AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0854570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0854570 MtrunA17_Chr5g0423271 96.154 130 5 0 1 130 413 542 7.95e-81 247
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0854570 AT1G48520.1 81.538 130 24 0 1 130 419 548 1.77e-69 218
Msa0854570 AT1G48520.3 82.090 67 12 0 1 67 419 485 4.81e-30 112
Msa0854570 AT1G48520.2 82.222 45 8 0 1 45 419 463 1.57e-18 80.5

Find 47 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGATGGTTCCATCTTTAA+TGG 0.209889 5_4:-47194173 None:intergenic
TGTAAGCTTTACGTCATTTA+TGG 0.214602 5_4:-47194122 None:intergenic
TACAATAACCAATCACAATT+TGG 0.269471 5_4:+47195821 Msa0854570:three_prime_UTR
TCAAAAGAAAACTACGGATT+AGG 0.294992 5_4:+47195906 Msa0854570:three_prime_UTR
CGGTATTGCTCAACCTGTTT+CGG 0.296397 5_4:-47195562 None:intergenic
CAAAATTTGGAATATGTATA+AGG 0.319071 5_4:+47196148 Msa0854570:three_prime_UTR
ATCAACTCAGCCAACTCTTC+AGG 0.348581 5_4:-47194145 None:intergenic
TTTGGAGAATCGCAGAAATC+TGG 0.357175 5_4:+47195839 Msa0854570:three_prime_UTR
TTCCTTGACACTTCCACCCT+TGG 0.364393 5_4:-47194728 None:intergenic
AGAAAAGAAGGACTTGGTTC+AGG 0.386903 5_4:+47194756 Msa0854570:CDS
GCGATTCTCCAAATTGTGAT+TGG 0.409212 5_4:-47195829 None:intergenic
AAATTGTGATTGGTTATTGT+AGG 0.413371 5_4:-47195819 None:intergenic
TTGATTGCTTCCATTAAAGA+TGG 0.413858 5_4:+47194163 Msa0854570:CDS
CTTCCCGATCTTGCCACTGA+TGG 0.416937 5_4:-47194188 None:intergenic
TCTACTTAACAAGATTCTCT+TGG 0.443250 5_4:+47195749 Msa0854570:CDS
GGAACCATCAGTGGCAAGAT+CGG 0.455897 5_4:+47194184 Msa0854570:CDS
TGGATAATGAGTGACATTGC+TGG 0.466407 5_4:+47194076 Msa0854570:exon
ATGCAAAGCTAGTTGCCAAC+TGG 0.470558 5_4:+47194056 Msa0854570:five_prime_UTR
GATCGCAGATAATCCGAAAC+AGG 0.471768 5_4:+47195549 Msa0854570:CDS
GAACCATCAGTGGCAAGATC+GGG 0.490650 5_4:+47194185 Msa0854570:CDS
TGTCCAAATGCAGGTAATGA+AGG 0.496036 5_4:+47195701 Msa0854570:intron
CAAGGAAATCATAGAAAAGA+AGG 0.496302 5_4:+47194744 Msa0854570:CDS
TCACTTAGCTGAAGCTAACA+TGG 0.521603 5_4:-47196051 None:intergenic
TTTGATGCTACTCTTGCAAA+GGG 0.524915 5_4:+47194028 Msa0854570:five_prime_UTR
CAGGTAATGAAGGCATCTAA+AGG 0.530365 5_4:+47195711 Msa0854570:intron
AGAATCTTGTTAAGTAGACC+TGG 0.533378 5_4:-47195744 None:intergenic
CAGAAATCTGGAAAATTGAA+AGG 0.540151 5_4:+47195851 Msa0854570:three_prime_UTR
AATATTTCAAAAGAAAACTA+CGG 0.551207 5_4:+47195900 Msa0854570:three_prime_UTR
ACTATTTGAGCTGTTAGCCA+AGG 0.556875 5_4:+47194711 Msa0854570:CDS
AAAGCTTACACCTGAAGAGT+TGG 0.568134 5_4:+47194135 Msa0854570:CDS
AATCATAGAAAAGAAGGACT+TGG 0.570914 5_4:+47194750 Msa0854570:CDS
TTTGAGCTGTTAGCCAAGGG+TGG 0.582248 5_4:+47194715 Msa0854570:CDS
AATGTCACTCATTATCCAGT+TGG 0.593782 5_4:-47194071 None:intergenic
GAATCTTGTTAAGTAGACCT+GGG 0.597544 5_4:-47195743 None:intergenic
AGCCAAGGGTGGAAGTGTCA+AGG 0.597653 5_4:+47194726 Msa0854570:CDS
ATTAAAGATGGAACCATCAG+TGG 0.598421 5_4:+47194175 Msa0854570:CDS
CTATTTGAGCTGTTAGCCAA+GGG 0.599372 5_4:+47194712 Msa0854570:CDS
AATAATGATCAAAACAGTGA+CGG 0.609661 5_4:+47196079 Msa0854570:three_prime_UTR
CAGTGGCAAGATCGGGAAGG+AGG 0.617613 5_4:+47194192 Msa0854570:CDS
AATGAAGGCATCTAAAGGCA+AGG 0.623180 5_4:+47195716 Msa0854570:CDS
GGAGGCAAAACTAAACTCCA+AGG 0.626684 5_4:+47195586 Msa0854570:CDS
TCTAAAGGCAAGGCAAACCC+AGG 0.631689 5_4:+47195726 Msa0854570:CDS
CAGTGACGGAAAATATCTAG+AGG 0.650422 5_4:+47196093 Msa0854570:three_prime_UTR
CATCAGTGGCAAGATCGGGA+AGG 0.654102 5_4:+47194189 Msa0854570:CDS
CAGGTTGAGCAATACCGAGG+AGG 0.701313 5_4:+47195568 Msa0854570:CDS
AAACAGGTTGAGCAATACCG+AGG 0.723621 5_4:+47195565 Msa0854570:CDS
CATGTACAGAATTACCCACG+TGG 0.750170 5_4:+47195997 Msa0854570:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGTTATATACTATTTGTTT+AGG + chr5_4:47194427-47194446 Msa0854570:intron 15.0%
!!! TATTTTTATTTGATTTAGGA+GGG - chr5_4:47195389-47195408 None:intergenic 15.0%
!!! TTATTTTTATTTGATTTAGG+AGG - chr5_4:47195390-47195409 None:intergenic 15.0%
!! AATATTTCAAAAGAAAACTA+CGG + chr5_4:47195900-47195919 Msa0854570:three_prime_UTR 15.0%
!! TTGTTATATACTATTTGTTT+AGG + chr5_4:47194427-47194446 Msa0854570:intron 15.0%
!!! TATTTTTATTTGATTTAGGA+GGG - chr5_4:47195389-47195408 None:intergenic 15.0%
!!! TTATTTTTATTTGATTTAGG+AGG - chr5_4:47195390-47195409 None:intergenic 15.0%
!! AATATTTCAAAAGAAAACTA+CGG + chr5_4:47195900-47195919 Msa0854570:three_prime_UTR 15.0%
!! ACTTTATAAATTAAACCCAT+TGG - chr5_4:47194364-47194383 None:intergenic 20.0%
!!! TTTTTGAGACAAACAAAATT+TGG + chr5_4:47196135-47196154 Msa0854570:three_prime_UTR 20.0%
!!! CAAAATTTGGAATATGTATA+AGG + chr5_4:47196148-47196167 Msa0854570:three_prime_UTR 20.0%
!! ACTTTATAAATTAAACCCAT+TGG - chr5_4:47194364-47194383 None:intergenic 20.0%
!!! TTTTTGAGACAAACAAAATT+TGG + chr5_4:47196135-47196154 Msa0854570:three_prime_UTR 20.0%
!!! CAAAATTTGGAATATGTATA+AGG + chr5_4:47196148-47196167 Msa0854570:three_prime_UTR 20.0%
! AATCACACATTCGTTATAAT+GGG + chr5_4:47194641-47194660 Msa0854570:intron 25.0%
! TGAGTCAATTATATACAAAC+TGG - chr5_4:47194816-47194835 None:intergenic 25.0%
! ACAAAAACAGAATTCATATG+TGG - chr5_4:47195035-47195054 None:intergenic 25.0%
! TATATGAGAGATGTAAAACT+GGG - chr5_4:47195204-47195223 None:intergenic 25.0%
! TTATATGAGAGATGTAAAAC+TGG - chr5_4:47195205-47195224 None:intergenic 25.0%
!!! GGGGATATTTTTTCAAATTT+TGG - chr5_4:47195323-47195342 None:intergenic 25.0%
! TAATAATAAAGTTGTCAGAG+TGG - chr5_4:47195472-47195491 None:intergenic 25.0%
! TCCTGTTGAAATTGAAAAAA+TGG + chr5_4:47195516-47195535 Msa0854570:CDS 25.0%
!!! ACCATTTTTTCAATTTCAAC+AGG - chr5_4:47195520-47195539 None:intergenic 25.0%
! TGTTGAAATTGAAAAAATGG+TGG + chr5_4:47195519-47195538 Msa0854570:CDS 25.0%
! GTTGAAATTGAAAAAATGGT+GGG + chr5_4:47195520-47195539 Msa0854570:CDS 25.0%
!! AAATTGTGATTGGTTATTGT+AGG - chr5_4:47195822-47195841 None:intergenic 25.0%
! TACAATAACCAATCACAATT+TGG + chr5_4:47195821-47195840 Msa0854570:three_prime_UTR 25.0%
!!! ACGGATTAGGTTTTTAATTT+TGG + chr5_4:47195919-47195938 Msa0854570:three_prime_UTR 25.0%
!!! GGTTTTTAATTTTGGATTCA+TGG + chr5_4:47195927-47195946 Msa0854570:three_prime_UTR 25.0%
!! TTTTGGATTCATGGTTATTT+TGG + chr5_4:47195936-47195955 Msa0854570:three_prime_UTR 25.0%
!!! TTTGGATTCATGGTTATTTT+GGG + chr5_4:47195937-47195956 Msa0854570:three_prime_UTR 25.0%
! AATAATGATCAAAACAGTGA+CGG + chr5_4:47196079-47196098 Msa0854570:three_prime_UTR 25.0%
! AATCACACATTCGTTATAAT+GGG + chr5_4:47194641-47194660 Msa0854570:intron 25.0%
! TGAGTCAATTATATACAAAC+TGG - chr5_4:47194816-47194835 None:intergenic 25.0%
! ACAAAAACAGAATTCATATG+TGG - chr5_4:47195035-47195054 None:intergenic 25.0%
! TATATGAGAGATGTAAAACT+GGG - chr5_4:47195204-47195223 None:intergenic 25.0%
! TTATATGAGAGATGTAAAAC+TGG - chr5_4:47195205-47195224 None:intergenic 25.0%
!!! GGGGATATTTTTTCAAATTT+TGG - chr5_4:47195323-47195342 None:intergenic 25.0%
! TAATAATAAAGTTGTCAGAG+TGG - chr5_4:47195472-47195491 None:intergenic 25.0%
! TCCTGTTGAAATTGAAAAAA+TGG + chr5_4:47195516-47195535 Msa0854570:CDS 25.0%
!!! ACCATTTTTTCAATTTCAAC+AGG - chr5_4:47195520-47195539 None:intergenic 25.0%
! TGTTGAAATTGAAAAAATGG+TGG + chr5_4:47195519-47195538 Msa0854570:CDS 25.0%
! GTTGAAATTGAAAAAATGGT+GGG + chr5_4:47195520-47195539 Msa0854570:CDS 25.0%
!! AAATTGTGATTGGTTATTGT+AGG - chr5_4:47195822-47195841 None:intergenic 25.0%
! TACAATAACCAATCACAATT+TGG + chr5_4:47195821-47195840 Msa0854570:three_prime_UTR 25.0%
!!! ACGGATTAGGTTTTTAATTT+TGG + chr5_4:47195919-47195938 Msa0854570:three_prime_UTR 25.0%
!!! GGTTTTTAATTTTGGATTCA+TGG + chr5_4:47195927-47195946 Msa0854570:three_prime_UTR 25.0%
!! TTTTGGATTCATGGTTATTT+TGG + chr5_4:47195936-47195955 Msa0854570:three_prime_UTR 25.0%
!!! TTTGGATTCATGGTTATTTT+GGG + chr5_4:47195937-47195956 Msa0854570:three_prime_UTR 25.0%
! AATAATGATCAAAACAGTGA+CGG + chr5_4:47196079-47196098 Msa0854570:three_prime_UTR 25.0%
TGTAAGCTTTACGTCATTTA+TGG - chr5_4:47194125-47194144 None:intergenic 30.0%
TTGATTGCTTCCATTAAAGA+TGG + chr5_4:47194163-47194182 Msa0854570:CDS 30.0%
AGTTTCATGATGAGACTATA+TGG + chr5_4:47194549-47194568 Msa0854570:intron 30.0%
TTGTCTCCATGAATTTGAAA+AGG + chr5_4:47194612-47194631 Msa0854570:intron 30.0%
TGTCTCCATGAATTTGAAAA+GGG + chr5_4:47194613-47194632 Msa0854570:intron 30.0%
! GTTTTCCCTTTTCAAATTCA+TGG - chr5_4:47194621-47194640 None:intergenic 30.0%
CAATCACACATTCGTTATAA+TGG + chr5_4:47194640-47194659 Msa0854570:intron 30.0%
CAAGGAAATCATAGAAAAGA+AGG + chr5_4:47194744-47194763 Msa0854570:CDS 30.0%
AATCATAGAAAAGAAGGACT+TGG + chr5_4:47194750-47194769 Msa0854570:CDS 30.0%
CTGAGAAGAATCAAACAATT+TGG - chr5_4:47195059-47195078 None:intergenic 30.0%
GATTTCCAATGATGACTTAA+GGG - chr5_4:47195098-47195117 None:intergenic 30.0%
TGATTTCCAATGATGACTTA+AGG - chr5_4:47195099-47195118 None:intergenic 30.0%
AGCTGATCCAGATAAAATTA+CGG - chr5_4:47195130-47195149 None:intergenic 30.0%
TGAATACAACAGAAGTAGTA+GGG - chr5_4:47195179-47195198 None:intergenic 30.0%
TTGAATACAACAGAAGTAGT+AGG - chr5_4:47195180-47195199 None:intergenic 30.0%
ATTAACATTTGTCCAAATGC+AGG + chr5_4:47195692-47195711 Msa0854570:intron 30.0%
TCTACTTAACAAGATTCTCT+TGG + chr5_4:47195749-47195768 Msa0854570:CDS 30.0%
CAGAAATCTGGAAAATTGAA+AGG + chr5_4:47195851-47195870 Msa0854570:three_prime_UTR 30.0%
TCAAAAGAAAACTACGGATT+AGG + chr5_4:47195906-47195925 Msa0854570:three_prime_UTR 30.0%
TGTAAGCTTTACGTCATTTA+TGG - chr5_4:47194125-47194144 None:intergenic 30.0%
TTGATTGCTTCCATTAAAGA+TGG + chr5_4:47194163-47194182 Msa0854570:CDS 30.0%
AGTTTCATGATGAGACTATA+TGG + chr5_4:47194549-47194568 Msa0854570:intron 30.0%
TTGTCTCCATGAATTTGAAA+AGG + chr5_4:47194612-47194631 Msa0854570:intron 30.0%
TGTCTCCATGAATTTGAAAA+GGG + chr5_4:47194613-47194632 Msa0854570:intron 30.0%
! GTTTTCCCTTTTCAAATTCA+TGG - chr5_4:47194621-47194640 None:intergenic 30.0%
CAATCACACATTCGTTATAA+TGG + chr5_4:47194640-47194659 Msa0854570:intron 30.0%
CAAGGAAATCATAGAAAAGA+AGG + chr5_4:47194744-47194763 Msa0854570:CDS 30.0%
AATCATAGAAAAGAAGGACT+TGG + chr5_4:47194750-47194769 Msa0854570:CDS 30.0%
CTGAGAAGAATCAAACAATT+TGG - chr5_4:47195059-47195078 None:intergenic 30.0%
GATTTCCAATGATGACTTAA+GGG - chr5_4:47195098-47195117 None:intergenic 30.0%
TGATTTCCAATGATGACTTA+AGG - chr5_4:47195099-47195118 None:intergenic 30.0%
AGCTGATCCAGATAAAATTA+CGG - chr5_4:47195130-47195149 None:intergenic 30.0%
TGAATACAACAGAAGTAGTA+GGG - chr5_4:47195179-47195198 None:intergenic 30.0%
TTGAATACAACAGAAGTAGT+AGG - chr5_4:47195180-47195199 None:intergenic 30.0%
ATTAACATTTGTCCAAATGC+AGG + chr5_4:47195692-47195711 Msa0854570:intron 30.0%
TCTACTTAACAAGATTCTCT+TGG + chr5_4:47195749-47195768 Msa0854570:CDS 30.0%
CAGAAATCTGGAAAATTGAA+AGG + chr5_4:47195851-47195870 Msa0854570:three_prime_UTR 30.0%
TCAAAAGAAAACTACGGATT+AGG + chr5_4:47195906-47195925 Msa0854570:three_prime_UTR 30.0%
! TTTTGATGCTACTCTTGCAA+AGG + chr5_4:47194027-47194046 Msa0854570:five_prime_UTR 35.0%
TTTGATGCTACTCTTGCAAA+GGG + chr5_4:47194028-47194047 Msa0854570:five_prime_UTR 35.0%
AATGTCACTCATTATCCAGT+TGG - chr5_4:47194074-47194093 None:intergenic 35.0%
ACTGATGGTTCCATCTTTAA+TGG - chr5_4:47194176-47194195 None:intergenic 35.0%
ATTAAAGATGGAACCATCAG+TGG + chr5_4:47194175-47194194 Msa0854570:CDS 35.0%
TTCCAGACTTAAATACTGTG+TGG + chr5_4:47194312-47194331 Msa0854570:intron 35.0%
TTCCACACAGTATTTAAGTC+TGG - chr5_4:47194317-47194336 None:intergenic 35.0%
! TGTTTGTGTTTGTTGACCAA+TGG + chr5_4:47194345-47194364 Msa0854570:intron 35.0%
! GTTTGTGTTTGTTGACCAAT+GGG + chr5_4:47194346-47194365 Msa0854570:intron 35.0%
GACCTGTAATGTCTGTTTAT+CGG + chr5_4:47194389-47194408 Msa0854570:intron 35.0%
ACCTGTAATGTCTGTTTATC+GGG + chr5_4:47194390-47194409 Msa0854570:intron 35.0%
ATGTTAGTTACACCAATGCT+CGG + chr5_4:47194908-47194927 Msa0854570:intron 35.0%
CTTAACAAAATGAGGTAGGA+AGG - chr5_4:47194943-47194962 None:intergenic 35.0%
GTGTCTTAACAAAATGAGGT+AGG - chr5_4:47194947-47194966 None:intergenic 35.0%
! TAGGGTGTCTTAACAAAATG+AGG - chr5_4:47194951-47194970 None:intergenic 35.0%
ATGCGCAATGATTAGTAGTA+GGG - chr5_4:47194969-47194988 None:intergenic 35.0%
AATGCGCAATGATTAGTAGT+AGG - chr5_4:47194970-47194989 None:intergenic 35.0%
AAACAGAATTCATATGTGGC+AGG - chr5_4:47195031-47195050 None:intergenic 35.0%
! GAATAGCCCGTAATTTTATC+TGG + chr5_4:47195120-47195139 Msa0854570:intron 35.0%
GCTGATCCAGATAAAATTAC+GGG - chr5_4:47195129-47195148 None:intergenic 35.0%
ATTGCTGTGCAAGAAAAAGT+TGG + chr5_4:47195237-47195256 Msa0854570:intron 35.0%
TTGCTGTGCAAGAAAAAGTT+GGG + chr5_4:47195238-47195257 Msa0854570:intron 35.0%
ATTCTGAGTGGAAGAGAAAT+GGG - chr5_4:47195293-47195312 None:intergenic 35.0%
TATGAATGGCTAGGTAGTTT+GGG - chr5_4:47195345-47195364 None:intergenic 35.0%
ATATGAATGGCTAGGTAGTT+TGG - chr5_4:47195346-47195365 None:intergenic 35.0%
TTGTTTAGGGAGGATATGAA+TGG - chr5_4:47195359-47195378 None:intergenic 35.0%
TCAGAGTGGAAATTACCAAA+TGG - chr5_4:47195458-47195477 None:intergenic 35.0%
!!! AAACTCCAAGGTTTTTTTGC+TGG + chr5_4:47195598-47195617 Msa0854570:CDS 35.0%
! TTTTCCCCCTTTTATTGTCA+CGG + chr5_4:47195665-47195684 Msa0854570:intron 35.0%
ATGAGACCGTGACAATAAAA+GGG - chr5_4:47195674-47195693 None:intergenic 35.0%
AATGAGACCGTGACAATAAA+AGG - chr5_4:47195675-47195694 None:intergenic 35.0%
GAATCTTGTTAAGTAGACCT+GGG - chr5_4:47195746-47195765 None:intergenic 35.0%
AGAATCTTGTTAAGTAGACC+TGG - chr5_4:47195747-47195766 None:intergenic 35.0%
! TTTTGATGCTACTCTTGCAA+AGG + chr5_4:47194027-47194046 Msa0854570:five_prime_UTR 35.0%
TTTGATGCTACTCTTGCAAA+GGG + chr5_4:47194028-47194047 Msa0854570:five_prime_UTR 35.0%
AATGTCACTCATTATCCAGT+TGG - chr5_4:47194074-47194093 None:intergenic 35.0%
ACTGATGGTTCCATCTTTAA+TGG - chr5_4:47194176-47194195 None:intergenic 35.0%
ATTAAAGATGGAACCATCAG+TGG + chr5_4:47194175-47194194 Msa0854570:CDS 35.0%
TTCCAGACTTAAATACTGTG+TGG + chr5_4:47194312-47194331 Msa0854570:intron 35.0%
TTCCACACAGTATTTAAGTC+TGG - chr5_4:47194317-47194336 None:intergenic 35.0%
! TGTTTGTGTTTGTTGACCAA+TGG + chr5_4:47194345-47194364 Msa0854570:intron 35.0%
! GTTTGTGTTTGTTGACCAAT+GGG + chr5_4:47194346-47194365 Msa0854570:intron 35.0%
GACCTGTAATGTCTGTTTAT+CGG + chr5_4:47194389-47194408 Msa0854570:intron 35.0%
ACCTGTAATGTCTGTTTATC+GGG + chr5_4:47194390-47194409 Msa0854570:intron 35.0%
ATGTTAGTTACACCAATGCT+CGG + chr5_4:47194908-47194927 Msa0854570:intron 35.0%
CTTAACAAAATGAGGTAGGA+AGG - chr5_4:47194943-47194962 None:intergenic 35.0%
GTGTCTTAACAAAATGAGGT+AGG - chr5_4:47194947-47194966 None:intergenic 35.0%
! TAGGGTGTCTTAACAAAATG+AGG - chr5_4:47194951-47194970 None:intergenic 35.0%
ATGCGCAATGATTAGTAGTA+GGG - chr5_4:47194969-47194988 None:intergenic 35.0%
AATGCGCAATGATTAGTAGT+AGG - chr5_4:47194970-47194989 None:intergenic 35.0%
AAACAGAATTCATATGTGGC+AGG - chr5_4:47195031-47195050 None:intergenic 35.0%
! GAATAGCCCGTAATTTTATC+TGG + chr5_4:47195120-47195139 Msa0854570:intron 35.0%
GCTGATCCAGATAAAATTAC+GGG - chr5_4:47195129-47195148 None:intergenic 35.0%
ATTGCTGTGCAAGAAAAAGT+TGG + chr5_4:47195237-47195256 Msa0854570:intron 35.0%
TTGCTGTGCAAGAAAAAGTT+GGG + chr5_4:47195238-47195257 Msa0854570:intron 35.0%
ATTCTGAGTGGAAGAGAAAT+GGG - chr5_4:47195293-47195312 None:intergenic 35.0%
TATGAATGGCTAGGTAGTTT+GGG - chr5_4:47195345-47195364 None:intergenic 35.0%
ATATGAATGGCTAGGTAGTT+TGG - chr5_4:47195346-47195365 None:intergenic 35.0%
TTGTTTAGGGAGGATATGAA+TGG - chr5_4:47195359-47195378 None:intergenic 35.0%
TCAGAGTGGAAATTACCAAA+TGG - chr5_4:47195458-47195477 None:intergenic 35.0%
!!! AAACTCCAAGGTTTTTTTGC+TGG + chr5_4:47195598-47195617 Msa0854570:CDS 35.0%
! TTTTCCCCCTTTTATTGTCA+CGG + chr5_4:47195665-47195684 Msa0854570:intron 35.0%
ATGAGACCGTGACAATAAAA+GGG - chr5_4:47195674-47195693 None:intergenic 35.0%
AATGAGACCGTGACAATAAA+AGG - chr5_4:47195675-47195694 None:intergenic 35.0%
GAATCTTGTTAAGTAGACCT+GGG - chr5_4:47195746-47195765 None:intergenic 35.0%
AGAATCTTGTTAAGTAGACC+TGG - chr5_4:47195747-47195766 None:intergenic 35.0%
TGGATAATGAGTGACATTGC+TGG + chr5_4:47194076-47194095 Msa0854570:exon 40.0%
AAAGCTTACACCTGAAGAGT+TGG + chr5_4:47194135-47194154 Msa0854570:CDS 40.0%
TTTGCTTCGGCATTAATGAG+TGG + chr5_4:47194219-47194238 Msa0854570:intron 40.0%
GATGAGACTATATGGCTGTT+AGG + chr5_4:47194557-47194576 Msa0854570:intron 40.0%
ACTATTTGAGCTGTTAGCCA+AGG + chr5_4:47194711-47194730 Msa0854570:CDS 40.0%
CTATTTGAGCTGTTAGCCAA+GGG + chr5_4:47194712-47194731 Msa0854570:CDS 40.0%
! AGAAAAGAAGGACTTGGTTC+AGG + chr5_4:47194756-47194775 Msa0854570:CDS 40.0%
AACAAAATGAGGTAGGAAGG+AGG - chr5_4:47194940-47194959 None:intergenic 40.0%
GACTTAAGGGAAAGGTTCTT+TGG - chr5_4:47195085-47195104 None:intergenic 40.0%
CCAATGATGACTTAAGGGAA+AGG - chr5_4:47195093-47195112 None:intergenic 40.0%
CCTTTCCCTTAAGTCATCAT+TGG + chr5_4:47195090-47195109 Msa0854570:intron 40.0%
TAGGGAATCATTTCAGCAGA+GGG - chr5_4:47195161-47195180 None:intergenic 40.0%
AGTGGAGGTTAGACTTAAAG+AGG - chr5_4:47195265-47195284 None:intergenic 40.0%
GAAGAGAAATGGGAAAACAG+TGG - chr5_4:47195283-47195302 None:intergenic 40.0%
GATTCTGAGTGGAAGAGAAA+TGG - chr5_4:47195294-47195313 None:intergenic 40.0%
TTTGGTGAACAGATTCTGAG+TGG - chr5_4:47195305-47195324 None:intergenic 40.0%
ATGAATGGCTAGGTAGTTTG+GGG - chr5_4:47195344-47195363 None:intergenic 40.0%
! GGAGGGATTGATGTTGTTTA+GGG - chr5_4:47195372-47195391 None:intergenic 40.0%
! AGGAGGGATTGATGTTGTTT+AGG - chr5_4:47195373-47195392 None:intergenic 40.0%
! CAGTTTTACAGATTTGGAGG+TGG - chr5_4:47195428-47195447 None:intergenic 40.0%
! CTGCAGTTTTACAGATTTGG+AGG - chr5_4:47195431-47195450 None:intergenic 40.0%
! GTGCTGCAGTTTTACAGATT+TGG - chr5_4:47195434-47195453 None:intergenic 40.0%
TAAAACTGCAGCACACCATT+TGG + chr5_4:47195440-47195459 Msa0854570:intron 40.0%
TGAGACCGTGACAATAAAAG+GGG - chr5_4:47195673-47195692 None:intergenic 40.0%
TGTCCAAATGCAGGTAATGA+AGG + chr5_4:47195701-47195720 Msa0854570:intron 40.0%
ATGCCTTCATTACCTGCATT+TGG - chr5_4:47195707-47195726 None:intergenic 40.0%
!! CAGGTAATGAAGGCATCTAA+AGG + chr5_4:47195711-47195730 Msa0854570:intron 40.0%
!! AATGAAGGCATCTAAAGGCA+AGG + chr5_4:47195716-47195735 Msa0854570:CDS 40.0%
GCGATTCTCCAAATTGTGAT+TGG - chr5_4:47195832-47195851 None:intergenic 40.0%
TTTGGAGAATCGCAGAAATC+TGG + chr5_4:47195839-47195858 Msa0854570:three_prime_UTR 40.0%
!!! TTTTCTTTCTAGCTCCACGT+GGG - chr5_4:47196014-47196033 None:intergenic 40.0%
TCACTTAGCTGAAGCTAACA+TGG - chr5_4:47196054-47196073 None:intergenic 40.0%
! CAGTGACGGAAAATATCTAG+AGG + chr5_4:47196093-47196112 Msa0854570:three_prime_UTR 40.0%
TGGATAATGAGTGACATTGC+TGG + chr5_4:47194076-47194095 Msa0854570:exon 40.0%
AAAGCTTACACCTGAAGAGT+TGG + chr5_4:47194135-47194154 Msa0854570:CDS 40.0%
TTTGCTTCGGCATTAATGAG+TGG + chr5_4:47194219-47194238 Msa0854570:intron 40.0%
GATGAGACTATATGGCTGTT+AGG + chr5_4:47194557-47194576 Msa0854570:intron 40.0%
ACTATTTGAGCTGTTAGCCA+AGG + chr5_4:47194711-47194730 Msa0854570:CDS 40.0%
CTATTTGAGCTGTTAGCCAA+GGG + chr5_4:47194712-47194731 Msa0854570:CDS 40.0%
! AGAAAAGAAGGACTTGGTTC+AGG + chr5_4:47194756-47194775 Msa0854570:CDS 40.0%
AACAAAATGAGGTAGGAAGG+AGG - chr5_4:47194940-47194959 None:intergenic 40.0%
GACTTAAGGGAAAGGTTCTT+TGG - chr5_4:47195085-47195104 None:intergenic 40.0%
CCAATGATGACTTAAGGGAA+AGG - chr5_4:47195093-47195112 None:intergenic 40.0%
CCTTTCCCTTAAGTCATCAT+TGG + chr5_4:47195090-47195109 Msa0854570:intron 40.0%
TAGGGAATCATTTCAGCAGA+GGG - chr5_4:47195161-47195180 None:intergenic 40.0%
AGTGGAGGTTAGACTTAAAG+AGG - chr5_4:47195265-47195284 None:intergenic 40.0%
GAAGAGAAATGGGAAAACAG+TGG - chr5_4:47195283-47195302 None:intergenic 40.0%
GATTCTGAGTGGAAGAGAAA+TGG - chr5_4:47195294-47195313 None:intergenic 40.0%
TTTGGTGAACAGATTCTGAG+TGG - chr5_4:47195305-47195324 None:intergenic 40.0%
ATGAATGGCTAGGTAGTTTG+GGG - chr5_4:47195344-47195363 None:intergenic 40.0%
! GGAGGGATTGATGTTGTTTA+GGG - chr5_4:47195372-47195391 None:intergenic 40.0%
! AGGAGGGATTGATGTTGTTT+AGG - chr5_4:47195373-47195392 None:intergenic 40.0%
! CAGTTTTACAGATTTGGAGG+TGG - chr5_4:47195428-47195447 None:intergenic 40.0%
! CTGCAGTTTTACAGATTTGG+AGG - chr5_4:47195431-47195450 None:intergenic 40.0%
! GTGCTGCAGTTTTACAGATT+TGG - chr5_4:47195434-47195453 None:intergenic 40.0%
TAAAACTGCAGCACACCATT+TGG + chr5_4:47195440-47195459 Msa0854570:intron 40.0%
TGAGACCGTGACAATAAAAG+GGG - chr5_4:47195673-47195692 None:intergenic 40.0%
TGTCCAAATGCAGGTAATGA+AGG + chr5_4:47195701-47195720 Msa0854570:intron 40.0%
ATGCCTTCATTACCTGCATT+TGG - chr5_4:47195707-47195726 None:intergenic 40.0%
!! CAGGTAATGAAGGCATCTAA+AGG + chr5_4:47195711-47195730 Msa0854570:intron 40.0%
!! AATGAAGGCATCTAAAGGCA+AGG + chr5_4:47195716-47195735 Msa0854570:CDS 40.0%
GCGATTCTCCAAATTGTGAT+TGG - chr5_4:47195832-47195851 None:intergenic 40.0%
TTTGGAGAATCGCAGAAATC+TGG + chr5_4:47195839-47195858 Msa0854570:three_prime_UTR 40.0%
!!! TTTTCTTTCTAGCTCCACGT+GGG - chr5_4:47196014-47196033 None:intergenic 40.0%
TCACTTAGCTGAAGCTAACA+TGG - chr5_4:47196054-47196073 None:intergenic 40.0%
! CAGTGACGGAAAATATCTAG+AGG + chr5_4:47196093-47196112 Msa0854570:three_prime_UTR 40.0%
ATGCAAAGCTAGTTGCCAAC+TGG + chr5_4:47194056-47194075 Msa0854570:five_prime_UTR 45.0%
ATCAACTCAGCCAACTCTTC+AGG - chr5_4:47194148-47194167 None:intergenic 45.0%
! GGAAGGAGGTATGTTTGCTT+CGG + chr5_4:47194206-47194225 Msa0854570:intron 45.0%
GCCCGATAAACAGACATTAC+AGG - chr5_4:47194394-47194413 None:intergenic 45.0%
GTAGGGAATCATTTCAGCAG+AGG - chr5_4:47195162-47195181 None:intergenic 45.0%
GAGAAATGGGAAAACAGTGG+AGG - chr5_4:47195280-47195299 None:intergenic 45.0%
TGAATGGCTAGGTAGTTTGG+GGG - chr5_4:47195343-47195362 None:intergenic 45.0%
TAGGGAGGATATGAATGGCT+AGG - chr5_4:47195354-47195373 None:intergenic 45.0%
! GGGATTGATGTTGTTTAGGG+AGG - chr5_4:47195369-47195388 None:intergenic 45.0%
GATCGCAGATAATCCGAAAC+AGG + chr5_4:47195549-47195568 Msa0854570:CDS 45.0%
CGGTATTGCTCAACCTGTTT+CGG - chr5_4:47195565-47195584 None:intergenic 45.0%
! AAACAGGTTGAGCAATACCG+AGG + chr5_4:47195565-47195584 Msa0854570:CDS 45.0%
!!! GGAGTTTAGTTTTGCCTCCT+CGG - chr5_4:47195585-47195604 None:intergenic 45.0%
GGAGGCAAAACTAAACTCCA+AGG + chr5_4:47195586-47195605 Msa0854570:CDS 45.0%
CAGCTCTACAAGTTCATACC+TGG - chr5_4:47195624-47195643 None:intergenic 45.0%
CAGGTATGAACTTGTAGAGC+TGG + chr5_4:47195622-47195641 Msa0854570:intron 45.0%
GAGACCGTGACAATAAAAGG+GGG - chr5_4:47195672-47195691 None:intergenic 45.0%
CATGTACAGAATTACCCACG+TGG + chr5_4:47195997-47196016 Msa0854570:three_prime_UTR 45.0%
!!! CTTTTCTTTCTAGCTCCACG+TGG - chr5_4:47196015-47196034 None:intergenic 45.0%
ATGCAAAGCTAGTTGCCAAC+TGG + chr5_4:47194056-47194075 Msa0854570:five_prime_UTR 45.0%
ATCAACTCAGCCAACTCTTC+AGG - chr5_4:47194148-47194167 None:intergenic 45.0%
! GGAAGGAGGTATGTTTGCTT+CGG + chr5_4:47194206-47194225 Msa0854570:intron 45.0%
GCCCGATAAACAGACATTAC+AGG - chr5_4:47194394-47194413 None:intergenic 45.0%
GTAGGGAATCATTTCAGCAG+AGG - chr5_4:47195162-47195181 None:intergenic 45.0%
GAGAAATGGGAAAACAGTGG+AGG - chr5_4:47195280-47195299 None:intergenic 45.0%
TGAATGGCTAGGTAGTTTGG+GGG - chr5_4:47195343-47195362 None:intergenic 45.0%
TAGGGAGGATATGAATGGCT+AGG - chr5_4:47195354-47195373 None:intergenic 45.0%
! GGGATTGATGTTGTTTAGGG+AGG - chr5_4:47195369-47195388 None:intergenic 45.0%
GATCGCAGATAATCCGAAAC+AGG + chr5_4:47195549-47195568 Msa0854570:CDS 45.0%
CGGTATTGCTCAACCTGTTT+CGG - chr5_4:47195565-47195584 None:intergenic 45.0%
! AAACAGGTTGAGCAATACCG+AGG + chr5_4:47195565-47195584 Msa0854570:CDS 45.0%
!!! GGAGTTTAGTTTTGCCTCCT+CGG - chr5_4:47195585-47195604 None:intergenic 45.0%
GGAGGCAAAACTAAACTCCA+AGG + chr5_4:47195586-47195605 Msa0854570:CDS 45.0%
CAGCTCTACAAGTTCATACC+TGG - chr5_4:47195624-47195643 None:intergenic 45.0%
CAGGTATGAACTTGTAGAGC+TGG + chr5_4:47195622-47195641 Msa0854570:intron 45.0%
GAGACCGTGACAATAAAAGG+GGG - chr5_4:47195672-47195691 None:intergenic 45.0%
CATGTACAGAATTACCCACG+TGG + chr5_4:47195997-47196016 Msa0854570:three_prime_UTR 45.0%
!!! CTTTTCTTTCTAGCTCCACG+TGG - chr5_4:47196015-47196034 None:intergenic 45.0%
!!! TATTTATTTTTATTTGATTT+AGG - chr5_4:47195393-47195412 None:intergenic 5.0%
!!! TGAATTTAAATTTTTTAAAA+AGG - chr5_4:47195979-47195998 None:intergenic 5.0%
!!! TATTTATTTTTATTTGATTT+AGG - chr5_4:47195393-47195412 None:intergenic 5.0%
!!! TGAATTTAAATTTTTTAAAA+AGG - chr5_4:47195979-47195998 None:intergenic 5.0%
GGAACCATCAGTGGCAAGAT+CGG + chr5_4:47194184-47194203 Msa0854570:CDS 50.0%
GAACCATCAGTGGCAAGATC+GGG + chr5_4:47194185-47194204 Msa0854570:CDS 50.0%
TTTGAGCTGTTAGCCAAGGG+TGG + chr5_4:47194715-47194734 Msa0854570:CDS 50.0%
TTCCTTGACACTTCCACCCT+TGG - chr5_4:47194731-47194750 None:intergenic 50.0%
AGGAGGAATTCACCGAGCAT+TGG - chr5_4:47194923-47194942 None:intergenic 50.0%
TATTCCGCTCCCCTCATATG+TGG + chr5_4:47195002-47195021 Msa0854570:intron 50.0%
GAATGGCTAGGTAGTTTGGG+GGG - chr5_4:47195342-47195361 None:intergenic 50.0%
CCTGGCCAGCAAAAAAACCT+TGG - chr5_4:47195606-47195625 None:intergenic 50.0%
!!! CCAAGGTTTTTTTGCTGGCC+AGG + chr5_4:47195603-47195622 Msa0854570:CDS 50.0%
TCTAAAGGCAAGGCAAACCC+AGG + chr5_4:47195726-47195745 Msa0854570:CDS 50.0%
GGAACCATCAGTGGCAAGAT+CGG + chr5_4:47194184-47194203 Msa0854570:CDS 50.0%
GAACCATCAGTGGCAAGATC+GGG + chr5_4:47194185-47194204 Msa0854570:CDS 50.0%
TTTGAGCTGTTAGCCAAGGG+TGG + chr5_4:47194715-47194734 Msa0854570:CDS 50.0%
TTCCTTGACACTTCCACCCT+TGG - chr5_4:47194731-47194750 None:intergenic 50.0%
AGGAGGAATTCACCGAGCAT+TGG - chr5_4:47194923-47194942 None:intergenic 50.0%
TATTCCGCTCCCCTCATATG+TGG + chr5_4:47195002-47195021 Msa0854570:intron 50.0%
GAATGGCTAGGTAGTTTGGG+GGG - chr5_4:47195342-47195361 None:intergenic 50.0%
CCTGGCCAGCAAAAAAACCT+TGG - chr5_4:47195606-47195625 None:intergenic 50.0%
!!! CCAAGGTTTTTTTGCTGGCC+AGG + chr5_4:47195603-47195622 Msa0854570:CDS 50.0%
TCTAAAGGCAAGGCAAACCC+AGG + chr5_4:47195726-47195745 Msa0854570:CDS 50.0%
CTTCCCGATCTTGCCACTGA+TGG - chr5_4:47194191-47194210 None:intergenic 55.0%
CATCAGTGGCAAGATCGGGA+AGG + chr5_4:47194189-47194208 Msa0854570:CDS 55.0%
!! AGCCAAGGGTGGAAGTGTCA+AGG + chr5_4:47194726-47194745 Msa0854570:CDS 55.0%
TGGCAGGCTGCCACATATGA+GGG - chr5_4:47195015-47195034 None:intergenic 55.0%
! CAGGTTGAGCAATACCGAGG+AGG + chr5_4:47195568-47195587 Msa0854570:CDS 55.0%
CTTCCCGATCTTGCCACTGA+TGG - chr5_4:47194191-47194210 None:intergenic 55.0%
CATCAGTGGCAAGATCGGGA+AGG + chr5_4:47194189-47194208 Msa0854570:CDS 55.0%
!! AGCCAAGGGTGGAAGTGTCA+AGG + chr5_4:47194726-47194745 Msa0854570:CDS 55.0%
TGGCAGGCTGCCACATATGA+GGG - chr5_4:47195015-47195034 None:intergenic 55.0%
! CAGGTTGAGCAATACCGAGG+AGG + chr5_4:47195568-47195587 Msa0854570:CDS 55.0%
CAGTGGCAAGATCGGGAAGG+AGG + chr5_4:47194192-47194211 Msa0854570:CDS 60.0%
GCTGCCACATATGAGGGGAG+CGG - chr5_4:47195009-47195028 None:intergenic 60.0%
GGCAGGCTGCCACATATGAG+GGG - chr5_4:47195014-47195033 None:intergenic 60.0%
GTGGCAGGCTGCCACATATG+AGG - chr5_4:47195016-47195035 None:intergenic 60.0%
CAGTGGCAAGATCGGGAAGG+AGG + chr5_4:47194192-47194211 Msa0854570:CDS 60.0%
GCTGCCACATATGAGGGGAG+CGG - chr5_4:47195009-47195028 None:intergenic 60.0%
GGCAGGCTGCCACATATGAG+GGG - chr5_4:47195014-47195033 None:intergenic 60.0%
GTGGCAGGCTGCCACATATG+AGG - chr5_4:47195016-47195035 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 47194014 47196183 47194014 ID=Msa0854570;Name=Msa0854570
chr5_4 mRNA 47194014 47196183 47194014 ID=Msa0854570-mRNA-1;Parent=Msa0854570;Name=Msa0854570-mRNA-1;_AED=0.00;_eAED=0.00;_QI=68|1|1|1|1|1|4|395|130
chr5_4 exon 47194014 47194213 47194014 ID=Msa0854570-mRNA-1:exon:14922;Parent=Msa0854570-mRNA-1
chr5_4 exon 47194709 47194777 47194709 ID=Msa0854570-mRNA-1:exon:14923;Parent=Msa0854570-mRNA-1
chr5_4 exon 47195508 47195624 47195508 ID=Msa0854570-mRNA-1:exon:14924;Parent=Msa0854570-mRNA-1
chr5_4 exon 47195714 47196183 47195714 ID=Msa0854570-mRNA-1:exon:14925;Parent=Msa0854570-mRNA-1
chr5_4 five_prime_UTR 47194014 47194081 47194014 ID=Msa0854570-mRNA-1:five_prime_utr;Parent=Msa0854570-mRNA-1
chr5_4 CDS 47194082 47194213 47194082 ID=Msa0854570-mRNA-1:cds;Parent=Msa0854570-mRNA-1
chr5_4 CDS 47194709 47194777 47194709 ID=Msa0854570-mRNA-1:cds;Parent=Msa0854570-mRNA-1
chr5_4 CDS 47195508 47195624 47195508 ID=Msa0854570-mRNA-1:cds;Parent=Msa0854570-mRNA-1
chr5_4 CDS 47195714 47195788 47195714 ID=Msa0854570-mRNA-1:cds;Parent=Msa0854570-mRNA-1
chr5_4 three_prime_UTR 47195789 47196183 47195789 ID=Msa0854570-mRNA-1:three_prime_utr;Parent=Msa0854570-mRNA-1
Gene Sequence

>Msa0854570

ATGAGTGACATTGCTGGCTTCATGAAAAACGAAAAGTTGACCATAAATGACGTAAAGCTTACACCTGAAGAGTTGGCTGAGTTGATTGCTTCCATTAAAGATGGAACCATCAGTGGCAAGATCGGGAAGGAGATACTATTTGAGCTGTTAGCCAAGGGTGGAAGTGTCAAGGAAATCATAGAAAAGAAGGACTTGGTTCAGATAACAGATCCTGTTGAAATTGAAAAAATGGTGGGCAAAGTGATCGCAGATAATCCGAAACAGGTTGAGCAATACCGAGGAGGCAAAACTAAACTCCAAGGTTTTTTTGCTGGCCAGGTAATGAAGGCATCTAAAGGCAAGGCAAACCCAGGTCTACTTAACAAGATTCTCTTGGATAAATTGAATTCATAA

Protein sequence

>Msa0854570

MSDIAGFMKNEKLTINDVKLTPEELAELIASIKDGTISGKIGKEILFELLAKGGSVKEIIEKKDLVQITDPVEIEKMVGKVIADNPKQVEQYRGGKTKLQGFFAGQVMKASKGKANPGLLNKILLDKLNS*