Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0644350 | XP_013456128.1 | 100.000 | 93 | 0 | 0 | 1 | 93 | 1 | 93 | 2.15e-62 | 194 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0644350 | sp|Q9XGX8|TIM9_MESCR | 79.570 | 93 | 19 | 0 | 1 | 93 | 1 | 93 | 8.09e-53 | 162 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002750 | Msa0644350 | 0.832717 | 8.062944e-56 | -8.615850e-47 |
| Msa0002790 | Msa0644350 | 0.830259 | 3.248540e-55 | -8.615850e-47 |
| Msa0603320 | Msa0644350 | 0.864061 | 1.593967e-64 | -8.615850e-47 |
| Msa0644350 | Msa0881290 | 0.816031 | 6.818300e-52 | -8.615850e-47 |
| Msa0644350 | Msa1006840 | 0.804216 | 2.402672e-49 | -8.615850e-47 |
| Msa0644350 | Msa1088490 | 0.834746 | 2.507675e-56 | -8.615850e-47 |
| Msa0644350 | Msa1215820 | 0.830947 | 2.203578e-55 | -8.615850e-47 |
| Msa0644350 | Msa1343260 | 0.812447 | 4.220893e-51 | -8.615850e-47 |
| Msa0644350 | Msa1366180 | 0.836818 | 7.487781e-57 | -8.615850e-47 |
| Msa0644350 | Msa1432700 | 0.837446 | 5.172731e-57 | -8.615850e-47 |
| Msa0189700 | Msa0644350 | 0.815423 | 9.313545e-52 | -8.615850e-47 |
| Msa0232010 | Msa0644350 | 0.811027 | 8.594834e-51 | -8.615850e-47 |
| Msa0232080 | Msa0644350 | 0.811276 | 7.591110e-51 | -8.615850e-47 |
| Msa0289580 | Msa0644350 | 0.800321 | 1.522727e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0644350 | MtrunA17_Chr4g0031531 | 100.000 | 93 | 0 | 0 | 1 | 93 | 1 | 93 | 1.98e-66 | 194 |
| Msa0644350 | MtrunA17_Chr4g0009801 | 59.140 | 93 | 38 | 0 | 1 | 93 | 1 | 93 | 1.75e-40 | 129 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0644350 | AT3G46560.1 | 78.495 | 93 | 20 | 0 | 1 | 93 | 1 | 93 | 4.58e-51 | 155 |
Find 31 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGATTATACGCAGTGATTT+AGG | 0.125954 | 4_3:-48200831 | None:intergenic |
| CAAAAGCATGATTGCTGATA+TGG | 0.238381 | 4_3:+48200869 | Msa0644350:CDS |
| CGATTATACGCAGTGATTTA+GGG | 0.278105 | 4_3:-48200830 | None:intergenic |
| ATCTTCTTCCACACTTAGTT+AGG | 0.288578 | 4_3:+48200769 | Msa0644350:five_prime_UTR |
| TATAATCGTTCGATCCAAAA+TGG | 0.326606 | 4_3:+48200845 | Msa0644350:exon |
| AACCTCACCTGTCACGGATT+TGG | 0.342119 | 4_3:-48200944 | None:intergenic |
| TTAGTTAGGGTTTATCTTTA+CGG | 0.364470 | 4_3:+48200783 | Msa0644350:five_prime_UTR |
| TGAATGGTGATACTAAATAT+TGG | 0.384645 | 4_3:-48204709 | None:intergenic |
| CCAGGTTATTATACATTCTC+AGG | 0.398941 | 4_3:-48204325 | None:intergenic |
| AATCTTGAGTTGCAGCTCCT+TGG | 0.400935 | 4_3:-48204487 | None:intergenic |
| ATTCTTTGTTTATCAGCCTC+TGG | 0.451877 | 4_3:-48200900 | None:intergenic |
| TCTTCTTCCACACTTAGTTA+GGG | 0.462001 | 4_3:+48200770 | Msa0644350:five_prime_UTR |
| AGAGGCTGATAAACAAAGAA+TGG | 0.503860 | 4_3:+48200902 | Msa0644350:CDS |
| ATCAGCTCCAAATCCGTGAC+AGG | 0.514968 | 4_3:+48200937 | Msa0644350:CDS |
| AAAGAAGGAACGAAATTGAA+TGG | 0.520348 | 4_3:-48204725 | None:intergenic |
| CTCTGCACATCTTCGAACAC+AGG | 0.526331 | 4_3:-48204414 | None:intergenic |
| TTTGGGAACCTCACCTGTCA+CGG | 0.540460 | 4_3:-48200950 | None:intergenic |
| CTGAAGCACTCTATGCGTGT+TGG | 0.545186 | 4_3:+48204443 | Msa0644350:CDS |
| GATTTGGAGCTGATCGATCA+TGG | 0.557131 | 4_3:-48200928 | None:intergenic |
| CCTGAGAATGTATAATAACC+TGG | 0.571370 | 4_3:+48204325 | Msa0644350:CDS |
| CATGAAAGCATCTCTCCACC+AGG | 0.576768 | 4_3:-48204343 | None:intergenic |
| AGATAAACCCTAACTAAGTG+TGG | 0.591917 | 4_3:-48200777 | None:intergenic |
| ACTCTATGCGTGTTGGCATG+AGG | 0.597417 | 4_3:+48204450 | Msa0644350:CDS |
| TAAATCCCTGCAAAAGCAAG+AGG | 0.610554 | 4_3:+48204388 | Msa0644350:CDS |
| GGAGCTGCAACTCAAGATTG+AGG | 0.617510 | 4_3:+48204491 | Msa0644350:CDS |
| ATATTGGCAATCAAGAATGA+CGG | 0.650436 | 4_3:-48204693 | None:intergenic |
| AGGTTTGCTGAGCTCAACCA+AGG | 0.659807 | 4_3:+48204470 | Msa0644350:CDS |
| GAGATGCTTTCATGATTGTG+TGG | 0.661772 | 4_3:+48204352 | Msa0644350:CDS |
| AAGAAGATGATATATATACT+AGG | 0.665897 | 4_3:-48200754 | None:intergenic |
| TGATATGGAAAATCTTCCAG+AGG | 0.691125 | 4_3:+48200884 | Msa0644350:CDS |
| GAGAATGTATAATAACCTGG+TGG | 0.692374 | 4_3:+48204328 | Msa0644350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTTATTAGAACTTATAA+CGG | - | chr4_3:48204119-48204138 | None:intergenic | 10.0% |
| !!! | ATAATGTGTTGAATTTATTT+TGG | + | chr4_3:48201117-48201136 | Msa0644350:intron | 15.0% |
| !!! | TTGAATTTATTTTGGAATTT+GGG | + | chr4_3:48201125-48201144 | Msa0644350:intron | 15.0% |
| !! | ATATAATGTTCTATTTAATG+TGG | + | chr4_3:48201529-48201548 | Msa0644350:intron | 15.0% |
| !! | CGTTTAAATCTTAATTTATT+AGG | - | chr4_3:48202144-48202163 | None:intergenic | 15.0% |
| !! | AATAAATTAAGATTTAAACG+TGG | + | chr4_3:48202144-48202163 | Msa0644350:intron | 15.0% |
| !! | ACATTAAATAGATCATTAAA+CGG | - | chr4_3:48202705-48202724 | None:intergenic | 15.0% |
| !!! | TGAATCTTTTTTAAAATTTG+AGG | + | chr4_3:48203168-48203187 | Msa0644350:intron | 15.0% |
| !! | AATAATTTGAGCTTATTTAT+TGG | - | chr4_3:48203943-48203962 | None:intergenic | 15.0% |
| !!! | ATTTTACATATGACTTTATT+AGG | + | chr4_3:48204172-48204191 | Msa0644350:intron | 15.0% |
| !!! | TTTTACATATGACTTTATTA+GGG | + | chr4_3:48204173-48204192 | Msa0644350:intron | 15.0% |
| !! | AAGAAGATGATATATATACT+AGG | - | chr4_3:48200757-48200776 | None:intergenic | 20.0% |
| !! | AAAAAAACCTAAACTTTACA+AGG | - | chr4_3:48201067-48201086 | None:intergenic | 20.0% |
| !!! | GTTGAATTTATTTTGGAATT+TGG | + | chr4_3:48201124-48201143 | Msa0644350:intron | 20.0% |
| !!! | TGAATTTATTTTGGAATTTG+GGG | + | chr4_3:48201126-48201145 | Msa0644350:intron | 20.0% |
| !!! | CATCGTAATTTGTAAATAAT+TGG | + | chr4_3:48201152-48201171 | Msa0644350:intron | 20.0% |
| !! | TTGGTTTCATAAAATATTAG+TGG | + | chr4_3:48202027-48202046 | Msa0644350:intron | 20.0% |
| !!! | CTTAATTTATTAGGCTTTAT+TGG | - | chr4_3:48202135-48202154 | None:intergenic | 20.0% |
| !!! | TTGAATCTGTTTTTATATTG+AGG | + | chr4_3:48202298-48202317 | Msa0644350:intron | 20.0% |
| !!! | TGAATCTGTTTTTATATTGA+GGG | + | chr4_3:48202299-48202318 | Msa0644350:intron | 20.0% |
| !! | GTTTAATGATCTATTTAATG+TGG | + | chr4_3:48202704-48202723 | Msa0644350:intron | 20.0% |
| !!! | GCTTTATTATTTACTCATTT+TGG | + | chr4_3:48202991-48203010 | Msa0644350:intron | 20.0% |
| !!! | CTTTTTTTTCTTTCTTTTGT+TGG | + | chr4_3:48203125-48203144 | Msa0644350:intron | 20.0% |
| !! | TCAATATAGTACTTTACTTA+AGG | - | chr4_3:48203979-48203998 | None:intergenic | 20.0% |
| !! | TTATTGCTTCATTACATTAT+GGG | + | chr4_3:48204203-48204222 | Msa0644350:intron | 20.0% |
| ! | TTAGTTAGGGTTTATCTTTA+CGG | + | chr4_3:48200783-48200802 | Msa0644350:five_prime_UTR | 25.0% |
| !! | AAAAACGAAGCAATGATTTT+GGG | - | chr4_3:48200970-48200989 | None:intergenic | 25.0% |
| !! | AAAAAACGAAGCAATGATTT+TGG | - | chr4_3:48200971-48200990 | None:intergenic | 25.0% |
| ! | ATTTCTACCTTGTAAAGTTT+AGG | + | chr4_3:48201057-48201076 | Msa0644350:intron | 25.0% |
| !!! | TTTTTTTCTTTTTTCCCTGT+TGG | + | chr4_3:48201083-48201102 | Msa0644350:intron | 25.0% |
| ! | ATAGACAACAAAAATCAATG+TGG | - | chr4_3:48201511-48201530 | None:intergenic | 25.0% |
| !!! | TTCTAATGAACTAGTCTTTT+GGG | - | chr4_3:48201955-48201974 | None:intergenic | 25.0% |
| ! | AAAACTCAATGTGGTAATTA+AGG | - | chr4_3:48201992-48202011 | None:intergenic | 25.0% |
| ! | TAAAATATTAGTGGTGTGTT+TGG | + | chr4_3:48202036-48202055 | Msa0644350:intron | 25.0% |
| ! | AAAATATTAGTGGTGTGTTT+GGG | + | chr4_3:48202037-48202056 | Msa0644350:intron | 25.0% |
| ! | TCATGCTAATTTATAAGTTG+CGG | + | chr4_3:48202324-48202343 | Msa0644350:intron | 25.0% |
| !!! | AGATGTCATTTTTGGATAAT+AGG | + | chr4_3:48202527-48202546 | Msa0644350:intron | 25.0% |
| !! | AATTTAATGAACTAGTCTCT+GGG | - | chr4_3:48202640-48202659 | None:intergenic | 25.0% |
| !! | AGAGACTAGTTCATTAAATT+GGG | + | chr4_3:48202640-48202659 | Msa0644350:intron | 25.0% |
| ! | TTCATTCATCTATCACTATT+TGG | + | chr4_3:48202808-48202827 | Msa0644350:intron | 25.0% |
| ! | TATACCTTAATACAGTCTAT+AGG | + | chr4_3:48202834-48202853 | Msa0644350:intron | 25.0% |
| ! | GTAAATAATAAAGCTCAATG+TGG | - | chr4_3:48202985-48203004 | None:intergenic | 25.0% |
| ! | AAATAAATGTACAAACTTCG+AGG | - | chr4_3:48203076-48203095 | None:intergenic | 25.0% |
| !!! | TTTTAAAATTTGAGGCTTCA+TGG | + | chr4_3:48203176-48203195 | Msa0644350:intron | 25.0% |
| !!! | TTTTAAGGAGAACATCAATA+TGG | - | chr4_3:48203279-48203298 | None:intergenic | 25.0% |
| ! | CAAATTATCAACATGTCATA+AGG | + | chr4_3:48203875-48203894 | Msa0644350:intron | 25.0% |
| ! | GTTATTGCTTCATTACATTA+TGG | + | chr4_3:48204202-48204221 | Msa0644350:intron | 25.0% |
| ! | TATTGCTTCATTACATTATG+GGG | + | chr4_3:48204204-48204223 | Msa0644350:intron | 25.0% |
| !!! | ACTTTTGCTATTTTAAAGTG+AGG | + | chr4_3:48204568-48204587 | Msa0644350:three_prime_UTR | 25.0% |
| ! | TGAATGGTGATACTAAATAT+TGG | - | chr4_3:48204712-48204731 | None:intergenic | 25.0% |
| !!! | TGATTTAGGGTTTTGAGATT+GGG | - | chr4_3:48200820-48200839 | None:intergenic | 30.0% |
| TATAATCGTTCGATCCAAAA+TGG | + | chr4_3:48200845-48200864 | Msa0644350:exon | 30.0% | |
| ! | AATCATGCTTTTGTCCATTT+TGG | - | chr4_3:48200862-48200881 | None:intergenic | 30.0% |
| TATGCTAATACAAACCAACA+GGG | - | chr4_3:48201100-48201119 | None:intergenic | 30.0% | |
| TTATGCTAATACAAACCAAC+AGG | - | chr4_3:48201101-48201120 | None:intergenic | 30.0% | |
| !!! | TGTCATGTTTTTTGGAGAAT+AGG | + | chr4_3:48201358-48201377 | Msa0644350:intron | 30.0% |
| ! | GATAGACTAGTTAGTTAGAT+GGG | + | chr4_3:48201472-48201491 | Msa0644350:intron | 30.0% |
| ATAAGAGCCAATGTCTATAA+CGG | + | chr4_3:48201574-48201593 | Msa0644350:intron | 30.0% | |
| TGAAGTTATCATTGTGAGTT+AGG | - | chr4_3:48201684-48201703 | None:intergenic | 30.0% | |
| AACTTCAATTGTTACGATGT+AGG | + | chr4_3:48201697-48201716 | Msa0644350:intron | 30.0% | |
| ACTTCAATTGTTACGATGTA+GGG | + | chr4_3:48201698-48201717 | Msa0644350:intron | 30.0% | |
| !!! | CTTCTAATGAACTAGTCTTT+TGG | - | chr4_3:48201956-48201975 | None:intergenic | 30.0% |
| ! | CAAAAGACTAGTTCATTAGA+AGG | + | chr4_3:48201954-48201973 | Msa0644350:intron | 30.0% |
| AATGTGGTAATTAAGGCATA+AGG | - | chr4_3:48201985-48202004 | None:intergenic | 30.0% | |
| ! | TTTTCCACCTTGCAAATTTT+TGG | + | chr4_3:48202234-48202253 | Msa0644350:intron | 30.0% |
| ! | TTTCCACCTTGCAAATTTTT+GGG | + | chr4_3:48202235-48202254 | Msa0644350:intron | 30.0% |
| AACTAACCCAAAAATTTGCA+AGG | - | chr4_3:48202244-48202263 | None:intergenic | 30.0% | |
| !!! | GTTAGTTTTTGTTCTTCTGT+TGG | + | chr4_3:48202257-48202276 | Msa0644350:intron | 30.0% |
| CATGCTAATTTATAAGTTGC+GGG | + | chr4_3:48202325-48202344 | Msa0644350:intron | 30.0% | |
| !! | TTTTAAGGAGAACGTAACTA+TGG | - | chr4_3:48202394-48202413 | None:intergenic | 30.0% |
| !!! | ACACTTGTAGATGTCATTTT+TGG | + | chr4_3:48202519-48202538 | Msa0644350:intron | 30.0% |
| !!! | GTCTCTGTCTAAGATTTTTT+TGG | + | chr4_3:48202587-48202606 | Msa0644350:intron | 30.0% |
| !!! | TCTGTCTAAGATTTTTTTGG+TGG | + | chr4_3:48202590-48202609 | Msa0644350:intron | 30.0% |
| ! | CAATTTAATGAACTAGTCTC+TGG | - | chr4_3:48202641-48202660 | None:intergenic | 30.0% |
| ! | CAGAGACTAGTTCATTAAAT+TGG | + | chr4_3:48202639-48202658 | Msa0644350:intron | 30.0% |
| AAAGTGGTAATTAAACCATG+AGG | - | chr4_3:48202670-48202689 | None:intergenic | 30.0% | |
| ACGGATAAGAAAAATCAAAG+TGG | - | chr4_3:48202686-48202705 | None:intergenic | 30.0% | |
| TCTACCTATAGACTGTATTA+AGG | - | chr4_3:48202841-48202860 | None:intergenic | 30.0% | |
| ! | ATAGTGTTTTCATTGAGAGT+TGG | - | chr4_3:48202876-48202895 | None:intergenic | 30.0% |
| AGTTATGACTTAAGCCAATA+TGG | + | chr4_3:48202904-48202923 | Msa0644350:intron | 30.0% | |
| ! | TTTTCTACCGTGCAAATTTT+AGG | + | chr4_3:48203097-48203116 | Msa0644350:intron | 30.0% |
| ! | TTTCTACCGTGCAAATTTTA+GGG | + | chr4_3:48203098-48203117 | Msa0644350:intron | 30.0% |
| !! | TTGGTTTGTATTAGCATTAC+AGG | + | chr4_3:48203144-48203163 | Msa0644350:intron | 30.0% |
| ! | TTTTGATGTCCTCCTTAAAA+TGG | + | chr4_3:48203221-48203240 | Msa0644350:intron | 30.0% |
| ! | CAAAATTTGCCACCATTTTA+AGG | - | chr4_3:48203236-48203255 | None:intergenic | 30.0% |
| AGAAACATTCAAAAGTCACA+CGG | - | chr4_3:48203303-48203322 | None:intergenic | 30.0% | |
| ! | TGACTTTTGAATGTTTCTTC+TGG | + | chr4_3:48203305-48203324 | Msa0644350:intron | 30.0% |
| ! | GGAACTACATTTTCAATAAG+TGG | + | chr4_3:48203336-48203355 | Msa0644350:intron | 30.0% |
| CATTAGATGAAGGCTTAATT+AGG | + | chr4_3:48203415-48203434 | Msa0644350:intron | 30.0% | |
| TGAAGTTGTTTATCCAAACA+AGG | - | chr4_3:48203716-48203735 | None:intergenic | 30.0% | |
| TTATTTCCATAAGTTGTCCA+GGG | - | chr4_3:48203838-48203857 | None:intergenic | 30.0% | |
| TACTTTACTTAAGGTCTGTT+GGG | - | chr4_3:48203970-48203989 | None:intergenic | 30.0% | |
| CTTTCTTATCTACTCAATGT+GGG | + | chr4_3:48204000-48204019 | Msa0644350:intron | 30.0% | |
| TATGACTTTATTAGGGTGAT+TGG | + | chr4_3:48204180-48204199 | Msa0644350:intron | 30.0% | |
| ATATTGGCAATCAAGAATGA+CGG | - | chr4_3:48204696-48204715 | None:intergenic | 30.0% | |
| ATCTTCTTCCACACTTAGTT+AGG | + | chr4_3:48200769-48200788 | Msa0644350:five_prime_UTR | 35.0% | |
| TCTTCTTCCACACTTAGTTA+GGG | + | chr4_3:48200770-48200789 | Msa0644350:five_prime_UTR | 35.0% | |
| AGATAAACCCTAACTAAGTG+TGG | - | chr4_3:48200780-48200799 | None:intergenic | 35.0% | |
| !!! | GTGATTTAGGGTTTTGAGAT+TGG | - | chr4_3:48200821-48200840 | None:intergenic | 35.0% |
| CGATTATACGCAGTGATTTA+GGG | - | chr4_3:48200833-48200852 | None:intergenic | 35.0% | |
| ACGATTATACGCAGTGATTT+AGG | - | chr4_3:48200834-48200853 | None:intergenic | 35.0% | |
| ! | CAAAAGCATGATTGCTGATA+TGG | + | chr4_3:48200869-48200888 | Msa0644350:CDS | 35.0% |
| TGATATGGAAAATCTTCCAG+AGG | + | chr4_3:48200884-48200903 | Msa0644350:CDS | 35.0% | |
| ! | ATTCTTTGTTTATCAGCCTC+TGG | - | chr4_3:48200903-48200922 | None:intergenic | 35.0% |
| AGAGGCTGATAAACAAAGAA+TGG | + | chr4_3:48200902-48200921 | Msa0644350:CDS | 35.0% | |
| AATAAATGTACCCCCTTTGA+GGG | - | chr4_3:48201035-48201054 | None:intergenic | 35.0% | |
| AAATAAATGTACCCCCTTTG+AGG | - | chr4_3:48201036-48201055 | None:intergenic | 35.0% | |
| !! | TTTTAAGGAGAACATCACTC+TGG | - | chr4_3:48201221-48201240 | None:intergenic | 35.0% |
| !!! | CAATAGTCACACTGGTTTTA+AGG | - | chr4_3:48201236-48201255 | None:intergenic | 35.0% |
| ! | TGACTATTGAATGTTGCTTC+TGG | + | chr4_3:48201247-48201266 | Msa0644350:intron | 35.0% |
| !!! | CTTGTAGCTGTCATGTTTTT+TGG | + | chr4_3:48201350-48201369 | Msa0644350:intron | 35.0% |
| ! | ATGCTGTCTTTTAGTACCTT+TGG | + | chr4_3:48201396-48201415 | Msa0644350:intron | 35.0% |
| ! | TGCTGTCTTTTAGTACCTTT+GGG | + | chr4_3:48201397-48201416 | Msa0644350:intron | 35.0% |
| TATGACATAAGTTCATGAGC+CGG | + | chr4_3:48201441-48201460 | Msa0644350:intron | 35.0% | |
| ! | CGATAGACTAGTTAGTTAGA+TGG | + | chr4_3:48201471-48201490 | Msa0644350:intron | 35.0% |
| !! | ATAGACATTGGCTCTTATAG+AGG | - | chr4_3:48201572-48201591 | None:intergenic | 35.0% |
| GTAGACAAGAAAACTCAATG+TGG | - | chr4_3:48202001-48202020 | None:intergenic | 35.0% | |
| ! | TTTTCTTGTCTACTCGATGT+TGG | + | chr4_3:48202008-48202027 | Msa0644350:intron | 35.0% |
| ! | GTTTGGGTTTCAGTTCAAAA+AGG | + | chr4_3:48202053-48202072 | Msa0644350:intron | 35.0% |
| GTAACAGTCTAGTGTTTGTT+TGG | - | chr4_3:48202113-48202132 | None:intergenic | 35.0% | |
| TAACCCAAAAATTTGCAAGG+TGG | - | chr4_3:48202241-48202260 | None:intergenic | 35.0% | |
| !!! | TGAAAGTCACACTGGTTTTA+AGG | - | chr4_3:48202409-48202428 | None:intergenic | 35.0% |
| ! | GTGACTTTCAATGTTGCTTA+TGG | + | chr4_3:48202419-48202438 | Msa0644350:intron | 35.0% |
| !! | AATGTTGCTTATGGACGTTT+TGG | + | chr4_3:48202428-48202447 | Msa0644350:intron | 35.0% |
| !! | ATGTTGCTTATGGACGTTTT+GGG | + | chr4_3:48202429-48202448 | Msa0644350:intron | 35.0% |
| !!! | CTTAGTTGTGTGCTGTTTTT+CGG | + | chr4_3:48202556-48202575 | Msa0644350:intron | 35.0% |
| AAATCTTAGACAGAGACCAA+AGG | - | chr4_3:48202584-48202603 | None:intergenic | 35.0% | |
| AGATGAATGAAGCCATGAAA+GGG | - | chr4_3:48202799-48202818 | None:intergenic | 35.0% | |
| TAGATGAATGAAGCCATGAA+AGG | - | chr4_3:48202800-48202819 | None:intergenic | 35.0% | |
| ACCTAATGAACAAGTCTCTA+GGG | - | chr4_3:48202939-48202958 | None:intergenic | 35.0% | |
| ! | TTCTACCGTGCAAATTTTAG+GGG | + | chr4_3:48203099-48203118 | Msa0644350:intron | 35.0% |
| AGTAACCCCTAAAATTTGCA+CGG | - | chr4_3:48203107-48203126 | None:intergenic | 35.0% | |
| CTTCATGGTATGTAAGTTGT+TGG | + | chr4_3:48203191-48203210 | Msa0644350:intron | 35.0% | |
| !! | AATTTGCCACCATTTTAAGG+AGG | - | chr4_3:48203233-48203252 | None:intergenic | 35.0% |
| GAAACATTCAAAAGTCACAC+GGG | - | chr4_3:48203302-48203321 | None:intergenic | 35.0% | |
| ! | AATGTTTCTTCTGGACGTTT+TGG | + | chr4_3:48203314-48203333 | Msa0644350:intron | 35.0% |
| ! | ATGTTTCTTCTGGACGTTTT+GGG | + | chr4_3:48203315-48203334 | Msa0644350:intron | 35.0% |
| CTCACTAGTTCATTAGATGA+AGG | + | chr4_3:48203405-48203424 | Msa0644350:intron | 35.0% | |
| TCGGCTCTTAAAGTCTTAAA+GGG | - | chr4_3:48203480-48203499 | None:intergenic | 35.0% | |
| TTAAGAGCCGACATATACTA+TGG | + | chr4_3:48203489-48203508 | Msa0644350:intron | 35.0% | |
| GTGAAAGCCATAGTATATGT+CGG | - | chr4_3:48203499-48203518 | None:intergenic | 35.0% | |
| CTACAGAAAGGAATAGAATG+AGG | - | chr4_3:48203591-48203610 | None:intergenic | 35.0% | |
| TTGTGCTTTCATTGAGAGTT+AGG | - | chr4_3:48203614-48203633 | None:intergenic | 35.0% | |
| TTGTATTAGACTCTCCTTGT+GGG | - | chr4_3:48203653-48203672 | None:intergenic | 35.0% | |
| TTTGTATTAGACTCTCCTTG+TGG | - | chr4_3:48203654-48203673 | None:intergenic | 35.0% | |
| CTTATTTCCATAAGTTGTCC+AGG | - | chr4_3:48203839-48203858 | None:intergenic | 35.0% | |
| ! | TTATCCTTAGTTCTCCCAAA+CGG | + | chr4_3:48203900-48203919 | Msa0644350:intron | 35.0% |
| GTACTTTACTTAAGGTCTGT+TGG | - | chr4_3:48203971-48203990 | None:intergenic | 35.0% | |
| GCTTTCTTATCTACTCAATG+TGG | + | chr4_3:48203999-48204018 | Msa0644350:intron | 35.0% | |
| CTCATGATAGATTAGTGGTA+TGG | + | chr4_3:48204024-48204043 | Msa0644350:intron | 35.0% | |
| ! | TTATGGGGCTCTTGTATTTT+TGG | + | chr4_3:48204219-48204238 | Msa0644350:intron | 35.0% |
| TAGTTGACATATTACCAGAC+AGG | + | chr4_3:48204270-48204289 | Msa0644350:intron | 35.0% | |
| AGTTGACATATTACCAGACA+GGG | + | chr4_3:48204271-48204290 | Msa0644350:intron | 35.0% | |
| CCAGGTTATTATACATTCTC+AGG | - | chr4_3:48204328-48204347 | None:intergenic | 35.0% | |
| CCTGAGAATGTATAATAACC+TGG | + | chr4_3:48204325-48204344 | Msa0644350:CDS | 35.0% | |
| GAGAATGTATAATAACCTGG+TGG | + | chr4_3:48204328-48204347 | Msa0644350:CDS | 35.0% | |
| ATAAATGTACCCCCTTTGAG+GGG | - | chr4_3:48201034-48201053 | None:intergenic | 40.0% | |
| GCAACATTCAATAGTCACAC+TGG | - | chr4_3:48201244-48201263 | None:intergenic | 40.0% | |
| !! | AATGTTGCTTCTGGACGTTT+TGG | + | chr4_3:48201256-48201275 | Msa0644350:intron | 40.0% |
| !! | ATGTTGCTTCTGGACGTTTT+GGG | + | chr4_3:48201257-48201276 | Msa0644350:intron | 40.0% |
| CATGACAGCTACAAGTGTTT+AGG | - | chr4_3:48201345-48201364 | None:intergenic | 40.0% | |
| TACCTTTGGGCTCTGTTTAA+TGG | + | chr4_3:48201410-48201429 | Msa0644350:intron | 40.0% | |
| TTCCATTAAACAGAGCCCAA+AGG | - | chr4_3:48201415-48201434 | None:intergenic | 40.0% | |
| ATGACATAAGTTCATGAGCC+GGG | + | chr4_3:48201442-48201461 | Msa0644350:intron | 40.0% | |
| TCGATGAATGAAACCACCAA+CGG | - | chr4_3:48201609-48201628 | None:intergenic | 40.0% | |
| TGGTGGTTTCATTCATCGAT+CGG | + | chr4_3:48201610-48201629 | Msa0644350:intron | 40.0% | |
| !! | ATTCATCGATCGGTTTTCAG+TGG | + | chr4_3:48201620-48201639 | Msa0644350:intron | 40.0% |
| TGTGAGTTAGGATACAGAGA+GGG | - | chr4_3:48201672-48201691 | None:intergenic | 40.0% | |
| TTGTGAGTTAGGATACAGAG+AGG | - | chr4_3:48201673-48201692 | None:intergenic | 40.0% | |
| GTTACGATGTAGGGTATGTT+TGG | + | chr4_3:48201707-48201726 | Msa0644350:intron | 40.0% | |
| ! | TATGTTTGGATGGAGGGTTT+TGG | + | chr4_3:48201721-48201740 | Msa0644350:intron | 40.0% |
| !! | TTCTGGAGGAGGTTTTTGAA+GGG | - | chr4_3:48201907-48201926 | None:intergenic | 40.0% |
| !! | TTTCTGGAGGAGGTTTTTGA+AGG | - | chr4_3:48201908-48201927 | None:intergenic | 40.0% |
| AGCAACATTGAAAGTCACAC+TGG | - | chr4_3:48202417-48202436 | None:intergenic | 40.0% | |
| ATTAAATTGGGAGAGCCTCA+TGG | + | chr4_3:48202652-48202671 | Msa0644350:intron | 40.0% | |
| AAGGGATAAAAGTGGGTGAA+AGG | - | chr4_3:48202774-48202793 | None:intergenic | 40.0% | |
| AAGGGGAAAGGGATAAAAGT+GGG | - | chr4_3:48202781-48202800 | None:intergenic | 40.0% | |
| AAAGGGGAAAGGGATAAAAG+TGG | - | chr4_3:48202782-48202801 | None:intergenic | 40.0% | |
| TTTATCCCTTTCCCCTTTCA+TGG | + | chr4_3:48202784-48202803 | Msa0644350:intron | 40.0% | |
| GATGAATGAAGCCATGAAAG+GGG | - | chr4_3:48202798-48202817 | None:intergenic | 40.0% | |
| TAGGGTTAGACTCTCCATAT+TGG | - | chr4_3:48202921-48202940 | None:intergenic | 40.0% | |
| ! | ACCCTAGAGACTTGTTCATT+AGG | + | chr4_3:48202935-48202954 | Msa0644350:intron | 40.0% |
| CACCTAATGAACAAGTCTCT+AGG | - | chr4_3:48202940-48202959 | None:intergenic | 40.0% | |
| ! | CTAGAGACTTGTTCATTAGG+TGG | + | chr4_3:48202938-48202957 | Msa0644350:intron | 40.0% |
| AATGTGGTACTTAAGTCGTG+AGG | - | chr4_3:48202969-48202988 | None:intergenic | 40.0% | |
| AAACTTCGAGGCGTAAATCT+GGG | - | chr4_3:48203064-48203083 | None:intergenic | 40.0% | |
| TGATGTCCTCCTTAAAATGG+TGG | + | chr4_3:48203224-48203243 | Msa0644350:intron | 40.0% | |
| ! | CAAAAGTCACACGGGTTTTA+AGG | - | chr4_3:48203294-48203313 | None:intergenic | 40.0% |
| ! | GTCGGCTCTTAAAGTCTTAA+AGG | - | chr4_3:48203481-48203500 | None:intergenic | 40.0% |
| AAATGAGTGAACCTGCCAAA+GGG | - | chr4_3:48203542-48203561 | None:intergenic | 40.0% | |
| TTGAGAGTTAGGCTACAGAA+AGG | - | chr4_3:48203603-48203622 | None:intergenic | 40.0% | |
| CATCAAGTCTAAGAACCTCA+TGG | + | chr4_3:48203683-48203702 | Msa0644350:intron | 40.0% | |
| AAACAAGGTCTTAAGCCATG+AGG | - | chr4_3:48203701-48203720 | None:intergenic | 40.0% | |
| TCATGGCTTAAGACCTTGTT+TGG | + | chr4_3:48203700-48203719 | Msa0644350:intron | 40.0% | |
| !! | GCTATTTTCATAAGTTGCCC+TGG | + | chr4_3:48203818-48203837 | Msa0644350:intron | 40.0% |
| AAACACTTGTGAGACCGTTT+GGG | - | chr4_3:48203917-48203936 | None:intergenic | 40.0% | |
| TGGGTCTCATGATAGATTAG+TGG | + | chr4_3:48204019-48204038 | Msa0644350:intron | 40.0% | |
| !! | ATAACGGACTAGAGTGTGTT+TGG | - | chr4_3:48204103-48204122 | None:intergenic | 40.0% |
| CCAGAATGAAGAGTTACAGA+GGG | - | chr4_3:48204146-48204165 | None:intergenic | 40.0% | |
| CAAAATCAGATAACCCTGTC+TGG | - | chr4_3:48204287-48204306 | None:intergenic | 40.0% | |
| GAGATGCTTTCATGATTGTG+TGG | + | chr4_3:48204352-48204371 | Msa0644350:CDS | 40.0% | |
| TAAATCCCTGCAAAAGCAAG+AGG | + | chr4_3:48204388-48204407 | Msa0644350:CDS | 40.0% | |
| ! | GATTTGGAGCTGATCGATCA+TGG | - | chr4_3:48200931-48200950 | None:intergenic | 45.0% |
| ACTTATGTTACCCCCCTCAA+AGG | + | chr4_3:48201019-48201038 | Msa0644350:intron | 45.0% | |
| CTTATGTTACCCCCCTCAAA+GGG | + | chr4_3:48201020-48201039 | Msa0644350:intron | 45.0% | |
| TTATGTTACCCCCCTCAAAG+GGG | + | chr4_3:48201021-48201040 | Msa0644350:intron | 45.0% | |
| ! | TAAATGTACCCCCTTTGAGG+GGG | - | chr4_3:48201033-48201052 | None:intergenic | 45.0% |
| !! | GACATTGGCTCTTATAGAGG+TGG | - | chr4_3:48201569-48201588 | None:intergenic | 45.0% |
| AAGGGAGCCGTTATAGACAT+TGG | - | chr4_3:48201584-48201603 | None:intergenic | 45.0% | |
| ATGAAACCACCAACGGGAAA+GGG | - | chr4_3:48201602-48201621 | None:intergenic | 45.0% | |
| AATGAAACCACCAACGGGAA+AGG | - | chr4_3:48201603-48201622 | None:intergenic | 45.0% | |
| CGATGAATGAAACCACCAAC+GGG | - | chr4_3:48201608-48201627 | None:intergenic | 45.0% | |
| ATACAGAGAGGGCTGTCTAT+AGG | - | chr4_3:48201661-48201680 | None:intergenic | 45.0% | |
| CGATGTAGGGTATGTTTGGA+TGG | + | chr4_3:48201711-48201730 | Msa0644350:intron | 45.0% | |
| TGTAGGGTATGTTTGGATGG+AGG | + | chr4_3:48201714-48201733 | Msa0644350:intron | 45.0% | |
| GTAGGGTATGTTTGGATGGA+GGG | + | chr4_3:48201715-48201734 | Msa0644350:intron | 45.0% | |
| !!! | TTTGGATGGAGGGTTTTGGA+GGG | + | chr4_3:48201725-48201744 | Msa0644350:intron | 45.0% |
| !! | TGAAGGGTTCTGGATGACTA+AGG | - | chr4_3:48201891-48201910 | None:intergenic | 45.0% |
| !! | AGGAGGTTTTTGAAGGGTTC+TGG | - | chr4_3:48201901-48201920 | None:intergenic | 45.0% |
| !!! | TTAAGGGTGTTTTCTGGAGG+AGG | - | chr4_3:48201918-48201937 | None:intergenic | 45.0% |
| !!! | AGCTTAAGGGTGTTTTCTGG+AGG | - | chr4_3:48201921-48201940 | None:intergenic | 45.0% |
| !!! | GAGAGCTTAAGGGTGTTTTC+TGG | - | chr4_3:48201924-48201943 | None:intergenic | 45.0% |
| AAAACACCCTTAAGCTCTCC+AGG | + | chr4_3:48201925-48201944 | Msa0644350:intron | 45.0% | |
| !!! | ACTAGTCTTTTGGGTTCTCC+TGG | - | chr4_3:48201946-48201965 | None:intergenic | 45.0% |
| !!! | GTGCTGTTTTTCGGTACCTT+TGG | + | chr4_3:48202565-48202584 | Msa0644350:intron | 45.0% |
| TGAAGCCATGAAAGGGGAAA+GGG | - | chr4_3:48202792-48202811 | None:intergenic | 45.0% | |
| ATGAAGCCATGAAAGGGGAA+AGG | - | chr4_3:48202793-48202812 | None:intergenic | 45.0% | |
| AACTTCGAGGCGTAAATCTG+GGG | - | chr4_3:48203063-48203082 | None:intergenic | 45.0% | |
| CAAACTTCGAGGCGTAAATC+TGG | - | chr4_3:48203065-48203084 | None:intergenic | 45.0% | |
| ATACTATGGCTTTCACCTGC+TGG | + | chr4_3:48203503-48203522 | Msa0644350:intron | 45.0% | |
| AATGAGTGAACCTGCCAAAG+GGG | - | chr4_3:48203541-48203560 | None:intergenic | 45.0% | |
| CAAATGAGTGAACCTGCCAA+AGG | - | chr4_3:48203543-48203562 | None:intergenic | 45.0% | |
| TGTTATGACTTGAGCCCACA+AGG | + | chr4_3:48203636-48203655 | Msa0644350:intron | 45.0% | |
| AAGTTGCCCTGGACAACTTA+TGG | + | chr4_3:48203829-48203848 | Msa0644350:intron | 45.0% | |
| GAAACACTTGTGAGACCGTT+TGG | - | chr4_3:48203918-48203937 | None:intergenic | 45.0% | |
| CCCTCTGTAACTCTTCATTC+TGG | + | chr4_3:48204143-48204162 | Msa0644350:intron | 45.0% | |
| GCCAGAATGAAGAGTTACAG+AGG | - | chr4_3:48204147-48204166 | None:intergenic | 45.0% | |
| !! | GGTTTCCTCTTGCTTTTGCA+GGG | - | chr4_3:48204396-48204415 | None:intergenic | 45.0% |
| !! | AGGTTTCCTCTTGCTTTTGC+AGG | - | chr4_3:48204397-48204416 | None:intergenic | 45.0% |
| ! | AATCTTGAGTTGCAGCTCCT+TGG | - | chr4_3:48204490-48204509 | None:intergenic | 45.0% |
| ATCAGCTCCAAATCCGTGAC+AGG | + | chr4_3:48200937-48200956 | Msa0644350:CDS | 50.0% | |
| AACCTCACCTGTCACGGATT+TGG | - | chr4_3:48200947-48200966 | None:intergenic | 50.0% | |
| TTTGGGAACCTCACCTGTCA+CGG | - | chr4_3:48200953-48200972 | None:intergenic | 50.0% | |
| TATGTTACCCCCCTCAAAGG+GGG | + | chr4_3:48201022-48201041 | Msa0644350:intron | 50.0% | |
| ! | AAATGTACCCCCTTTGAGGG+GGG | - | chr4_3:48201032-48201051 | None:intergenic | 50.0% |
| TAAGTTCATGAGCCGGGTCT+AGG | + | chr4_3:48201448-48201467 | Msa0644350:intron | 50.0% | |
| ! | ACTAGTCTATCGCCTAGACC+CGG | - | chr4_3:48201463-48201482 | None:intergenic | 50.0% |
| AGAGAGGGCTGTCTATAGGT+TGG | - | chr4_3:48201657-48201676 | None:intergenic | 50.0% | |
| !! | GTTTGGATGGAGGGTTTTGG+AGG | + | chr4_3:48201724-48201743 | Msa0644350:intron | 50.0% |
| !!! | TTGGATGGAGGGTTTTGGAG+GGG | + | chr4_3:48201726-48201745 | Msa0644350:intron | 50.0% |
| GGTTCTCCTGGAGAGCTTAA+GGG | - | chr4_3:48201934-48201953 | None:intergenic | 50.0% | |
| GGTGGTATTCCTTTCCCCTT+TGG | + | chr4_3:48203524-48203543 | Msa0644350:intron | 50.0% | |
| GTATTCCTTTCCCCTTTGGC+AGG | + | chr4_3:48203528-48203547 | Msa0644350:intron | 50.0% | |
| GAGACCGTTTGGGAGAACTA+AGG | - | chr4_3:48203907-48203926 | None:intergenic | 50.0% | |
| !! | CATGAAAGCATCTCTCCACC+AGG | - | chr4_3:48204346-48204365 | None:intergenic | 50.0% |
| CTCTGCACATCTTCGAACAC+AGG | - | chr4_3:48204417-48204436 | None:intergenic | 50.0% | |
| ! | CTGAAGCACTCTATGCGTGT+TGG | + | chr4_3:48204443-48204462 | Msa0644350:CDS | 50.0% |
| ! | ACTCTATGCGTGTTGGCATG+AGG | + | chr4_3:48204450-48204469 | Msa0644350:CDS | 50.0% |
| !! | AGGTTTGCTGAGCTCAACCA+AGG | + | chr4_3:48204470-48204489 | Msa0644350:CDS | 50.0% |
| GGAGCTGCAACTCAAGATTG+AGG | + | chr4_3:48204491-48204510 | Msa0644350:CDS | 50.0% | |
| CTCCAAATCCGTGACAGGTG+AGG | + | chr4_3:48200942-48200961 | Msa0644350:intron | 55.0% | |
| ATAACGGCTCCCTTTCCCGT+TGG | + | chr4_3:48201590-48201609 | Msa0644350:intron | 55.0% | |
| GGGTTCTCCTGGAGAGCTTA+AGG | - | chr4_3:48201935-48201954 | None:intergenic | 55.0% | |
| CTATGGCTTTCACCTGCTGG+TGG | + | chr4_3:48203506-48203525 | Msa0644350:intron | 55.0% | |
| GGGAAAGGAATACCACCAGC+AGG | - | chr4_3:48203521-48203540 | None:intergenic | 55.0% | |
| GTGAACCTGCCAAAGGGGAA+AGG | - | chr4_3:48203536-48203555 | None:intergenic | 55.0% | |
| !!! | GATGGAGGGTTTTGGAGGGG+AGG | + | chr4_3:48201729-48201748 | Msa0644350:intron | 60.0% |
| ACGGCTCCCTTTCCCGTTGG+TGG | + | chr4_3:48201593-48201612 | Msa0644350:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 48200744 | 48204737 | 48200744 | ID=Msa0644350;Name=Msa0644350 |
| chr4_3 | mRNA | 48200744 | 48204737 | 48200744 | ID=Msa0644350-mRNA-1;Parent=Msa0644350;Name=Msa0644350-mRNA-1;_AED=0.00;_eAED=0.00;_QI=120|1|1|1|1|1|2|226|93 |
| chr4_3 | exon | 48200744 | 48200958 | 48200744 | ID=Msa0644350-mRNA-1:exon:11411;Parent=Msa0644350-mRNA-1 |
| chr4_3 | exon | 48204325 | 48204737 | 48204325 | ID=Msa0644350-mRNA-1:exon:11412;Parent=Msa0644350-mRNA-1 |
| chr4_3 | five_prime_UTR | 48200744 | 48200863 | 48200744 | ID=Msa0644350-mRNA-1:five_prime_utr;Parent=Msa0644350-mRNA-1 |
| chr4_3 | CDS | 48200864 | 48200958 | 48200864 | ID=Msa0644350-mRNA-1:cds;Parent=Msa0644350-mRNA-1 |
| chr4_3 | CDS | 48204325 | 48204511 | 48204325 | ID=Msa0644350-mRNA-1:cds;Parent=Msa0644350-mRNA-1 |
| chr4_3 | three_prime_UTR | 48204512 | 48204737 | 48204512 | ID=Msa0644350-mRNA-1:three_prime_utr;Parent=Msa0644350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
