AlfalfaGEDB | Msa0289580

M. sativa cultivar zhongmu-4 / Msa0289580

KEGG: K02984
GO: -
PFAM: PF01015.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0289580	XP_013469779.1	97.701	261	6	0	1	261	1	261	0.0	530

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0289580	sp\|Q8GTE3\|RS3A_CICAR	92.720	261	19	0	1	261	1	261	4.49e-175	485

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0289580	B7FLW8	97.701	261	6	0	1	261	1	261	0.0	530

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000100	Msa0289580	0.804997	1.651108e-49	-8.615850e-47
Msa0002750	Msa0289580	0.909482	5.427544e-82	-8.615850e-47
Msa0002790	Msa0289580	0.909764	3.970644e-82	-8.615850e-47
Msa0003720	Msa0289580	0.801469	8.873619e-49	-8.615850e-47
Msa0003780	Msa0289580	0.865748	4.714381e-65	-8.615850e-47
Msa0022970	Msa0289580	0.877694	5.116056e-69	-8.615850e-47
Msa0024710	Msa0289580	0.808375	3.194588e-50	-8.615850e-47
Msa0027260	Msa0289580	0.849996	2.258395e-60	-8.615850e-47
Msa0032780	Msa0289580	0.807060	6.078189e-50	-8.615850e-47
Msa0032810	Msa0289580	0.833865	4.171654e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0289580	MtrunA17_Chr1g0204941	97.701	261	6	1	261	1	261	0.0	530
Msa0289580	MtrunA17_Chr3g0081171	95.402	261	12	1	261	1	261	2.86e-180	495
Msa0289580	MtrunA17_Chr5g0394611	94.636	261	14	1	261	1	261	7.67e-179	492

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0289580	AT3G04840.1	85.115	262	38	1	1	261	1	262	1.75e-163	453
Msa0289580	AT4G34670.1	85.496	262	37	1	1	261	1	262	4.54e-163	452

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Find 89 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTCCCAAGTTTGATCT+TGG	0.357514	2_3:+35811576	Msa0289580:CDS
AAATTCATTCCCGAGATGAT+TGG	0.381702	2_3:+35811480	Msa0289580:CDS
AACAGTGAAACCATGGCCGT+TGG	0.599680	2_3:+35809404	Msa0289580:exon
AACTCTTGTTGAAGCCCATG+TGG	0.622205	2_3:+35811052	Msa0289580:CDS
AACTGACAAACTGAGGTCAT+TGG	0.506332	2_3:+35811016	Msa0289580:CDS
AAGAACAAGCGGATCTCTAA+GGG	0.521243	2_3:+35809428	Msa0289580:CDS
AATATCATACCAATCCTTCT+TGG	0.295389	2_3:-35809580	None:intergenic
AATCTCCTTCCCAATCATCT+CGG	0.535678	2_3:-35811490	None:intergenic
AATTCATTCCCGAGATGATT+GGG	0.437177	2_3:+35811481	Msa0289580:CDS
ACAATCTAGTCAGATTAGAC+AGG	0.580594	2_3:+35811166	Msa0289580:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATATCATACCAATCCTTCT+TGG	-	chr2_3:35809583-35809602	None:intergenic	30.0%
TAAGCTGAAAAAACATCTCA+TGG	+	chr2_3:35809943-35809962	Msa0289580:intron	30.0%
GAACATAAGTAACTAAGTGA+CGG	-	chr2_3:35810004-35810023	None:intergenic	30.0%
GTTACTTATGTTCGTAGATA+CGG	+	chr2_3:35810011-35810030	Msa0289580:intron	30.0%
AGAAAATGTTGTCAAATAGC+GGG	-	chr2_3:35810192-35810211	None:intergenic	30.0%
CGAGAATAAAAATGAAGACA+TGG	-	chr2_3:35810537-35810556	None:intergenic	30.0%
GTTGCTGAAATTTGATCAAT+TGG	+	chr2_3:35810701-35810720	Msa0289580:intron	30.0%
CTACTGATAATTACACATTG+AGG	+	chr2_3:35811084-35811103	Msa0289580:CDS	30.0%
GTTTGATCTTGGAAAATTGA+TGG	+	chr2_3:35811587-35811606	Msa0289580:CDS	30.0%
AAATCAGATATGCATGCTAT+TGG	+	chr2_3:35812412-35812431	Msa0289580:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	35809349	35812631	35809349	ID=Msa0289580;Name=Msa0289580
chr2_3	mRNA	35809349	35812631	35809349	ID=Msa0289580-mRNA-1;Parent=Msa0289580;Name=Msa0289580-mRNA-1;_AED=0.10;_eAED=0.10;_QI=67\|1\|1\|1\|0.83\|0.71\|7\|294\|261
chr2_3	exon	35809349	35809474	35809349	ID=Msa0289580-mRNA-1:exon:11711;Parent=Msa0289580-mRNA-1
chr2_3	exon	35809566	35809671	35809566	ID=Msa0289580-mRNA-1:exon:11712;Parent=Msa0289580-mRNA-1
chr2_3	exon	35810774	35810911	35810774	ID=Msa0289580-mRNA-1:exon:11713;Parent=Msa0289580-mRNA-1
chr2_3	exon	35811002	35811187	35811002	ID=Msa0289580-mRNA-1:exon:11714;Parent=Msa0289580-mRNA-1
chr2_3	exon	35811411	35811611	35811411	ID=Msa0289580-mRNA-1:exon:11715;Parent=Msa0289580-mRNA-1
chr2_3	exon	35812209	35812427	35812209	ID=Msa0289580-mRNA-1:exon:11716;Parent=Msa0289580-mRNA-1
chr2_3	exon	35812461	35812631	35812461	ID=Msa0289580-mRNA-1:exon:11717;Parent=Msa0289580-mRNA-1
chr2_3	five_prime_UTR	35809349	35809415	35809349	ID=Msa0289580-mRNA-1:five_prime_utr;Parent=Msa0289580-mRNA-1
chr2_3	CDS	35809416	35809474	35809416	ID=Msa0289580-mRNA-1:cds;Parent=Msa0289580-mRNA-1
chr2_3	CDS	35809566	35809671	35809566	ID=Msa0289580-mRNA-1:cds;Parent=Msa0289580-mRNA-1
chr2_3	CDS	35810774	35810911	35810774	ID=Msa0289580-mRNA-1:cds;Parent=Msa0289580-mRNA-1
chr2_3	CDS	35811002	35811187	35811002	ID=Msa0289580-mRNA-1:cds;Parent=Msa0289580-mRNA-1
chr2_3	CDS	35811411	35811611	35811411	ID=Msa0289580-mRNA-1:cds;Parent=Msa0289580-mRNA-1
chr2_3	CDS	35812209	35812304	35812209	ID=Msa0289580-mRNA-1:cds;Parent=Msa0289580-mRNA-1
chr2_3	three_prime_UTR	35812305	35812427	35812305	ID=Msa0289580-mRNA-1:three_prime_utr;Parent=Msa0289580-mRNA-1
chr2_3	three_prime_UTR	35812461	35812631	35812461	ID=Msa0289580-mRNA-1:three_prime_utr;Parent=Msa0289580-mRNA-1

Gene Sequence

>Msa0289580

ATGGCCGTTGGTAAGAACAAGCGGATCTCTAAGGGGAAGAAAGGTGGCAAGAAGAAAGCTGCTGATCCATTTGCCAAGAAGGATTGGTATGATATTAAGGCTCCTTCAGTTTTCCAGGTGAAGAATGTCGGCAAGACCCTCGTGTCTCGTACTCAGGGTACCAAGATTGCTTCAGATGGACTCAAGCATAGAGTGTTTGAGGTTTCATTGGCTGATCTTCAAGGGGACGAAGACCATGCATTCAGGAAGATTAGGTTGAGAGCTGAAGATGTTCAAGGGAAAAATCTTTTGACAAATTTCTGGGGGATGAATTTCACAACTGACAAACTGAGGTCATTGGTGCGTAAGTGGCAAACTCTTGTTGAAGCCCATGTGGATGTCAAGACTACTGATAATTACACATTGAGGATGTTTTGCATTGGCTTTACCAAGAGGAGAGCTAACCAGGTGAAGAGGACCTGTTATGCACAATCTAGTCAGATTAGACAGATCCGTAGGAAGATGGTTGAGATCATGATCAACCAAGCATCATCCTGTGATTTGAAGGAATTGGTCCGCAAATTCATTCCCGAGATGATTGGGAAGGAGATTGAGAAAGCCACGTCTAGTATTTACCCCTTGCAGAATGTGTTCATCCGAAAAGTGAAGATCCTTAAAGCTCCCAAGTTTGATCTTGGAAAATTGATGGAGGTTCATGGAGATTACTCTGAGGATGTTGGCACAAAGGTAGAGAGGCCTGCTGATGAAATGGTGACGGAGGAACCTACTGAAATTGTTGGAGCTTGA

Protein sequence

>Msa0289580

MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASDGLKHRVFEVSLADLQGDEDHAFRKIRLRAEDVQGKNLLTNFWGMNFTTDKLRSLVRKWQTLVEAHVDVKTTDNYTLRMFCIGFTKRRANQVKRTCYAQSSQIRQIRRKMVEIMINQASSCDLKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGTKVERPADEMVTEEPTEIVGA*