AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0603320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0603320 MtrunA17_Chr4g0031531 100.000 93 0 0 1 93 1 93 1.98e-66 194
Msa0603320 MtrunA17_Chr4g0009801 59.140 93 38 0 1 93 1 93 1.75e-40 129
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0603320 AT3G46560.1 78.495 93 20 0 1 93 1 93 4.58e-51 155

Find 30 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGATTATACGCAGTGATTT+AGG 0.125954 4_2:-47807537 None:intergenic
CAAAAGCATGATTGCTGATA+TGG 0.238381 4_2:+47807575 Msa0603320:CDS
TCTTCTTCCACACTTGAGTT+AGG 0.270806 4_2:+47807475 Msa0603320:five_prime_UTR
CGATTATACGCAGTGATTTA+GGG 0.278105 4_2:-47807536 None:intergenic
TATAATCGTTCGATCCAAAA+TGG 0.326606 4_2:+47807551 Msa0603320:exon
AACCTCACCTGTCACGGATT+TGG 0.342119 4_2:-47807650 None:intergenic
TGAATAGTGATACTAAATAT+TGG 0.363478 4_2:-47811236 None:intergenic
CTTCTTCCACACTTGAGTTA+GGG 0.373451 4_2:+47807476 Msa0603320:five_prime_UTR
TGAGTTAGGGTTTATCTTTA+CGG 0.378081 4_2:+47807489 Msa0603320:five_prime_UTR
CCAGGTTATTATACATTCTC+AGG 0.398941 4_2:-47810852 None:intergenic
AATCTTGAGTTGCAGCTCCT+TGG 0.400935 4_2:-47811014 None:intergenic
ATTCTTTGTTTATCAGCCTC+TGG 0.451877 4_2:-47807606 None:intergenic
AGAGGCTGATAAACAAAGAA+TGG 0.503860 4_2:+47807608 Msa0603320:CDS
ATCAGCTCCAAATCCGTGAC+AGG 0.514968 4_2:+47807643 Msa0603320:CDS
CTCTGCACATCTTCGAACAC+AGG 0.526331 4_2:-47810941 None:intergenic
TTTGGGAACCTCACCTGTCA+CGG 0.540460 4_2:-47807656 None:intergenic
CTGAAGCACTCTATGCGTGT+TGG 0.545186 4_2:+47810970 Msa0603320:CDS
GATTTGGAGCTGATCGATCA+TGG 0.557131 4_2:-47807634 None:intergenic
CCTGAGAATGTATAATAACC+TGG 0.571370 4_2:+47810852 Msa0603320:CDS
CATGAAAGCATCTCTCCACC+AGG 0.576768 4_2:-47810870 None:intergenic
ACTCTATGCGTGTTGGCATG+AGG 0.597417 4_2:+47810977 Msa0603320:CDS
TAAATCCCTGCAAAAGCAAG+AGG 0.610554 4_2:+47810915 Msa0603320:CDS
GGAGCTGCAACTCAAGATTG+AGG 0.617510 4_2:+47811018 Msa0603320:CDS
GATAAACCCTAACTCAAGTG+TGG 0.619830 4_2:-47807482 None:intergenic
ATATTGGCAATCAAGAATGA+CGG 0.650436 4_2:-47811220 None:intergenic
AGGTTTGCTGAGCTCAACCA+AGG 0.659807 4_2:+47810997 Msa0603320:CDS
GAGATGCTTTCATGATTGTG+TGG 0.661772 4_2:+47810879 Msa0603320:CDS
AAGAAGATGATATATATACT+AGG 0.665897 4_2:-47807459 None:intergenic
TGATATGGAAAATCTTCCAG+AGG 0.691125 4_2:+47807590 Msa0603320:CDS
GAGAATGTATAATAACCTGG+TGG 0.692374 4_2:+47810855 Msa0603320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATGTTATTTTTATTTTTT+TGG + chr4_2:47808553-47808572 Msa0603320:intron 10.0%
!!! TCATATATATTTTAAGATAT+AGG + chr4_2:47808582-47808601 Msa0603320:intron 10.0%
!! TAATAAATTAAGATTTAAAC+TGG + chr4_2:47808866-47808885 Msa0603320:intron 10.0%
!!! AGATTAATTTTTCAAATTTT+TGG + chr4_2:47808899-47808918 Msa0603320:intron 10.0%
!!! GATTAATTTTTCAAATTTTT+GGG + chr4_2:47808900-47808919 Msa0603320:intron 10.0%
!! TAATTTATTAGAACTTATAA+CGG - chr4_2:47810646-47810665 None:intergenic 10.0%
!!! ATAATGTGTTGAATTTATTT+TGG + chr4_2:47807823-47807842 Msa0603320:intron 15.0%
!!! TTGAATTTATTTTGGAATTT+GGG + chr4_2:47807831-47807850 Msa0603320:intron 15.0%
!! ATATAATGTTCTATTTAATG+TGG + chr4_2:47808205-47808224 Msa0603320:intron 15.0%
!! CTTAATTTATTAGACTTTAT+TGG - chr4_2:47808858-47808877 None:intergenic 15.0%
!! AATTACTTGTTCATTAAATT+GGG + chr4_2:47809164-47809183 Msa0603320:intron 15.0%
!! ACATTAAATAGATCATTAAA+CGG - chr4_2:47809229-47809248 None:intergenic 15.0%
!!! TGAATCTTTTTTAAAATTTG+AGG + chr4_2:47809692-47809711 Msa0603320:intron 15.0%
!! AATAATTTGAGCTTATTTAT+TGG - chr4_2:47810470-47810489 None:intergenic 15.0%
!! AAAGTCATATGTAAAATAAA+CGG - chr4_2:47810696-47810715 None:intergenic 15.0%
!! AAGAAGATGATATATATACT+AGG - chr4_2:47807462-47807481 None:intergenic 20.0%
!! AAAAAAACCTAAACTTTACA+AGG - chr4_2:47807773-47807792 None:intergenic 20.0%
!!! GTTGAATTTATTTTGGAATT+TGG + chr4_2:47807830-47807849 Msa0603320:intron 20.0%
!!! TGAATTTATTTTGGAATTTG+GGG + chr4_2:47807832-47807851 Msa0603320:intron 20.0%
!!! CATCGTAATTTGTAAATAAT+TGG + chr4_2:47807858-47807877 Msa0603320:intron 20.0%
!! TTGGTTTCATAAAATATTAG+TGG + chr4_2:47808742-47808761 Msa0603320:intron 20.0%
!!! TTGAATCTGTTTTTATATTG+AGG + chr4_2:47808963-47808982 Msa0603320:intron 20.0%
!!! TGAATCTGTTTTTATATTGA+GGG + chr4_2:47808964-47808983 Msa0603320:intron 20.0%
!! GAATTACTTGTTCATTAAAT+TGG + chr4_2:47809163-47809182 Msa0603320:intron 20.0%
!! GTTTAATGATCTATTTAATG+TGG + chr4_2:47809228-47809247 Msa0603320:intron 20.0%
!!! GCTTTATTATTTACTCATTT+TGG + chr4_2:47809515-47809534 Msa0603320:intron 20.0%
!!! CTTTTTTTTCTTTCTTTTGT+TGG + chr4_2:47809649-47809668 Msa0603320:intron 20.0%
!! TCAATATAGTACTTTACTTA+GGG - chr4_2:47810506-47810525 None:intergenic 20.0%
!!! ATTTTACATATGACTTTGTT+AGG + chr4_2:47810699-47810718 Msa0603320:intron 20.0%
!!! TTTTACATATGACTTTGTTA+GGG + chr4_2:47810700-47810719 Msa0603320:intron 20.0%
!! TTATTGCTTCATTACATTAT+GGG + chr4_2:47810730-47810749 Msa0603320:intron 20.0%
!! TGAATAGTGATACTAAATAT+TGG - chr4_2:47811239-47811258 None:intergenic 20.0%
!! AAAAACGAAGCAATGATTTT+GGG - chr4_2:47807676-47807695 None:intergenic 25.0%
!! AAAAAACGAAGCAATGATTT+TGG - chr4_2:47807677-47807696 None:intergenic 25.0%
! ATTTCTACCTTGTAAAGTTT+AGG + chr4_2:47807763-47807782 Msa0603320:intron 25.0%
!!! TTTTTTTCTTTTTTCCCTGT+TGG + chr4_2:47807789-47807808 Msa0603320:intron 25.0%
! ATAGACAACAAAAATCAATG+TGG - chr4_2:47808187-47808206 None:intergenic 25.0%
! ACTTCAATTGTTATGACTTA+CGG + chr4_2:47808413-47808432 Msa0603320:intron 25.0%
!!! CTTCTAATGAACTAGTTTTT+GGG - chr4_2:47808671-47808690 None:intergenic 25.0%
! TAAAATATTAGTGGTGTGTT+TGG + chr4_2:47808751-47808770 Msa0603320:intron 25.0%
! AAAATATTAGTGGTGTGTTT+GGG + chr4_2:47808752-47808771 Msa0603320:intron 25.0%
! TCATGCTAATTTATAAGTTG+CGG + chr4_2:47808989-47809008 Msa0603320:intron 25.0%
! TTCATTCATCTATCACTATT+TGG + chr4_2:47809332-47809351 Msa0603320:intron 25.0%
! TATACCTTAATACAGTCTAT+AGG + chr4_2:47809358-47809377 Msa0603320:intron 25.0%
! GTAAATAATAAAGCTCAATG+TGG - chr4_2:47809509-47809528 None:intergenic 25.0%
! AAATAAATGTACAAACTTCG+AGG - chr4_2:47809600-47809619 None:intergenic 25.0%
!!! TTTTAAAATTTGAGGCTTCA+TGG + chr4_2:47809700-47809719 Msa0603320:intron 25.0%
!! CAAAATTTACCACCATTTTA+AGG - chr4_2:47809760-47809779 None:intergenic 25.0%
!!! TTTTAAGGAGAACATCAATA+TGG - chr4_2:47809803-47809822 None:intergenic 25.0%
! CAAATTATCAACATGTCATA+AGG + chr4_2:47810402-47810421 Msa0603320:intron 25.0%
! CTCAATATAGTACTTTACTT+AGG - chr4_2:47810507-47810526 None:intergenic 25.0%
! GTTATTGCTTCATTACATTA+TGG + chr4_2:47810729-47810748 Msa0603320:intron 25.0%
! TATTGCTTCATTACATTATG+GGG + chr4_2:47810731-47810750 Msa0603320:intron 25.0%
!!! ACTTTTGCTATTTTAAAGTG+AGG + chr4_2:47811095-47811114 Msa0603320:three_prime_UTR 25.0%
TGAGTTAGGGTTTATCTTTA+CGG + chr4_2:47807489-47807508 Msa0603320:five_prime_UTR 30.0%
!!! TGATTTAGGGTTTTGAGATT+GGG - chr4_2:47807526-47807545 None:intergenic 30.0%
TATAATCGTTCGATCCAAAA+TGG + chr4_2:47807551-47807570 Msa0603320:exon 30.0%
! AATCATGCTTTTGTCCATTT+TGG - chr4_2:47807568-47807587 None:intergenic 30.0%
TATGCTAATACAAACCAACA+GGG - chr4_2:47807806-47807825 None:intergenic 30.0%
TTATGCTAATACAAACCAAC+AGG - chr4_2:47807807-47807826 None:intergenic 30.0%
!!! TGTCATGTTTTTTGGAGAAT+AGG + chr4_2:47808033-47808052 Msa0603320:intron 30.0%
ATATGAGCCAATGTCTATAA+CGG + chr4_2:47808250-47808269 Msa0603320:intron 30.0%
! ATTCATCGATCAGTATTTTG+TGG + chr4_2:47808310-47808329 Msa0603320:intron 30.0%
TGTGAGTTAGGATACAAAAA+GGG - chr4_2:47808387-47808406 None:intergenic 30.0%
TTGTGAGTTAGGATACAAAA+AGG - chr4_2:47808388-47808407 None:intergenic 30.0%
! TATGTTTAGATGGAAGGTTT+TGG + chr4_2:47808436-47808455 Msa0603320:intron 30.0%
!!! CCTTCTAATGAACTAGTTTT+TGG - chr4_2:47808672-47808691 None:intergenic 30.0%
CCAAAAACTAGTTCATTAGA+AGG + chr4_2:47808669-47808688 Msa0603320:intron 30.0%
AAAACTCAATGTGGTACTTA+AGG - chr4_2:47808707-47808726 None:intergenic 30.0%
!!! GTTAGTTTTTGTTCTTCTGT+TGG + chr4_2:47808922-47808941 Msa0603320:intron 30.0%
CATGCTAATTTATAAGTTGC+GGG + chr4_2:47808990-47809009 Msa0603320:intron 30.0%
!! TTTTAAGGAGAACGTAACTA+TGG - chr4_2:47809059-47809078 None:intergenic 30.0%
AAAGTGGTAATTAAACCATG+AGG - chr4_2:47809194-47809213 None:intergenic 30.0%
ACGGATAAGAAAAATCAAAG+TGG - chr4_2:47809210-47809229 None:intergenic 30.0%
TCTACCTATAGACTGTATTA+AGG - chr4_2:47809365-47809384 None:intergenic 30.0%
! ATAGTGTTTTCATTGAGAGT+TGG - chr4_2:47809400-47809419 None:intergenic 30.0%
AGTTATGACTTAAGCCAATA+TGG + chr4_2:47809428-47809447 Msa0603320:intron 30.0%
!! TTGGTTTGTATTAGCATTAC+AGG + chr4_2:47809668-47809687 Msa0603320:intron 30.0%
! TTTTGATGTCCTCCTTAAAA+TGG + chr4_2:47809745-47809764 Msa0603320:intron 30.0%
!! AATTTACCACCATTTTAAGG+AGG - chr4_2:47809757-47809776 None:intergenic 30.0%
AGAAACATTCAAAAGTCACA+CGG - chr4_2:47809827-47809846 None:intergenic 30.0%
! TGACTTTTGAATGTTTCTTC+TGG + chr4_2:47809829-47809848 Msa0603320:intron 30.0%
TTGTGCTTTCATTAAGAGTT+AGG - chr4_2:47810141-47810160 None:intergenic 30.0%
TGAAGTTGTTTATCCAAACA+AGG - chr4_2:47810243-47810262 None:intergenic 30.0%
TTATTTCCATAAGTTGTCCA+GGG - chr4_2:47810365-47810384 None:intergenic 30.0%
CTTTCTTATCTACTCAATGT+GGG + chr4_2:47810527-47810546 Msa0603320:intron 30.0%
ATATTGGCAATCAAGAATGA+CGG - chr4_2:47811223-47811242 None:intergenic 30.0%
!!! GTGATTTAGGGTTTTGAGAT+TGG - chr4_2:47807527-47807546 None:intergenic 35.0%
CGATTATACGCAGTGATTTA+GGG - chr4_2:47807539-47807558 None:intergenic 35.0%
ACGATTATACGCAGTGATTT+AGG - chr4_2:47807540-47807559 None:intergenic 35.0%
! CAAAAGCATGATTGCTGATA+TGG + chr4_2:47807575-47807594 Msa0603320:CDS 35.0%
TGATATGGAAAATCTTCCAG+AGG + chr4_2:47807590-47807609 Msa0603320:CDS 35.0%
! ATTCTTTGTTTATCAGCCTC+TGG - chr4_2:47807609-47807628 None:intergenic 35.0%
AGAGGCTGATAAACAAAGAA+TGG + chr4_2:47807608-47807627 Msa0603320:CDS 35.0%
AATAAATGTACCCCCTTTGA+GGG - chr4_2:47807741-47807760 None:intergenic 35.0%
AAATAAATGTACCCCCTTTG+AGG - chr4_2:47807742-47807761 None:intergenic 35.0%
!! TTTTAAGGAGAACATCACTC+TGG - chr4_2:47807927-47807946 None:intergenic 35.0%
!!! CAATAGTCACACTGGTTTTA+AGG - chr4_2:47807942-47807961 None:intergenic 35.0%
! TGACTATTGAATGTTGCTTC+TGG + chr4_2:47807953-47807972 Msa0603320:intron 35.0%
!!! CTTGTAGCTGTCATGTTTTT+TGG + chr4_2:47808025-47808044 Msa0603320:intron 35.0%
! ATGCTGTCTTTTAGTACCTT+TGG + chr4_2:47808071-47808090 Msa0603320:intron 35.0%
! TGCTGTCTTTTAGTACCTTT+GGG + chr4_2:47808072-47808091 Msa0603320:intron 35.0%
CATCAAACTAACTAGTCCAT+GGG - chr4_2:47808149-47808168 None:intergenic 35.0%
!! CATGGACTAGTTAGTTTGAT+GGG + chr4_2:47808148-47808167 Msa0603320:intron 35.0%
!! ATAGACATTGGCTCATATAG+AGG - chr4_2:47808248-47808267 None:intergenic 35.0%
TGAAGTTATCGTTGTGAGTT+AGG - chr4_2:47808399-47808418 None:intergenic 35.0%
TGACTTACGGTATGTTTAGA+TGG + chr4_2:47808426-47808445 Msa0603320:intron 35.0%
TTACGGTATGTTTAGATGGA+AGG + chr4_2:47808430-47808449 Msa0603320:intron 35.0%
!!! TTTAGATGGAAGGTTTTGGA+GGG + chr4_2:47808440-47808459 Msa0603320:intron 35.0%
AATGTGGTACTTAAGGCATA+AGG - chr4_2:47808700-47808719 None:intergenic 35.0%
GTAGACAAGAAAACTCAATG+TGG - chr4_2:47808716-47808735 None:intergenic 35.0%
! TTTTCTTGTCTACTCGATGT+TGG + chr4_2:47808723-47808742 Msa0603320:intron 35.0%
! GTTTGGGTTTCAGTTCAAAA+AGG + chr4_2:47808768-47808787 Msa0603320:intron 35.0%
!!! TGAAAGTCACACTGGTTTTA+AGG - chr4_2:47809074-47809093 None:intergenic 35.0%
! GTGACTTTCAATGTTGCTTA+TGG + chr4_2:47809084-47809103 Msa0603320:intron 35.0%
!! AATGTTGCTTATGGACGTTT+TGG + chr4_2:47809093-47809112 Msa0603320:intron 35.0%
!! ATGTTGCTTATGGACGTTTT+GGG + chr4_2:47809094-47809113 Msa0603320:intron 35.0%
AGATGAATGAAGCCATGAAA+GGG - chr4_2:47809323-47809342 None:intergenic 35.0%
TAGATGAATGAAGCCATGAA+AGG - chr4_2:47809324-47809343 None:intergenic 35.0%
ACCTAATGAACAAGTCTCTA+GGG - chr4_2:47809463-47809482 None:intergenic 35.0%
! TTTTCCACCGTGCAAATTTT+AGG + chr4_2:47809621-47809640 Msa0603320:intron 35.0%
! TTTCCACCGTGCAAATTTTA+GGG + chr4_2:47809622-47809641 Msa0603320:intron 35.0%
AGTAACCCCTAAAATTTGCA+CGG - chr4_2:47809631-47809650 None:intergenic 35.0%
