0%
CTTCTCCAATGGAGGGAGGA+GGG + chr5_4:68252797-68252816 Msa0866520:three_prime_UTR 55.0%
TATCCTCAGAGAGGTGGCCG+AGG + chr5_4:68249181-68249200 Msa0866520:CDS 60.0%
! GGATGGTAGCGTTGCCAGTG+AGG + chr5_4:68250997-68251016 Msa0866520:CDS 60.0%
AGCCACCAGGTCAATCGGGT+CGG + chr5_4:68252377-68252396 Msa0866520:intron 60.0%
TTCCGACCCGATTGACCTGG+TGG - chr5_4:68252382-68252401 None:intergenic 60.0%
GATCCTCGGCCACCTCTCTG+AGG - chr5_4:68249187-68249206 None:intergenic 65.0%
! GCTCGGCCCGACTAGCCACC+AGG + chr5_4:68252364-68252383 Msa0866520:intron 75.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 68248428 68253196 68248428 ID=Msa0866520;Name=Msa0866520
chr5_4 mRNA 68248428 68253196 68248428 ID=Msa0866520-mRNA-1;Parent=Msa0866520;Name=Msa0866520-mRNA-1;_AED=0.02;_eAED=0.02;_QI=61|1|1|1|0.75|0.6|5|723|991
chr5_4 exon 68248428 68249737 68248428 ID=Msa0866520-mRNA-1:exon:21578;Parent=Msa0866520-mRNA-1
chr5_4 exon 68249878 68250084 68249878 ID=Msa0866520-mRNA-1:exon:21579;Parent=Msa0866520-mRNA-1
chr5_4 exon 68250504 68250638 68250504 ID=Msa0866520-mRNA-1:exon:21580;Parent=Msa0866520-mRNA-1
chr5_4 exon 68250774 68252192 68250774 ID=Msa0866520-mRNA-1:exon:21581;Parent=Msa0866520-mRNA-1
chr5_4 exon 68252508 68253196 68252508 ID=Msa0866520-mRNA-1:exon:21582;Parent=Msa0866520-mRNA-1
chr5_4 five_prime_UTR 68248428 68248488 68248428 ID=Msa0866520-mRNA-1:five_prime_utr;Parent=Msa0866520-mRNA-1
chr5_4 CDS 68248489 68249737 68248489 ID=Msa0866520-mRNA-1:cds;Parent=Msa0866520-mRNA-1
chr5_4 CDS 68249878 68250084 68249878 ID=Msa0866520-mRNA-1:cds;Parent=Msa0866520-mRNA-1
chr5_4 CDS 68250504 68250638 68250504 ID=Msa0866520-mRNA-1:cds;Parent=Msa0866520-mRNA-1
chr5_4 CDS 68250774 68252158 68250774 ID=Msa0866520-mRNA-1:cds;Parent=Msa0866520-mRNA-1
chr5_4 three_prime_UTR 68252159 68252192 68252159 ID=Msa0866520-mRNA-1:three_prime_utr;Parent=Msa0866520-mRNA-1
chr5_4 three_prime_UTR 68252508 68253196 68252508 ID=Msa0866520-mRNA-1:three_prime_utr;Parent=Msa0866520-mRNA-1
Gene Sequence

>Msa0866520

ATGGCTGCAAACAAGTTTGCAACCATGTTACATAGAAACACCAACAAAATAGTTGTAATTCTAGTGTATGCATTTCTTGAATGGATTTTAATTATCTTTCTTCTTCTCAACTCTTTGTTCAGTTATCTTATCACAAAATTTGCCAAATGTTTTGGTCTTAAACCACCTTGTCTTTTCTGTTCAAGGCTTGATCCTGTTCTGCATCAAGAGAATAGTAAGTTTTTTCAAAGTGATCTTGTGTGTGAAACTCATGCAGCTGAGATTTCAAACCTTGGCTACTGCTCTAATCATCAAAGATTAGCAGAAACACATAGCATGTGTGAAAATTGCTTGGCTTCTAGGCCAAATCATCATGAAACTGAAAACTCATTTGGTATGAGACATAGGATTGGTTTTGTTTCATGGTTAGGCCATGAAAAACATGATGAAAATGGAGAGAATTTAAATAGGTGCTCTTGCTGCAATGAGAGCTTGAATAACCAAATTTACCCTCCTTATCTGTTGAAGCCTTCTTGGTATGATGGAAACTATTTAAGCAAAGGATCACTCATTGTTGAATCAATAGAAGATGACAAAGAAGGTGAAAAATACATTGAATTTGAGATAAACAATGGAGAAGATCATGATCATGATCATGATCATGATGAAGAGGTACTAAATGAGCATCAGATATTTTCTGATATTGAAAGTTTTATCCTCAGAGAGGTGGCCGAGGATCGATCGAGTTCAGTTTCAAACTTGAACTCTGATGAAAAGGATGCAGAAAAAGATGAGAAGGAAGATTATCCAAGTGCTGTTGATGATTTTATTCGTCTATTTTCTGATGCTCCTATTATGCAGGTTTCACATTGTGAAGATAGAACACTTGAAATCATCAATATGCACTTTGAGAACTACAAAGCTTGTGACGATGATGATCGGTTAATACCTGTTAAGTTAATAGATTCTATCACTTGTTTAAATTTTGAATCATGCAAATCGAATGAGGATCTAGAGGAGGGGAAGGAGAAGATTCAAACTTTTGTCGGTGAGTCACCAGTTGAACCGCAGTCAAGCGTCTTAGAAGAGGAAGTATTGATCAAAATGGATGAGAATGTAGAGAAAACAAACATGATGGAGCTTGAAGAAAGTTTGGAAAATTCTATATCTTTAGAAGTTGAAGGGTTAAATCAGAATTCAGTAGTTCAAATTTCTGTGAATGGTGATAATAGTACTGAAGAAGCCACAGAAGAACCAGATAATGCACAAGTTGATCTTTTTCAATCTCAAGAATCGATCTGCTCGTATGAGTGCACACAAGAAGATGAATCTGAATCGAGTGATGATGATGAGGCTGAAGCTCAAAATGCCTTTGAAAAATTCATTTCTCAGAATAAGCTAAGTATGTCTCACAGTTTATCCGACAATGACAGAAATTTGGAAGCAGATATGGAAGAACAAGAAAATGCTCCACCAGATAATCTGCCTCCATCTGAAGAACCAACCAACTCAAGTCAATGCATGTCAGAAGATCAATCTTCTTCAAGTGATAGTGAGGATGATACTGAAGTTCATAATGCATTTGATGAATTCATTGCACAAAATAATCTCCATACCGATAAAACCAGTGTAAATGATAATGAAATGGCCGAGAAAACAATATCAGCTGAAAAAATTGAGGAGGAAACAATCCATCAATCATCAAAATGCTCGGAATCGGTTGAACTAGAAGAAGATAAACTTCCTGAAACTCCTAGGTCAGCAGATGCAATGCACTACATGCAGAGGAAATCGATACTCTTTGAGAAAACAGAATCAGGAGCAGAAGAATCCGTGGATGGTAGCGTTGCCAGTGAGGTAGAATACAGCGATCCGGTTTTAACAATCGACCGGCTAAAAGCATCCCTAAAAGCCGAACAAAGAGCTCTCGGTGCTATATATCAAGAACTAGAAGAAGAGAGAAGTGCCTCAGCAATAGCTACTAACCAAACAATGGCAATGATTACAAGGCTGCAGGAAGAAAAGGCGGCAATGCAGATGGAAGCATTACAATACCAAAGAATGATGGAAGAACAAGCTGAATATGATCAAGAAGCTTTACAGCTTTTGAACGATTTAATGACAAAAAGAGAGAAAGAGAAGCAAGAACTTGAGAAGGAATTGGAAGAGTATAGGGAAAAAGTTATGGATTATGAAGCAAAAGAGAAATTAAGAATGTTGAGAAGAATGAAAGATGGAAGTGTAAGAAGTAGAGACTCTTCTTGTTCTTGTTGCAACACCGGCTACACCGATGAACTGTCAGTTGATCTTAACAATGAAGAAAAAGAACAGTATAACAATGCCAATGATGATACCGTTTCTAACTTGGAGGAGATAGCATTAGATTGTGTAAAACATGTAAGTGAACTTGATAGTACTTTAGAAGAATTTGAGGAAGAGAAAGCTTCTATTCTAGATCAACTCAAAGCATTAGAGGAAAAGATAATTTCATTGGAAGATGGTGAAGAATTTCTTGATGAGAGTTCATCAAGATATGGTGATCACAAAGAAGACTATTCTAATGGATTTTCAGATGATAAGCAATCTCCAAGAAGAACAATTGGTTGCTTGGCAAAGAAGTTACTTCCATATTTAGATGAAGCAGAGAATGAGAATGATGAAGAAGCATTTGCATTTGATAGAGAATTGGAGAAAGAATCAAATGATATGCAAATGCAAAACTCAGTTCCTATGATAAGTGAAATGGATAGCATGAAAGTGTGTATTGAAGAAGAGGTTGATCGCGTTTATGACAGGTTACAAGCTCTTGAAACAGATAGAGAATTTCTCCAACATTGTATGGGATCCATACAAAATGGTGGTGATGAAGGAAAGGATTTGCTTCAAGAAATCTTGCAACATCTTCGCGATCTTAAGAATGTTGAATTACGCCTTAAGAACTTGGACAATGATCCATCCACTATAGTTAAGTTGCATTCACCAAGCAAAGACTTGTAG

Protein sequence

>Msa0866520

MAANKFATMLHRNTNKIVVILVYAFLEWILIIFLLLNSLFSYLITKFAKCFGLKPPCLFCSRLDPVLHQENSKFFQSDLVCETHAAEISNLGYCSNHQRLAETHSMCENCLASRPNHHETENSFGMRHRIGFVSWLGHEKHDENGENLNRCSCCNESLNNQIYPPYLLKPSWYDGNYLSKGSLIVESIEDDKEGEKYIEFEINNGEDHDHDHDHDEEVLNEHQIFSDIESFILREVAEDRSSSVSNLNSDEKDAEKDEKEDYPSAVDDFIRLFSDAPIMQVSHCEDRTLEIINMHFENYKACDDDDRLIPVKLIDSITCLNFESCKSNEDLEEGKEKIQTFVGESPVEPQSSVLEEEVLIKMDENVEKTNMMELEESLENSISLEVEGLNQNSVVQISVNGDNSTEEATEEPDNAQVDLFQSQESICSYECTQEDESESSDDDEAEAQNAFEKFISQNKLSMSHSLSDNDRNLEADMEEQENAPPDNLPPSEEPTNSSQCMSEDQSSSSDSEDDTEVHNAFDEFIAQNNLHTDKTSVNDNEMAEKTISAEKIEEETIHQSSKCSESVELEEDKLPETPRSADAMHYMQRKSILFEKTESGAEESVDGSVASEVEYSDPVLTIDRLKASLKAEQRALGAIYQELEEERSASAIATNQTMAMITRLQEEKAAMQMEALQYQRMMEEQAEYDQEALQLLNDLMTKREKEKQELEKELEEYREKVMDYEAKEKLRMLRRMKDGSVRSRDSSCSCCNTGYTDELSVDLNNEEKEQYNNANDDTVSNLEEIALDCVKHVSELDSTLEEFEEEKASILDQLKALEEKIISLEDGEEFLDESSSRYGDHKEDYSNGFSDDKQSPRRTIGCLAKKLLPYLDEAENENDEEAFAFDRELEKESNDMQMQNSVPMISEMDSMKVCIEEEVDRVYDRLQALETDREFLQHCMGSIQNGGDEGKDLLQEILQHLRDLKNVELRLKNLDNDPSTIVKLHSPSKDL*