AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0955260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0955260 MtrunA17_Chr6g0471271 96.018 226 9 0 1 226 1 226 6.81e-162 446
Msa0955260 MtrunA17_Chr1g0197271 44.944 89 47 1 129 215 5 93 1.43e-21 85.5
Msa0955260 MtrunA17_Chr1g0188891 45.882 85 44 1 133 215 9 93 4.61e-21 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0955260 AT1G05190.1 75.664 226 52 1 1 226 1 223 6.71e-126 355
Msa0955260 AT2G18400.1 46.067 89 46 1 129 215 5 93 4.20e-23 90.1

Find 78 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATAACTTTACCGCGCTTTA+AGG 0.120045 6_3:+59159600 None:intergenic
GAAAAGAAACTTCAACTTAT+TGG 0.159385 6_3:-59160117 Msa0955260:CDS
CCCTTACCTTTGTAGGGTTC+TGG 0.218928 6_3:+59159907 None:intergenic
AAACAAGAGATAAATTTAAA+AGG 0.224923 6_3:+59159805 None:intergenic
ACCTTCACTTTGAGGCCTTC+AGG 0.263864 6_3:+59160015 None:intergenic
TTTGATACCCTTACCTTTGT+AGG 0.300119 6_3:+59159900 None:intergenic
ATCCAATGTAACTATCAAAA+TGG 0.303648 6_3:-59161842 Msa0955260:CDS
TTGCGGCTTCGATTAGAAAA+TGG 0.305439 6_3:-59159936 Msa0955260:CDS
TCAGGGATTGTCATCTTAAC+AGG 0.311247 6_3:+59160033 None:intergenic
ATACTGTGTGTATGGTAAAT+TGG 0.344992 6_3:+59163415 None:intergenic
CCTTCACTTTGAGGCCTTCA+GGG 0.346534 6_3:+59160016 None:intergenic
AGTGCTCCTGCTACTCATAT+TGG 0.350239 6_3:-59161928 Msa0955260:CDS
TTTACAAGTGAAAGGTCCTT+TGG 0.350575 6_3:-59161809 Msa0955260:CDS
TTTCATCTACCTTCACTTTG+AGG 0.365649 6_3:+59160007 None:intergenic
ACATTGGATGGAACGGGAAT+TGG 0.366524 6_3:+59161856 None:intergenic
AATGAAGTAGTCTTGAATCT+TGG 0.378916 6_3:-59160066 Msa0955260:CDS
AGGAGAAAGGAAGGAAAAGC+AGG 0.383827 6_3:-59159859 Msa0955260:CDS
ATAACTTTACCGCGCTTTAA+GGG 0.390705 6_3:+59159601 None:intergenic
AAACGGTAACTACTGTTTGT+TGG 0.403849 6_3:+59163446 None:intergenic
AACAAGAGATAAATTTAAAA+GGG 0.416609 6_3:+59159806 None:intergenic
ATAGTTACATTGGATGGAAC+GGG 0.422003 6_3:+59161850 None:intergenic
GGATATGACAAGTCTGAGAT+TGG 0.426355 6_3:-59159964 Msa0955260:CDS
ATATCCACTAACTGTGATTC+TGG 0.428194 6_3:+59159981 None:intergenic
TTACAAGTGAAAGGTCCTTT+GGG 0.428296 6_3:-59161808 Msa0955260:CDS
GGTTATCGTGCTATGGTAGA+AGG 0.428439 6_3:-59160090 Msa0955260:CDS
GTAAGGCAGTCGAAACTAGA+AGG 0.432413 6_3:-59161717 Msa0955260:CDS
TGGTTGGTTAAGCTGTTTGT+TGG 0.434443 6_3:+59163477 None:intergenic
CTTCAGTTATACTGTGTGTA+TGG 0.439130 6_3:+59163407 None:intergenic
AACACCAGAATCACAGTTAG+TGG 0.439924 6_3:-59159985 Msa0955260:CDS
GTCTGAGATTGGGCAGTTTG+CGG 0.442471 6_3:-59159953 Msa0955260:CDS
GTAAATTGGTAATGGTAAAA+CGG 0.451405 6_3:+59163429 None:intergenic
CTTGTAGATAGCAGTTGAGT+TGG 0.454010 6_3:+59159665 None:intergenic
TAGAAAGACTACCGAATGTA+AGG 0.454853 6_3:-59161899 Msa0955260:CDS
CTTACGGACAACATAGTGAT+TGG 0.462044 6_3:-59160156 Msa0955260:CDS
AATGTAAGGAATCACGGATT+GGG 0.463821 6_3:-59161885 Msa0955260:CDS
GTATAACTGAAGTAGATAAC+AGG 0.466983 6_3:-59163396 Msa0955260:five_prime_UTR
GAAGTTGTAAGGAGAAAGGA+AGG 0.473123 6_3:-59159868 Msa0955260:CDS
AGCTTGAGAGGCAAGAAGAA+GGG 0.473759 6_3:-59161753 Msa0955260:CDS
CTGAAGTAGATAACAGGATA+AGG 0.476991 6_3:-59163390 Msa0955260:five_prime_UTR
AATATGAAGATGAAGTTGTA+AGG 0.477736 6_3:-59159879 Msa0955260:CDS
TTGATACCCTTACCTTTGTA+GGG 0.482564 6_3:+59159901 None:intergenic
AATCCGTGATTCCTTACATT+CGG 0.484023 6_3:+59161888 None:intergenic
AAGAAACCAATATGAGTAGC+AGG 0.491439 6_3:+59161922 None:intergenic
ATAGTGATTGGAGTATCTAA+AGG 0.494629 6_3:-59160144 Msa0955260:CDS
AGATGAAGTTGTAAGGAGAA+AGG 0.496476 6_3:-59159872 Msa0955260:CDS
GAATGTAAGGAATCACGGAT+TGG 0.498607 6_3:-59161886 Msa0955260:CDS
TTACCTCTTCGTTTCAACTC+AGG 0.503507 6_3:-59163305 Msa0955260:intron
TGGTGTCGGTTATCGTGCTA+TGG 0.520430 6_3:-59160097 Msa0955260:CDS
AAGCTTGAGAGGCAAGAAGA+AGG 0.521087 6_3:-59161754 Msa0955260:CDS
TCCAGAACCCTACAAAGGTA+AGG 0.527022 6_3:-59159908 Msa0955260:CDS
AATGTAACTATCAAAATGGA+AGG 0.530387 6_3:-59161838 Msa0955260:CDS
CTCTCAAGCTTAACTTCTCG+AGG 0.534222 6_3:+59161766 None:intergenic
AAACTTCAACTTATTGGTGT+CGG 0.535328 6_3:-59160111 Msa0955260:CDS
AGCCTTGTGGCTTGTAACAA+TGG 0.539665 6_3:-59163337 Msa0955260:exon
GATATGACAAGTCTGAGATT+GGG 0.540917 6_3:-59159963 Msa0955260:CDS
TACAAGAACAATAATATGCA+AGG 0.543925 6_3:-59159648 Msa0955260:three_prime_UTR
GGAGAAAGGAAGGAAAAGCA+GGG 0.545189 6_3:-59159858 Msa0955260:CDS
GCTTGAGAGGCAAGAAGAAG+GGG 0.551668 6_3:-59161752 Msa0955260:CDS
GGGCAATATTTACAAGTGAA+AGG 0.553289 6_3:-59161817 Msa0955260:CDS
TGTGTATGGTAAATTGGTAA+TGG 0.553880 6_3:+59163421 None:intergenic
TTACCTTTGTAGGGTTCTGG+AGG 0.564618 6_3:+59159910 None:intergenic
GATAGTTACATTGGATGGAA+CGG 0.567426 6_3:+59161849 None:intergenic
CCCTGAAGGCCTCAAAGTGA+AGG 0.567766 6_3:-59160016 Msa0955260:CDS
GAACCTGAGTTGAAACGAAG+AGG 0.574279 6_3:+59163302 None:intergenic
CTCGAGAAGTTAAGCTTGAG+AGG 0.575979 6_3:-59161765 Msa0955260:CDS
CTACCGAATGTAAGGAATCA+CGG 0.576712 6_3:-59161891 Msa0955260:CDS
TAACTTTACCGCGCTTTAAG+GGG 0.582292 6_3:+59159602 None:intergenic
GAAGGGCAAATCAAATGCAC+GGG 0.584831 6_3:-59161699 Msa0955260:CDS
AGAAGGGCAAATCAAATGCA+CGG 0.586479 6_3:-59161700 Msa0955260:CDS
AACTTTACCGCGCTTTAAGG+GGG 0.590704 6_3:+59159603 None:intergenic
TAAGGCAGTCGAAACTAGAA+GGG 0.621043 6_3:-59161716 Msa0955260:CDS
ACAAGAACAATAATATGCAA+GGG 0.627371 6_3:-59159647 Msa0955260:three_prime_UTR
CCAGAACCCTACAAAGGTAA+GGG 0.628031 6_3:-59159907 Msa0955260:CDS
ATGTAACTATCAAAATGGAA+GGG 0.630990 6_3:-59161837 Msa0955260:CDS
GTTAAGATGACAATCCCTGA+AGG 0.655322 6_3:-59160030 Msa0955260:CDS
AGCCATTGTTACAAGCCACA+AGG 0.662400 6_3:+59163335 None:intergenic
GTTAACGAAAGTTCTCCCAA+AGG 0.680959 6_3:+59161793 None:intergenic
AGACCTCCAGAACCCTACAA+AGG 0.715455 6_3:-59159913 Msa0955260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTTATTTATATGATTAAAA+TGG + chr6_3:59159858-59159877 None:intergenic 10.0%
!!! TTTAAAATCATGATAATTTA+TGG - chr6_3:59162196-59162215 Msa0955260:intron 10.0%
!! TTAAAATCATGATAATTTAT+GGG - chr6_3:59162197-59162216 Msa0955260:intron 10.0%
!! ATCATATAAATAAGTTTCAT+CGG - chr6_3:59159863-59159882 Msa0955260:CDS 15.0%
!!! TTTTTCTTAAATTCTCAATT+AGG - chr6_3:59160077-59160096 Msa0955260:CDS 15.0%
!!! AAAGAAAATAACAATTGTTT+TGG - chr6_3:59160711-59160730 Msa0955260:intron 15.0%
!!! AAGAAAATAACAATTGTTTT+GGG - chr6_3:59160712-59160731 Msa0955260:intron 15.0%
!!! TATTGTTAGTTATTTTTCTT+TGG - chr6_3:59161914-59161933 Msa0955260:CDS 15.0%
!!! ATTGTTAGTTATTTTTCTTT+GGG - chr6_3:59161915-59161934 Msa0955260:CDS 15.0%
!! ATAACATTTGATTCATTTAT+TGG - chr6_3:59162086-59162105 Msa0955260:intron 15.0%
!! TAACATTTGATTCATTTATT+GGG - chr6_3:59162087-59162106 Msa0955260:intron 15.0%
!!! TTAGAATTTTGTATTTGATT+AGG - chr6_3:59162264-59162283 Msa0955260:intron 15.0%
!! AACAAGAGATAAATTTAAAA+GGG + chr6_3:59163239-59163258 None:intergenic 15.0%
!! AAACAAGAGATAAATTTAAA+AGG + chr6_3:59163240-59163259 None:intergenic 15.0%
!!! TTTATGTGTTCTAAGAAAAA+TGG + chr6_3:59159980-59159999 None:intergenic 20.0%
!! GTTATATAGTTCAAAATACT+GGG + chr6_3:59160022-59160041 None:intergenic 20.0%
!! AGTTATATAGTTCAAAATAC+TGG + chr6_3:59160023-59160042 None:intergenic 20.0%
!! AAATTCTCAATTAGGTAAAA+AGG - chr6_3:59160085-59160104 Msa0955260:CDS 20.0%
!! AATTCTCAATTAGGTAAAAA+GGG - chr6_3:59160086-59160105 Msa0955260:CDS 20.0%
!! TTTGACAAAATTCAATGAAA+TGG - chr6_3:59160207-59160226 Msa0955260:intron 20.0%
!!! TTTTGGCAAAAACTATATTT+TGG - chr6_3:59160620-59160639 Msa0955260:intron 20.0%
!!! AATTTTAAGTCATCTTTTGT+TGG - chr6_3:59161066-59161085 Msa0955260:intron 20.0%
!! AACATTTGATTCATTTATTG+GGG - chr6_3:59162088-59162107 Msa0955260:intron 20.0%
!!! TCATGATTTTAAAGAACTTA+GGG + chr6_3:59162189-59162208 None:intergenic 20.0%
!!! ATCATGATTTTAAAGAACTT+AGG + chr6_3:59162190-59162209 None:intergenic 20.0%
!!! GTCTATATTTTTGTATGTAT+GGG - chr6_3:59162723-59162742 Msa0955260:intron 20.0%
!!! TTGTGCAAATAAATGTTTTT+AGG - chr6_3:59162860-59162879 Msa0955260:intron 20.0%
!!! AAATATGAATTTCTTTTGCT+CGG + chr6_3:59163298-59163317 None:intergenic 20.0%
!! TTTGTTGGATTTTTATTGGT+TGG + chr6_3:59159584-59159603 None:intergenic 25.0%
!!! ACTGTTTGTTGGATTTTTAT+TGG + chr6_3:59159588-59159607 None:intergenic 25.0%
!!! GTAAATTGGTAATGGTAAAA+CGG + chr6_3:59159616-59159635 None:intergenic 25.0%
! TGGTAACTAAAACACAAAAT+GGG + chr6_3:59159960-59159979 None:intergenic 25.0%
! ATGGTAACTAAAACACAAAA+TGG + chr6_3:59159961-59159980 None:intergenic 25.0%
! AAAGGGTTATAATTATTTGC+TGG - chr6_3:59160103-59160122 Msa0955260:CDS 25.0%
! CATGAAGCAAAAATACTAAT+CGG - chr6_3:59160378-59160397 Msa0955260:intron 25.0%
! AGTAGTAAAACAGGTAATTA+AGG - chr6_3:59160538-59160557 Msa0955260:intron 25.0%
! TGAAATTATTCACGTAGAAT+TGG - chr6_3:59160562-59160581 Msa0955260:intron 25.0%
!! TATAGTTTTTGCCAAAATCA+CGG + chr6_3:59160617-59160636 None:intergenic 25.0%
!! TTTCTTTTATAGTGCATGTT+TGG + chr6_3:59160698-59160717 None:intergenic 25.0%
!!! GTTTTGGGAAATTATTGTTT+TGG - chr6_3:59160727-59160746 Msa0955260:intron 25.0%
!!! TATTGTTTTGGTTGCTTTAT+TGG - chr6_3:59160739-59160758 Msa0955260:intron 25.0%
!!! ATTGTTTTGGTTGCTTTATT+GGG - chr6_3:59160740-59160759 Msa0955260:intron 25.0%
!! GGCTTTTATTATGTTATAGT+AGG - chr6_3:59160791-59160810 Msa0955260:intron 25.0%
!!! ATTTTGATAGTTACATTGGA+TGG + chr6_3:59161201-59161220 None:intergenic 25.0%
! ATCCAATGTAACTATCAAAA+TGG - chr6_3:59161200-59161219 Msa0955260:intron 25.0%
!!! TTCCATTTTGATAGTTACAT+TGG + chr6_3:59161205-59161224 None:intergenic 25.0%
! AATGTAACTATCAAAATGGA+AGG - chr6_3:59161204-59161223 Msa0955260:intron 25.0%
! ATGTAACTATCAAAATGGAA+GGG - chr6_3:59161205-59161224 Msa0955260:intron 25.0%
!!! TTTTTAATTGTTTCCTGACA+TGG - chr6_3:59161394-59161413 Msa0955260:intron 25.0%
! AAATAAAAAGATCTGAACCA+TGG + chr6_3:59161512-59161531 None:intergenic 25.0%
! TGAGTTAAATTGAGCAAATT+GGG - chr6_3:59161748-59161767 Msa0955260:CDS 25.0%
!! AGTATTCAATTTCTCTTTTG+TGG - chr6_3:59161811-59161830 Msa0955260:CDS 25.0%
! TATCATTATGCTATGATCAT+TGG + chr6_3:59162055-59162074 None:intergenic 25.0%
! AGTATCAATCTTGAAAACAT+AGG + chr6_3:59162312-59162331 None:intergenic 25.0%
! TTTACAGAAAGAGAAAGAAA+TGG - chr6_3:59162448-59162467 Msa0955260:intron 25.0%
! ATGGAAGTAACTAATCATAT+TGG - chr6_3:59162467-59162486 Msa0955260:intron 25.0%
! AAGTAACTAATCATATTGGT+AGG - chr6_3:59162471-59162490 Msa0955260:intron 25.0%
!!! TTTTCTGTTTCTATTGAATC+TGG + chr6_3:59162518-59162537 None:intergenic 25.0%
! TCTCTAATTGTTCATGTTTA+TGG + chr6_3:59162555-59162574 None:intergenic 25.0%
!!! GGTCTATATTTTTGTATGTA+TGG - chr6_3:59162722-59162741 Msa0955260:intron 25.0%
!!! AAATGTTTTTAGGACACTTA+CGG - chr6_3:59162870-59162889 Msa0955260:intron 25.0%
! GAAAAGAAACTTCAACTTAT+TGG - chr6_3:59162925-59162944 Msa0955260:intron 25.0%
! AATATGAAGATGAAGTTGTA+AGG - chr6_3:59163163-59163182 Msa0955260:intron 25.0%
!!! TTTTCATTGTTTGTTAGTGA+TGG - chr6_3:59163258-59163277 Msa0955260:intron 25.0%
!! TTTTTATGAAAGTCAAAGCA+TGG - chr6_3:59163341-59163360 Msa0955260:five_prime_UTR 25.0%
! TACAAGAACAATAATATGCA+AGG - chr6_3:59163394-59163413 Msa0955260:five_prime_UTR 25.0%
! ACAAGAACAATAATATGCAA+GGG - chr6_3:59163395-59163414 Msa0955260:five_prime_UTR 25.0%
TGTGTATGGTAAATTGGTAA+TGG + chr6_3:59159624-59159643 None:intergenic 30.0%
ATACTGTGTGTATGGTAAAT+TGG + chr6_3:59159630-59159649 None:intergenic 30.0%
GTATAACTGAAGTAGATAAC+AGG - chr6_3:59159646-59159665 Msa0955260:three_prime_UTR 30.0%
AAGAGAAGTAGGGAAATTTA+GGG + chr6_3:59159775-59159794 None:intergenic 30.0%
AAAGAGAAGTAGGGAAATTT+AGG + chr6_3:59159776-59159795 None:intergenic 30.0%
TTGTGGGTGTATGTTAAATT+TGG - chr6_3:59160136-59160155 Msa0955260:CDS 30.0%
! TGTTTTTCACAAAGTTAGTG+AGG - chr6_3:59160306-59160325 Msa0955260:intron 30.0%
!! CGATTAGTATTTTTGCTTCA+TGG + chr6_3:59160380-59160399 None:intergenic 30.0%
GCAAAAATACTAATCGGATT+AGG - chr6_3:59160384-59160403 Msa0955260:intron 30.0%
TATACAAAGATCTTGATGTG+AGG - chr6_3:59160770-59160789 Msa0955260:intron 30.0%
! TTTTAGTCACTCGTGAATTT+TGG - chr6_3:59160928-59160947 Msa0955260:intron 30.0%
GAAATATGAAAGCAAATGAC+TGG + chr6_3:59161043-59161062 None:intergenic 30.0%
!! AACATCTATTTTTCCATGTC+AGG + chr6_3:59161410-59161429 None:intergenic 30.0%
AAAAATAGATGTTGCCAATG+AGG - chr6_3:59161417-59161436 Msa0955260:intron 30.0%
CAGCTATTAGATAAAATCCA+TGG - chr6_3:59161492-59161511 Msa0955260:intron 30.0%
AAACAACTTGTCCTTTAGAT+CGG - chr6_3:59161556-59161575 Msa0955260:intron 30.0%
!!! TTTAGTTTTCACCGATCTAA+AGG + chr6_3:59161570-59161589 None:intergenic 30.0%
GTGAGTTAAATTGAGCAAAT+TGG - chr6_3:59161747-59161766 Msa0955260:CDS 30.0%
ATTCGAGATATACTTAAGAC+AGG - chr6_3:59162140-59162159 Msa0955260:intron 30.0%
! TAGGATTATAAATGCCACTT+TGG - chr6_3:59162283-59162302 Msa0955260:intron 30.0%
TTCAAACAAAATGCTGTCTT+TGG - chr6_3:59162334-59162353 Msa0955260:intron 30.0%
AATCACAAGCACTAAATACT+TGG + chr6_3:59162364-59162383 None:intergenic 30.0%
AACTACTTGTAGAAAATGCT+AGG + chr6_3:59162418-59162437 None:intergenic 30.0%
! ATAGTGATTGGAGTATCTAA+AGG - chr6_3:59162898-59162917 Msa0955260:intron 30.0%
AAACTTCAACTTATTGGTGT+CGG - chr6_3:59162931-59162950 Msa0955260:intron 30.0%
! AATGAAGTAGTCTTGAATCT+TGG - chr6_3:59162976-59162995 Msa0955260:intron 30.0%
AAACGGTAACTACTGTTTGT+TGG + chr6_3:59159599-59159618 None:intergenic 35.0%
CTTCAGTTATACTGTGTGTA+TGG + chr6_3:59159638-59159657 None:intergenic 35.0%
CTGAAGTAGATAACAGGATA+AGG - chr6_3:59159652-59159671 Msa0955260:three_prime_UTR 35.0%
! AGGAACATTTTCGCAAACAT+TGG - chr6_3:59159672-59159691 Msa0955260:three_prime_UTR 35.0%
GAGAAAGAGAAAGAGAAGTA+GGG + chr6_3:59159785-59159804 None:intergenic 35.0%
AGAGAAAGAGAAAGAGAAGT+AGG + chr6_3:59159786-59159805 None:intergenic 35.0%
! GAATCATGATGATGTAGTTG+TGG - chr6_3:59160166-59160185 Msa0955260:intron 35.0%
! AAAGTTAGTGAGGTGTTTGT+AGG - chr6_3:59160316-59160335 Msa0955260:intron 35.0%
AGCTTTCGTAGTAGTAAAAC+AGG - chr6_3:59160529-59160548 Msa0955260:intron 35.0%
! TTAGTAAGTTGCCGTGATTT+TGG - chr6_3:59160603-59160622 Msa0955260:intron 35.0%
GCTTCAACAAAATCATGTTG+CGG - chr6_3:59160644-59160663 Msa0955260:intron 35.0%
! TTTCCACTTCGTTGTGTTTT+AGG + chr6_3:59160859-59160878 None:intergenic 35.0%
GGAAAGTGACTTCTAATTGA+AGG - chr6_3:59160874-59160893 Msa0955260:intron 35.0%
GTGACTTCTAATTGAAGGAT+AGG - chr6_3:59160879-59160898 Msa0955260:intron 35.0%
AAGAAACCAATATGAGTAGC+AGG + chr6_3:59161123-59161142 None:intergenic 35.0%
TAGAAAGACTACCGAATGTA+AGG - chr6_3:59161143-59161162 Msa0955260:intron 35.0%
AATCCGTGATTCCTTACATT+CGG + chr6_3:59161157-59161176 None:intergenic 35.0%
AATGTAAGGAATCACGGATT+GGG - chr6_3:59161157-59161176 Msa0955260:intron 35.0%
ATAGTTACATTGGATGGAAC+GGG + chr6_3:59161195-59161214 None:intergenic 35.0%
GATAGTTACATTGGATGGAA+CGG + chr6_3:59161196-59161215 None:intergenic 35.0%
GGGCAATATTTACAAGTGAA+AGG - chr6_3:59161225-59161244 Msa0955260:intron 35.0%
TTTACAAGTGAAAGGTCCTT+TGG - chr6_3:59161233-59161252 Msa0955260:intron 35.0%
TTACAAGTGAAAGGTCCTTT+GGG - chr6_3:59161234-59161253 Msa0955260:intron 35.0%
!!! GTTGTTTTGAGCAACTAGAA+TGG + chr6_3:59161543-59161562 None:intergenic 35.0%
!! TGTTTTTGCAATCCATGTCA+TGG + chr6_3:59161697-59161716 None:intergenic 35.0%
AATTTAACTCACAAGTGGCA+TGG + chr6_3:59161739-59161758 None:intergenic 35.0%
TGCTCAATTTAACTCACAAG+TGG + chr6_3:59161744-59161763 None:intergenic 35.0%
AGTACTAGTCACAGTGAAAT+TGG - chr6_3:59161782-59161801 Msa0955260:CDS 35.0%
GTGGAAATTCTTGACTGAAT+TGG - chr6_3:59161830-59161849 Msa0955260:CDS 35.0%
TATGATCATTGGCAAGGATT+TGG + chr6_3:59162044-59162063 None:intergenic 35.0%
TTATGCTATGATCATTGGCA+AGG + chr6_3:59162050-59162069 None:intergenic 35.0%
TTTATCGTCACAACTCGAAA+AGG + chr6_3:59162117-59162136 None:intergenic 35.0%
! ATTAGCTCTTTGGATTACTG+GGG + chr6_3:59162584-59162603 None:intergenic 35.0%
! GATTAGCTCTTTGGATTACT+GGG + chr6_3:59162585-59162604 None:intergenic 35.0%
!! GAGAGAGTGTTATCTTTCAT+GGG + chr6_3:59162607-59162626 None:intergenic 35.0%
!! AGAGAGAGTGTTATCTTTCA+TGG + chr6_3:59162608-59162627 None:intergenic 35.0%
GAGCAATTATTAGGTAGGTT+GGG + chr6_3:59162632-59162651 None:intergenic 35.0%
CTATCAAGGGAGCAATTATT+AGG + chr6_3:59162641-59162660 None:intergenic 35.0%
CAGGACAGAACATAGTTATA+GGG + chr6_3:59162670-59162689 None:intergenic 35.0%
! ATGTTTGGATGGAAGGATTT+TGG - chr6_3:59162692-59162711 Msa0955260:intron 35.0%
TTTCATCTACCTTCACTTTG+AGG + chr6_3:59163038-59163057 None:intergenic 35.0%
ATATCCACTAACTGTGATTC+TGG + chr6_3:59163064-59163083 None:intergenic 35.0%
! GATATGACAAGTCTGAGATT+GGG - chr6_3:59163079-59163098 Msa0955260:intron 35.0%
TTGATACCCTTACCTTTGTA+GGG + chr6_3:59163144-59163163 None:intergenic 35.0%
TTTGATACCCTTACCTTTGT+AGG + chr6_3:59163145-59163164 None:intergenic 35.0%
AGATGAAGTTGTAAGGAGAA+AGG - chr6_3:59163170-59163189 Msa0955260:intron 35.0%
ATAACTTTACCGCGCTTTAA+GGG + chr6_3:59163444-59163463 None:intergenic 35.0%
TTACCTCTTCGTTTCAACTC+AGG - chr6_3:59159737-59159756 Msa0955260:three_prime_UTR 40.0%
! TTGCTGGTTGAAGCAATTTG+TGG - chr6_3:59160119-59160138 Msa0955260:CDS 40.0%
! TGCTGGTTGAAGCAATTTGT+GGG - chr6_3:59160120-59160139 Msa0955260:CDS 40.0%
TGACCTAAAACACAACGAAG+TGG - chr6_3:59160853-59160872 Msa0955260:intron 40.0%
AGGATAGGATCTAGTTAACC+AGG - chr6_3:59160894-59160913 Msa0955260:intron 40.0%
ACTAAAACAGATACAGAGCC+TGG + chr6_3:59160915-59160934 None:intergenic 40.0%
CTACCGAATGTAAGGAATCA+CGG - chr6_3:59161151-59161170 Msa0955260:intron 40.0%
GAATGTAAGGAATCACGGAT+TGG - chr6_3:59161156-59161175 Msa0955260:intron 40.0%
GTTAACGAAAGTTCTCCCAA+AGG + chr6_3:59161252-59161271 None:intergenic 40.0%
!! GCAAGAAGAAGGGGTTTTAA+AGG - chr6_3:59161299-59161318 Msa0955260:intron 40.0%
!!! AGGGGTTTTAAAGGTCAGTA+AGG - chr6_3:59161308-59161327 Msa0955260:intron 40.0%
TAAGGCAGTCGAAACTAGAA+GGG - chr6_3:59161326-59161345 Msa0955260:intron 40.0%
AGAAGGGCAAATCAAATGCA+CGG - chr6_3:59161342-59161361 Msa0955260:intron 40.0%
CAGAGAATCTGAATCCTCAT+TGG + chr6_3:59161434-59161453 None:intergenic 40.0%
ACAAATGAATTGTGTCGGAG+AGG + chr6_3:59161632-59161651 None:intergenic 40.0%
GGACGACAAATGAATTGTGT+CGG + chr6_3:59161637-59161656 None:intergenic 40.0%
! TTTTGCAATCCATGTCATGG+AGG + chr6_3:59161694-59161713 None:intergenic 40.0%
! CTTTTTCTGATTGAAGCCGT+GGG + chr6_3:59161878-59161897 None:intergenic 40.0%
TCTGAGTCGCTAGTATCAAA+CGG - chr6_3:59161967-59161986 Msa0955260:CDS 40.0%
TAACTTGACAGTGTGAATGC+AGG - chr6_3:59161997-59162016 Msa0955260:intron 40.0%
TAGGCTCCATTGAATTTGAC+AGG - chr6_3:59162490-59162509 Msa0955260:intron 40.0%
CTGGTTCCTGTCAAATTCAA+TGG + chr6_3:59162499-59162518 None:intergenic 40.0%
!! GGATTAGCTCTTTGGATTAC+TGG + chr6_3:59162586-59162605 None:intergenic 40.0%
!! CTTTCATGGGATTAGCTCTT+TGG + chr6_3:59162594-59162613 None:intergenic 40.0%
GGAGCAATTATTAGGTAGGT+TGG + chr6_3:59162633-59162652 None:intergenic 40.0%
CAAGGGAGCAATTATTAGGT+AGG + chr6_3:59162637-59162656 None:intergenic 40.0%
TATAGGGAGAGAGCTATCAA+GGG + chr6_3:59162654-59162673 None:intergenic 40.0%
TTATAGGGAGAGAGCTATCA+AGG + chr6_3:59162655-59162674 None:intergenic 40.0%
CCAGGACAGAACATAGTTAT+AGG + chr6_3:59162671-59162690 None:intergenic 40.0%
CCTATAACTATGTTCTGTCC+TGG - chr6_3:59162668-59162687 Msa0955260:intron 40.0%
ATGTTCTGTCCTGGTATGTT+TGG - chr6_3:59162677-59162696 Msa0955260:intron 40.0%
! TTTGGATGGAAGGATTTTGG+AGG - chr6_3:59162695-59162714 Msa0955260:intron 40.0%
CTTACGGACAACATAGTGAT+TGG - chr6_3:59162886-59162905 Msa0955260:intron 40.0%
TCAGGGATTGTCATCTTAAC+AGG + chr6_3:59163012-59163031 None:intergenic 40.0%
GTTAAGATGACAATCCCTGA+AGG - chr6_3:59163012-59163031 Msa0955260:intron 40.0%
AACACCAGAATCACAGTTAG+TGG - chr6_3:59163057-59163076 Msa0955260:intron 40.0%
! GGATATGACAAGTCTGAGAT+TGG - chr6_3:59163078-59163097 Msa0955260:intron 40.0%
TTGCGGCTTCGATTAGAAAA+TGG - chr6_3:59163106-59163125 Msa0955260:intron 40.0%
GAAGTTGTAAGGAGAAAGGA+AGG - chr6_3:59163174-59163193 Msa0955260:intron 40.0%
CTTGTAGATAGCAGTTGAGT+TGG + chr6_3:59163380-59163399 None:intergenic 40.0%
! TAACTTTACCGCGCTTTAAG+GGG + chr6_3:59163443-59163462 None:intergenic 40.0%
GATAACTTTACCGCGCTTTA+AGG + chr6_3:59163445-59163464 None:intergenic 40.0%
TGGCAAAAAGCAAAGCCTTG+TGG - chr6_3:59159692-59159711 Msa0955260:three_prime_UTR 45.0%
! AGCCTTGTGGCTTGTAACAA+TGG - chr6_3:59159705-59159724 Msa0955260:three_prime_UTR 45.0%
AGCCATTGTTACAAGCCACA+AGG + chr6_3:59159710-59159729 None:intergenic 45.0%
! GAACCTGAGTTGAAACGAAG+AGG + chr6_3:59159743-59159762 None:intergenic 45.0%
! TAATCGGATTAGGTGTGTCC+TGG - chr6_3:59160394-59160413 Msa0955260:intron 45.0%
CACAATACGTATCCAACACC+AGG + chr6_3:59160415-59160434 None:intergenic 45.0%
CATATGTGTCAGAATCGTGC+TGG + chr6_3:59160445-59160464 None:intergenic 45.0%
! CTTTTGTTGGCGAGAGAAGT+AGG - chr6_3:59161079-59161098 Msa0955260:intron 45.0%
AGTGCTCCTGCTACTCATAT+TGG - chr6_3:59161114-59161133 Msa0955260:intron 45.0%
ACATTGGATGGAACGGGAAT+TGG + chr6_3:59161189-59161208 None:intergenic 45.0%
CTCTCAAGCTTAACTTCTCG+AGG + chr6_3:59161279-59161298 None:intergenic 45.0%
CTCGAGAAGTTAAGCTTGAG+AGG - chr6_3:59161277-59161296 Msa0955260:intron 45.0%
AAGCTTGAGAGGCAAGAAGA+AGG - chr6_3:59161288-59161307 Msa0955260:intron 45.0%
AGCTTGAGAGGCAAGAAGAA+GGG - chr6_3:59161289-59161308 Msa0955260:intron 45.0%
GTAAGGCAGTCGAAACTAGA+AGG - chr6_3:59161325-59161344 Msa0955260:intron 45.0%
GAAGGGCAAATCAAATGCAC+GGG - chr6_3:59161343-59161362 Msa0955260:intron 45.0%
! ATCAAATGCACGGGCTTTTC+AGG - chr6_3:59161352-59161371 Msa0955260:intron 45.0%
AGGTCGAAATAGGGAGAAAG+GGG + chr6_3:59161612-59161631 None:intergenic 45.0%
GAGGTCGAAATAGGGAGAAA+GGG + chr6_3:59161613-59161632 None:intergenic 45.0%
AGAGGTCGAAATAGGGAGAA+AGG + chr6_3:59161614-59161633 None:intergenic 45.0%
CAAGCTTAAGAGGTCTTCTG+TGG + chr6_3:59161667-59161686 None:intergenic 45.0%
TGGAGGATGACAAGCTTAAG+AGG + chr6_3:59161677-59161696 None:intergenic 45.0%
CAAGTGGCATGGCTTGAAAT+TGG + chr6_3:59161728-59161747 None:intergenic 45.0%
!! GCTTTTTCTGATTGAAGCCG+TGG + chr6_3:59161879-59161898 None:intergenic 45.0%
CAGGAAGAACTGATGCAGAA+TGG - chr6_3:59162159-59162178 Msa0955260:intron 45.0%
GAAAACATAGGCAGCCAAAG+TGG + chr6_3:59162300-59162319 None:intergenic 45.0%
TCTGTCCTGGTATGTTTGGA+TGG - chr6_3:59162681-59162700 Msa0955260:intron 45.0%
TCCTGGTATGTTTGGATGGA+AGG - chr6_3:59162685-59162704 Msa0955260:intron 45.0%
TCCTTCCATCCAAACATACC+AGG + chr6_3:59162689-59162708 None:intergenic 45.0%
!! TGGAAGGATTTTGGAGGACT+AGG - chr6_3:59162701-59162720 Msa0955260:intron 45.0%
GGTTATCGTGCTATGGTAGA+AGG - chr6_3:59162952-59162971 Msa0955260:intron 45.0%
! TTACCTTTGTAGGGTTCTGG+AGG + chr6_3:59163135-59163154 None:intergenic 45.0%
TCCAGAACCCTACAAAGGTA+AGG - chr6_3:59163134-59163153 Msa0955260:intron 45.0%
CCAGAACCCTACAAAGGTAA+GGG - chr6_3:59163135-59163154 Msa0955260:intron 45.0%
AGGAGAAAGGAAGGAAAAGC+AGG - chr6_3:59163183-59163202 Msa0955260:intron 45.0%
GGAGAAAGGAAGGAAAAGCA+GGG - chr6_3:59163184-59163203 Msa0955260:intron 45.0%
!! AACTTTACCGCGCTTTAAGG+GGG + chr6_3:59163442-59163461 None:intergenic 45.0%
GATTAGGTGTGTCCTGGTGT+TGG - chr6_3:59160400-59160419 Msa0955260:intron 50.0%
! TGTCAGAATCGTGCTGGTGT+CGG + chr6_3:59160439-59160458 None:intergenic 50.0%
GCTTGAGAGGCAAGAAGAAG+GGG - chr6_3:59161290-59161309 Msa0955260:intron 50.0%
GTGTCGGAGAGGTCGAAATA+GGG + chr6_3:59161621-59161640 None:intergenic 50.0%
TGTGTCGGAGAGGTCGAAAT+AGG + chr6_3:59161622-59161641 None:intergenic 50.0%
GAGGTCTTCTGTGGAAGACA+AGG + chr6_3:59161658-59161677 None:intergenic 50.0%
GCTTGTCATCCTCCATGACA+TGG - chr6_3:59161682-59161701 Msa0955260:intron 50.0%
TGGGAAAGAGTTCGAAGAGG+TGG + chr6_3:59161859-59161878 None:intergenic 50.0%
CCTCTTCGAACTCTTTCCCA+CGG - chr6_3:59161859-59161878 Msa0955260:CDS 50.0%
!! TGGTGTCGGTTATCGTGCTA+TGG - chr6_3:59162945-59162964 Msa0955260:intron 50.0%
!! CCTTCACTTTGAGGCCTTCA+GGG + chr6_3:59163029-59163048 None:intergenic 50.0%
!! ACCTTCACTTTGAGGCCTTC+AGG + chr6_3:59163030-59163049 None:intergenic 50.0%
! GTCTGAGATTGGGCAGTTTG+CGG - chr6_3:59163089-59163108 Msa0955260:intron 50.0%
AGACCTCCAGAACCCTACAA+AGG - chr6_3:59163129-59163148 Msa0955260:intron 50.0%
CCCTTACCTTTGTAGGGTTC+TGG + chr6_3:59163138-59163157 None:intergenic 50.0%
!! GCGCTTTAAGGGGGAATTCA+GGG + chr6_3:59163433-59163452 None:intergenic 50.0%
CTGAATTCCCCCTTAAAGCG+CGG - chr6_3:59163432-59163451 Msa0955260:five_prime_UTR 50.0%
CCGTGGGAAAGAGTTCGAAG+AGG + chr6_3:59161862-59161881 None:intergenic 55.0%
CCCTGAAGGCCTCAAAGTGA+AGG - chr6_3:59163026-59163045 Msa0955260:intron 55.0%
!! CGCGCTTTAAGGGGGAATTC+AGG + chr6_3:59163434-59163453 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 59159566 59163498 59159566 ID=Msa0955260;Name=Msa0955260
chr6_3 mRNA 59159566 59163498 59159566 ID=Msa0955260-mRNA-1;Parent=Msa0955260;Name=Msa0955260-mRNA-1;_AED=0.00;_eAED=0.00;_QI=158|1|1|1|1|1|3|280|226
chr6_3 exon 59159566 59160182 59159566 ID=Msa0955260-mRNA-1:exon:11678;Parent=Msa0955260-mRNA-1
chr6_3 exon 59161691 59161999 59161691 ID=Msa0955260-mRNA-1:exon:11677;Parent=Msa0955260-mRNA-1
chr6_3 exon 59163306 59163498 59163306 ID=Msa0955260-mRNA-1:exon:11676;Parent=Msa0955260-mRNA-1
chr6_3 five_prime_UTR 59163341 59163498 59163341 ID=Msa0955260-mRNA-1:five_prime_utr;Parent=Msa0955260-mRNA-1
chr6_3 CDS 59163306 59163340 59163306 ID=Msa0955260-mRNA-1:cds;Parent=Msa0955260-mRNA-1
chr6_3 CDS 59161691 59161999 59161691 ID=Msa0955260-mRNA-1:cds;Parent=Msa0955260-mRNA-1
chr6_3 CDS 59159846 59160182 59159846 ID=Msa0955260-mRNA-1:cds;Parent=Msa0955260-mRNA-1
chr6_3 three_prime_UTR 59159566 59159845 59159566 ID=Msa0955260-mRNA-1:three_prime_utr;Parent=Msa0955260-mRNA-1
Gene Sequence

>Msa0955260

ATGGCTTCTTCAGTTACCTCTTCGTTTCAACTCAGCAATTTTAAGTCATCTTTTGTTGGCGAGAGAAGTAGGCTCAGAGTTTCAAGTGCTCCTGCTACTCATATTGGTTTCTTTAGAAAGACTACCGAATGTAAGGAATCACGGATTGGGAAACAACCAATTCCCGTTCCATCCAATGTAACTATCAAAATGGAAGGGCAATATTTACAAGTGAAAGGTCCTTTGGGAGAACTTTCGTTAACTTATCCTCGAGAAGTTAAGCTTGAGAGGCAAGAAGAAGGGGTTTTAAAGGTCAGTAAGGCAGTCGAAACTAGAAGGGCAAATCAAATGCACGGGCTTTTCAGGACACTTACGGACAACATAGTGATTGGAGTATCTAAAGGTTTTGAAAAGAAACTTCAACTTATTGGTGTCGGTTATCGTGCTATGGTAGAAGGAAATGAAGTAGTCTTGAATCTTGGATTTTCTCATCCTGTTAAGATGACAATCCCTGAAGGCCTCAAAGTGAAGGTAGATGAAAACACCAGAATCACAGTTAGTGGATATGACAAGTCTGAGATTGGGCAGTTTGCGGCTTCGATTAGAAAATGGAGACCTCCAGAACCCTACAAAGGTAAGGGTATCAAATATGAAGATGAAGTTGTAAGGAGAAAGGAAGGAAAAGCAGGGAAGAAGAAGTGA

Protein sequence

>Msa0955260

MASSVTSSFQLSNFKSSFVGERSRLRVSSAPATHIGFFRKTTECKESRIGKQPIPVPSNVTIKMEGQYLQVKGPLGELSLTYPREVKLERQEEGVLKVSKAVETRRANQMHGLFRTLTDNIVIGVSKGFEKKLQLIGVGYRAMVEGNEVVLNLGFSHPVKMTIPEGLKVKVDENTRITVSGYDKSEIGQFAASIRKWRPPEPYKGKGIKYEDEVVRRKEGKAGKKK*