CTTCATGGTATGTAAGTTGT+TGG + chr4_2:47809715-47809734 Msa0603320:intron 35.0%
GAAACATTCAAAAGTCACAC+GGG - chr4_2:47809826-47809845 None:intergenic 35.0%
! AATGTTTCTTCTGGACGTTT+TGG + chr4_2:47809838-47809857 Msa0603320:intron 35.0%
! ATGTTTCTTCTGGACGTTTT+GGG + chr4_2:47809839-47809858 Msa0603320:intron 35.0%
! GGAACTACATTTTCAACAAG+TGG + chr4_2:47809860-47809879 Msa0603320:intron 35.0%
! ACTACATTTTCAACAAGTGG+TGG + chr4_2:47809863-47809882 Msa0603320:intron 35.0%
CATTAGACGAAGGCTTAATT+AGG + chr4_2:47809942-47809961 Msa0603320:intron 35.0%
TCGGCTCTTAAAGTCTTAAA+GGG - chr4_2:47810007-47810026 None:intergenic 35.0%
TTAAGAGCCGACATATACTA+CGG + chr4_2:47810016-47810035 Msa0603320:intron 35.0%
CTACAGAAAGGAATAGAATG+AGG - chr4_2:47810118-47810137 None:intergenic 35.0%
TTAAGAGTTAGGCTACAGAA+AGG - chr4_2:47810130-47810149 None:intergenic 35.0%
TTGTATTAGACTCTCCTTGT+GGG - chr4_2:47810180-47810199 None:intergenic 35.0%
TTTGTATTAGACTCTCCTTG+TGG - chr4_2:47810181-47810200 None:intergenic 35.0%
CTTATTTCCATAAGTTGTCC+AGG - chr4_2:47810366-47810385 None:intergenic 35.0%
! TTATCCTTAGTTCTCCCAAA+CGG + chr4_2:47810427-47810446 Msa0603320:intron 35.0%
TACTTTACTTAGGGTCTGTT+GGG - chr4_2:47810497-47810516 None:intergenic 35.0%
GCTTTCTTATCTACTCAATG+TGG + chr4_2:47810526-47810545 Msa0603320:intron 35.0%
CTCATGATAGATTAGTGGTA+TGG + chr4_2:47810551-47810570 Msa0603320:intron 35.0%
TATGACTTTGTTAGGGTGAT+TGG + chr4_2:47810707-47810726 Msa0603320:intron 35.0%
! TTATGGGGCTCTTGTATTTT+TGG + chr4_2:47810746-47810765 Msa0603320:intron 35.0%
TAGTTGACATATTACCAGAC+AGG + chr4_2:47810797-47810816 Msa0603320:intron 35.0%
AGTTGACATATTACCAGACA+GGG + chr4_2:47810798-47810817 Msa0603320:intron 35.0%
CCAGGTTATTATACATTCTC+AGG - chr4_2:47810855-47810874 None:intergenic 35.0%
CCTGAGAATGTATAATAACC+TGG + chr4_2:47810852-47810871 Msa0603320:CDS 35.0%
GAGAATGTATAATAACCTGG+TGG + chr4_2:47810855-47810874 Msa0603320:CDS 35.0%
TCTTCTTCCACACTTGAGTT+AGG + chr4_2:47807475-47807494 Msa0603320:five_prime_UTR 40.0%
CTTCTTCCACACTTGAGTTA+GGG + chr4_2:47807476-47807495 Msa0603320:five_prime_UTR 40.0%
GATAAACCCTAACTCAAGTG+TGG - chr4_2:47807485-47807504 None:intergenic 40.0%
ATAAATGTACCCCCTTTGAG+GGG - chr4_2:47807740-47807759 None:intergenic 40.0%
GCAACATTCAATAGTCACAC+TGG - chr4_2:47807950-47807969 None:intergenic 40.0%
!! AATGTTGCTTCTGGACGTTT+TGG + chr4_2:47807962-47807981 Msa0603320:intron 40.0%
!! ATGTTGCTTCTGGACGTTTT+GGG + chr4_2:47807963-47807982 Msa0603320:intron 40.0%
TACCTTTGGGCTCTGTTTAA+TGG + chr4_2:47808085-47808104 Msa0603320:intron 40.0%
TTCCATTAAACAGAGCCCAA+AGG - chr4_2:47808090-47808109 None:intergenic 40.0%
CCATCAAACTAACTAGTCCA+TGG - chr4_2:47808150-47808169 None:intergenic 40.0%
!! CCATGGACTAGTTAGTTTGA+TGG + chr4_2:47808147-47808166 Msa0603320:intron 40.0%
ACAAAAAGGGCTGCCTATAT+AGG - chr4_2:47808374-47808393 None:intergenic 40.0%
!! GTTTAGATGGAAGGTTTTGG+AGG + chr4_2:47808439-47808458 Msa0603320:intron 40.0%
!!! TTAGATGGAAGGTTTTGGAG+GGG + chr4_2:47808441-47808460 Msa0603320:intron 40.0%
!! AGGAGGTTTTTGAAGGGTTT+GGG - chr4_2:47808617-47808636 None:intergenic 40.0%
!! TTCTGGAGGAGGTTTTTGAA+GGG - chr4_2:47808623-47808642 None:intergenic 40.0%
!! TTTCTGGAGGAGGTTTTTGA+AGG - chr4_2:47808624-47808643 None:intergenic 40.0%
!!! AACTAGTTTTTGGGTTCTCC+TGG - chr4_2:47808662-47808681 None:intergenic 40.0%
! CTACTAGTCTAGTGTGTGTT+TGG - chr4_2:47808828-47808847 None:intergenic 40.0%
AGCAACATTGAAAGTCACAC+TGG - chr4_2:47809082-47809101 None:intergenic 40.0%
ATTAAATTGGGAGAGCCTCA+TGG + chr4_2:47809176-47809195 Msa0603320:intron 40.0%
AAGGGATAAAAGTGGGTGAA+AGG - chr4_2:47809298-47809317 None:intergenic 40.0%
AAGGGGAAAGGGATAAAAGT+GGG - chr4_2:47809305-47809324 None:intergenic 40.0%
AAAGGGGAAAGGGATAAAAG+TGG - chr4_2:47809306-47809325 None:intergenic 40.0%
TTTATCCCTTTCCCCTTTCA+TGG + chr4_2:47809308-47809327 Msa0603320:intron 40.0%
GATGAATGAAGCCATGAAAG+GGG - chr4_2:47809322-47809341 None:intergenic 40.0%
TAGGGTTAGACTCTCCATAT+TGG - chr4_2:47809445-47809464 None:intergenic 40.0%
! ACCCTAGAGACTTGTTCATT+AGG + chr4_2:47809459-47809478 Msa0603320:intron 40.0%
CACCTAATGAACAAGTCTCT+AGG - chr4_2:47809464-47809483 None:intergenic 40.0%
! CTAGAGACTTGTTCATTAGG+TGG + chr4_2:47809462-47809481 Msa0603320:intron 40.0%
! TTCCACCGTGCAAATTTTAG+GGG + chr4_2:47809623-47809642 Msa0603320:intron 40.0%
TGATGTCCTCCTTAAAATGG+TGG + chr4_2:47809748-47809767 Msa0603320:intron 40.0%
! CAAAAGTCACACGGGTTTTA+AGG - chr4_2:47809818-47809837 None:intergenic 40.0%
CTCACTAGTTCATTAGACGA+AGG + chr4_2:47809932-47809951 Msa0603320:intron 40.0%
! GTCGGCTCTTAAAGTCTTAA+AGG - chr4_2:47810008-47810027 None:intergenic 40.0%
GTGAAAGCCGTAGTATATGT+CGG - chr4_2:47810026-47810045 None:intergenic 40.0%
AAATGAGTGAACCTGCCAAA+GGG - chr4_2:47810069-47810088 None:intergenic 40.0%
CATCAAGTCTAAGAACCTCA+TGG + chr4_2:47810210-47810229 Msa0603320:intron 40.0%
AAACAAGGTCTTAAGCCATG+AGG - chr4_2:47810228-47810247 None:intergenic 40.0%
TCATGGCTTAAGACCTTGTT+TGG + chr4_2:47810227-47810246 Msa0603320:intron 40.0%
!! GCTATTTTCATAAGTTGCCC+TGG + chr4_2:47810345-47810364 Msa0603320:intron 40.0%
AAACACTTGTGAGACCGTTT+GGG - chr4_2:47810444-47810463 None:intergenic 40.0%
GTACTTTACTTAGGGTCTGT+TGG - chr4_2:47810498-47810517 None:intergenic 40.0%
TGGGTCTCATGATAGATTAG+TGG + chr4_2:47810546-47810565 Msa0603320:intron 40.0%
!! ATAACGGACTAGAGTGTGTT+TGG - chr4_2:47810630-47810649 None:intergenic 40.0%
CCAGAATGAAGAGTTACAGA+GGG - chr4_2:47810673-47810692 None:intergenic 40.0%
CAAAATCAGATAACCCTGTC+TGG - chr4_2:47810814-47810833 None:intergenic 40.0%
GAGATGCTTTCATGATTGTG+TGG + chr4_2:47810879-47810898 Msa0603320:CDS 40.0%
TAAATCCCTGCAAAAGCAAG+AGG + chr4_2:47810915-47810934 Msa0603320:CDS 40.0%
! GATTTGGAGCTGATCGATCA+TGG - chr4_2:47807637-47807656 None:intergenic 45.0%
ACTTATGTTACCCCCCTCAA+AGG + chr4_2:47807725-47807744 Msa0603320:intron 45.0%
CTTATGTTACCCCCCTCAAA+GGG + chr4_2:47807726-47807745 Msa0603320:intron 45.0%
TTATGTTACCCCCCTCAAAG+GGG + chr4_2:47807727-47807746 Msa0603320:intron 45.0%
! TAAATGTACCCCCTTTGAGG+GGG - chr4_2:47807739-47807758 None:intergenic 45.0%
!! GACATTGGCTCATATAGAGG+TGG - chr4_2:47808245-47808264 None:intergenic 45.0%
GGGAAAGCCGTTATAGACAT+TGG - chr4_2:47808260-47808279 None:intergenic 45.0%
ATGTCTATAACGGCTTTCCC+TGG + chr4_2:47808260-47808279 Msa0603320:intron 45.0%
TCGATGAATGAAGCCACCAA+CGG - chr4_2:47808299-47808318 None:intergenic 45.0%
ATGAAGGGCTGTCTATAGGT+TGG - chr4_2:47808347-47808366 None:intergenic 45.0%
GCCTATATAGGCTGGATGAA+GGG - chr4_2:47808362-47808381 None:intergenic 45.0%
TGCCTATATAGGCTGGATGA+AGG - chr4_2:47808363-47808382 None:intergenic 45.0%
!! GGTTTTTGAAGGGTTTGGGA+TGG - chr4_2:47808613-47808632 None:intergenic 45.0%
!! GAGGAGGTTTTTGAAGGGTT+TGG - chr4_2:47808618-47808637 None:intergenic 45.0%
!!! TTAAGGGTGTTTTCTGGAGG+AGG - chr4_2:47808634-47808653 None:intergenic 45.0%
!!! AGCTTAAGGGTGTTTTCTGG+AGG - chr4_2:47808637-47808656 None:intergenic 45.0%
!!! GTGAGCTTAAGGGTGTTTTC+TGG - chr4_2:47808640-47808659 None:intergenic 45.0%
AAAACACCCTTAAGCTCACC+AGG + chr4_2:47808641-47808660 Msa0603320:intron 45.0%
TGAAGCCATGAAAGGGGAAA+GGG - chr4_2:47809316-47809335 None:intergenic 45.0%
ATGAAGCCATGAAAGGGGAA+AGG - chr4_2:47809317-47809336 None:intergenic 45.0%
AATGTGGTACTCAAGTCGTG+AGG - chr4_2:47809493-47809512 None:intergenic 45.0%
AACTTCGAGGCGTAAATCTG+AGG - chr4_2:47809587-47809606 None:intergenic 45.0%
AACCCCTAAAATTTGCACGG+TGG - chr4_2:47809628-47809647 None:intergenic 45.0%
AATGAGTGAACCTGCCAAAG+GGG - chr4_2:47810068-47810087 None:intergenic 45.0%
CAAATGAGTGAACCTGCCAA+AGG - chr4_2:47810070-47810089 None:intergenic 45.0%
TGTTATGACTTGAGCCCACA+AGG + chr4_2:47810163-47810182 Msa0603320:intron 45.0%
AAGTTGCCCTGGACAACTTA+TGG + chr4_2:47810356-47810375 Msa0603320:intron 45.0%
GAAACACTTGTGAGACCGTT+TGG - chr4_2:47810445-47810464 None:intergenic 45.0%
CCCTCTGTAACTCTTCATTC+TGG + chr4_2:47810670-47810689 Msa0603320:intron 45.0%
GCCAGAATGAAGAGTTACAG+AGG - chr4_2:47810674-47810693 None:intergenic 45.0%
!! GGTTTCCTCTTGCTTTTGCA+GGG - chr4_2:47810923-47810942 None:intergenic 45.0%
!! AGGTTTCCTCTTGCTTTTGC+AGG - chr4_2:47810924-47810943 None:intergenic 45.0%
! AATCTTGAGTTGCAGCTCCT+TGG - chr4_2:47811017-47811036 None:intergenic 45.0%
ATCAGCTCCAAATCCGTGAC+AGG + chr4_2:47807643-47807662 Msa0603320:CDS 50.0%
AACCTCACCTGTCACGGATT+TGG - chr4_2:47807653-47807672 None:intergenic 50.0%
TTTGGGAACCTCACCTGTCA+CGG - chr4_2:47807659-47807678 None:intergenic 50.0%
TATGTTACCCCCCTCAAAGG+GGG + chr4_2:47807728-47807747 Msa0603320:intron 50.0%
! AAATGTACCCCCTTTGAGGG+GGG - chr4_2:47807738-47807757 None:intergenic 50.0%
ATGAAGCCACCAACGGGAAA+GGG - chr4_2:47808292-47808311 None:intergenic 50.0%
AATGAAGCCACCAACGGGAA+AGG - chr4_2:47808293-47808312 None:intergenic 50.0%
CGATGAATGAAGCCACCAAC+GGG - chr4_2:47808298-47808317 None:intergenic 50.0%
CTGGATGAAGGGCTGTCTAT+AGG - chr4_2:47808351-47808370 None:intergenic 50.0%
GCCCTTCATCCAGCCTATAT+AGG + chr4_2:47808358-47808377 Msa0603320:intron 50.0%
AAAGGGCTGCCTATATAGGC+TGG - chr4_2:47808370-47808389 None:intergenic 50.0%
GGTTCTCCTGGTGAGCTTAA+GGG - chr4_2:47808650-47808669 None:intergenic 50.0%
ATACTACGGCTTTCACCTGC+TGG + chr4_2:47810030-47810049 Msa0603320:intron 50.0%
GGTGGTATTCCTTTCCCCTT+TGG + chr4_2:47810051-47810070 Msa0603320:intron 50.0%
GTATTCCTTTCCCCTTTGGC+AGG + chr4_2:47810055-47810074 Msa0603320:intron 50.0%
GAGACCGTTTGGGAGAACTA+AGG - chr4_2:47810434-47810453 None:intergenic 50.0%
!! CATGAAAGCATCTCTCCACC+AGG - chr4_2:47810873-47810892 None:intergenic 50.0%
CTCTGCACATCTTCGAACAC+AGG - chr4_2:47810944-47810963 None:intergenic 50.0%
! CTGAAGCACTCTATGCGTGT+TGG + chr4_2:47810970-47810989 Msa0603320:CDS 50.0%
! ACTCTATGCGTGTTGGCATG+AGG + chr4_2:47810977-47810996 Msa0603320:CDS 50.0%
!! AGGTTTGCTGAGCTCAACCA+AGG + chr4_2:47810997-47811016 Msa0603320:CDS 50.0%
GGAGCTGCAACTCAAGATTG+AGG + chr4_2:47811018-47811037 Msa0603320:CDS 50.0%
CTCCAAATCCGTGACAGGTG+AGG + chr4_2:47807648-47807667 Msa0603320:intron 55.0%
ACTAGTCCATGGGCTCGACT+CGG - chr4_2:47808139-47808158 None:intergenic 55.0%
ACGGGAAAGGGATAACGCCA+GGG - chr4_2:47808280-47808299 None:intergenic 55.0%
AACGGGAAAGGGATAACGCC+AGG - chr4_2:47808281-47808300 None:intergenic 55.0%
TGGCGTTATCCCTTTCCCGT+TGG + chr4_2:47808280-47808299 Msa0603320:intron 55.0%
CGTTATCCCTTTCCCGTTGG+TGG + chr4_2:47808283-47808302 Msa0603320:intron 55.0%
!!! GATGGAAGGTTTTGGAGGGG+AGG + chr4_2:47808444-47808463 Msa0603320:intron 55.0%
GGGTTCTCCTGGTGAGCTTA+AGG - chr4_2:47808651-47808670 None:intergenic 55.0%
GGGAAAGGAATACCACCAGC+AGG - chr4_2:47810048-47810067 None:intergenic 55.0%
GTGAACCTGCCAAAGGGGAA+AGG - chr4_2:47810063-47810082 None:intergenic 55.0%
GTTATGCCGAGTCGAGCCCA+TGG + chr4_2:47808130-47808149 Msa0603320:intron 60.0%
CTACGGCTTTCACCTGCTGG+TGG + chr4_2:47810033-47810052 Msa0603320:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 47807449 47811264 47807449 ID=Msa0603320;Name=Msa0603320
chr4_2 mRNA 47807449 47811264 47807449 ID=Msa0603320-mRNA-1;Parent=Msa0603320;Name=Msa0603320-mRNA-1;_AED=0.00;_eAED=0.00;_QI=121|1|1|1|1|1|2|226|93
chr4_2 exon 47807449 47807664 47807449 ID=Msa0603320-mRNA-1:exon:10924;Parent=Msa0603320-mRNA-1
chr4_2 exon 47810852 47811264 47810852 ID=Msa0603320-mRNA-1:exon:10925;Parent=Msa0603320-mRNA-1
chr4_2 five_prime_UTR 47807449 47807569 47807449 ID=Msa0603320-mRNA-1:five_prime_utr;Parent=Msa0603320-mRNA-1
chr4_2 CDS 47807570 47807664 47807570 ID=Msa0603320-mRNA-1:cds;Parent=Msa0603320-mRNA-1
chr4_2 CDS 47810852 47811038 47810852 ID=Msa0603320-mRNA-1:cds;Parent=Msa0603320-mRNA-1
chr4_2 three_prime_UTR 47811039 47811264 47811039 ID=Msa0603320-mRNA-1:three_prime_utr;Parent=Msa0603320-mRNA-1
Gene Sequence

>Msa0603320

ATGGACAAAAGCATGATTGCTGATATGGAAAATCTTCCAGAGGCTGATAAACAAAGAATGGCTACCATGATCGATCAGCTCCAAATCCGTGACAGCCTGAGAATGTATAATAACCTGGTGGAGAGATGCTTTCATGATTGTGTGGATACATTTAAGCATAAATCCCTGCAAAAGCAAGAGGAAACCTGTGTTCGAAGATGTGCAGAGAAATTTCTGAAGCACTCTATGCGTGTTGGCATGAGGTTTGCTGAGCTCAACCAAGGAGCTGCAACTCAAGATTGA

Protein sequence

>Msa0603320

MDKSMIADMENLPEADKQRMATMIDQLQIRDSLRMYNNLVERCFHDCVDTFKHKSLQKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAATQD*