AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0289580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0289580 MtrunA17_Chr1g0204941 97.701 261 6 0 1 261 1 261 0.0 530
Msa0289580 MtrunA17_Chr3g0081171 95.402 261 12 0 1 261 1 261 2.86e-180 495
Msa0289580 MtrunA17_Chr5g0394611 94.636 261 14 0 1 261 1 261 7.67e-179 492
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0289580 AT3G04840.1 85.115 262 38 1 1 261 1 262 1.75e-163 453
Msa0289580 AT4G34670.1 85.496 262 37 1 1 261 1 262 4.54e-163 452

Find 89 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCAAACTTGGGAGCTTTA+AGG 0.168578 2_3:-35811572 None:intergenic
AATATCATACCAATCCTTCT+TGG 0.295389 2_3:-35809580 None:intergenic
ATTTGGTCCTTGTAGGTTCA+TGG 0.297913 2_3:+35812194 Msa0289580:intron
CATATTAGTTTGTTCAAATT+CGG 0.307811 2_3:+35812604 Msa0289580:three_prime_UTR
GAAGGATTGGTATGATATTA+AGG 0.312711 2_3:+35809584 Msa0289580:CDS
GTTTCTCACCCCAAGTCTTT+TGG 0.335249 2_3:+35812506 Msa0289580:three_prime_UTR
CTGACTAGATTGTGCATAAC+AGG 0.339955 2_3:-35811156 None:intergenic
AAAGCTCCCAAGTTTGATCT+TGG 0.357514 2_3:+35811576 Msa0289580:CDS
TAAGAACAAGCGGATCTCTA+AGG 0.365175 2_3:+35809427 Msa0289580:CDS
GTTTGATCTTGGAAAATTGA+TGG 0.369245 2_3:+35811587 Msa0289580:CDS
GAAATTGTTGGAGCTTGATT+TGG 0.369823 2_3:+35812287 Msa0289580:exon
AAATTCATTCCCGAGATGAT+TGG 0.381702 2_3:+35811480 Msa0289580:CDS
GGGACGAAGACCATGCATTC+AGG 0.393353 2_3:+35810832 Msa0289580:CDS
ATCCTGTGATTTGAAGGAAT+TGG 0.402781 2_3:+35811452 Msa0289580:CDS
GACCCTCGTGTCTCGTACTC+AGG 0.406163 2_3:+35809641 Msa0289580:CDS
TACCAATCCTTCTTGGCAAA+TGG 0.412105 2_3:-35809573 None:intergenic
TAGAGTGTTTGAGGTTTCAT+TGG 0.413434 2_3:+35810797 Msa0289580:CDS
GTTTCATTGGCTGATCTTCA+AGG 0.434675 2_3:+35810810 Msa0289580:CDS
TGCTGATCCATTTGCCAAGA+AGG 0.436339 2_3:+35809566 Msa0289580:CDS
AATTCATTCCCGAGATGATT+GGG 0.437177 2_3:+35811481 Msa0289580:CDS
AGCATCATCCTGTGATTTGA+AGG 0.439297 2_3:+35811446 Msa0289580:CDS
TACCAAGAGGAGAGCTAACC+AGG 0.440122 2_3:+35811124 Msa0289580:CDS
TCCGTCACCATTTCATCAGC+AGG 0.444686 2_3:-35812254 None:intergenic
ACTCAAGCATAGAGTGTTTG+AGG 0.454600 2_3:+35810788 Msa0289580:CDS
ACCATGCATTCAGGAAGATT+AGG 0.462005 2_3:+35810841 Msa0289580:CDS
ATCCATTTGCCAAGAAGGAT+TGG 0.465718 2_3:+35809571 Msa0289580:CDS
ATCTCCTTCCCAATCATCTC+GGG 0.483111 2_3:-35811489 None:intergenic
GAGGAACCTACTGAAATTGT+TGG 0.484047 2_3:+35812275 Msa0289580:CDS
TGTTCAGATCCGTAGGAAGA+TGG 0.490433 2_3:+35811404 Msa0289580:intron
CACCTGGTTAGCTCTCCTCT+TGG 0.502596 2_3:-35811126 None:intergenic
AACTGACAAACTGAGGTCAT+TGG 0.506332 2_3:+35811016 Msa0289580:CDS
TGAGGTCATTGGTGCGTAAG+TGG 0.507827 2_3:+35811027 Msa0289580:CDS
CGGATCTCTAAGGGGAAGAA+AGG 0.516719 2_3:+35809437 Msa0289580:CDS
AAGAACAAGCGGATCTCTAA+GGG 0.521243 2_3:+35809428 Msa0289580:CDS
CTTGTTCTTACCAACGGCCA+TGG 0.523346 2_3:-35809414 None:intergenic
ACCTAATCTTCCTGAATGCA+TGG 0.523822 2_3:-35810842 None:intergenic
TTTCATTGGCTGATCTTCAA+GGG 0.523908 2_3:+35810811 Msa0289580:CDS
GGACGCAAAACCAAAAGACT+TGG 0.524592 2_3:-35812516 None:intergenic
TCATCTCGGGAATGAATTTG+CGG 0.528925 2_3:-35811476 None:intergenic
GGTATCATAAAACCCTAAAA+CGG 0.529634 2_3:+35809342 None:intergenic
AGAGAGGCCTGCTGATGAAA+TGG 0.532099 2_3:+35812247 Msa0289580:CDS
TCTTGCCGACATTCTTCACC+TGG 0.534041 2_3:-35809620 None:intergenic
AATCTCCTTCCCAATCATCT+CGG 0.535678 2_3:-35811490 None:intergenic
TTGAGAGCTGAAGATGTTCA+AGG 0.537527 2_3:+35810864 Msa0289580:CDS
GACGCAAAACCAAAAGACTT+GGG 0.538880 2_3:-35812515 None:intergenic
CGGATGAACACATTCTGCAA+GGG 0.539130 2_3:-35811537 None:intergenic
TCAAATCACAGGATGATGCT+TGG 0.544201 2_3:-35811443 None:intergenic
CATAACAGGTCCTCTTCACC+TGG 0.545447 2_3:-35811142 None:intergenic
GGAGAGCTAACCAGGTGAAG+AGG 0.557404 2_3:+35811132 Msa0289580:CDS
GAATGACAGATTGCTTCAGA+TGG 0.560187 2_3:+35810765 Msa0289580:intron
CTCTGAGGATGTTGGCACAA+AGG 0.562498 2_3:+35812223 Msa0289580:CDS
CTTTATTTGTTCAGATCCGT+AGG 0.563835 2_3:+35811397 Msa0289580:intron
GTTTCACTGTTTGCAGAGTG+CGG 0.564928 2_3:-35809392 None:intergenic
GATCCGCTTGTTCTTACCAA+CGG 0.569816 2_3:-35809420 None:intergenic
GACCAATTCCTTCAAATCAC+AGG 0.574407 2_3:-35811454 None:intergenic
TCGGATGAACACATTCTGCA+AGG 0.575354 2_3:-35811538 None:intergenic
ACAATCTAGTCAGATTAGAC+AGG 0.580594 2_3:+35811166 Msa0289580:CDS
CAAGCTCCAACAATTTCAGT+AGG 0.582102 2_3:-35812281 None:intergenic
GGAGATTACTCTGAGGATGT+TGG 0.587473 2_3:+35812215 Msa0289580:CDS
TTCTTCACCTGGAAAACTGA+AGG 0.588083 2_3:-35809609 None:intergenic
TGATCTCAACCATCTTCCTA+CGG 0.590794 2_3:-35811413 None:intergenic
TTCATTGGCTGATCTTCAAG+GGG 0.595752 2_3:+35810812 Msa0289580:CDS
CAGTAGTCTTGACATCCACA+TGG 0.596992 2_3:-35811067 None:intergenic
AACAGTGAAACCATGGCCGT+TGG 0.599680 2_3:+35809404 Msa0289580:exon
CATTCCCGAGATGATTGGGA+AGG 0.605231 2_3:+35811485 Msa0289580:CDS
TGATCTTGGAAAATTGATGG+AGG 0.612140 2_3:+35811590 Msa0289580:CDS
TGAGAGCTGAAGATGTTCAA+GGG 0.612312 2_3:+35810865 Msa0289580:CDS
ACCCTCGTGTCTCGTACTCA+GGG 0.615233 2_3:+35809642 Msa0289580:CDS
CTCTGCAAACAGTGAAACCA+TGG 0.618251 2_3:+35809397 Msa0289580:exon
ATCTCTAAGGGGAAGAAAGG+TGG 0.621403 2_3:+35809440 Msa0289580:CDS
AACTCTTGTTGAAGCCCATG+TGG 0.622205 2_3:+35811052 Msa0289580:CDS
GTCTCGTACTCAGGGTACCA+AGG 0.623684 2_3:+35809650 Msa0289580:CDS
TGGCCGTTGGTAAGAACAAG+CGG 0.624911 2_3:+35809417 Msa0289580:CDS
CAGAGTTCTCACAGCAACAA+TGG 0.627817 2_3:-35809367 None:intergenic
GCCTGCTGATGAAATGGTGA+CGG 0.629382 2_3:+35812253 Msa0289580:CDS
GGATGAACACATTCTGCAAG+GGG 0.631103 2_3:-35811536 None:intergenic
CAAGGGGTAAATACTAGACG+TGG 0.633754 2_3:-35811520 None:intergenic
CTACTGATAATTACACATTG+AGG 0.636083 2_3:+35811084 Msa0289580:CDS
TTTGCATTGGCTTTACCAAG+AGG 0.642280 2_3:+35811111 Msa0289580:CDS
TACCCTGAGTACGAGACACG+AGG 0.648373 2_3:-35809644 None:intergenic
ATGTTGGCACAAAGGTAGAG+AGG 0.654238 2_3:+35812231 Msa0289580:CDS
ATTTCACAACTGACAAACTG+AGG 0.681977 2_3:+35811009 Msa0289580:CDS
TGCTGATGAAATGGTGACGG+AGG 0.686062 2_3:+35812256 Msa0289580:CDS
ACGCAAAACCAAAAGACTTG+GGG 0.688719 2_3:-35812514 None:intergenic
ACCCTGAGTACGAGACACGA+GGG 0.700568 2_3:-35809643 None:intergenic
AGTAGTCTTGACATCCACAT+GGG 0.706350 2_3:-35811066 None:intergenic
AGAACAAGCGGATCTCTAAG+GGG 0.721950 2_3:+35809429 Msa0289580:CDS
GCAAAGAACAAATATGCACG+AGG 0.724902 2_3:-35812566 None:intergenic
GGTTCATGGAGATTACTCTG+AGG 0.741731 2_3:+35812208 Msa0289580:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGATTTTTTTTTTATTTAC+AGG + chr2_3:35810980-35810999 Msa0289580:intron 10.0%
!!! TGATTTTTTTTTTATTTACA+GGG + chr2_3:35810981-35811000 Msa0289580:intron 10.0%
!! GATATTATGAAAATAAATAT+TGG - chr2_3:35811659-35811678 None:intergenic 10.0%
!! GTAAAAAATGAAAATTTGAA+TGG - chr2_3:35809503-35809522 None:intergenic 15.0%
!!! GTTTTTTGTTTTTTGTAATT+TGG + chr2_3:35809692-35809711 Msa0289580:intron 15.0%
!!! TTGGTATAAAAATTGTTTTA+TGG - chr2_3:35810231-35810250 None:intergenic 15.0%
!!! GATTTTTTTTTTATTTACAG+GGG + chr2_3:35810982-35811001 Msa0289580:intron 15.0%
!!! TAAGAGAATATTTCTTTTTT+TGG - chr2_3:35811942-35811961 None:intergenic 15.0%
!!! ATATATATCTGAATTTTGTT+TGG + chr2_3:35812381-35812400 Msa0289580:three_prime_UTR 15.0%
!!! TTTGAATGGATTTTGAAAAA+GGG - chr2_3:35809489-35809508 None:intergenic 20.0%
!!! ATTTGAATGGATTTTGAAAA+AGG - chr2_3:35809490-35809509 None:intergenic 20.0%
!! ATATTCAATGAAAGTAAGAT+AGG - chr2_3:35809761-35809780 None:intergenic 20.0%
!!! TCTTGTCTTTTAAATAATGT+TGG - chr2_3:35810433-35810452 None:intergenic 20.0%
!! CTTAATGCTTATTTAGAAAA+TGG + chr2_3:35810735-35810754 Msa0289580:intron 20.0%
!!! AAAATCTTTTGACAAATTTC+TGG + chr2_3:35810889-35810908 Msa0289580:CDS 20.0%
!!! AAATCTTTTGACAAATTTCT+GGG + chr2_3:35810890-35810909 Msa0289580:CDS 20.0%
!! ATATATAAAGAAGAAATCAC+TGG + chr2_3:35811309-35811328 Msa0289580:intron 20.0%
!!! CAATACATTATTTCTAGTTT+TGG + chr2_3:35812018-35812037 Msa0289580:intron 20.0%
!!! CATATTAGTTTGTTCAAATT+CGG + chr2_3:35812604-35812623 Msa0289580:three_prime_UTR 20.0%
!! TTTCCTTGCATTTTCTATAA+TGG + chr2_3:35809526-35809545 Msa0289580:intron 25.0%
! AAACCATTATAGAAAATGCA+AGG - chr2_3:35809532-35809551 None:intergenic 25.0%
! AAAAACAAAAAACATGACAG+AGG - chr2_3:35809685-35809704 None:intergenic 25.0%
! TCTTACTTTCATTGAATATC+TGG + chr2_3:35809762-35809781 Msa0289580:intron 25.0%
! TTAAGCTATCTAAACAATCA+GGG - chr2_3:35809793-35809812 None:intergenic 25.0%
! ATTAAGCTATCTAAACAATC+AGG - chr2_3:35809794-35809813 None:intergenic 25.0%
!! AAGCTAAAAGTTTTTCCTAT+AGG + chr2_3:35809908-35809927 Msa0289580:intron 25.0%
! TTATTTCCATAATAGCCTAT+AGG - chr2_3:35809926-35809945 None:intergenic 25.0%
! AAGAAAATGTTGTCAAATAG+CGG - chr2_3:35810193-35810212 None:intergenic 25.0%
!!! TGATTGTTGTTTTATAAGTG+TGG - chr2_3:35810361-35810380 None:intergenic 25.0%
! GAGAATAAAAATGAAGACAT+GGG - chr2_3:35810536-35810555 None:intergenic 25.0%
!! AAATATGTCTTAGTCTTTCA+TGG + chr2_3:35810677-35810696 Msa0289580:intron 25.0%
!! AATATGTCTTAGTCTTTCAT+GGG + chr2_3:35810678-35810697 Msa0289580:intron 25.0%
! ATTATGACAAATAGATGGTT+CGG - chr2_3:35810928-35810947 None:intergenic 25.0%
! ACAACATTATGACAAATAGA+TGG - chr2_3:35810933-35810952 None:intergenic 25.0%
!! TTTGTCATAATGTTGTTTGT+TGG + chr2_3:35810937-35810956 Msa0289580:intron 25.0%
! ATATATTAGTGTATCCAACA+CGG + chr2_3:35811238-35811257 Msa0289580:intron 25.0%
! AACAGCATTTCATAAAAGAA+AGG - chr2_3:35811289-35811308 None:intergenic 25.0%
!! AATTTTCCAAGATCAAACTT+GGG - chr2_3:35811585-35811604 None:intergenic 25.0%
! TATCACCTGAATAAAAACTT+TGG + chr2_3:35811675-35811694 Msa0289580:intron 25.0%
!! AACAACCAAAGTTTTTATTC+AGG - chr2_3:35811683-35811702 None:intergenic 25.0%
!! AAAAACTTTGGTTGTTACTT+TGG + chr2_3:35811687-35811706 Msa0289580:intron 25.0%
!! TTTGGAAAGTTTGAAGTAAT+TGG - chr2_3:35811756-35811775 None:intergenic 25.0%
! AATAATCTGAAGGTTGTTTA+TGG - chr2_3:35811798-35811817 None:intergenic 25.0%
! TTGAACTTGTAATAATCTGA+AGG - chr2_3:35811808-35811827 None:intergenic 25.0%
!!! ATCATGTTGCCTTTTAAAAT+TGG + chr2_3:35811876-35811895 Msa0289580:intron 25.0%
!!! TCATGTTGCCTTTTAAAATT+GGG + chr2_3:35811877-35811896 Msa0289580:intron 25.0%
!! TAACACTACCCAATTTTAAA+AGG - chr2_3:35811888-35811907 None:intergenic 25.0%
! ACTTATAACCATCTAAAAAG+TGG + chr2_3:35812150-35812169 Msa0289580:intron 25.0%
!!! GGTTTGATTTTGTTTCTATT+TGG + chr2_3:35812177-35812196 Msa0289580:intron 25.0%
!!! GTATATTTTTCAGCAATGAA+TGG - chr2_3:35812540-35812559 None:intergenic 25.0%
!! AATGGATTTTGAAAAAGGGT+TGG - chr2_3:35809485-35809504 None:intergenic 30.0%
AATATCATACCAATCCTTCT+TGG - chr2_3:35809583-35809602 None:intergenic 30.0%
! GAAGGATTGGTATGATATTA+AGG + chr2_3:35809584-35809603 Msa0289580:CDS 30.0%
!! GGTTTGATTTGTACATTGTT+AGG + chr2_3:35809713-35809732 Msa0289580:intron 30.0%
! GTTTTTCCTATAGGCTATTA+TGG + chr2_3:35809917-35809936 Msa0289580:intron 30.0%
TAAGCTGAAAAAACATCTCA+TGG + chr2_3:35809943-35809962 Msa0289580:intron 30.0%
GAACATAAGTAACTAAGTGA+CGG - chr2_3:35810004-35810023 None:intergenic 30.0%
GTTACTTATGTTCGTAGATA+CGG + chr2_3:35810011-35810030 Msa0289580:intron 30.0%
AGAAAATGTTGTCAAATAGC+GGG - chr2_3:35810192-35810211 None:intergenic 30.0%
! TTATACCAAAAAGCATATCG+TGG + chr2_3:35810242-35810261 Msa0289580:intron 30.0%
CGAGAATAAAAATGAAGACA+TGG - chr2_3:35810537-35810556 None:intergenic 30.0%
! ATATGTCTTAGTCTTTCATG+GGG + chr2_3:35810679-35810698 Msa0289580:intron 30.0%
GTTGCTGAAATTTGATCAAT+TGG + chr2_3:35810701-35810720 Msa0289580:intron 30.0%
CTACTGATAATTACACATTG+AGG + chr2_3:35811084-35811103 Msa0289580:CDS 30.0%
!! CTTTAAGGATCTTCACTTTT+CGG - chr2_3:35811560-35811579 None:intergenic 30.0%
! CAATTTTCCAAGATCAAACT+TGG - chr2_3:35811586-35811605 None:intergenic 30.0%
GTTTGATCTTGGAAAATTGA+TGG + chr2_3:35811587-35811606 Msa0289580:CDS 30.0%
! GTTTTCACACAAGCATTTAT+TGG - chr2_3:35811849-35811868 None:intergenic 30.0%
AAATCAGATATGCATGCTAT+TGG + chr2_3:35812412-35812431 Msa0289580:intron 30.0%
AATCAGATATGCATGCTATT+GGG + chr2_3:35812413-35812432 Msa0289580:intron 30.0%
! TTGTTCCACGATATGCTTTT+TGG - chr2_3:35810250-35810269 None:intergenic 35.0%
GTAGATCACATATCGCTATA+GGG - chr2_3:35810297-35810316 None:intergenic 35.0%
AGATAGATATTTCGAGCAGA+GGG - chr2_3:35810319-35810338 None:intergenic 35.0%
TAGATAGATATTTCGAGCAG+AGG - chr2_3:35810320-35810339 None:intergenic 35.0%
TCGAAATATCTATCTAGCAC+TGG + chr2_3:35810324-35810343 Msa0289580:intron 35.0%
CGAAATATCTATCTAGCACT+GGG + chr2_3:35810325-35810344 Msa0289580:intron 35.0%
!! AATAATGTTGGTCTTGCTTG+TGG - chr2_3:35810421-35810440 None:intergenic 35.0%
GACAAGAAAAAAGACTGAAC+TGG + chr2_3:35810446-35810465 Msa0289580:intron 35.0%
TGAACTGGCATTATCATGAT+GGG + chr2_3:35810461-35810480 Msa0289580:intron 35.0%
!!! TTTTCTAAAGTATCGAGTCC+AGG + chr2_3:35810498-35810517 Msa0289580:intron 35.0%
!! TTTCTAAAGTATCGAGTCCA+GGG + chr2_3:35810499-35810518 Msa0289580:intron 35.0%
ATTCTCATGTAAGTGGAAAG+AGG - chr2_3:35810576-35810595 None:intergenic 35.0%
TCTTTCCACTTACATGAGAA+TGG + chr2_3:35810575-35810594 Msa0289580:intron 35.0%
AACTTCCATTCTCATGTAAG+TGG - chr2_3:35810583-35810602 None:intergenic 35.0%
!!! GCTATTTAACCCATTGGTTT+TGG + chr2_3:35810640-35810659 Msa0289580:intron 35.0%
TCCTTGTAACCAAAACCAAT+GGG - chr2_3:35810652-35810671 None:intergenic 35.0%
TTCCTTGTAACCAAAACCAA+TGG - chr2_3:35810653-35810672 None:intergenic 35.0%
! TAGAGTGTTTGAGGTTTCAT+TGG + chr2_3:35810797-35810816 Msa0289580:CDS 35.0%
! TTTCATTGGCTGATCTTCAA+GGG + chr2_3:35810811-35810830 Msa0289580:CDS 35.0%
ATTTCACAACTGACAAACTG+AGG + chr2_3:35811009-35811028 Msa0289580:CDS 35.0%
! ACATTGAGGATGTTTTGCAT+TGG + chr2_3:35811098-35811117 Msa0289580:CDS 35.0%
ACAATCTAGTCAGATTAGAC+AGG + chr2_3:35811166-35811185 Msa0289580:CDS 35.0%
!! ATCCAACACATGTTTTAGGT+AGG + chr2_3:35811262-35811281 Msa0289580:intron 35.0%
!!! AAATCACTGGTTTTGAACCT+AGG + chr2_3:35811322-35811341 Msa0289580:intron 35.0%
CTACGGATCTGAACAAATAA+AGG - chr2_3:35811399-35811418 None:intergenic 35.0%
! CTTTATTTGTTCAGATCCGT+AGG + chr2_3:35811397-35811416 Msa0289580:intron 35.0%
ATCCTGTGATTTGAAGGAAT+TGG + chr2_3:35811452-35811471 Msa0289580:CDS 35.0%
AAATTCATTCCCGAGATGAT+TGG + chr2_3:35811480-35811499 Msa0289580:CDS 35.0%
AATTCATTCCCGAGATGATT+GGG + chr2_3:35811481-35811500 Msa0289580:CDS 35.0%
TGATCTTGGAAAATTGATGG+AGG + chr2_3:35811590-35811609 Msa0289580:CDS 35.0%
CTTTCCAAAAGCTCTCTATT+CGG + chr2_3:35811767-35811786 Msa0289580:intron 35.0%
!! TAGTGTTAACTTGTGCCTTT+AGG + chr2_3:35811900-35811919 Msa0289580:intron 35.0%
!! AGTGTTAACTTGTGCCTTTA+GGG + chr2_3:35811901-35811920 Msa0289580:intron 35.0%
TTTCTTAACATGTGCCCTAA+AGG - chr2_3:35811918-35811937 None:intergenic 35.0%
CTTCTAAACTTGTGCCTTAA+GGG + chr2_3:35812041-35812060 Msa0289580:intron 35.0%
!! AATGTTAACTTGTGCCCTTA+AGG - chr2_3:35812058-35812077 None:intergenic 35.0%
TCATGCTAAAAGAGAACAGA+AGG - chr2_3:35812107-35812126 None:intergenic 35.0%
AACCATCTAAAAAGTGGCTT+TGG + chr2_3:35812156-35812175 Msa0289580:intron 35.0%
!!! AACCAAAGCCACTTTTTAGA+TGG - chr2_3:35812161-35812180 None:intergenic 35.0%
! TGTTTCTATTTGGTCCTTGT+AGG + chr2_3:35812187-35812206 Msa0289580:intron 35.0%
GAAATTGTTGGAGCTTGATT+TGG + chr2_3:35812287-35812306 Msa0289580:exon 35.0%
ATCAGATATGCATGCTATTG+GGG + chr2_3:35812414-35812433 Msa0289580:intron 35.0%
TAAGAACAAGCGGATCTCTA+AGG + chr2_3:35809427-35809446 Msa0289580:CDS 40.0%
AAGAACAAGCGGATCTCTAA+GGG + chr2_3:35809428-35809447 Msa0289580:CDS 40.0%
ATCCATTTGCCAAGAAGGAT+TGG + chr2_3:35809571-35809590 Msa0289580:CDS 40.0%
TACCAATCCTTCTTGGCAAA+TGG - chr2_3:35809576-35809595 None:intergenic 40.0%
TTCTTCACCTGGAAAACTGA+AGG - chr2_3:35809612-35809631 None:intergenic 40.0%
! GTTTTCCAGGTGAAGAATGT+CGG + chr2_3:35809615-35809634 Msa0289580:CDS 40.0%
GACAGAGGAAAACAATACCT+TGG - chr2_3:35809670-35809689 None:intergenic 40.0%
GCTATCTAAACAATCAGGGA+GGG - chr2_3:35809789-35809808 None:intergenic 40.0%
AGCTATCTAAACAATCAGGG+AGG - chr2_3:35809790-35809809 None:intergenic 40.0%
CACTAAGTATACTCAGTCCA+AGG - chr2_3:35810061-35810080 None:intergenic 40.0%
TCTTGTAGTGCAGAAAACAG+TGG + chr2_3:35810122-35810141 Msa0289580:intron 40.0%
CTTGTAGTGCAGAAAACAGT+GGG + chr2_3:35810123-35810142 Msa0289580:intron 40.0%
!! TTGTCAAATAGCGGGTAAAG+TGG - chr2_3:35810184-35810203 None:intergenic 40.0%
GGTAGATCACATATCGCTAT+AGG - chr2_3:35810298-35810317 None:intergenic 40.0%
CTGAACTGGCATTATCATGA+TGG + chr2_3:35810460-35810479 Msa0289580:intron 40.0%
!! TTCTAAAGTATCGAGTCCAG+GGG + chr2_3:35810500-35810519 Msa0289580:intron 40.0%
!! CAATGGGTTAAATAGCAGCT+AGG - chr2_3:35810636-35810655 None:intergenic 40.0%
! CTAGCTGCTATTTAACCCAT+TGG + chr2_3:35810634-35810653 Msa0289580:intron 40.0%
!!! ACCCATTGGTTTTGGTTACA+AGG + chr2_3:35810648-35810667 Msa0289580:intron 40.0%
GAATGACAGATTGCTTCAGA+TGG + chr2_3:35810765-35810784 Msa0289580:intron 40.0%
! ACTCAAGCATAGAGTGTTTG+AGG + chr2_3:35810788-35810807 Msa0289580:CDS 40.0%
! GTTTCATTGGCTGATCTTCA+AGG + chr2_3:35810810-35810829 Msa0289580:CDS 40.0%
! TTCATTGGCTGATCTTCAAG+GGG + chr2_3:35810812-35810831 Msa0289580:CDS 40.0%
ACCATGCATTCAGGAAGATT+AGG + chr2_3:35810841-35810860 Msa0289580:CDS 40.0%
ACCTAATCTTCCTGAATGCA+TGG - chr2_3:35810845-35810864 None:intergenic 40.0%
TTGAGAGCTGAAGATGTTCA+AGG + chr2_3:35810864-35810883 Msa0289580:CDS 40.0%
TGAGAGCTGAAGATGTTCAA+GGG + chr2_3:35810865-35810884 Msa0289580:CDS 40.0%
AACTGACAAACTGAGGTCAT+TGG + chr2_3:35811016-35811035 Msa0289580:CDS 40.0%
! AGTAGTCTTGACATCCACAT+GGG - chr2_3:35811069-35811088 None:intergenic 40.0%
!! TTTGCATTGGCTTTACCAAG+AGG + chr2_3:35811111-35811130 Msa0289580:CDS 40.0%
CTGACTAGATTGTGCATAAC+AGG - chr2_3:35811159-35811178 None:intergenic 40.0%
! CGGTATCCAACACATGTTTT+AGG + chr2_3:35811258-35811277 Msa0289580:intron 40.0%
GTCCTACCTAAAACATGTGT+TGG - chr2_3:35811267-35811286 None:intergenic 40.0%
AGAAGACAAAGCATGATCCT+AGG - chr2_3:35811342-35811361 None:intergenic 40.0%
TGATCTCAACCATCTTCCTA+CGG - chr2_3:35811416-35811435 None:intergenic 40.0%
TCAAATCACAGGATGATGCT+TGG - chr2_3:35811446-35811465 None:intergenic 40.0%
AGCATCATCCTGTGATTTGA+AGG + chr2_3:35811446-35811465 Msa0289580:CDS 40.0%
GACCAATTCCTTCAAATCAC+AGG - chr2_3:35811457-35811476 None:intergenic 40.0%
TCATCTCGGGAATGAATTTG+CGG - chr2_3:35811479-35811498 None:intergenic 40.0%
AATCTCCTTCCCAATCATCT+CGG - chr2_3:35811493-35811512 None:intergenic 40.0%
GATCAAACTTGGGAGCTTTA+AGG - chr2_3:35811575-35811594 None:intergenic 40.0%
AAAGCTCCCAAGTTTGATCT+TGG + chr2_3:35811576-35811595 Msa0289580:CDS 40.0%
!! TTGGTTGTTACTTTGGTCAC+TGG + chr2_3:35811694-35811713 Msa0289580:intron 40.0%
! GAAACCGAATAGAGAGCTTT+TGG - chr2_3:35811774-35811793 None:intergenic 40.0%
GCTTCTAAACTTGTGCCTTA+AGG + chr2_3:35812040-35812059 Msa0289580:intron 40.0%
ATTTGGTCCTTGTAGGTTCA+TGG + chr2_3:35812194-35812213 Msa0289580:intron 40.0%
GTAATCTCCATGAACCTACA+AGG - chr2_3:35812204-35812223 None:intergenic 40.0%
GAGGAACCTACTGAAATTGT+TGG + chr2_3:35812275-35812294 Msa0289580:CDS 40.0%
CAAGCTCCAACAATTTCAGT+AGG - chr2_3:35812284-35812303 None:intergenic 40.0%
GAGCTGGGTGATTAAACATT+TGG + chr2_3:35812436-35812455 Msa0289580:intron 40.0%
! GGGTGATTAAACATTTGGTG+TGG + chr2_3:35812441-35812460 Msa0289580:intron 40.0%
ACGCAAAACCAAAAGACTTG+GGG - chr2_3:35812517-35812536 None:intergenic 40.0%
GACGCAAAACCAAAAGACTT+GGG - chr2_3:35812518-35812537 None:intergenic 40.0%
GCAAAGAACAAATATGCACG+AGG - chr2_3:35812569-35812588 None:intergenic 40.0%
! GCAACAATGGCACCGTTTTA+GGG - chr2_3:35809357-35809376 None:intergenic 45.0%
! AGCAACAATGGCACCGTTTT+AGG - chr2_3:35809358-35809377 None:intergenic 45.0%
CAGAGTTCTCACAGCAACAA+TGG - chr2_3:35809370-35809389 None:intergenic 45.0%
GTTTCACTGTTTGCAGAGTG+CGG - chr2_3:35809395-35809414 None:intergenic 45.0%
CTCTGCAAACAGTGAAACCA+TGG + chr2_3:35809397-35809416 Msa0289580:exon 45.0%
GATCCGCTTGTTCTTACCAA+CGG - chr2_3:35809423-35809442 None:intergenic 45.0%
AGAACAAGCGGATCTCTAAG+GGG + chr2_3:35809429-35809448 Msa0289580:CDS 45.0%
! ATCTCTAAGGGGAAGAAAGG+TGG + chr2_3:35809440-35809459 Msa0289580:CDS 45.0%
TGCTGATCCATTTGCCAAGA+AGG + chr2_3:35809566-35809585 Msa0289580:CDS 45.0%
! TAAGGCTCCTTCAGTTTTCC+AGG + chr2_3:35809602-35809621 Msa0289580:CDS 45.0%
TGCCAATCCAAACATGTCCT+TGG + chr2_3:35810041-35810060 Msa0289580:intron 45.0%
GTCCAAGGACATGTTTGGAT+TGG - chr2_3:35810046-35810065 None:intergenic 45.0%
ACTCAGTCCAAGGACATGTT+TGG - chr2_3:35810051-35810070 None:intergenic 45.0%
AACTCTTGTTGAAGCCCATG+TGG + chr2_3:35811052-35811071 Msa0289580:CDS 45.0%
! CAGTAGTCTTGACATCCACA+TGG - chr2_3:35811070-35811089 None:intergenic 45.0%
ACATGTGTTGGATACCGTGT+TGG - chr2_3:35811255-35811274 None:intergenic 45.0%
TGTTCAGATCCGTAGGAAGA+TGG + chr2_3:35811404-35811423 Msa0289580:intron 45.0%
ATCTCCTTCCCAATCATCTC+GGG - chr2_3:35811492-35811511 None:intergenic 45.0%
CAAGGGGTAAATACTAGACG+TGG - chr2_3:35811523-35811542 None:intergenic 45.0%
GGATGAACACATTCTGCAAG+GGG - chr2_3:35811539-35811558 None:intergenic 45.0%
CGGATGAACACATTCTGCAA+GGG - chr2_3:35811540-35811559 None:intergenic 45.0%
TCGGATGAACACATTCTGCA+AGG - chr2_3:35811541-35811560 None:intergenic 45.0%
GGTTCATGGAGATTACTCTG+AGG + chr2_3:35812208-35812227 Msa0289580:intron 45.0%
! GGAGATTACTCTGAGGATGT+TGG + chr2_3:35812215-35812234 Msa0289580:CDS 45.0%
ATGTTGGCACAAAGGTAGAG+AGG + chr2_3:35812231-35812250 Msa0289580:CDS 45.0%
! GTTTCTCACCCCAAGTCTTT+TGG + chr2_3:35812506-35812525 Msa0289580:three_prime_UTR 45.0%
GGACGCAAAACCAAAAGACT+TGG - chr2_3:35812519-35812538 None:intergenic 45.0%
!! ATATTATGAAAATAAATATT+GGG - chr2_3:35811658-35811677 None:intergenic 5.0%
!!! AACAAAATTAAAATTTTAAA+GGG - chr2_3:35812082-35812101 None:intergenic 5.0%
!!! AAACAAAATTAAAATTTTAA+AGG - chr2_3:35812083-35812102 None:intergenic 5.0%
AACAGTGAAACCATGGCCGT+TGG + chr2_3:35809404-35809423 Msa0289580:exon 50.0%
CTTGTTCTTACCAACGGCCA+TGG - chr2_3:35809417-35809436 None:intergenic 50.0%
! TGGCCGTTGGTAAGAACAAG+CGG + chr2_3:35809417-35809436 Msa0289580:CDS 50.0%
! CGGATCTCTAAGGGGAAGAA+AGG + chr2_3:35809437-35809456 Msa0289580:CDS 50.0%
TCTTGCCGACATTCTTCACC+TGG - chr2_3:35809623-35809642 None:intergenic 50.0%
!! TGTTGGTCTTGCTTGTGGCA+GGG - chr2_3:35810416-35810435 None:intergenic 50.0%
!! ATGTTGGTCTTGCTTGTGGC+AGG - chr2_3:35810417-35810436 None:intergenic 50.0%
TGAGGTCATTGGTGCGTAAG+TGG + chr2_3:35811027-35811046 Msa0289580:CDS 50.0%
TACCAAGAGGAGAGCTAACC+AGG + chr2_3:35811124-35811143 Msa0289580:CDS 50.0%
CATAACAGGTCCTCTTCACC+TGG - chr2_3:35811145-35811164 None:intergenic 50.0%
CATTCCCGAGATGATTGGGA+AGG + chr2_3:35811485-35811504 Msa0289580:CDS 50.0%
! CTCTGAGGATGTTGGCACAA+AGG + chr2_3:35812223-35812242 Msa0289580:CDS 50.0%
AGAGAGGCCTGCTGATGAAA+TGG + chr2_3:35812247-35812266 Msa0289580:CDS 50.0%
GCCTGCTGATGAAATGGTGA+CGG + chr2_3:35812253-35812272 Msa0289580:CDS 50.0%
TCCGTCACCATTTCATCAGC+AGG - chr2_3:35812257-35812276 None:intergenic 50.0%
!! TGCTGATGAAATGGTGACGG+AGG + chr2_3:35812256-35812275 Msa0289580:CDS 50.0%
TATGCATGCTATTGGGGAGC+TGG + chr2_3:35812420-35812439 Msa0289580:intron 50.0%
ATGCATGCTATTGGGGAGCT+GGG + chr2_3:35812421-35812440 Msa0289580:intron 50.0%
ACCCTCGTGTCTCGTACTCA+GGG + chr2_3:35809642-35809661 Msa0289580:CDS 55.0%
ACCCTGAGTACGAGACACGA+GGG - chr2_3:35809646-35809665 None:intergenic 55.0%
TACCCTGAGTACGAGACACG+AGG - chr2_3:35809647-35809666 None:intergenic 55.0%
! GTCTCGTACTCAGGGTACCA+AGG + chr2_3:35809650-35809669 Msa0289580:CDS 55.0%
CATGGGAATGTCATGTCCCC+TGG - chr2_3:35810519-35810538 None:intergenic 55.0%
GGGACGAAGACCATGCATTC+AGG + chr2_3:35810832-35810851 Msa0289580:CDS 55.0%
! CACCTGGTTAGCTCTCCTCT+TGG - chr2_3:35811129-35811148 None:intergenic 55.0%
GGAGAGCTAACCAGGTGAAG+AGG + chr2_3:35811132-35811151 Msa0289580:CDS 55.0%
GACCCTCGTGTCTCGTACTC+AGG + chr2_3:35809641-35809660 Msa0289580:CDS 60.0%
CTTGTGGCAGGGCAGAAGTG+GGG - chr2_3:35810405-35810424 None:intergenic 60.0%
GCTTGTGGCAGGGCAGAAGT+GGG - chr2_3:35810406-35810425 None:intergenic 60.0%
TGCTTGTGGCAGGGCAGAAG+TGG - chr2_3:35810407-35810426 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 35809349 35812631 35809349 ID=Msa0289580;Name=Msa0289580
chr2_3 mRNA 35809349 35812631 35809349 ID=Msa0289580-mRNA-1;Parent=Msa0289580;Name=Msa0289580-mRNA-1;_AED=0.10;_eAED=0.10;_QI=67|1|1|1|0.83|0.71|7|294|261
chr2_3 exon 35809349 35809474 35809349 ID=Msa0289580-mRNA-1:exon:11711;Parent=Msa0289580-mRNA-1
chr2_3 exon 35809566 35809671 35809566 ID=Msa0289580-mRNA-1:exon:11712;Parent=Msa0289580-mRNA-1
chr2_3 exon 35810774 35810911 35810774 ID=Msa0289580-mRNA-1:exon:11713;Parent=Msa0289580-mRNA-1
chr2_3 exon 35811002 35811187 35811002 ID=Msa0289580-mRNA-1:exon:11714;Parent=Msa0289580-mRNA-1
chr2_3 exon 35811411 35811611 35811411 ID=Msa0289580-mRNA-1:exon:11715;Parent=Msa0289580-mRNA-1
chr2_3 exon 35812209 35812427 35812209 ID=Msa0289580-mRNA-1:exon:11716;Parent=Msa0289580-mRNA-1
chr2_3 exon 35812461 35812631 35812461 ID=Msa0289580-mRNA-1:exon:11717;Parent=Msa0289580-mRNA-1
chr2_3 five_prime_UTR 35809349 35809415 35809349 ID=Msa0289580-mRNA-1:five_prime_utr;Parent=Msa0289580-mRNA-1
chr2_3 CDS 35809416 35809474 35809416 ID=Msa0289580-mRNA-1:cds;Parent=Msa0289580-mRNA-1
chr2_3 CDS 35809566 35809671 35809566 ID=Msa0289580-mRNA-1:cds;Parent=Msa0289580-mRNA-1
chr2_3 CDS 35810774 35810911 35810774 ID=Msa0289580-mRNA-1:cds;Parent=Msa0289580-mRNA-1
chr2_3 CDS 35811002 35811187 35811002 ID=Msa0289580-mRNA-1:cds;Parent=Msa0289580-mRNA-1
chr2_3 CDS 35811411 35811611 35811411 ID=Msa0289580-mRNA-1:cds;Parent=Msa0289580-mRNA-1
chr2_3 CDS 35812209 35812304 35812209 ID=Msa0289580-mRNA-1:cds;Parent=Msa0289580-mRNA-1
chr2_3 three_prime_UTR 35812305 35812427 35812305 ID=Msa0289580-mRNA-1:three_prime_utr;Parent=Msa0289580-mRNA-1
chr2_3 three_prime_UTR 35812461 35812631 35812461 ID=Msa0289580-mRNA-1:three_prime_utr;Parent=Msa0289580-mRNA-1
Gene Sequence

>Msa0289580

ATGGCCGTTGGTAAGAACAAGCGGATCTCTAAGGGGAAGAAAGGTGGCAAGAAGAAAGCTGCTGATCCATTTGCCAAGAAGGATTGGTATGATATTAAGGCTCCTTCAGTTTTCCAGGTGAAGAATGTCGGCAAGACCCTCGTGTCTCGTACTCAGGGTACCAAGATTGCTTCAGATGGACTCAAGCATAGAGTGTTTGAGGTTTCATTGGCTGATCTTCAAGGGGACGAAGACCATGCATTCAGGAAGATTAGGTTGAGAGCTGAAGATGTTCAAGGGAAAAATCTTTTGACAAATTTCTGGGGGATGAATTTCACAACTGACAAACTGAGGTCATTGGTGCGTAAGTGGCAAACTCTTGTTGAAGCCCATGTGGATGTCAAGACTACTGATAATTACACATTGAGGATGTTTTGCATTGGCTTTACCAAGAGGAGAGCTAACCAGGTGAAGAGGACCTGTTATGCACAATCTAGTCAGATTAGACAGATCCGTAGGAAGATGGTTGAGATCATGATCAACCAAGCATCATCCTGTGATTTGAAGGAATTGGTCCGCAAATTCATTCCCGAGATGATTGGGAAGGAGATTGAGAAAGCCACGTCTAGTATTTACCCCTTGCAGAATGTGTTCATCCGAAAAGTGAAGATCCTTAAAGCTCCCAAGTTTGATCTTGGAAAATTGATGGAGGTTCATGGAGATTACTCTGAGGATGTTGGCACAAAGGTAGAGAGGCCTGCTGATGAAATGGTGACGGAGGAACCTACTGAAATTGTTGGAGCTTGA

Protein sequence

>Msa0289580

MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASDGLKHRVFEVSLADLQGDEDHAFRKIRLRAEDVQGKNLLTNFWGMNFTTDKLRSLVRKWQTLVEAHVDVKTTDNYTLRMFCIGFTKRRANQVKRTCYAQSSQIRQIRRKMVEIMINQASSCDLKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGTKVERPADEMVTEEPTEIVGA*