AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0232010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0232010 MtrunA17_Chr7g0263251 100.000 105 0 0 1 105 1 105 1.24e-71 208
Msa0232010 MtrunA17_Chr4g0050721 100.000 105 0 0 1 105 1 105 1.24e-71 208
Msa0232010 MtrunA17_Chr2g0278691 100.000 105 0 0 1 105 1 105 1.24e-71 208
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0232010 AT3G23390.1 92.381 105 8 0 1 105 1 105 1.05e-66 196
Msa0232010 AT4G14320.1 92.381 105 8 0 1 105 1 105 1.05e-66 196
Msa0232010 AT4G14320.2 91.398 93 8 0 1 93 1 93 3.44e-57 174

Find 58 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAAACTAGTGTGGAATTT+AGG 0.185779 2_2:-4327007 Msa0232010:three_prime_UTR
TCTCTTCTAGGTGGAGAATT+AGG 0.245518 2_2:-4327318 Msa0232010:exon
ATCTTTACCCTTCTTGTATT+GGG 0.247979 2_2:+4328196 None:intergenic
CCATTGTTGTTGAAATGTTT+TGG 0.281419 2_2:-4327270 Msa0232010:three_prime_UTR
TATCTTTACCCTTCTTGTAT+TGG 0.312780 2_2:+4328195 None:intergenic
CACATATGTTTGTAGGGAAA+TGG 0.350911 2_2:-4326906 Msa0232010:three_prime_UTR
TTGGGGAAATCAAGGTGATT+GGG 0.367665 2_2:-4326870 Msa0232010:three_prime_UTR
AAATGGTTTGTGTGTATTGT+TGG 0.370801 2_2:-4326889 Msa0232010:three_prime_UTR
CAAGGGAACTTCTCTCTTCT+AGG 0.380957 2_2:-4327330 Msa0232010:exon
TGTTGAACACATATGTTTGT+AGG 0.381230 2_2:-4326913 Msa0232010:three_prime_UTR
GATCGCAAACAGTCTGGTTA+TGG 0.387570 2_2:-4328143 Msa0232010:CDS
AATGGTTTGTGTGTATTGTT+GGG 0.389029 2_2:-4326888 Msa0232010:three_prime_UTR
AAAATCATCAAAGGAATTCA+AGG 0.412835 2_2:+4327158 None:intergenic
TGTTCTGAGGTTGCAATGCC+AGG 0.414173 2_2:-4327540 Msa0232010:CDS
CATGGTGACGGCGCGTGGAT+TGG 0.425073 2_2:+4328372 None:intergenic
GTTGGGGAAATCAAGGTGAT+TGG 0.436724 2_2:-4326871 Msa0232010:three_prime_UTR
GCATTCCTTGCTCTTGCAGT+AGG 0.441918 2_2:+4328244 None:intergenic
TTTAAGTTTCTGTGTTAATG+TGG 0.446453 2_2:-4326984 Msa0232010:three_prime_UTR
TGAGATTGGTGGTGATAAGA+AGG 0.451732 2_2:-4327354 Msa0232010:CDS
GGGAAAGTCGGTGATTGAAT+TGG 0.463252 2_2:-4326962 Msa0232010:three_prime_UTR
CGTTACGATCGCAAACAGTC+TGG 0.464861 2_2:-4328149 Msa0232010:CDS
TTAAGTTTCTGTGTTAATGT+GGG 0.465340 2_2:-4326983 Msa0232010:three_prime_UTR
TGTTTCTCAACATGCAATCA+AGG 0.468902 2_2:-4327507 Msa0232010:intron
GTTGAACACATATGTTTGTA+GGG 0.469153 2_2:-4326912 Msa0232010:three_prime_UTR
TGGGGAAATCAAGGTGATTG+GGG 0.489090 2_2:-4326869 Msa0232010:three_prime_UTR
TCATTTCCTCTAGTTTGTGT+TGG 0.490345 2_2:-4327070 Msa0232010:three_prime_UTR
GTTACCTTCTTGTGAAAGAC+GGG 0.495280 2_2:+4328107 None:intergenic
GAGAAACATGCTTGCAACCC+TGG 0.514679 2_2:+4327522 None:intergenic
GAGATTGGTGGTGATAAGAA+GGG 0.526133 2_2:-4327353 Msa0232010:CDS
GTGTATTGTTGGGGAAATCA+AGG 0.538232 2_2:-4326878 Msa0232010:three_prime_UTR
CAAGGTTACCCAATACAAGA+AGG 0.553515 2_2:-4328204 Msa0232010:CDS
CGCAAACAGTCTGGTTATGG+TGG 0.554816 2_2:-4328140 Msa0232010:CDS
TGGTGGTGATAAGAAGGGCA+AGG 0.556388 2_2:-4327348 Msa0232010:CDS
CCAAAACATTTCAACAACAA+TGG 0.558543 2_2:+4327270 None:intergenic
TAAGTTTCTGTGTTAATGTG+GGG 0.560887 2_2:-4326982 Msa0232010:three_prime_UTR
TTTCAATTTACCGAACATTG+TGG 0.561609 2_2:+4327024 None:intergenic
GTTACCGTCTCCACAATGTT+CGG 0.561933 2_2:-4327034 Msa0232010:three_prime_UTR
ATTACCATGGTGACGGCGCG+TGG 0.569167 2_2:+4328367 None:intergenic
AAAGATAGCATCGCCGCTCA+AGG 0.571046 2_2:-4328179 Msa0232010:CDS
AGTTACCTTCTTGTGAAAGA+CGG 0.572609 2_2:+4328106 None:intergenic
CAAGAAGCATACACTTCACA+AGG 0.596444 2_2:-4328222 Msa0232010:CDS
TGTGTTAATGTGGGGAAAGT+CGG 0.596962 2_2:-4326974 Msa0232010:three_prime_UTR
AAAATGGAGCGATGAAGCAA+TGG 0.600572 2_2:+4328425 None:intergenic
TTTACCGAACATTGTGGAGA+CGG 0.600929 2_2:+4327030 None:intergenic
GAAAACCTACTGCAAGAGCA+AGG 0.601503 2_2:-4328249 Msa0232010:CDS
CAATCCACGCGCCGTCACCA+TGG 0.602128 2_2:-4328371 Msa0232010:intron
CCACTAAGAAAATTGTTCTG+AGG 0.602363 2_2:-4327553 Msa0232010:CDS
TAAGCCCGTCTTTCACAAGA+AGG 0.606865 2_2:-4328111 Msa0232010:intron
ATGGTTTGTGTGTATTGTTG+GGG 0.618518 2_2:-4326887 Msa0232010:three_prime_UTR
TCGGTAAATTGAAACTAGTG+TGG 0.628118 2_2:-4327015 Msa0232010:three_prime_UTR
AAGGTTACCCAATACAAGAA+GGG 0.630634 2_2:-4328203 Msa0232010:CDS
GGTGGTGATAAGAAGGGCAA+GGG 0.630826 2_2:-4327347 Msa0232010:CDS
GTAACGACGCTTACCTTGAG+CGG 0.638526 2_2:+4328166 None:intergenic
GTTCTGAGGTTGCAATGCCA+GGG 0.641034 2_2:-4327539 Msa0232010:CDS
GGAGATGATTACCATGGTGA+CGG 0.643982 2_2:+4328360 None:intergenic
GGGAACTTCTCTCTTCTAGG+TGG 0.678633 2_2:-4327327 Msa0232010:exon
TTAACACCAACACAAACTAG+AGG 0.679173 2_2:+4327064 None:intergenic
GCGCGTGGATTGGATCTGAG+AGG 0.710537 2_2:+4328382 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAAAATCTTTTATCATT+TGG - chr2_2:4328174-4328193 Msa0232010:CDS 10.0%
!!! TTAAAAATCTTTTATCATTT+GGG - chr2_2:4328175-4328194 Msa0232010:CDS 10.0%
!!! TTTAAAAATCTTTTATCATT+TGG - chr2_2:4328174-4328193 Msa0232010:CDS 10.0%
!!! TTAAAAATCTTTTATCATTT+GGG - chr2_2:4328175-4328194 Msa0232010:CDS 10.0%
!!! TGATTTTTTTTTTAGTTGAA+TGG - chr2_2:4327686-4327705 Msa0232010:intron 15.0%
!!! ATTTAATTTTTGTTTGTGTT+TGG - chr2_2:4327716-4327735 Msa0232010:intron 15.0%
!!! AAGATTTTTAAAATCATCAA+AGG + chr2_2:4328166-4328185 None:intergenic 15.0%
!!! ATCTAATTTTATCATAACAA+TGG + chr2_2:4328216-4328235 None:intergenic 15.0%
!!! TGATTTTTTTTTTAGTTGAA+TGG - chr2_2:4327686-4327705 Msa0232010:intron 15.0%
!!! ATTTAATTTTTGTTTGTGTT+TGG - chr2_2:4327716-4327735 Msa0232010:intron 15.0%
!!! AAGATTTTTAAAATCATCAA+AGG + chr2_2:4328166-4328185 None:intergenic 15.0%
!!! ATCTAATTTTATCATAACAA+TGG + chr2_2:4328216-4328235 None:intergenic 15.0%
!! AAATGTATAAAAGTAATGAG+GGG + chr2_2:4327243-4327262 None:intergenic 20.0%
!! GAAATGTATAAAAGTAATGA+GGG + chr2_2:4327244-4327263 None:intergenic 20.0%
!! TGAAATGTATAAAAGTAATG+AGG + chr2_2:4327245-4327264 None:intergenic 20.0%
!! CTTACAATCAACTAAAAAAA+TGG + chr2_2:4327287-4327306 None:intergenic 20.0%
!! GAATGCAAAAAATTCAAATT+TGG - chr2_2:4327610-4327629 Msa0232010:intron 20.0%
!!! CAGAAATTTTATTTTGTAGA+TGG - chr2_2:4327867-4327886 Msa0232010:intron 20.0%
!!! TTTTATTTTGTAGATGGATA+TGG - chr2_2:4327873-4327892 Msa0232010:intron 20.0%
!! AAATGTATAAAAGTAATGAG+GGG + chr2_2:4327243-4327262 None:intergenic 20.0%
!! GAAATGTATAAAAGTAATGA+GGG + chr2_2:4327244-4327263 None:intergenic 20.0%
!! TGAAATGTATAAAAGTAATG+AGG + chr2_2:4327245-4327264 None:intergenic 20.0%
!! CTTACAATCAACTAAAAAAA+TGG + chr2_2:4327287-4327306 None:intergenic 20.0%
!! GAATGCAAAAAATTCAAATT+TGG - chr2_2:4327610-4327629 Msa0232010:intron 20.0%
!!! CAGAAATTTTATTTTGTAGA+TGG - chr2_2:4327867-4327886 Msa0232010:intron 20.0%
!!! TTTTATTTTGTAGATGGATA+TGG - chr2_2:4327873-4327892 Msa0232010:intron 20.0%
! TGATATAATTACGATTACGT+AGG + chr2_2:4326990-4327009 None:intergenic 25.0%
! GAAAATCCAACATCAAAAAA+GGG + chr2_2:4327021-4327040 None:intergenic 25.0%
! TGAAAATCCAACATCAAAAA+AGG + chr2_2:4327022-4327041 None:intergenic 25.0%
!!! TTTTTTGATGTTGGATTTTC+AGG - chr2_2:4327021-4327040 Msa0232010:three_prime_UTR 25.0%
! AATGTATAAAAGTAATGAGG+GGG + chr2_2:4327242-4327261 None:intergenic 25.0%
!!! TTAGCTTTATGCAAATGATT+AGG - chr2_2:4327367-4327386 Msa0232010:CDS 25.0%
!!! TAGCTTTATGCAAATGATTA+GGG - chr2_2:4327368-4327387 Msa0232010:CDS 25.0%
! TGGATTCAAATATGGTTAAT+AGG - chr2_2:4327411-4327430 Msa0232010:intron 25.0%
!!! TGTGTTTGGTTTTATTGTAT+AGG - chr2_2:4327730-4327749 Msa0232010:intron 25.0%
! ATATGGTTGTTTGTATCTAA+TGG - chr2_2:4327890-4327909 Msa0232010:intron 25.0%
! AAAATCATCAAAGGAATTCA+AGG + chr2_2:4328157-4328176 None:intergenic 25.0%
!! TTTAAGTTTCTGTGTTAATG+TGG - chr2_2:4328328-4328347 Msa0232010:intron 25.0%
! TTAAGTTTCTGTGTTAATGT+GGG - chr2_2:4328329-4328348 Msa0232010:intron 25.0%
! TGATATAATTACGATTACGT+AGG + chr2_2:4326990-4327009 None:intergenic 25.0%
! GAAAATCCAACATCAAAAAA+GGG + chr2_2:4327021-4327040 None:intergenic 25.0%
! TGAAAATCCAACATCAAAAA+AGG + chr2_2:4327022-4327041 None:intergenic 25.0%
!!! TTTTTTGATGTTGGATTTTC+AGG - chr2_2:4327021-4327040 Msa0232010:three_prime_UTR 25.0%
! AATGTATAAAAGTAATGAGG+GGG + chr2_2:4327242-4327261 None:intergenic 25.0%
!!! TTAGCTTTATGCAAATGATT+AGG - chr2_2:4327367-4327386 Msa0232010:CDS 25.0%
!!! TAGCTTTATGCAAATGATTA+GGG - chr2_2:4327368-4327387 Msa0232010:CDS 25.0%
! TGGATTCAAATATGGTTAAT+AGG - chr2_2:4327411-4327430 Msa0232010:intron 25.0%
!!! TGTGTTTGGTTTTATTGTAT+AGG - chr2_2:4327730-4327749 Msa0232010:intron 25.0%
! ATATGGTTGTTTGTATCTAA+TGG - chr2_2:4327890-4327909 Msa0232010:intron 25.0%
! AAAATCATCAAAGGAATTCA+AGG + chr2_2:4328157-4328176 None:intergenic 25.0%
!! TTTAAGTTTCTGTGTTAATG+TGG - chr2_2:4328328-4328347 Msa0232010:intron 25.0%
! TTAAGTTTCTGTGTTAATGT+GGG - chr2_2:4328329-4328348 Msa0232010:intron 25.0%
!! AAGCAATGGTTTGTGTTTTA+TGG + chr2_2:4326876-4326895 None:intergenic 30.0%
ATCTTTACCCTTCTTGTATT+GGG + chr2_2:4327119-4327138 None:intergenic 30.0%
TATCTTTACCCTTCTTGTAT+TGG + chr2_2:4327120-4327139 None:intergenic 30.0%
GGTTAATAGGAAGAACATTA+TGG - chr2_2:4327424-4327443 Msa0232010:intron 30.0%
! TTTTGAGCTGAATGTGAAAT+TGG - chr2_2:4327523-4327542 Msa0232010:CDS 30.0%
CCAAAACATTTCAACAACAA+TGG + chr2_2:4328045-4328064 None:intergenic 30.0%
!! CCATTGTTGTTGAAATGTTT+TGG - chr2_2:4328042-4328061 Msa0232010:intron 30.0%
!!! TGAAATGTTTTGGTTCTCTA+TGG - chr2_2:4328052-4328071 Msa0232010:intron 30.0%
TTTCAATTTACCGAACATTG+TGG + chr2_2:4328291-4328310 None:intergenic 30.0%
TTGAAACTAGTGTGGAATTT+AGG - chr2_2:4328305-4328324 Msa0232010:intron 30.0%
TAAGTTTCTGTGTTAATGTG+GGG - chr2_2:4328330-4328349 Msa0232010:intron 30.0%
TGTTGAACACATATGTTTGT+AGG - chr2_2:4328399-4328418 Msa0232010:five_prime_UTR 30.0%
GTTGAACACATATGTTTGTA+GGG - chr2_2:4328400-4328419 Msa0232010:five_prime_UTR 30.0%
! AAATGGTTTGTGTGTATTGT+TGG - chr2_2:4328423-4328442 Msa0232010:five_prime_UTR 30.0%
! AATGGTTTGTGTGTATTGTT+GGG - chr2_2:4328424-4328443 Msa0232010:five_prime_UTR 30.0%
!! AAGCAATGGTTTGTGTTTTA+TGG + chr2_2:4326876-4326895 None:intergenic 30.0%
ATCTTTACCCTTCTTGTATT+GGG + chr2_2:4327119-4327138 None:intergenic 30.0%
TATCTTTACCCTTCTTGTAT+TGG + chr2_2:4327120-4327139 None:intergenic 30.0%
GGTTAATAGGAAGAACATTA+TGG - chr2_2:4327424-4327443 Msa0232010:intron 30.0%
! TTTTGAGCTGAATGTGAAAT+TGG - chr2_2:4327523-4327542 Msa0232010:CDS 30.0%
CCAAAACATTTCAACAACAA+TGG + chr2_2:4328045-4328064 None:intergenic 30.0%
!! CCATTGTTGTTGAAATGTTT+TGG - chr2_2:4328042-4328061 Msa0232010:intron 30.0%
!!! TGAAATGTTTTGGTTCTCTA+TGG - chr2_2:4328052-4328071 Msa0232010:intron 30.0%
TTTCAATTTACCGAACATTG+TGG + chr2_2:4328291-4328310 None:intergenic 30.0%
TTGAAACTAGTGTGGAATTT+AGG - chr2_2:4328305-4328324 Msa0232010:intron 30.0%
TAAGTTTCTGTGTTAATGTG+GGG - chr2_2:4328330-4328349 Msa0232010:intron 30.0%
TGTTGAACACATATGTTTGT+AGG - chr2_2:4328399-4328418 Msa0232010:five_prime_UTR 30.0%
GTTGAACACATATGTTTGTA+GGG - chr2_2:4328400-4328419 Msa0232010:five_prime_UTR 30.0%
! AAATGGTTTGTGTGTATTGT+TGG - chr2_2:4328423-4328442 Msa0232010:five_prime_UTR 30.0%
! AATGGTTTGTGTGTATTGTT+GGG - chr2_2:4328424-4328443 Msa0232010:five_prime_UTR 30.0%
!!! GCTAAACCCTTTTTTGATGT+TGG - chr2_2:4327012-4327031 Msa0232010:three_prime_UTR 35.0%
! CAGTAGGTTTTCTTTGTCTT+TGG + chr2_2:4327055-4327074 None:intergenic 35.0%
AAGGTTACCCAATACAAGAA+GGG - chr2_2:4327109-4327128 Msa0232010:three_prime_UTR 35.0%
AGTTACCTTCTTGTGAAAGA+CGG + chr2_2:4327209-4327228 None:intergenic 35.0%
AGGGAAGATTTAGAGATTGA+TGG - chr2_2:4327387-4327406 Msa0232010:intron 35.0%
! AAGATTTAGAGATTGATGGC+TGG - chr2_2:4327391-4327410 Msa0232010:intron 35.0%
! TTGATGGCTGGATTCAAATA+TGG - chr2_2:4327403-4327422 Msa0232010:intron 35.0%
! CTTATATCACTAAGTGGGTT+TGG + chr2_2:4327469-4327488 None:intergenic 35.0%
CAAACCCACTTAGTGATATA+AGG - chr2_2:4327467-4327486 Msa0232010:intron 35.0%
! CAAGCCTTATATCACTAAGT+GGG + chr2_2:4327474-4327493 None:intergenic 35.0%
! CCTCAGAACAATTTTCTTAG+TGG + chr2_2:4327762-4327781 None:intergenic 35.0%
CCACTAAGAAAATTGTTCTG+AGG - chr2_2:4327759-4327778 Msa0232010:intron 35.0%
TGTTTCTCAACATGCAATCA+AGG - chr2_2:4327805-4327824 Msa0232010:intron 35.0%
! TCATTTCCTCTAGTTTGTGT+TGG - chr2_2:4328242-4328261 Msa0232010:CDS 35.0%
TTAACACCAACACAAACTAG+AGG + chr2_2:4328251-4328270 None:intergenic 35.0%
TCGGTAAATTGAAACTAGTG+TGG - chr2_2:4328297-4328316 Msa0232010:intron 35.0%
CACATATGTTTGTAGGGAAA+TGG - chr2_2:4328406-4328425 Msa0232010:five_prime_UTR 35.0%
! ATGGTTTGTGTGTATTGTTG+GGG - chr2_2:4328425-4328444 Msa0232010:five_prime_UTR 35.0%
!!! GCTAAACCCTTTTTTGATGT+TGG - chr2_2:4327012-4327031 Msa0232010:three_prime_UTR 35.0%
! CAGTAGGTTTTCTTTGTCTT+TGG + chr2_2:4327055-4327074 None:intergenic 35.0%
AAGGTTACCCAATACAAGAA+GGG - chr2_2:4327109-4327128 Msa0232010:three_prime_UTR 35.0%
AGTTACCTTCTTGTGAAAGA+CGG + chr2_2:4327209-4327228 None:intergenic 35.0%
AGGGAAGATTTAGAGATTGA+TGG - chr2_2:4327387-4327406 Msa0232010:intron 35.0%
! AAGATTTAGAGATTGATGGC+TGG - chr2_2:4327391-4327410 Msa0232010:intron 35.0%
! TTGATGGCTGGATTCAAATA+TGG - chr2_2:4327403-4327422 Msa0232010:intron 35.0%
! CTTATATCACTAAGTGGGTT+TGG + chr2_2:4327469-4327488 None:intergenic 35.0%
CAAACCCACTTAGTGATATA+AGG - chr2_2:4327467-4327486 Msa0232010:intron 35.0%
! CAAGCCTTATATCACTAAGT+GGG + chr2_2:4327474-4327493 None:intergenic 35.0%
! CCTCAGAACAATTTTCTTAG+TGG + chr2_2:4327762-4327781 None:intergenic 35.0%
CCACTAAGAAAATTGTTCTG+AGG - chr2_2:4327759-4327778 Msa0232010:intron 35.0%
TGTTTCTCAACATGCAATCA+AGG - chr2_2:4327805-4327824 Msa0232010:intron 35.0%
! TCATTTCCTCTAGTTTGTGT+TGG - chr2_2:4328242-4328261 Msa0232010:CDS 35.0%
TTAACACCAACACAAACTAG+AGG + chr2_2:4328251-4328270 None:intergenic 35.0%
TCGGTAAATTGAAACTAGTG+TGG - chr2_2:4328297-4328316 Msa0232010:intron 35.0%
CACATATGTTTGTAGGGAAA+TGG - chr2_2:4328406-4328425 Msa0232010:five_prime_UTR 35.0%
! ATGGTTTGTGTGTATTGTTG+GGG - chr2_2:4328425-4328444 Msa0232010:five_prime_UTR 35.0%
AAAATGGAGCGATGAAGCAA+TGG + chr2_2:4326890-4326909 None:intergenic 40.0%
!! AGTTTTGTGCGCAGTGAAAA+TGG + chr2_2:4326906-4326925 None:intergenic 40.0%
! CAAGAAGCATACACTTCACA+AGG - chr2_2:4327090-4327109 Msa0232010:three_prime_UTR 40.0%
CAAGGTTACCCAATACAAGA+AGG - chr2_2:4327108-4327127 Msa0232010:three_prime_UTR 40.0%
