AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0634130

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0634130 MtrunA17_Chr4g0012671 92.208 231 18 0 1 231 1 231 2.44e-160 442
Msa0634130 MtrunA17_Chr2g0312491 93.182 220 14 1 1 220 1 219 5.10e-152 421
Msa0634130 MtrunA17_Chr2g0312501 92.771 83 6 0 1 83 1 83 4.19e-51 160
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0634130 AT1G12244.1 62.621 206 74 3 24 226 38 243 9.52e-77 232

Find 69 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTACAAAACTTCAAATTA+AGG 0.212601 4_3:-20741621 Msa0634130:three_prime_UTR
TCCTTGTAGTTCAAGATTCT+TGG 0.213325 4_3:+20741832 None:intergenic
GAAGCTGATGAGTTTATAAT+TGG 0.233134 4_3:-20744072 Msa0634130:CDS
CTTCTGCGATGTTCATTATC+TGG 0.245869 4_3:+20744197 None:intergenic
TTCTTCCTCCGAAGCGCGTT+TGG 0.249873 4_3:+20746589 None:intergenic
TCTTATGTTGACAGAATTAA+TGG 0.263321 4_3:-20741289 Msa0634130:three_prime_UTR
AGGCATCTTGTTTCTTCTGC+TGG 0.280011 4_3:+20742243 None:intergenic
CATGTTGACCATTCGATCTA+TGG 0.320229 4_3:+20742865 None:intergenic
GTATATCTACACGATGAATA+TGG 0.323530 4_3:-20742902 Msa0634130:CDS
GGTTAAATGCCGAAATTGTT+AGG 0.333058 4_3:-20741505 Msa0634130:three_prime_UTR
TGTTAATCAACACAATGATT+TGG 0.342439 4_3:-20741658 Msa0634130:three_prime_UTR
ACACAATGATTTGGTGTGTT+TGG 0.346971 4_3:-20741649 Msa0634130:three_prime_UTR
TGTCAACATAAGATCCTTGC+AGG 0.349163 4_3:+20741299 None:intergenic
CCTTGTAGTTCAAGATTCTT+GGG 0.350745 4_3:+20741833 None:intergenic
TACTATTACATCAAAATAAA+CGG 0.354934 4_3:+20741565 None:intergenic
GTTTGGAAGTTGCGAGAAAA+TGG 0.366349 4_3:-20741696 Msa0634130:three_prime_UTR
TCTAATTTCAAGTATGCGTT+TGG 0.385558 4_3:-20741713 Msa0634130:three_prime_UTR
GGCATCTTGTTTCTTCTGCT+GGG 0.389860 4_3:+20742244 None:intergenic
TTGTGTGTGTGAGTTTATAA+TGG 0.392127 4_3:-20741462 Msa0634130:three_prime_UTR
AACTTCCTCCAAACGCGCTT+CGG 0.404160 4_3:-20746597 Msa0634130:CDS
GAAGATTAATCACTTAATAA+AGG 0.409357 4_3:-20741764 Msa0634130:exon
TGGAGAGGAGGCTTCTCTCT+TGG 0.418177 4_3:-20746556 Msa0634130:CDS
GAGAGATATTTCTCCACATC+AGG 0.432417 4_3:-20741878 Msa0634130:CDS
CAAGTGGAGGTACCGGGGTC+CGG 0.448894 4_3:+20741482 None:intergenic
GGGGTCCGGCCTAACAATTT+CGG 0.459732 4_3:+20741496 None:intergenic
AAATTAGAAAACACGAATGA+TGG 0.464328 4_3:+20741728 None:intergenic
TCCTTTCCATCACAAGACTT+TGG 0.469405 4_3:+20744045 None:intergenic
TTCTCTCTTGGTGTCGACTT+AGG 0.479297 4_3:-20746544 Msa0634130:CDS
AAGAGTTTCAAGGGTGGCAC+TGG 0.486520 4_3:+20746712 None:intergenic
TCTAGAAGTCCTAGCTCAAC+TGG 0.487412 4_3:-20741526 Msa0634130:three_prime_UTR
TATATCTACACGATGAATAT+GGG 0.495994 4_3:-20742901 Msa0634130:CDS
GACTTAGGAATGGCTCGTAC+TGG 0.498656 4_3:-20746529 Msa0634130:CDS
TTCCTCCGAAGCGCGTTTGG+AGG 0.506216 4_3:+20746592 None:intergenic
CACACACAAGTGGAGGTACC+GGG 0.510025 4_3:+20741476 None:intergenic
ACACACACAAGTGGAGGTAC+CGG 0.513738 4_3:+20741475 None:intergenic
AAATGCCGAAATTGTTAGGC+CGG 0.521609 4_3:-20741501 Msa0634130:three_prime_UTR
GGAGGAAGAAAGATGCAGAT+TGG 0.522484 4_3:-20746576 Msa0634130:CDS
ATCAATTTCTCTCTCTAATG+TGG 0.524500 4_3:-20746756 Msa0634130:exon
AAATGAGTGCAAGAGTTTCA+AGG 0.524810 4_3:+20746702 None:intergenic
TCCAAAGTCTTGTGATGGAA+AGG 0.526441 4_3:-20744046 Msa0634130:CDS
AACTTCAAATTAAGGATGTG+TGG 0.527731 4_3:-20741613 Msa0634130:three_prime_UTR
GGCATTTAACCAGTTGAGCT+AGG 0.535749 4_3:+20741517 None:intergenic
GGACTTCCAAAGTCTTGTGA+TGG 0.537166 4_3:-20744051 Msa0634130:CDS
CCCAAGAATCTTGAACTACA+AGG 0.541911 4_3:-20741833 Msa0634130:CDS
ACTTCAAATTAAGGATGTGT+GGG 0.550996 4_3:-20741612 Msa0634130:three_prime_UTR
TACACTTACCATGGCAGCAT+AGG 0.559395 4_3:+20742223 None:intergenic
AATGAACATCGCAGAAGAAG+AGG 0.564672 4_3:-20744191 Msa0634130:intron
TTCCTCCAAACGCGCTTCGG+AGG 0.565039 4_3:-20746594 Msa0634130:CDS
AATGAGTGCAAGAGTTTCAA+GGG 0.565598 4_3:+20746703 None:intergenic
TCTTGGTGTCGACTTAGGAA+TGG 0.573218 4_3:-20746539 Msa0634130:CDS
AAAGATGCAGATTGGAGAGG+AGG 0.576532 4_3:-20746568 Msa0634130:CDS
ACTGGCATTGCTCTCAGCAA+AGG 0.577358 4_3:-20746511 Msa0634130:CDS
ACAAGATGCCTATGCTGCCA+TGG 0.581302 4_3:-20742231 Msa0634130:intron
AAATGCCGCCATAGATCGAA+TGG 0.589365 4_3:-20742873 Msa0634130:CDS
ACTCTTTCAGGGGCTTGAGT+AGG 0.589416 4_3:-20742268 Msa0634130:intron
AGGATTGTGTTCATTGACAC+TGG 0.604127 4_3:+20741319 None:intergenic
AAGAAAGATGCAGATTGGAG+AGG 0.610227 4_3:-20746571 Msa0634130:CDS
CTACAAGGAAAACTTAGAAG+TGG 0.611235 4_3:-20741818 Msa0634130:CDS
TATAAACTCACACACACAAG+TGG 0.621836 4_3:+20741466 None:intergenic
GAAATTGTTAGGCCGGACCC+CGG 0.622094 4_3:-20741494 Msa0634130:three_prime_UTR
CAAGCCTTCCAGTAAAAGAA+CGG 0.633283 4_3:+20744001 None:intergenic
AAACTCACACACACAAGTGG+AGG 0.652693 4_3:+20741469 None:intergenic
AAATAATCATCATCTTTGAG+AGG 0.655033 4_3:+20741794 None:intergenic
TCAATGAACACAATCCTGCA+AGG 0.662441 4_3:-20741313 Msa0634130:three_prime_UTR
TTGCTAATCGAGCTGCTGAG+AGG 0.671815 4_3:-20743981 Msa0634130:intron
GTTGACCATTCGATCTATGG+CGG 0.691744 4_3:+20742868 None:intergenic
ACACACAAGTGGAGGTACCG+GGG 0.699262 4_3:+20741477 None:intergenic
ACTGCGAGGACAGAAACTTG+AGG 0.702953 4_3:-20744221 Msa0634130:CDS
GAGTGCAAGAGTTTCAAGGG+TGG 0.721147 4_3:+20746706 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAAAAAAAGAATGTTTT+TGG - chr4_3:20746037-20746056 Msa0634130:intron 10.0%
!!! TAAAAAAAAAGAATGTTTTT+GGG - chr4_3:20746038-20746057 Msa0634130:intron 10.0%
!!! TTGAAAATTTTAATCAGTTA+GGG - chr4_3:20742037-20742056 Msa0634130:intron 15.0%
!!! GTTTTACAAATTGATAATAA+AGG + chr4_3:20743436-20743455 None:intergenic 15.0%
!!! TTCTATTCATTTTCTTATTT+TGG + chr4_3:20744140-20744159 None:intergenic 15.0%
!! AATAAGAAAATGAATAGAAA+AGG - chr4_3:20744141-20744160 Msa0634130:intron 15.0%
!! ATAAGAAAATGAATAGAAAA+GGG - chr4_3:20744142-20744161 Msa0634130:intron 15.0%
!! TACAACAAAAGATAAAATAA+AGG - chr4_3:20744398-20744417 Msa0634130:intron 15.0%
!! CATTATTCTTAATTCTTATA+AGG - chr4_3:20744570-20744589 Msa0634130:intron 15.0%
!!! TATATAGTTTAAAACCATTT+TGG - chr4_3:20745516-20745535 Msa0634130:intron 15.0%
!!! AAACAATTTTATATCCAAAA+TGG + chr4_3:20745533-20745552 None:intergenic 15.0%
!! TACTATTACATCAAAATAAA+CGG + chr4_3:20746476-20746495 None:intergenic 15.0%
!!! TTTTGATGTAATAGTAAAAA+TGG - chr4_3:20746480-20746499 Msa0634130:intron 15.0%
!! ATAGTAAATAAGTATGTGTA+AGG - chr4_3:20741841-20741860 Msa0634130:CDS 20.0%
!!! GTTGAAAATTTTAATCAGTT+AGG - chr4_3:20742036-20742055 Msa0634130:intron 20.0%
!! TAAATTCAATTCTTTCAAAG+AGG - chr4_3:20742192-20742211 Msa0634130:intron 20.0%
!!! ACACATAAATTTTATCCAAT+AGG + chr4_3:20742264-20742283 None:intergenic 20.0%
!! TTATAAGGTAAAATCTACTT+AGG + chr4_3:20742328-20742347 None:intergenic 20.0%
!! AAATGATGTTACAAAGTAAA+CGG + chr4_3:20742708-20742727 None:intergenic 20.0%
!!! TTTCAATTTTTACATGTAGA+TGG - chr4_3:20742726-20742745 Msa0634130:intron 20.0%
!!! TTAACATTTTGCAGTATTTT+CGG - chr4_3:20742851-20742870 Msa0634130:intron 20.0%
!! TGATAAAATAACATTAGTGA+AGG + chr4_3:20742925-20742944 None:intergenic 20.0%
!!! CACTAATGTTATTTTATCAA+TGG - chr4_3:20742926-20742945 Msa0634130:intron 20.0%
!! TTATCAATGGAAATAAAAAC+AGG - chr4_3:20742939-20742958 Msa0634130:intron 20.0%
!! ATTTAGACATATGTTTGAAT+TGG + chr4_3:20743044-20743063 None:intergenic 20.0%
!!! GTCAAAAGAGTATATAAAAT+AGG - chr4_3:20743098-20743117 Msa0634130:intron 20.0%
!! AAAGTAAATACACGATTATA+AGG + chr4_3:20743787-20743806 None:intergenic 20.0%
!! TATAATCGTGTATTTACTTT+AGG - chr4_3:20743787-20743806 Msa0634130:intron 20.0%
!!! TTTTTATGTTTGCGAATTAT+TGG + chr4_3:20744296-20744315 None:intergenic 20.0%
!! AAGAATTAAGAATAATGACT+TGG + chr4_3:20744567-20744586 None:intergenic 20.0%
!! TCATTATAGATATTGAAGAA+TGG + chr4_3:20744629-20744648 None:intergenic 20.0%
!! CTATTATCTTTATACTCTAA+TGG - chr4_3:20744740-20744759 Msa0634130:intron 20.0%
!!! AAAACTGGTTCTTATTTATA+AGG - chr4_3:20744908-20744927 Msa0634130:intron 20.0%
!! TTCTTCATAAGCATTTATTA+TGG + chr4_3:20745419-20745438 None:intergenic 20.0%
!!! CTTAATTTGAAGTTTTGTAA+TGG + chr4_3:20746419-20746438 None:intergenic 20.0%
!! CATTACAAAACTTCAAATTA+AGG - chr4_3:20746417-20746436 Msa0634130:intron 20.0%
!! TGAATTTTTGCATGATTTGA+AGG + chr4_3:20741365-20741384 None:intergenic 25.0%
!!! TAATGCTGTTTTTAGATTGT+TGG + chr4_3:20741411-20741430 None:intergenic 25.0%
! TCTAAAAACAGCATTAACTT+TGG - chr4_3:20741415-20741434 Msa0634130:three_prime_UTR 25.0%
!!! AAAAGTGTTTTACCGTTAAA+GGG + chr4_3:20741565-20741584 None:intergenic 25.0%
!!! AAAAAGTGTTTTACCGTTAA+AGG + chr4_3:20741566-20741585 None:intergenic 25.0%
!!! GTTTGTTTTGTTGTTGTTTT+TGG - chr4_3:20741587-20741606 Msa0634130:three_prime_UTR 25.0%
!! TTTTTGGATATTCGTCATTT+TGG - chr4_3:20741603-20741622 Msa0634130:three_prime_UTR 25.0%
!! TGCATTAACTCTTTTCATAT+AGG - chr4_3:20741808-20741827 Msa0634130:CDS 25.0%
!! GCATTAACTCTTTTCATATA+GGG - chr4_3:20741809-20741828 Msa0634130:CDS 25.0%
! ACTGAAACTAAAAAACAACA+GGG + chr4_3:20742018-20742037 None:intergenic 25.0%
! AACTGAAACTAAAAAACAAC+AGG + chr4_3:20742019-20742038 None:intergenic 25.0%
! AGCATTTCACTTTATCAAAT+TGG - chr4_3:20742375-20742394 Msa0634130:intron 25.0%
! ATAAGATGAATAGAGTAGAA+TGG - chr4_3:20742660-20742679 Msa0634130:intron 25.0%
! AATGATGTTACAAAGTAAAC+GGG + chr4_3:20742707-20742726 None:intergenic 25.0%
!! AATTTTTACATGTAGATGGT+TGG - chr4_3:20742730-20742749 Msa0634130:intron 25.0%
! ACTGCAAAATGTTAAAACAT+TGG + chr4_3:20742846-20742865 None:intergenic 25.0%
!! TAACATTTTGCAGTATTTTC+GGG - chr4_3:20742852-20742871 Msa0634130:intron 25.0%
! ACATATGTTTGAATTGGTAA+TGG + chr4_3:20743038-20743057 None:intergenic 25.0%
! ACATATGTCTAAATGTGATT+TGG - chr4_3:20743050-20743069 Msa0634130:intron 25.0%
!! TGTATTGCAATTTTACCTTT+TGG + chr4_3:20743162-20743181 None:intergenic 25.0%
!! AATCTGAAGTAAATTGGATT+CGG + chr4_3:20743472-20743491 None:intergenic 25.0%
! CCTATAATTCAAAATCATCT+TGG + chr4_3:20743947-20743966 None:intergenic 25.0%
!! CCAAGATGATTTTGAATTAT+AGG - chr4_3:20743944-20743963 Msa0634130:intron 25.0%
!! AGTCCTTTAAGAATTCAAAA+TGG - chr4_3:20744766-20744785 Msa0634130:intron 25.0%
!! GAACCATTTTGAATTCTTAA+AGG + chr4_3:20744772-20744791 None:intergenic 25.0%
! TAGATCATTATTTCAGTATG+TGG + chr4_3:20744806-20744825 None:intergenic 25.0%
!! ACAAACTTGATTTTTCCTTT+CGG + chr4_3:20744973-20744992 None:intergenic 25.0%
! TCTGATGCTTATTTAGTATT+TGG - chr4_3:20744995-20745014 Msa0634130:intron 25.0%
! TATATCTACACGATGAATAT+GGG - chr4_3:20745137-20745156 Msa0634130:intron 25.0%
! AAGTACTAAAGTAAATGAGT+AGG - chr4_3:20745371-20745390 Msa0634130:intron 25.0%
! AGTACTAAAGTAAATGAGTA+GGG - chr4_3:20745372-20745391 Msa0634130:intron 25.0%
!! ATTTCAAGCAACATTTTGTA+TGG - chr4_3:20745711-20745730 Msa0634130:intron 25.0%
! TGGAATTTATTACTTTACTG+TGG - chr4_3:20745731-20745750 Msa0634130:intron 25.0%
! TTTGACAAAAATAATGACGA+AGG - chr4_3:20745872-20745891 Msa0634130:intron 25.0%
! TTGACAAAAATAATGACGAA+GGG - chr4_3:20745873-20745892 Msa0634130:intron 25.0%
!! TGTTAATGACCATTTTACAA+TGG - chr4_3:20745920-20745939 Msa0634130:intron 25.0%
!! TAATTGTCTTCTCTTTTCAT+TGG + chr4_3:20746098-20746117 None:intergenic 25.0%
! ATGAAAAGAGAAGACAATTA+TGG - chr4_3:20746098-20746117 Msa0634130:intron 25.0%
! AAATAATCATCATCTTTGAG+AGG + chr4_3:20746247-20746266 None:intergenic 25.0%
! AAATTAGAAAACACGAATGA+TGG + chr4_3:20746313-20746332 None:intergenic 25.0%
! TGTTAATCAACACAATGATT+TGG - chr4_3:20746380-20746399 Msa0634130:intron 25.0%
! GATGTAATAGTAAAAATGGT+AGG - chr4_3:20746484-20746503 Msa0634130:intron 25.0%
!!! CCATTTTTTTTCTTTTTGGT+TGG + chr4_3:20746619-20746638 None:intergenic 25.0%
! CCAACCAAAAAGAAAAAAAA+TGG - chr4_3:20746616-20746635 Msa0634130:CDS 25.0%
!!! CCTACCATTTTTTTTCTTTT+TGG + chr4_3:20746623-20746642 None:intergenic 25.0%
! CCAAAAAGAAAAAAAATGGT+AGG - chr4_3:20746620-20746639 Msa0634130:CDS 25.0%
! TCTTATGTTGACAGAATTAA+TGG - chr4_3:20746749-20746768 Msa0634130:exon 25.0%
ATCAATTTCTCTCTCTAATG+TGG - chr4_3:20741282-20741301 Msa0634130:three_prime_UTR 30.0%
! ATTTTTGCATGATTTGAAGG+TGG + chr4_3:20741362-20741381 None:intergenic 30.0%
TCAGAGATTTCAATACATTG+AGG - chr4_3:20741944-20741963 Msa0634130:intron 30.0%
CAGAGATTTCAATACATTGA+GGG - chr4_3:20741945-20741964 Msa0634130:intron 30.0%
AGAGATTTCAATACATTGAG+GGG - chr4_3:20741946-20741965 Msa0634130:intron 30.0%
!!! TGTGATTTGGTACTATGTTT+TGG - chr4_3:20742061-20742080 Msa0634130:intron 30.0%
! GTTTGTCCATTTTGTAAACA+CGG - chr4_3:20742087-20742106 Msa0634130:intron 30.0%
TTACAACCGTGTTTACAAAA+TGG + chr4_3:20742096-20742115 None:intergenic 30.0%
TAAACACGGTTGTAAAATGT+TGG - chr4_3:20742101-20742120 Msa0634130:intron 30.0%
AAACACGGTTGTAAAATGTT+GGG - chr4_3:20742102-20742121 Msa0634130:intron 30.0%
! GATTTTACCTTATAAGAGAG+TGG - chr4_3:20742333-20742352 Msa0634130:intron 30.0%
TCTAATTCCACTCTCTTATA+AGG + chr4_3:20742343-20742362 None:intergenic 30.0%
TGTATGTTCCCTAGTTAAAA+TGG + chr4_3:20742507-20742526 None:intergenic 30.0%
AACCAGTAATAATCTGATAC+AGG + chr4_3:20742569-20742588 None:intergenic 30.0%
TAGATGGTTGGAATTACATT+TGG - chr4_3:20742742-20742761 Msa0634130:intron 30.0%
TAATTGTGATAGAGAGAAGA+TGG - chr4_3:20742782-20742801 Msa0634130:intron 30.0%
AGAAGATGGAAGCTAATTAA+AGG - chr4_3:20742796-20742815 Msa0634130:intron 30.0%
! TAACATTAGTGAAGGCATAA+CGG + chr4_3:20742917-20742936 None:intergenic 30.0%
CAGGAAACACTAAAAGTAAA+CGG - chr4_3:20742958-20742977 Msa0634130:intron 30.0%
AGGAAACACTAAAAGTAAAC+GGG - chr4_3:20742959-20742978 Msa0634130:intron 30.0%
!!! ACACCTGTTTTTGAAAATCT+AGG + chr4_3:20742986-20743005 None:intergenic 30.0%
! TGCAATTTTACCTTTTGGAT+TGG + chr4_3:20743157-20743176 None:intergenic 30.0%
! ACCAAATTGTAACAGTTTTC+TGG + chr4_3:20743205-20743224 None:intergenic 30.0%
TAGTTTCGCAAAAAGATTTG+AGG - chr4_3:20743319-20743338 Msa0634130:intron 30.0%
!! TCAAGCTTTGAATTGGAAAT+CGG + chr4_3:20743388-20743407 None:intergenic 30.0%
!! AATGTGTTCAAGCTTTGAAT+TGG + chr4_3:20743395-20743414 None:intergenic 30.0%
TCCAATTTACTTCAGATTTG+AGG - chr4_3:20743474-20743493 Msa0634130:intron 30.0%
! TCCTCAAATCTGAAGTAAAT+TGG + chr4_3:20743478-20743497 None:intergenic 30.0%
AGATTTGAGGAAATCAATGT+TGG - chr4_3:20743487-20743506 Msa0634130:intron 30.0%
ACATAGAACCTAATATGCAA+GGG + chr4_3:20743577-20743596 None:intergenic 30.0%
AACATAGAACCTAATATGCA+AGG + chr4_3:20743578-20743597 None:intergenic 30.0%
ATATTAGGTTCTATGTTCCT+GGG - chr4_3:20743581-20743600 Msa0634130:intron 30.0%
TGGTATGTAAGTTTAGTCAA+TGG - chr4_3:20743676-20743695 Msa0634130:intron 30.0%
! GTAAGTTTAGTCAATGGATT+TGG - chr4_3:20743682-20743701 Msa0634130:intron 30.0%
CATACTAAACAACAAAGACA+CGG + chr4_3:20743712-20743731 None:intergenic 30.0%
TACACGATTATAAGGATCAA+TGG + chr4_3:20743779-20743798 None:intergenic 30.0%
AATCATCTTGGTTATCTCTA+AGG + chr4_3:20743935-20743954 None:intergenic 30.0%
GAAGCTGATGAGTTTATAAT+TGG - chr4_3:20743966-20743985 Msa0634130:intron 30.0%
TTGTCAACACTACATTACAA+TGG + chr4_3:20744087-20744106 None:intergenic 30.0%
ATGAATAGAAAAGGGATGAA+TGG - chr4_3:20744150-20744169 Msa0634130:intron 30.0%
! GAATTATTGGAGGTATATCT+CGG + chr4_3:20744283-20744302 None:intergenic 30.0%
TTATGTTTGCGAATTATTGG+AGG + chr4_3:20744293-20744312 None:intergenic 30.0%
ATAGATATTGAAGAATGGCA+AGG + chr4_3:20744624-20744643 None:intergenic 30.0%
TAGAGTTCTTAAAGCAAATG+CGG + chr4_3:20744723-20744742 None:intergenic 30.0%
!!! AACCAGTTGTGTTTTTAAGT+CGG + chr4_3:20744935-20744954 None:intergenic 30.0%
! TTATTTCTCGCACTTAATAG+AGG - chr4_3:20745033-20745052 Msa0634130:intron 30.0%
GTATATCTACACGATGAATA+TGG - chr4_3:20745136-20745155 Msa0634130:intron 30.0%
! TTCTTCAATACTGTCTGTTT+TGG - chr4_3:20745232-20745251 Msa0634130:intron 30.0%
AGTTATAAAACGACACTTTC+AGG + chr4_3:20745295-20745314 None:intergenic 30.0%
GTACTAAAGTAAATGAGTAG+GGG - chr4_3:20745373-20745392 Msa0634130:intron 30.0%
TACTAAAGTAAATGAGTAGG+GGG - chr4_3:20745374-20745393 Msa0634130:intron 30.0%
!! TGAAGAAGTATGCATGTTTT+TGG - chr4_3:20745432-20745451 Msa0634130:intron 30.0%
!! GAAGAAGTATGCATGTTTTT+GGG - chr4_3:20745433-20745452 Msa0634130:intron 30.0%
! TGGTAAAACACTTTTCTTCT+AGG + chr4_3:20745557-20745576 None:intergenic 30.0%
GTTGCTTGAAATCTTTCAAA+AGG + chr4_3:20745703-20745722 None:intergenic 30.0%
TATCTCAAATACACTTACCA+TGG + chr4_3:20745827-20745846 None:intergenic 30.0%
CCTTAGAAACCATTGTAAAA+TGG + chr4_3:20745932-20745951 None:intergenic 30.0%
! CCATTTTACAATGGTTTCTA+AGG - chr4_3:20745929-20745948 Msa0634130:intron 30.0%
! GATTTGAATTTTGTTCCTTG+AGG - chr4_3:20745953-20745972 Msa0634130:intron 30.0%
! TCTAATTTCAAGTATGCGTT+TGG - chr4_3:20746325-20746344 Msa0634130:intron 30.0%
AACTTCAAATTAAGGATGTG+TGG - chr4_3:20746425-20746444 Msa0634130:intron 30.0%
ACTTCAAATTAAGGATGTGT+GGG - chr4_3:20746426-20746445 Msa0634130:intron 30.0%
TGTGGGAAAAAAATGTCAAA+AGG - chr4_3:20746443-20746462 Msa0634130:intron 30.0%
TTGTGTGTGTGAGTTTATAA+TGG - chr4_3:20746576-20746595 Msa0634130:CDS 30.0%
AATGAGTGCAAGAGTTTCAA+GGG + chr4_3:20741338-20741357 None:intergenic 35.0%
AAATGAGTGCAAGAGTTTCA+AGG + chr4_3:20741339-20741358 None:intergenic 35.0%
ACTAATGAAGTGCAGAATCA+GGG + chr4_3:20741630-20741649 None:intergenic 35.0%
TCGAACCTAACACCTTAATA+AGG + chr4_3:20741723-20741742 None:intergenic 35.0%
AATCAGTTAGGGATGTGATT+TGG - chr4_3:20742048-20742067 Msa0634130:intron 35.0%
!! TCTAGCACTTGTTTTCCTAT+TGG - chr4_3:20742246-20742265 Msa0634130:CDS 35.0%
AGCCTGTATCAGATTATTAC+TGG - chr4_3:20742564-20742583 Msa0634130:intron 35.0%
!! AGAGTAGAATGGACTAGAAT+CGG - chr4_3:20742671-20742690 Msa0634130:intron 35.0%
GGTTGGAATTACATTTGGTT+AGG - chr4_3:20742747-20742766 Msa0634130:intron 35.0%
! GGTCCTAGATTTTCAAAAAC+AGG - chr4_3:20742980-20742999 Msa0634130:intron 35.0%
!! GAATTGGTAATGGAATAGAG+TGG + chr4_3:20743028-20743047 None:intergenic 35.0%
AAACCAAACACCAATCCAAA+AGG - chr4_3:20743144-20743163 Msa0634130:intron 35.0%
!!! TTACCTTTTGGATTGGTGTT+TGG + chr4_3:20743150-20743169 None:intergenic 35.0%
!!! GTTTTCTGGCTTGTTTTTCA+TGG + chr4_3:20743191-20743210 None:intergenic 35.0%
GCCAGAAAACTGTTACAATT+TGG - chr4_3:20743201-20743220 Msa0634130:intron 35.0%
TTGAGGAAGCAACATATTCT+TGG - chr4_3:20743336-20743355 Msa0634130:intron 35.0%
GAATTGGAAATCGGTGAATT+GGG + chr4_3:20743379-20743398 None:intergenic 35.0%
TGAATTGGAAATCGGTGAAT+TGG + chr4_3:20743380-20743399 None:intergenic 35.0%
ATTGTGTCAATTCCTAACAC+AGG - chr4_3:20743525-20743544 Msa0634130:intron 35.0%
TCATTCAACCCTTGCATATT+AGG - chr4_3:20743566-20743585 Msa0634130:intron 35.0%
CATATTAGGTTCTATGTTCC+TGG - chr4_3:20743580-20743599 Msa0634130:intron 35.0%
ACATACTACACAACAACACA+TGG + chr4_3:20743614-20743633 None:intergenic 35.0%
GTGTGCTTATTAGTGATGTT+AGG - chr4_3:20743653-20743672 Msa0634130:intron 35.0%
TGCTTATTAGTGATGTTAGG+TGG - chr4_3:20743656-20743675 Msa0634130:intron 35.0%
CTTGTGCGATGCTTAAAATT+CGG - chr4_3:20743887-20743906 Msa0634130:intron 35.0%
! AACATTGTCCGTTCTTTTAC+TGG - chr4_3:20744029-20744048 Msa0634130:CDS 35.0%
!! GCAAACATAAAAAGTGCTCT+GGG - chr4_3:20744303-20744322 Msa0634130:intron 35.0%
CTTATTTCCATAAGCATTCC+AGG + chr4_3:20744460-20744479 None:intergenic 35.0%
!! AAGTACTTTGAGACTGTTTG+AGG + chr4_3:20744516-20744535 None:intergenic 35.0%
AGATGAGATAAGAACCTCTA+TGG + chr4_3:20744682-20744701 None:intergenic 35.0%
! GGTTCTTATCTCATCTTTTG+TGG - chr4_3:20744686-20744705 Msa0634130:intron 35.0%
! TTACTCCTATGATGGAACTT+AGG - chr4_3:20744884-20744903 Msa0634130:intron 35.0%
! TACTCCTATGATGGAACTTA+GGG - chr4_3:20744885-20744904 Msa0634130:intron 35.0%
! TTTTCCCTAAGTTCCATCAT+AGG + chr4_3:20744892-20744911 None:intergenic 35.0%
!! ACTGTCTGTTTTGGATGAAA+TGG - chr4_3:20745241-20745260 Msa0634130:intron 35.0%
GGCACAGTTCATATACTAAT+TGG - chr4_3:20745262-20745281 Msa0634130:intron 35.0%
ACGCACTTAAAACTCTTTCA+GGG - chr4_3:20745759-20745778 Msa0634130:intron 35.0%
TTTCATTGGCACTTCAAAAC+AGG + chr4_3:20746084-20746103 None:intergenic 35.0%
CCTTGTAGTTCAAGATTCTT+GGG + chr4_3:20746208-20746227 None:intergenic 35.0%
TCCTTGTAGTTCAAGATTCT+TGG + chr4_3:20746209-20746228 None:intergenic 35.0%
CTACAAGGAAAACTTAGAAG+TGG - chr4_3:20746220-20746239 Msa0634130:intron 35.0%
!! ACACAATGATTTGGTGTGTT+TGG - chr4_3:20746389-20746408 Msa0634130:intron 35.0%
GGTTAAATGCCGAAATTGTT+AGG - chr4_3:20746533-20746552 Msa0634130:CDS 35.0%
TATAAACTCACACACACAAG+TGG + chr4_3:20746575-20746594 None:intergenic 35.0%
!!! TTTTTGGTTGGTAGACGAAA+TGG + chr4_3:20746607-20746626 None:intergenic 35.0%
! AAAAAATGGTAGGTACTGCT+AGG - chr4_3:20746630-20746649 Msa0634130:CDS 35.0%
! AAAAATGGTAGGTACTGCTA+GGG - chr4_3:20746631-20746650 Msa0634130:CDS 35.0%
AAGAAAGATGCAGATTGGAG+AGG - chr4_3:20741467-20741486 Msa0634130:three_prime_UTR 40.0%
!! CTTCACTTTTCGCCCTTTAA+CGG - chr4_3:20741550-20741569 Msa0634130:three_prime_UTR 40.0%
GACTAATGAAGTGCAGAATC+AGG + chr4_3:20741631-20741650 None:intergenic 40.0%
! TTAATAAGGAGCACACTCTC+AGG + chr4_3:20741709-20741728 None:intergenic 40.0%
! TGAGAGTGTGCTCCTTATTA+AGG - chr4_3:20741708-20741727 Msa0634130:three_prime_UTR 40.0%
! GTGCTCCTTATTAAGGTGTT+AGG - chr4_3:20741715-20741734 Msa0634130:three_prime_UTR 40.0%
AATACATTGAGGGGCTATTG+TGG - chr4_3:20741955-20741974 Msa0634130:intron 40.0%
TATACATCCAGGGACCAAAA+TGG - chr4_3:20741986-20742005 Msa0634130:intron 40.0%
! CAACAGGGTAATAGCCATTT+TGG + chr4_3:20742003-20742022 None:intergenic 40.0%
! TGTGTCCCACCATTTTATGT+GGG - chr4_3:20742281-20742300 Msa0634130:intron 40.0%
GAAATGGGTCCCACATAAAA+TGG + chr4_3:20742293-20742312 None:intergenic 40.0%
TCACGATATTCCGCTAAATC+TGG - chr4_3:20742466-20742485 Msa0634130:intron 40.0%
CGGCAAAAATCCAGATTTAG+CGG + chr4_3:20742479-20742498 None:intergenic 40.0%
! CGCTAAATCTGGATTTTTGC+CGG - chr4_3:20742477-20742496 Msa0634130:intron 40.0%
CCCTAGTTAAAATGGTCAAC+CGG + chr4_3:20742499-20742518 None:intergenic 40.0%
!!! CCGGTTGACCATTTTAACTA+GGG - chr4_3:20742496-20742515 Msa0634130:intron 40.0%
CTAGGGAACATACATTGTGA+TGG - chr4_3:20742513-20742532 Msa0634130:intron 40.0%
TGAAGCGCAAACATAGAACA+GGG + chr4_3:20742611-20742630 None:intergenic 40.0%
ATGAAGCGCAAACATAGAAC+AGG + chr4_3:20742612-20742631 None:intergenic 40.0%
TCATAGCTGGCTGATATGTT+TGG - chr4_3:20742628-20742647 Msa0634130:intron 40.0%
AGACACGCAGTCATATTTAG+CGG + chr4_3:20743263-20743282 None:intergenic 40.0%
TCATCAACAACTAAACGTGC+TGG - chr4_3:20743291-20743310 Msa0634130:intron 40.0%
!!! CTTTAGGTTTTGAAACTGCG+AGG - chr4_3:20743803-20743822 Msa0634130:intron 40.0%
CTTCTGCGATGTTCATTATC+TGG + chr4_3:20743844-20743863 None:intergenic 40.0%
AATGAACATCGCAGAAGAAG+AGG - chr4_3:20743847-20743866 Msa0634130:intron 40.0%
! TCCAAAGTCTTGTGATGGAA+AGG - chr4_3:20743992-20744011 Msa0634130:CDS 40.0%
TCCTTTCCATCACAAGACTT+TGG + chr4_3:20743996-20744015 None:intergenic 40.0%
! TTGTCCGTTCTTTTACTGGA+AGG - chr4_3:20744033-20744052 Msa0634130:CDS 40.0%
CAAGCCTTCCAGTAAAAGAA+CGG + chr4_3:20744040-20744059 None:intergenic 40.0%
!! CGCAAACATAAAAAGTGCTC+TGG - chr4_3:20744302-20744321 Msa0634130:intron 40.0%
!! GTTGTTTTCATGAGCTATCC+TGG - chr4_3:20744439-20744458 Msa0634130:intron 40.0%
TGATGGAACTTAGGGAAAAC+TGG - chr4_3:20744893-20744912 Msa0634130:intron 40.0%
! GACCGACTTAAAAACACAAC+TGG - chr4_3:20744930-20744949 Msa0634130:intron 40.0%
GATGCTCTTTCATTACCGAA+AGG - chr4_3:20744955-20744974 Msa0634130:intron 40.0%
TTCTCGCACTTAATAGAGGT+TGG - chr4_3:20745037-20745056 Msa0634130:intron 40.0%
TACCTCAACTCTAACTTCAG+AGG - chr4_3:20745106-20745125 Msa0634130:intron 40.0%
!! AACCTCTGAAGTTAGAGTTG+AGG + chr4_3:20745111-20745130 None:intergenic 40.0%
TCAACTCTAACTTCAGAGGT+TGG - chr4_3:20745110-20745129 Msa0634130:intron 40.0%
CATGTTGACCATTCGATCTA+TGG + chr4_3:20745176-20745195 None:intergenic 40.0%
GCATTTATTATGGACCATGC+AGG + chr4_3:20745409-20745428 None:intergenic 40.0%
ACTAGTGATCACTGATGAGA+GGG + chr4_3:20745581-20745600 None:intergenic 40.0%
!! ACTCGATAGTGTCGATAGAA+TGG + chr4_3:20745627-20745646 None:intergenic 40.0%
GACGCACTTAAAACTCTTTC+AGG - chr4_3:20745758-20745777 Msa0634130:intron 40.0%
CGCACTTAAAACTCTTTCAG+GGG - chr4_3:20745760-20745779 Msa0634130:intron 40.0%
AGTTTGATCTCGTAACCTCA+AGG + chr4_3:20745971-20745990 None:intergenic 40.0%
GAGAGATATTTCTCCACATC+AGG - chr4_3:20746160-20746179 Msa0634130:intron 40.0%
! TTCAGTTTTCTGACCTGATG+TGG + chr4_3:20746176-20746195 None:intergenic 40.0%
CCCAAGAATCTTGAACTACA+AGG - chr4_3:20746205-20746224 Msa0634130:intron 40.0%
GTTTGGAAGTTGCGAGAAAA+TGG - chr4_3:20746342-20746361 Msa0634130:intron 40.0%
AAATGCCGAAATTGTTAGGC+CGG - chr4_3:20746537-20746556 Msa0634130:CDS 40.0%
AGGATTGTGTTCATTGACAC+TGG + chr4_3:20746722-20746741 None:intergenic 40.0%
TCAATGAACACAATCCTGCA+AGG - chr4_3:20746725-20746744 Msa0634130:CDS 40.0%
TGTCAACATAAGATCCTTGC+AGG + chr4_3:20746742-20746761 None:intergenic 40.0%
GGAGGAAGAAAGATGCAGAT+TGG - chr4_3:20741462-20741481 Msa0634130:three_prime_UTR 45.0%
AAAGATGCAGATTGGAGAGG+AGG - chr4_3:20741470-20741489 Msa0634130:three_prime_UTR 45.0%
!! TTCTCTCTTGGTGTCGACTT+AGG - chr4_3:20741494-20741513 Msa0634130:three_prime_UTR 45.0%
!! TCTTGGTGTCGACTTAGGAA+TGG - chr4_3:20741499-20741518 Msa0634130:three_prime_UTR 45.0%
CTAAAGTAGCCCACCCAAAT+TGG + chr4_3:20741756-20741775 None:intergenic 45.0%
TGGCTACTCGTTATACATCC+AGG - chr4_3:20741975-20741994 Msa0634130:intron 45.0%
GGCTACTCGTTATACATCCA+GGG - chr4_3:20741976-20741995 Msa0634130:intron 45.0%
!! GTAATAGCCATTTTGGTCCC+TGG + chr4_3:20741996-20742015 None:intergenic 45.0%
! ACAAGTGCTAGAGAGAGTGT+TGG + chr4_3:20742238-20742257 None:intergenic 45.0%
! GTGTGTCCCACCATTTTATG+TGG - chr4_3:20742280-20742299 Msa0634130:intron 45.0%
TGGGTCCCACATAAAATGGT+GGG + chr4_3:20742289-20742308 None:intergenic 45.0%
ATGGGTCCCACATAAAATGG+TGG + chr4_3:20742290-20742309 None:intergenic 45.0%
TGGGACCCATTTCAAAAGTG+CGG - chr4_3:20742300-20742319 Msa0634130:intron 45.0%
!!! AGGTCCCGCACTTTTGAAAT+GGG + chr4_3:20742308-20742327 None:intergenic 45.0%
!! TAGGTCCCGCACTTTTGAAA+TGG + chr4_3:20742309-20742328 None:intergenic 45.0%
!!! GCCGGTTGACCATTTTAACT+AGG - chr4_3:20742495-20742514 Msa0634130:intron 45.0%
! TTTCGCGAGTTTTTCCTTCG+CGG - chr4_3:20742536-20742555 Msa0634130:intron 45.0%
CTATGTTTGCGCTTCATAGC+TGG - chr4_3:20742615-20742634 Msa0634130:intron 45.0%
GCTGGCTGATATGTTTGGAT+TGG - chr4_3:20742633-20742652 Msa0634130:intron 45.0%
! TGGACTAGAATCGGCTAGTT+AGG - chr4_3:20742680-20742699 Msa0634130:intron 45.0%
! GGACTAGAATCGGCTAGTTA+GGG - chr4_3:20742681-20742700 Msa0634130:intron 45.0%
!! CTGTTACAATTTGGTGCAGC+AGG - chr4_3:20743210-20743229 Msa0634130:intron 45.0%
TAGCGATTCTGACCTGTGTT+AGG + chr4_3:20743540-20743559 None:intergenic 45.0%
CAACACATGGTATCATTCCC+AGG + chr4_3:20743601-20743620 None:intergenic 45.0%
! GGACTTCCAAAGTCTTGTGA+TGG - chr4_3:20743987-20744006 Msa0634130:CDS 45.0%
GAGCTATCCTGGAATGCTTA+TGG - chr4_3:20744450-20744469 Msa0634130:intron 45.0%
! GACATAGAGCATCTCCATAG+AGG - chr4_3:20744665-20744684 Msa0634130:intron 45.0%
ACAAGAACCATCCTTACACC+TGG - chr4_3:20744848-20744867 Msa0634130:intron 45.0%
AAATGCCGCCATAGATCGAA+TGG - chr4_3:20745165-20745184 Msa0634130:intron 45.0%
GTTGACCATTCGATCTATGG+CGG + chr4_3:20745173-20745192 None:intergenic 45.0%
GACTAGTGATCACTGATGAG+AGG + chr4_3:20745582-20745601 None:intergenic 45.0%
! GGCATCTTGTTTCTTCTGCT+GGG + chr4_3:20745797-20745816 None:intergenic 45.0%
! AGGCATCTTGTTTCTTCTGC+TGG + chr4_3:20745798-20745817 None:intergenic 45.0%
TACACTTACCATGGCAGCAT+AGG + chr4_3:20745818-20745837 None:intergenic 45.0%
! AGCACTGTGTTGACATCTCA+TGG - chr4_3:20745994-20746013 Msa0634130:intron 45.0%
TCTAGAAGTCCTAGCTCAAC+TGG - chr4_3:20746512-20746531 Msa0634130:CDS 45.0%
GGCATTTAACCAGTTGAGCT+AGG + chr4_3:20746524-20746543 None:intergenic 45.0%
AAACTCACACACACAAGTGG+AGG + chr4_3:20746572-20746591 None:intergenic 45.0%
AAGAGTTTCAAGGGTGGCAC+TGG + chr4_3:20741329-20741348 None:intergenic 50.0%
GAGTGCAAGAGTTTCAAGGG+TGG + chr4_3:20741335-20741354 None:intergenic 50.0%
AACTTCCTCCAAACGCGCTT+CGG - chr4_3:20741441-20741460 Msa0634130:three_prime_UTR 50.0%
GACTTAGGAATGGCTCGTAC+TGG - chr4_3:20741509-20741528 Msa0634130:three_prime_UTR 50.0%
ACTGGCATTGCTCTCAGCAA+AGG - chr4_3:20741527-20741546 Msa0634130:three_prime_UTR 50.0%
TCTCTCAATAACCCGCCTAG+CGG - chr4_3:20741670-20741689 Msa0634130:three_prime_UTR 50.0%
AATAACCCGCCTAGCGGTAT+TGG - chr4_3:20741676-20741695 Msa0634130:three_prime_UTR 50.0%
TCGATTCTCCCGTGCCAATT+TGG - chr4_3:20741739-20741758 Msa0634130:three_prime_UTR 50.0%
CGATTCTCCCGTGCCAATTT+GGG - chr4_3:20741740-20741759 Msa0634130:three_prime_UTR 50.0%
! GGGACCCATTTCAAAAGTGC+GGG - chr4_3:20742301-20742320 Msa0634130:intron 50.0%
ATACAGGCTATTCACCGCGA+AGG + chr4_3:20742553-20742572 None:intergenic 50.0%
ACTGCGAGGACAGAAACTTG+AGG - chr4_3:20743817-20743836 Msa0634130:intron 50.0%
ACATCGCAGAAGAAGAGGTC+TGG - chr4_3:20743852-20743871 Msa0634130:intron 50.0%
TTGCTAATCGAGCTGCTGAG+AGG - chr4_3:20744057-20744076 Msa0634130:CDS 50.0%
GCGCAAGCTTACTCCTATGA+TGG - chr4_3:20744876-20744895 Msa0634130:intron 50.0%
GGGGGAAATTGAAACCTGCA+TGG - chr4_3:20745392-20745411 Msa0634130:intron 50.0%
GTGATCACTGATGAGAGGGT+TGG + chr4_3:20745577-20745596 None:intergenic 50.0%
ACTCTTTCAGGGGCTTGAGT+AGG - chr4_3:20745770-20745789 Msa0634130:intron 50.0%
ACAAGATGCCTATGCTGCCA+TGG - chr4_3:20745807-20745826 Msa0634130:intron 50.0%
! ACACACACAAGTGGAGGTAC+CGG + chr4_3:20746566-20746585 None:intergenic 50.0%
TTCTTCCTCCGAAGCGCGTT+TGG + chr4_3:20741452-20741471 None:intergenic 55.0%
TGGAGAGGAGGCTTCTCTCT+TGG - chr4_3:20741482-20741501 Msa0634130:three_prime_UTR 55.0%
CCAAACCAATACCGCTAGGC+GGG + chr4_3:20741684-20741703 None:intergenic 55.0%
CCCAAACCAATACCGCTAGG+CGG + chr4_3:20741685-20741704 None:intergenic 55.0%
!! CCGCCTAGCGGTATTGGTTT+GGG - chr4_3:20741682-20741701 Msa0634130:three_prime_UTR 55.0%
GGTCCCAAACCAATACCGCT+AGG + chr4_3:20741688-20741707 None:intergenic 55.0%
TTCTCCCGTGCCAATTTGGG+TGG - chr4_3:20741743-20741762 Msa0634130:three_prime_UTR 55.0%
TCTCCCGTGCCAATTTGGGT+GGG - chr4_3:20741744-20741763 Msa0634130:three_prime_UTR 55.0%
TAGCCCACCCAAATTGGCAC+GGG + chr4_3:20741750-20741769 None:intergenic 55.0%
GTAGCCCACCCAAATTGGCA+CGG + chr4_3:20741751-20741770 None:intergenic 55.0%
!! CAATTTGGTGCAGCAGGCTC+TGG - chr4_3:20743216-20743235 Msa0634130:intron 55.0%
! AAAGTGCTCTGGGCTCTGTC+TGG - chr4_3:20744313-20744332 Msa0634130:intron 55.0%
GCAGATGCCAGGTGTAAGGA+TGG + chr4_3:20744858-20744877 None:intergenic 55.0%
TTGCGCAGATGCCAGGTGTA+AGG + chr4_3:20744862-20744881 None:intergenic 55.0%
AGTAAGCTTGCGCAGATGCC+AGG + chr4_3:20744869-20744888 None:intergenic 55.0%
GGGGTCCGGCCTAACAATTT+CGG + chr4_3:20746545-20746564 None:intergenic 55.0%
GAAATTGTTAGGCCGGACCC+CGG - chr4_3:20746544-20746563 Msa0634130:CDS 55.0%
!! ACACACAAGTGGAGGTACCG+GGG + chr4_3:20746564-20746583 None:intergenic 55.0%
!! CACACACAAGTGGAGGTACC+GGG + chr4_3:20746565-20746584 None:intergenic 55.0%
TTCCTCCAAACGCGCTTCGG+AGG - chr4_3:20741444-20741463 Msa0634130:three_prime_UTR 60.0%
TTCCTCCGAAGCGCGTTTGG+AGG + chr4_3:20741449-20741468 None:intergenic 60.0%
!! CCCGCCTAGCGGTATTGGTT+TGG - chr4_3:20741681-20741700 Msa0634130:three_prime_UTR 60.0%
!! CAAGTGGAGGTACCGGGGTC+CGG + chr4_3:20746559-20746578 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 20741275 20746785 20741275 ID=Msa0634130;Name=Msa0634130
chr4_3 mRNA 20741275 20746785 20741275 ID=Msa0634130-mRNA-1;Parent=Msa0634130;Name=Msa0634130-mRNA-1;_AED=0.17;_eAED=0.17;_QI=24|1|1|1|1|1|6|503|231
chr4_3 exon 20741275 20741909 20741275 ID=Msa0634130-mRNA-1:exon:5494;Parent=Msa0634130-mRNA-1
chr4_3 exon 20742232 20742280 20742232 ID=Msa0634130-mRNA-1:exon:5493;Parent=Msa0634130-mRNA-1
chr4_3 exon 20742866 20742934 20742866 ID=Msa0634130-mRNA-1:exon:5492;Parent=Msa0634130-mRNA-1
chr4_3 exon 20743982 20744094 20743982 ID=Msa0634130-mRNA-1:exon:5491;Parent=Msa0634130-mRNA-1
chr4_3 exon 20744192 20744251 20744192 ID=Msa0634130-mRNA-1:exon:5490;Parent=Msa0634130-mRNA-1
chr4_3 exon 20746489 20746785 20746489 ID=Msa0634130-mRNA-1:exon:5489;Parent=Msa0634130-mRNA-1
chr4_3 five_prime_UTR 20746762 20746785 20746762 ID=Msa0634130-mRNA-1:five_prime_utr;Parent=Msa0634130-mRNA-1
chr4_3 CDS 20746489 20746761 20746489 ID=Msa0634130-mRNA-1:cds;Parent=Msa0634130-mRNA-1
chr4_3 CDS 20744192 20744251 20744192 ID=Msa0634130-mRNA-1:cds;Parent=Msa0634130-mRNA-1
chr4_3 CDS 20743982 20744094 20743982 ID=Msa0634130-mRNA-1:cds;Parent=Msa0634130-mRNA-1
chr4_3 CDS 20742866 20742934 20742866 ID=Msa0634130-mRNA-1:cds;Parent=Msa0634130-mRNA-1
chr4_3 CDS 20742232 20742280 20742232 ID=Msa0634130-mRNA-1:cds;Parent=Msa0634130-mRNA-1
chr4_3 CDS 20741778 20741909 20741778 ID=Msa0634130-mRNA-1:cds;Parent=Msa0634130-mRNA-1
chr4_3 three_prime_UTR 20741275 20741777 20741275 ID=Msa0634130-mRNA-1:three_prime_utr;Parent=Msa0634130-mRNA-1
Gene Sequence

>Msa0634130

ATGTGGACGCAGCAGCAGCTTGTACAACCAGTGCCACCCTTGAAACTCTTGCACTCATTTCCACCTTCAAATCATGCAAAAATTCAATCTTTATCAAAATTAAATTCGACCAACAATCTAAAAACAGCATTAACTTTGGAAGAACTTCCTCCAAACGCGCTTCGGAGGAAGAAAGATGCAGATTGGAGAGGAGGCTTCTCTCTTGGTGTCGACTTAGGAATGGCTCGTACTGGCATTGCTCTCAGCAAAGGCTTCACTTTTCGCCCTTTAACGGTTTTGAAACTGCGAGGACAGAAACTTGAGGTCCAGATAATGAACATCGCAGAAGAAGAGGAAGCTGATGAGTTTATAATTGGACTTCCAAAGTCTTGTGATGGAAAGGAAACGATACAGTCAAACATTGTCCGTTCTTTTACTGGAAGGCTTGCTAATCGAGCTGCTGAGAGAGGTTGGAGAGTATATCTACACGATGAATATGGGACGACAAATGCCGCCATAGATCGAATGGTCAACATGGGCTTGAGTAGGTCCCAGCAGAAGAAACAAGATGCCTATGCTGCCATGATGTTACTTGAGAGATATTTCTCCACATCAGGTCAGAAAACTGAACTTGTTGTGCCCAAGAATCTTGAACTACAAGGAAAACTTAGAAGTGGTCCTCTCAAAGATGATGATTATTTCTCAGACGAAGATTAA
Protein sequence

>Msa0634130

MWTQQQLVQPVPPLKLLHSFPPSNHAKIQSLSKLNSTNNLKTALTLEELPPNALRRKKDADWRGGFSLGVDLGMARTGIALSKGFTFRPLTVLKLRGQKLEVQIMNIAEEEEADEFIIGLPKSCDGKETIQSNIVRSFTGRLANRAAERGWRVYLHDEYGTTNAAIDRMVNMGLSRSQQKKQDAYAAMMLLERYFSTSGQKTELVVPKNLELQGKLRSGPLKDDDYFSDED*