AlfalfaGEDB | Msa1366180

M. sativa cultivar zhongmu-4 / Msa1366180

KEGG: K02875
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0012505 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF01929.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1366180	XP_003590835.1	82.707	133	1	1	19	129	1	133	1.43e-66	207

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1366180	sp\|P55844\|RL14_PEA	75.188	133	11	1	19	129	1	133	1.89e-63	192

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1366180	G7I4V0	82.707	133	1	1	19	129	1	133	6.83e-67	207

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000100	Msa1366180	0.815046	1.129652e-51	-8.615850e-47
Msa0002750	Msa1366180	0.918176	2.152691e-86	-8.615850e-47
Msa0002790	Msa1366180	0.920099	1.964198e-87	-8.615850e-47
Msa0003780	Msa1366180	0.856766	2.577120e-62	-8.615850e-47
Msa0019390	Msa1366180	0.814822	1.266687e-51	-8.615850e-47
Msa0022970	Msa1366180	0.873863	1.057348e-67	-8.615850e-47
Msa0027260	Msa1366180	0.803794	2.940506e-49	-8.615850e-47
Msa0040690	Msa1366180	0.824039	1.001770e-53	-8.615850e-47
Msa0042280	Msa1366180	0.825822	3.800803e-54	-8.615850e-47
Msa0043660	Msa1366180	0.834459	2.960626e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1366180	MtrunA17_Chr1g0187471	82.707	133	1	1	19	129	1	133	1.32e-70	207
Msa1366180	MtrunA17_Chr4g0067861	78.947	133	6	1	19	129	1	133	3.98e-69	204

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1366180	AT2G20450.1	69.173	133	19	1	19	129	1	133	4.72e-57	174
Msa1366180	AT4G27090.1	70.000	130	17	1	19	126	1	130	7.65e-57	173

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Find 63 sgRNAs with CRISPR-Local

Find 338 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAATCAATTTCCTTCCCC+AGG	0.448020	tig0018446:-42945	None:intergenic
AACCCACTCTCTCTGCCTTG+AGG	0.593852	tig0018446:-48023	None:intergenic
AAGTGGGAGAAGAGCTCCTG+GGG	0.619297	tig0018446:+42929	Msa1366180:CDS
AATCTGTTAGAAGTTTCAAA+TGG	0.493350	tig0018446:+47887	Msa1366180:three_prime_UTR
AATGTCCCTTGTGGACATTC+TGG	0.368012	tig0018446:+48172	Msa1366180:three_prime_UTR
AATTCTACCTGCAGCTTCCA+TGG	0.474519	tig0018446:-42783	None:intergenic
ACAACGAGCTTGCCATAATC+TGG	0.305463	tig0018446:-42522	None:intergenic
ACAAGTGGGAGAAGAGCTCC+TGG	0.539704	tig0018446:+42927	Msa1366180:CDS
ACACTAGCTTATGCATATCA+TGG	0.544925	tig0018446:-48213	None:intergenic
ACCCACTCTCTCTGCCTTGA+GGG	0.478423	tig0018446:-48022	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGATGAAAATGGAAAAAGAT+TGG	-	tig0018446:42595-42614	None:intergenic	30.0%
GGAAATTGATTGTTAAGAAG+AGG	+	tig0018446:42954-42973	Msa1366180:intron	30.0%
AATTGATTGTTAAGAAGAGG+AGG	+	tig0018446:42957-42976	Msa1366180:intron	30.0%
ATTGATTGTTAAGAAGAGGA+GGG	+	tig0018446:42958-42977	Msa1366180:intron	30.0%
TGATAGGTTCAAGATTATGT+TGG	+	tig0018446:42997-43016	Msa1366180:intron	30.0%
AAAGTTGTATCTTCATAAGC+TGG	+	tig0018446:43378-43397	Msa1366180:intron	30.0%
TAATATTCATGAGCTTGTCA+AGG	-	tig0018446:43418-43437	None:intergenic	30.0%
CATAATTTCAATTTGTGCAG+AGG	+	tig0018446:43698-43717	Msa1366180:intron	30.0%
TCCTTCTATTTAGTACAACT+TGG	+	tig0018446:43813-43832	Msa1366180:three_prime_UTR	30.0%
TCCAAGTTGTACTAAATAGA+AGG	-	tig0018446:43817-43836	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0018446	gene	42332	48283	42332	ID=Msa1366180;Name=Msa1366180
tig0018446	mRNA	42332	48283	42332	ID=Msa1366180-mRNA-1;Parent=Msa1366180;Name=Msa1366180-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0\|0.8\|0.83\|1\|0.6\|0.5\|6\|683\|129
tig0018446	exon	42332	42388	42332	ID=Msa1366180-mRNA-1:exon:14981;Parent=Msa1366180-mRNA-1
tig0018446	exon	42471	42572	42471	ID=Msa1366180-mRNA-1:exon:14982;Parent=Msa1366180-mRNA-1
tig0018446	exon	42668	42797	42668	ID=Msa1366180-mRNA-1:exon:14983;Parent=Msa1366180-mRNA-1
tig0018446	exon	42918	42964	42918	ID=Msa1366180-mRNA-1:exon:14984;Parent=Msa1366180-mRNA-1
tig0018446	exon	43718	43901	43718	ID=Msa1366180-mRNA-1:exon:14985;Parent=Msa1366180-mRNA-1
tig0018446	exon	47731	48283	47731	ID=Msa1366180-mRNA-1:exon:14986;Parent=Msa1366180-mRNA-1
tig0018446	CDS	42332	42388	42332	ID=Msa1366180-mRNA-1:cds;Parent=Msa1366180-mRNA-1
tig0018446	CDS	42471	42572	42471	ID=Msa1366180-mRNA-1:cds;Parent=Msa1366180-mRNA-1
tig0018446	CDS	42668	42797	42668	ID=Msa1366180-mRNA-1:cds;Parent=Msa1366180-mRNA-1
tig0018446	CDS	42918	42964	42918	ID=Msa1366180-mRNA-1:cds;Parent=Msa1366180-mRNA-1
tig0018446	CDS	43718	43771	43718	ID=Msa1366180-mRNA-1:cds;Parent=Msa1366180-mRNA-1
tig0018446	three_prime_UTR	43772	43901	43772	ID=Msa1366180-mRNA-1:three_prime_utr;Parent=Msa1366180-mRNA-1
tig0018446	three_prime_UTR	47731	48283	47731	ID=Msa1366180-mRNA-1:three_prime_utr;Parent=Msa1366180-mRNA-1

Gene Sequence

>Msa1366180

TTGACAACACTCTCTAACCTTTGTTTCAGCTGCGAGTGCCTCAGAAAATCGAAAATGCCGTTCAAGAGGTTTGTTGAGATCGGAAGAGTTGCACTTGTCAACTATGGCCCAGATTATGGCAAGCTCGTTGTTATCGTTGATGTTATCGACCAAACTAGGGCTCTTGTTGATGCACCTGACATGGAGAGAGCTCCAATCAATTTCAAGAGGCTTTCTCTAACTGATATCAAGATTGATATCAAGAGAGTTCCTAAGAAGAAGGATCTCGTCAAAGCCATGGAAGCTGCAGATGTGAAGAACAAGTGGGAGAAGAGCTCCTGGGGAAGGAAATTGATTAGGGCTGGTGTTGTTAGGCAAGAACTTGCTAAGCTGAGGAAGACCGCTGCTTAG

Protein sequence

>Msa1366180

LTTLSNLCFSCECLRKSKMPFKRFVEIGRVALVNYGPDYGKLVVIVDVIDQTRALVDAPDMERAPINFKRLSLTDIKIDIKRVPKKKDLVKAMEAADVKNKWEKSSWGRKLIRAGVVRQELAKLRKTAA*