GTTACCTTCTTGTGAAAGAC+GGG + chr2_2:4327208-4327227 None:intergenic 40.0%
! CCAAGCCTTATATCACTAAG+TGG + chr2_2:4327475-4327494 None:intergenic 40.0%
CCACTTAGTGATATAAGGCT+TGG - chr2_2:4327472-4327491 Msa0232010:intron 40.0%
! GTTGTGTTTCTGTTATGCAG+AGG - chr2_2:4327924-4327943 Msa0232010:intron 40.0%
!!! AGGTGCAAGCATTTTGAGAT+TGG - chr2_2:4327944-4327963 Msa0232010:intron 40.0%
!!! TGCAAGCATTTTGAGATTGG+TGG - chr2_2:4327947-4327966 Msa0232010:intron 40.0%
!! TGAGATTGGTGGTGATAAGA+AGG - chr2_2:4327958-4327977 Msa0232010:intron 40.0%
!! GAGATTGGTGGTGATAAGAA+GGG - chr2_2:4327959-4327978 Msa0232010:intron 40.0%
TCTCTTCTAGGTGGAGAATT+AGG - chr2_2:4327994-4328013 Msa0232010:intron 40.0%
TTTACCGAACATTGTGGAGA+CGG + chr2_2:4328285-4328304 None:intergenic 40.0%
TGTGTTAATGTGGGGAAAGT+CGG - chr2_2:4328338-4328357 Msa0232010:intron 40.0%
GTGTATTGTTGGGGAAATCA+AGG - chr2_2:4328434-4328453 Msa0232010:five_prime_UTR 40.0%
TTGGGGAAATCAAGGTGATT+GGG - chr2_2:4328442-4328461 Msa0232010:five_prime_UTR 40.0%
AAAATGGAGCGATGAAGCAA+TGG + chr2_2:4326890-4326909 None:intergenic 40.0%
!! AGTTTTGTGCGCAGTGAAAA+TGG + chr2_2:4326906-4326925 None:intergenic 40.0%
! CAAGAAGCATACACTTCACA+AGG - chr2_2:4327090-4327109 Msa0232010:three_prime_UTR 40.0%
CAAGGTTACCCAATACAAGA+AGG - chr2_2:4327108-4327127 Msa0232010:three_prime_UTR 40.0%
GTTACCTTCTTGTGAAAGAC+GGG + chr2_2:4327208-4327227 None:intergenic 40.0%
! CCAAGCCTTATATCACTAAG+TGG + chr2_2:4327475-4327494 None:intergenic 40.0%
CCACTTAGTGATATAAGGCT+TGG - chr2_2:4327472-4327491 Msa0232010:intron 40.0%
! GTTGTGTTTCTGTTATGCAG+AGG - chr2_2:4327924-4327943 Msa0232010:intron 40.0%
!!! AGGTGCAAGCATTTTGAGAT+TGG - chr2_2:4327944-4327963 Msa0232010:intron 40.0%
!!! TGCAAGCATTTTGAGATTGG+TGG - chr2_2:4327947-4327966 Msa0232010:intron 40.0%
!! TGAGATTGGTGGTGATAAGA+AGG - chr2_2:4327958-4327977 Msa0232010:intron 40.0%
!! GAGATTGGTGGTGATAAGAA+GGG - chr2_2:4327959-4327978 Msa0232010:intron 40.0%
TCTCTTCTAGGTGGAGAATT+AGG - chr2_2:4327994-4328013 Msa0232010:intron 40.0%
TTTACCGAACATTGTGGAGA+CGG + chr2_2:4328285-4328304 None:intergenic 40.0%
TGTGTTAATGTGGGGAAAGT+CGG - chr2_2:4328338-4328357 Msa0232010:intron 40.0%
GTGTATTGTTGGGGAAATCA+AGG - chr2_2:4328434-4328453 Msa0232010:five_prime_UTR 40.0%
TTGGGGAAATCAAGGTGATT+GGG - chr2_2:4328442-4328461 Msa0232010:five_prime_UTR 40.0%
GGAGATGATTACCATGGTGA+CGG + chr2_2:4326955-4326974 None:intergenic 45.0%
CGATTACGTAGGAACAGACA+CGG + chr2_2:4326979-4326998 None:intergenic 45.0%
GAAAACCTACTGCAAGAGCA+AGG - chr2_2:4327063-4327082 Msa0232010:three_prime_UTR 45.0%
GATCGCAAACAGTCTGGTTA+TGG - chr2_2:4327169-4327188 Msa0232010:three_prime_UTR 45.0%
TAAGCCCGTCTTTCACAAGA+AGG - chr2_2:4327201-4327220 Msa0232010:three_prime_UTR 45.0%
AAGTAATGAGGGGGTGAAGT+GGG + chr2_2:4327233-4327252 None:intergenic 45.0%
AAAGTAATGAGGGGGTGAAG+TGG + chr2_2:4327234-4327253 None:intergenic 45.0%
CAAGGGAACTTCTCTCTTCT+AGG - chr2_2:4327982-4328001 Msa0232010:intron 45.0%
GTTACCGTCTCCACAATGTT+CGG - chr2_2:4328278-4328297 Msa0232010:intron 45.0%
GGGAAAGTCGGTGATTGAAT+TGG - chr2_2:4328350-4328369 Msa0232010:intron 45.0%
GTTGGGGAAATCAAGGTGAT+TGG - chr2_2:4328441-4328460 Msa0232010:five_prime_UTR 45.0%
TGGGGAAATCAAGGTGATTG+GGG - chr2_2:4328443-4328462 Msa0232010:five_prime_UTR 45.0%
GGAGATGATTACCATGGTGA+CGG + chr2_2:4326955-4326974 None:intergenic 45.0%
CGATTACGTAGGAACAGACA+CGG + chr2_2:4326979-4326998 None:intergenic 45.0%
GAAAACCTACTGCAAGAGCA+AGG - chr2_2:4327063-4327082 Msa0232010:three_prime_UTR 45.0%
GATCGCAAACAGTCTGGTTA+TGG - chr2_2:4327169-4327188 Msa0232010:three_prime_UTR 45.0%
TAAGCCCGTCTTTCACAAGA+AGG - chr2_2:4327201-4327220 Msa0232010:three_prime_UTR 45.0%
AAGTAATGAGGGGGTGAAGT+GGG + chr2_2:4327233-4327252 None:intergenic 45.0%
AAAGTAATGAGGGGGTGAAG+TGG + chr2_2:4327234-4327253 None:intergenic 45.0%
CAAGGGAACTTCTCTCTTCT+AGG - chr2_2:4327982-4328001 Msa0232010:intron 45.0%
GTTACCGTCTCCACAATGTT+CGG - chr2_2:4328278-4328297 Msa0232010:intron 45.0%
GGGAAAGTCGGTGATTGAAT+TGG - chr2_2:4328350-4328369 Msa0232010:intron 45.0%
GTTGGGGAAATCAAGGTGAT+TGG - chr2_2:4328441-4328460 Msa0232010:five_prime_UTR 45.0%
CACGGTGGAGATGATTACCA+TGG + chr2_2:4326961-4326980 None:intergenic 50.0%
TTACGTAGGAACAGACACGG+TGG + chr2_2:4326976-4326995 None:intergenic 50.0%
GCATTCCTTGCTCTTGCAGT+AGG + chr2_2:4327071-4327090 None:intergenic 50.0%
AAAGATAGCATCGCCGCTCA+AGG - chr2_2:4327133-4327152 Msa0232010:three_prime_UTR 50.0%
GTAACGACGCTTACCTTGAG+CGG + chr2_2:4327149-4327168 None:intergenic 50.0%
CGTTACGATCGCAAACAGTC+TGG - chr2_2:4327163-4327182 Msa0232010:three_prime_UTR 50.0%
CGCAAACAGTCTGGTTATGG+TGG - chr2_2:4327172-4327191 Msa0232010:three_prime_UTR 50.0%
!! TGTTCTGAGGTTGCAATGCC+AGG - chr2_2:4327772-4327791 Msa0232010:intron 50.0%
!! GTTCTGAGGTTGCAATGCCA+GGG - chr2_2:4327773-4327792 Msa0232010:intron 50.0%
GAGAAACATGCTTGCAACCC+TGG + chr2_2:4327793-4327812 None:intergenic 50.0%
! TGGTGGTGATAAGAAGGGCA+AGG - chr2_2:4327964-4327983 Msa0232010:intron 50.0%
GGTGGTGATAAGAAGGGCAA+GGG - chr2_2:4327965-4327984 Msa0232010:intron 50.0%
GGGAACTTCTCTCTTCTAGG+TGG - chr2_2:4327985-4328004 Msa0232010:intron 50.0%
CACGGTGGAGATGATTACCA+TGG + chr2_2:4326961-4326980 None:intergenic 50.0%
TTACGTAGGAACAGACACGG+TGG + chr2_2:4326976-4326995 None:intergenic 50.0%
GCATTCCTTGCTCTTGCAGT+AGG + chr2_2:4327071-4327090 None:intergenic 50.0%
AAAGATAGCATCGCCGCTCA+AGG - chr2_2:4327133-4327152 Msa0232010:three_prime_UTR 50.0%
GTAACGACGCTTACCTTGAG+CGG + chr2_2:4327149-4327168 None:intergenic 50.0%
CGTTACGATCGCAAACAGTC+TGG - chr2_2:4327163-4327182 Msa0232010:three_prime_UTR 50.0%
CGCAAACAGTCTGGTTATGG+TGG - chr2_2:4327172-4327191 Msa0232010:three_prime_UTR 50.0%
!! TGTTCTGAGGTTGCAATGCC+AGG - chr2_2:4327772-4327791 Msa0232010:intron 50.0%
!! GTTCTGAGGTTGCAATGCCA+GGG - chr2_2:4327773-4327792 Msa0232010:intron 50.0%
GAGAAACATGCTTGCAACCC+TGG + chr2_2:4327793-4327812 None:intergenic 50.0%
! TGGTGGTGATAAGAAGGGCA+AGG - chr2_2:4327964-4327983 Msa0232010:intron 50.0%
GGTGGTGATAAGAAGGGCAA+GGG - chr2_2:4327965-4327984 Msa0232010:intron 50.0%
GGGAACTTCTCTCTTCTAGG+TGG - chr2_2:4327985-4328004 Msa0232010:intron 50.0%
!! GCGCGTGGATTGGATCTGAG+AGG + chr2_2:4326933-4326952 None:intergenic 60.0%
!! ATTACCATGGTGACGGCGCG+TGG + chr2_2:4326948-4326967 None:intergenic 60.0%
!! GCGCGTGGATTGGATCTGAG+AGG + chr2_2:4326933-4326952 None:intergenic 60.0%
!! ATTACCATGGTGACGGCGCG+TGG + chr2_2:4326948-4326967 None:intergenic 60.0%
!! CATGGTGACGGCGCGTGGAT+TGG + chr2_2:4326943-4326962 None:intergenic 65.0%
CAATCCACGCGCCGTCACCA+TGG - chr2_2:4326941-4326960 Msa0232010:three_prime_UTR 65.0%
!! CATGGTGACGGCGCGTGGAT+TGG + chr2_2:4326943-4326962 None:intergenic 65.0%
CAATCCACGCGCCGTCACCA+TGG - chr2_2:4326941-4326960 Msa0232010:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 4326869 4328465 4326869 ID=Msa0232010;Name=Msa0232010
chr2_2 mRNA 4326869 4328465 4326869 ID=Msa0232010-mRNA-1;Parent=Msa0232010;Name=Msa0232010-mRNA-1;_AED=0.09;_eAED=0.09;_QI=91|1|1|1|0.66|0.75|4|462|105
chr2_2 exon 4326869 4327390 4326869 ID=Msa0232010-mRNA-1:exon:1794;Parent=Msa0232010-mRNA-1
chr2_2 exon 4327508 4327582 4327508 ID=Msa0232010-mRNA-1:exon:1793;Parent=Msa0232010-mRNA-1
chr2_2 exon 4328112 4328291 4328112 ID=Msa0232010-mRNA-1:exon:1792;Parent=Msa0232010-mRNA-1
chr2_2 exon 4328372 4328465 4328372 ID=Msa0232010-mRNA-1:exon:1791;Parent=Msa0232010-mRNA-1
chr2_2 five_prime_UTR 4328375 4328465 4328375 ID=Msa0232010-mRNA-1:five_prime_utr;Parent=Msa0232010-mRNA-1
chr2_2 CDS 4328372 4328374 4328372 ID=Msa0232010-mRNA-1:cds;Parent=Msa0232010-mRNA-1
chr2_2 CDS 4328112 4328291 4328112 ID=Msa0232010-mRNA-1:cds;Parent=Msa0232010-mRNA-1
chr2_2 CDS 4327508 4327582 4327508 ID=Msa0232010-mRNA-1:cds;Parent=Msa0232010-mRNA-1
chr2_2 CDS 4327331 4327390 4327331 ID=Msa0232010-mRNA-1:cds;Parent=Msa0232010-mRNA-1
chr2_2 three_prime_UTR 4326869 4327330 4326869 ID=Msa0232010-mRNA-1:three_prime_utr;Parent=Msa0232010-mRNA-1
Gene Sequence

>Msa0232010

ATGGTGAACGTTCCAAAGACAAAGAAAACCTACTGCAAGAGCAAGGAATGCAAGAAGCATACACTTCACAAGGTTACCCAATACAAGAAGGGTAAAGATAGCATCGCCGCTCAAGGTAAGCGTCGTTACGATCGCAAACAGTCTGGTTATGGTGGTCAGACTAAGCCCGTCTTTCACAAGAAGGCAAAAACCACTAAGAAAATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTTTCTCAACATGCAATCAAGAGGTGCAAGCATTTTGAGATTGGTGGTGATAAGAAGGGCAAGGGAACTTCTCTCTTCTAG

Protein sequence

>Msa0232010

MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF*