AlfalfaGEDB | Msa0563530

M. sativa cultivar zhongmu-4 / Msa0563530

KEGG: -
GO: GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598
PFAM: PF14237.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0563530	XP_003604569.1	93.204	515	32	1	1	515	1	512	0.0	904

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0563530	sp\|Q7Y1W1\|TIC56_ARATH	59.756	492	186	6	1	487	1	485	0.0	614

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0563530	G7JLT3	93.204	515	32	1	1	515	1	512	0.0	904

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000780	Msa0563530	0.829529	4.892773e-55	-8.615850e-47
Msa0001460	Msa0563530	0.821077	4.891913e-53	-8.615850e-47
Msa0001950	Msa0563530	0.852329	4.959435e-61	-8.615850e-47
Msa0003470	Msa0563530	0.815081	1.110029e-51	-8.615850e-47
Msa0012460	Msa0563530	0.811041	8.536915e-51	-8.615850e-47
Msa0017120	Msa0563530	0.828901	6.947537e-55	-8.615850e-47
Msa0017940	Msa0563530	0.870972	9.736545e-67	-8.615850e-47
Msa0018220	Msa0563530	0.810030	1.411303e-50	-8.615850e-47
Msa0020630	Msa0563530	0.812555	3.996371e-51	-8.615850e-47
Msa0024680	Msa0563530	0.860165	2.498249e-63	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0563530	MtrunA17_Chr4g0005621	93.204	515	32	1	1	515	1	512	0.0	904

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0563530	AT5G01590.1	59.756	492	186	6	1	487	1	485	0.0	614

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Find 181 sgRNAs with CRISPR-Local

Find 385 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTATGAAAATGAAATG+TGG	0.520486	4_1:+63905895	Msa0563530:three_prime_UTR
AAAGAATGGAGATAATTAGG+AGG	0.582537	4_1:+63905649	Msa0563530:CDS
AAATTATGAAAATGAAATGT+GGG	0.456150	4_1:+63905896	Msa0563530:three_prime_UTR
AAGAAAGTTCCGCATATTAC+TGG	0.304538	4_1:+63901235	Msa0563530:CDS
AAGGTTGTCCGGTGAGGAGG+AGG	0.476873	4_1:+63905698	Msa0563530:CDS
AAGTTGAGAAGGGAGGTGAG+AGG	0.597273	4_1:-63900824	None:intergenic
AAGTTGGCTAAACTAATTCC+AGG	0.428800	4_1:+63905178	Msa0563530:CDS
AATCCCTTAACAGGAACCCA+TGG	0.648355	4_1:-63904527	None:intergenic
AATGGAGATAATTAGGAGGA+GGG	0.537053	4_1:+63905653	Msa0563530:CDS
AATGGCATCGCCAATCTGGC+GGG	0.552417	4_1:+63905558	Msa0563530:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTGTTAAAGTGTAAGGATA+AGG	-	chr4_1:63900688-63900707	None:intergenic	30.0%
CACATTCATAGAAGAATTGT+TGG	-	chr4_1:63900970-63900989	None:intergenic	30.0%
TTTGATGCAGTCATATGATT+TGG	+	chr4_1:63901530-63901549	Msa0563530:intron	30.0%
ACAATCAAATCCCTAATACT+AGG	+	chr4_1:63902144-63902163	Msa0563530:intron	30.0%
GCTTAGATACATAGAATAAG+TGG	-	chr4_1:63902177-63902196	None:intergenic	30.0%
TGTAGAGTAACAGAATTTGA+AGG	-	chr4_1:63902341-63902360	None:intergenic	30.0%
ACTTTGTACTAAATGACCTA+TGG	+	chr4_1:63902399-63902418	Msa0563530:intron	30.0%
ATGCTTAGGATTGAATATGT+AGG	+	chr4_1:63902866-63902885	Msa0563530:intron	30.0%
AGTGGTAAAATACTAAACTC+TGG	+	chr4_1:63903116-63903135	Msa0563530:intron	30.0%
GTAAAATACTAAACTCTGGA+TGG	+	chr4_1:63903120-63903139	Msa0563530:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	63900626	63906087	63900626	ID=Msa0563530;Name=Msa0563530
chr4_1	mRNA	63900626	63906087	63900626	ID=Msa0563530-mRNA-1;Parent=Msa0563530;Name=Msa0563530-mRNA-1;_AED=0.03;_eAED=0.03;_QI=120\|1\|1\|1\|1\|1\|5\|344\|515
chr4_1	exon	63900626	63901445	63900626	ID=Msa0563530-mRNA-1:exon:20359;Parent=Msa0563530-mRNA-1
chr4_1	exon	63903232	63903429	63903232	ID=Msa0563530-mRNA-1:exon:20360;Parent=Msa0563530-mRNA-1
chr4_1	exon	63904471	63904753	63904471	ID=Msa0563530-mRNA-1:exon:20361;Parent=Msa0563530-mRNA-1
chr4_1	exon	63905174	63905336	63905174	ID=Msa0563530-mRNA-1:exon:20362;Parent=Msa0563530-mRNA-1
chr4_1	exon	63905540	63906087	63905540	ID=Msa0563530-mRNA-1:exon:20363;Parent=Msa0563530-mRNA-1
chr4_1	five_prime_UTR	63900626	63900745	63900626	ID=Msa0563530-mRNA-1:five_prime_utr;Parent=Msa0563530-mRNA-1
chr4_1	CDS	63900746	63901445	63900746	ID=Msa0563530-mRNA-1:cds;Parent=Msa0563530-mRNA-1
chr4_1	CDS	63903232	63903429	63903232	ID=Msa0563530-mRNA-1:cds;Parent=Msa0563530-mRNA-1
chr4_1	CDS	63904471	63904753	63904471	ID=Msa0563530-mRNA-1:cds;Parent=Msa0563530-mRNA-1
chr4_1	CDS	63905174	63905336	63905174	ID=Msa0563530-mRNA-1:cds;Parent=Msa0563530-mRNA-1
chr4_1	CDS	63905540	63905743	63905540	ID=Msa0563530-mRNA-1:cds;Parent=Msa0563530-mRNA-1
chr4_1	three_prime_UTR	63905744	63906087	63905744	ID=Msa0563530-mRNA-1:three_prime_utr;Parent=Msa0563530-mRNA-1

Gene Sequence

>Msa0563530

ATGTCTTCCATCAACTTCAACCCATTCAACGGAAACTGGTTCCCATTCTCAAAACCACCAACTCCCCTCCCTCTTCCTCCTCTCACCTCCCTTCTCAACTTCTCCAATTCCTCAAATTTCGCATCAACCTCCCTCTCCACCACCAACACCTCCAATTCCACCACCACCGCCACCGCCGTCGAAGATGAAGACGCCGAACCCGGTCCATTCACCAAAATGGTCCAACAATTCTTCTATGAATGTGACTATCTCCCTAACCACAGACACACACCACAAGTCAACAAAGTCCTCAACGAAAACGACGCATACGAAGCTAAACCAAATGCAACGGAACAAGAAATGAACGAAAACGAAGAGTTTATGAATGAAATGTATAACAATCCAGTTATACACTTTCTGATGAGAGCTGAATATATAGCTGATAAGATGAATGAGTGGGAGTTGAAGAAGAATGAGAAACCTCATAAGCCTGAAGATAGAGAGCTTTGGAAGAAAGTTCCGCATATTACTGGGCTTGATGGGAGGCCTATGCCGAGAAAAGCGCAGTCACGGTATGTAGCGCTAGATAAGTTTTGGGATTTTGCTAGACAGTTTTATTTGGGGATTTGGGGGTTTTGGCAAAGGCCTTATCCTCCTGGGAAGCCGATTGATGTTGCTCAAGCTATTGGGTATAACAGTCTCGAGAATCGATACTATGATTTTATCATGAGGAGTGGTGTATGGTTCTATAAGGATCGGCTGGGTCGAACCCGAGGGCCATTGGCATTGCATACACTTAAAACTGCTTGGGGTGGTGGGGTTATTGATAAAAACACTTTCATTTGGGGGGAGGACATGGATGAATGGGCACCCATCCACATGATTTATGGAATGGAGCGTGCAATCGCTACTTGGGAAGTTCGACTTGCTGCTTCAGCGACAGCTTTCTTTCACAAACTACAAAAAGGTATACCACCATGGGTTCCTGTTAAGGGATTTGAAAAGAAGACTTATAAGCAGCTTCAACATGAGGCGGTGGAAAGCAAGAGACGTGATTTAGCAGTGATGGAAGCTAATGATGGCCTCTGGCCTGGAGTTAGAATTCCTAGTCATGCCCTATTTCTTTGGGCCAGCGGCACTGAACTGACTACTACTTTGGAACAGGATCACATGCCCAACAAGTACATTCCCAAAGATCTTAGACAGAAGTTGGCTAAACTAATTCCAGGATTGAGGCCATGGGAAGTTCTGAGCATAGAACAAGCAATGGATCGAATAACATTCAATGGCGAATGGTACCGTGAACCACTTGGTTCGTACAACACAGGTCCACCATTCATCAGGCGTTGGAATGCCGACAGGATGAGGCTCTATGATGTAATTAATGGCATCGCCAATCTGGCGGGTGATGTAATGAATGCGAGATTTCCTGGCTTTGATAAAATTCAGAAAAAAGTCAGGGAGGATTCTATTAAAAGAATGGAGATAATTAGGAGGAGGGTCAAGAGAGAGGCCCGCCTTAGAAGGTTGTCCGGTGAGGAGGAGGAGGAGGAACGGCCAAAAAATTAG

Protein sequence

>Msa0563530

MSSINFNPFNGNWFPFSKPPTPLPLPPLTSLLNFSNSSNFASTSLSTTNTSNSTTTATAVEDEDAEPGPFTKMVQQFFYECDYLPNHRHTPQVNKVLNENDAYEAKPNATEQEMNENEEFMNEMYNNPVIHFLMRAEYIADKMNEWELKKNEKPHKPEDRELWKKVPHITGLDGRPMPRKAQSRYVALDKFWDFARQFYLGIWGFWQRPYPPGKPIDVAQAIGYNSLENRYYDFIMRSGVWFYKDRLGRTRGPLALHTLKTAWGGGVIDKNTFIWGEDMDEWAPIHMIYGMERAIATWEVRLAASATAFFHKLQKGIPPWVPVKGFEKKTYKQLQHEAVESKRRDLAVMEANDGLWPGVRIPSHALFLWASGTELTTTLEQDHMPNKYIPKDLRQKLAKLIPGLRPWEVLSIEQAMDRITFNGEWYREPLGSYNTGPPFIRRWNADRMRLYDVINGIANLAGDVMNARFPGFDKIQKKVREDSIKRMEIIRRRVKREARLRRLSGEEEEEERPKN*