AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0145150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0145150 MtrunA17_Chr1g0153381 99.200 125 1 0 1 125 1 125 6.34e-88 251
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0145150 AT5G42890.1 79.508 122 25 0 4 125 2 123 1.22e-68 202

Find 43 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATGTATCGAATTATTAT+TGG 0.185639 1_4:+4795965 None:intergenic
TGCATCAATCCAAGTATTAA+TGG 0.246571 1_4:+4794246 None:intergenic
CAGGGGTGCAATGAAGATTA+AGG 0.247988 1_4:-4794597 Msa0145150:CDS
GTTTCAAGTTTGAAATAGTT+TGG 0.274895 1_4:-4794313 Msa0145150:three_prime_UTR
GCTCACATCTTGGAAGGCTT+TGG 0.309953 1_4:+4794533 None:intergenic
GACTTTGTTAAGGTTGCATT+AGG 0.316740 1_4:-4794753 Msa0145150:CDS
CTCACATCTTGGAAGGCTTT+GGG 0.353213 1_4:+4794534 None:intergenic
GTATCGAATTATTATTGGTT+TGG 0.368079 1_4:+4795970 None:intergenic
TTTGATAATAATACTGTAGT+TGG 0.411015 1_4:-4794338 Msa0145150:three_prime_UTR
TCAGTTTCAAATTGCTCCTA+AGG 0.429160 1_4:-4795800 Msa0145150:intron
TACAGATGAAGACTTTGTTA+AGG 0.431661 1_4:-4794763 Msa0145150:CDS
AAGTCTATACTTGTGAATGC+TGG 0.435599 1_4:-4794206 Msa0145150:three_prime_UTR
ATGAATCAGCCATGGTGGTT+TGG 0.445740 1_4:+4795920 None:intergenic
GAAGGCTTTGGGAAGATATC+CGG 0.454252 1_4:+4794545 None:intergenic
ATGAACCCCTCTACAACCTT+AGG 0.464141 1_4:+4794420 None:intergenic
AGACATCTCTGCTCACATCT+TGG 0.471053 1_4:+4794523 None:intergenic
AGGGGTGCAATGAAGATTAA+GGG 0.479063 1_4:-4794596 Msa0145150:CDS
TAACTATAGATATACTCCTC+AGG 0.489674 1_4:+4794462 None:intergenic
GGTTCATGAGAATATAGTTA+TGG 0.510665 1_4:-4794404 Msa0145150:three_prime_UTR
ACAAGTATAGACTTAAGTAT+AGG 0.511394 1_4:+4794215 None:intergenic
AGTCTATACTTGTGAATGCT+GGG 0.521357 1_4:-4794205 Msa0145150:three_prime_UTR
ACTTTGTTAAGGTTGCATTA+GGG 0.521418 1_4:-4794752 Msa0145150:CDS
ATCATTCCTAAGGTTGTAGA+GGG 0.524810 1_4:-4794426 Msa0145150:three_prime_UTR
AGTATTATTATCAAAGACAT+TGG 0.525003 1_4:+4794346 None:intergenic
ACGTTAGATCATCATTCCTA+AGG 0.532509 1_4:-4794436 Msa0145150:three_prime_UTR
AATATAGTTATGGATAATGA+AGG 0.544077 1_4:-4794394 Msa0145150:three_prime_UTR
TTCTCCTTTCTTGAGATCAA+CGG 0.549718 1_4:+4795659 None:intergenic
TATATAGGGGCATATGAAGG+TGG 0.550169 1_4:-4794810 Msa0145150:intron
CATCATTCCTAAGGTTGTAG+AGG 0.560169 1_4:-4794427 Msa0145150:three_prime_UTR
GTGTATATAGGGGCATATGA+AGG 0.563217 1_4:-4794813 Msa0145150:intron
TATACCGTTGATCTCAAGAA+AGG 0.565878 1_4:-4795663 Msa0145150:CDS
ATATAGGGGCATATGAAGGT+GGG 0.567168 1_4:-4794809 Msa0145150:intron
ATCCACAGATTGCTTTCATG+AGG 0.575757 1_4:-4794722 Msa0145150:intron
ATCTCTGCTCACATCTTGGA+AGG 0.575766 1_4:+4794527 None:intergenic
TTTAGGCAAAGATAGTGAGA+TGG 0.592625 1_4:+4794177 None:intergenic
TGCTGCTCAGAAATTTACTC+CGG 0.597894 1_4:-4794564 Msa0145150:CDS
AACCTCATGAAAGCAATCTG+TGG 0.609703 1_4:+4794720 None:intergenic
CGATGATGAATCAGCCATGG+TGG 0.640330 1_4:+4795915 None:intergenic
ATTCGATGATGAATCAGCCA+TGG 0.650427 1_4:+4795912 None:intergenic
AAGAAAGGAGAAGTTACCAA+AGG 0.658788 1_4:-4795648 Msa0145150:intron
ATACATAACCTCAAAACCTG+AGG 0.679301 1_4:-4794478 Msa0145150:three_prime_UTR
ACGCAACAACCAAACCACCA+TGG 0.686477 1_4:-4795929 Msa0145150:exon
TCATTCCTAAGGTTGTAGAG+GGG 0.713874 1_4:-4794425 Msa0145150:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAATAATAAAGAAAAAAA+AGG + chr1_4:4794445-4794464 None:intergenic 10.0%
!!! TATAGATTTTCATTATATTA+AGG - chr1_4:4794817-4794836 Msa0145150:intron 10.0%
!!! TATTTAAAATATGAATAAAG+AGG - chr1_4:4794980-4794999 Msa0145150:intron 10.0%
!! TGAAATAATAAAGAAAAAAA+AGG + chr1_4:4794445-4794464 None:intergenic 10.0%
!!! TATAGATTTTCATTATATTA+AGG - chr1_4:4794817-4794836 Msa0145150:intron 10.0%
!!! TATTTAAAATATGAATAAAG+AGG - chr1_4:4794980-4794999 Msa0145150:intron 10.0%
!!! ATTATTATTGGTTTGGTTTT+TGG + chr1_4:4794244-4794263 None:intergenic 20.0%
!! GAAATGTATCGAATTATTAT+TGG + chr1_4:4794256-4794275 None:intergenic 20.0%
!! ACAAGAAGAGATTATAATTT+AGG + chr1_4:4794497-4794516 None:intergenic 20.0%
!! AGAAAAATGAAATTAACCTT+TGG + chr1_4:4794589-4794608 None:intergenic 20.0%
!! TGAATCAAATTGAATTGAAA+AGG + chr1_4:4794618-4794637 None:intergenic 20.0%
!!! GTTGAAAGTATCTAATATTT+TGG - chr1_4:4794686-4794705 Msa0145150:intron 20.0%
!!! CTTTTTTCTACAATTATACT+TGG - chr1_4:4795198-4795217 Msa0145150:intron 20.0%
!!! ATTAAAATTAACCAAGTTGA+TGG + chr1_4:4795338-4795357 None:intergenic 20.0%
!! AAATAATCATACATTAAGGA+CGG + chr1_4:4795381-4795400 None:intergenic 20.0%
!! AACCAAATAATCATACATTA+AGG + chr1_4:4795385-4795404 None:intergenic 20.0%
!! ATTATTTGGTTGTGTATATA+GGG - chr1_4:4795394-4795413 Msa0145150:intron 20.0%
!! AATATAGTTATGGATAATGA+AGG - chr1_4:4795824-4795843 Msa0145150:CDS 20.0%
!! AGTATTATTATCAAAGACAT+TGG + chr1_4:4795875-4795894 None:intergenic 20.0%
!!! TTTGATAATAATACTGTAGT+TGG - chr1_4:4795880-4795899 Msa0145150:CDS 20.0%
!!! ATTATTATTGGTTTGGTTTT+TGG + chr1_4:4794244-4794263 None:intergenic 20.0%
!! GAAATGTATCGAATTATTAT+TGG + chr1_4:4794256-4794275 None:intergenic 20.0%
!! ACAAGAAGAGATTATAATTT+AGG + chr1_4:4794497-4794516 None:intergenic 20.0%
!! AGAAAAATGAAATTAACCTT+TGG + chr1_4:4794589-4794608 None:intergenic 20.0%
!! TGAATCAAATTGAATTGAAA+AGG + chr1_4:4794618-4794637 None:intergenic 20.0%
!!! GTTGAAAGTATCTAATATTT+TGG - chr1_4:4794686-4794705 Msa0145150:intron 20.0%
!!! CTTTTTTCTACAATTATACT+TGG - chr1_4:4795198-4795217 Msa0145150:intron 20.0%
!!! ATTAAAATTAACCAAGTTGA+TGG + chr1_4:4795338-4795357 None:intergenic 20.0%
!! AAATAATCATACATTAAGGA+CGG + chr1_4:4795381-4795400 None:intergenic 20.0%
!! AACCAAATAATCATACATTA+AGG + chr1_4:4795385-4795404 None:intergenic 20.0%
!! ATTATTTGGTTGTGTATATA+GGG - chr1_4:4795394-4795413 Msa0145150:intron 20.0%
!! AATATAGTTATGGATAATGA+AGG - chr1_4:4795824-4795843 Msa0145150:CDS 20.0%
!! AGTATTATTATCAAAGACAT+TGG + chr1_4:4795875-4795894 None:intergenic 20.0%
!!! TTTGATAATAATACTGTAGT+TGG - chr1_4:4795880-4795899 Msa0145150:CDS 20.0%
!! AATGATTTTGCTTCTTTCTT+CGG + chr1_4:4794203-4794222 None:intergenic 25.0%
!! GTATCGAATTATTATTGGTT+TGG + chr1_4:4794251-4794270 None:intergenic 25.0%
! AAAAAACTCACCGAAAAAAT+TGG - chr1_4:4794386-4794405 Msa0145150:three_prime_UTR 25.0%
!!! ATAAACGAGACCAATTTTTT+CGG + chr1_4:4794399-4794418 None:intergenic 25.0%
! TAAAGAAAAAAAAGGACCTT+AGG + chr1_4:4794437-4794456 None:intergenic 25.0%
!! TTGTGAATTTTGCAGAAAAT+TGG - chr1_4:4794516-4794535 Msa0145150:exon 25.0%
!!! ATTGTTCTGAAATTGCTTTA+AGG - chr1_4:4794664-4794683 Msa0145150:intron 25.0%
!! AACCATAATGTCAAGATTTT+AGG - chr1_4:4794735-4794754 Msa0145150:CDS 25.0%
! ATCCTAAAATCTTGACATTA+TGG + chr1_4:4794740-4794759 None:intergenic 25.0%
!!! TAATTAGGTTGGTAAAGATA+GGG - chr1_4:4794917-4794936 Msa0145150:intron 25.0%
! GTCCTTAATGTATGATTATT+TGG - chr1_4:4795380-4795399 Msa0145150:intron 25.0%
! GATTATTTGGTTGTGTATAT+AGG - chr1_4:4795393-4795412 Msa0145150:intron 25.0%
! TTATTTGGTTGTGTATATAG+GGG - chr1_4:4795395-4795414 Msa0145150:intron 25.0%
! TAAACAAAGAAAAGCCAAAA+CGG + chr1_4:4795560-4795579 None:intergenic 25.0%
!!! GTTTCAAGTTTGAAATAGTT+TGG - chr1_4:4795905-4795924 Msa0145150:CDS 25.0%
!!! TGTTTTTTGCCATTAATACT+TGG - chr1_4:4795963-4795982 Msa0145150:five_prime_UTR 25.0%
! ACAAGTATAGACTTAAGTAT+AGG + chr1_4:4796006-4796025 None:intergenic 25.0%
!! AATGATTTTGCTTCTTTCTT+CGG + chr1_4:4794203-4794222 None:intergenic 25.0%
!! GTATCGAATTATTATTGGTT+TGG + chr1_4:4794251-4794270 None:intergenic 25.0%
! AAAAAACTCACCGAAAAAAT+TGG - chr1_4:4794386-4794405 Msa0145150:three_prime_UTR 25.0%
!!! ATAAACGAGACCAATTTTTT+CGG + chr1_4:4794399-4794418 None:intergenic 25.0%
! TAAAGAAAAAAAAGGACCTT+AGG + chr1_4:4794437-4794456 None:intergenic 25.0%
!! TTGTGAATTTTGCAGAAAAT+TGG - chr1_4:4794516-4794535 Msa0145150:exon 25.0%
!!! ATTGTTCTGAAATTGCTTTA+AGG - chr1_4:4794664-4794683 Msa0145150:intron 25.0%
!! AACCATAATGTCAAGATTTT+AGG - chr1_4:4794735-4794754 Msa0145150:CDS 25.0%
! ATCCTAAAATCTTGACATTA+TGG + chr1_4:4794740-4794759 None:intergenic 25.0%
!!! TAATTAGGTTGGTAAAGATA+GGG - chr1_4:4794917-4794936 Msa0145150:intron 25.0%
! GTCCTTAATGTATGATTATT+TGG - chr1_4:4795380-4795399 Msa0145150:intron 25.0%
! GATTATTTGGTTGTGTATAT+AGG - chr1_4:4795393-4795412 Msa0145150:intron 25.0%
! TTATTTGGTTGTGTATATAG+GGG - chr1_4:4795395-4795414 Msa0145150:intron 25.0%
! TAAACAAAGAAAAGCCAAAA+CGG + chr1_4:4795560-4795579 None:intergenic 25.0%
!!! GTTTCAAGTTTGAAATAGTT+TGG - chr1_4:4795905-4795924 Msa0145150:CDS 25.0%
!!! TGTTTTTTGCCATTAATACT+TGG - chr1_4:4795963-4795982 Msa0145150:five_prime_UTR 25.0%
! ACAAGTATAGACTTAAGTAT+AGG + chr1_4:4796006-4796025 None:intergenic 25.0%
!!! ATTATTGGTTTGGTTTTTGG+TGG + chr1_4:4794241-4794260 None:intergenic 30.0%
AATTGTAGTTACTGATGCAT+TGG - chr1_4:4794783-4794802 Msa0145150:CDS 30.0%
!! GTAATTAGGTTGGTAAAGAT+AGG - chr1_4:4794916-4794935 Msa0145150:intron 30.0%
TGAATAAAGAGGTTGAAATC+TGG - chr1_4:4794991-4795010 Msa0145150:intron 30.0%
TAGATGCTTTCGATCTATTT+AGG - chr1_4:4795092-4795111 Msa0145150:intron 30.0%
TAGGTTATAGATTGTTGTCT+AGG - chr1_4:4795111-4795130 Msa0145150:intron 30.0%
! TATGACTAAAAGTGAGTTGA+AGG - chr1_4:4795241-4795260 Msa0145150:intron 30.0%
AAGGTAAAATGATCTGTGTT+TGG - chr1_4:4795260-4795279 Msa0145150:intron 30.0%
! AATTTTGTCCCCTATAAAAG+TGG - chr1_4:4795301-4795320 Msa0145150:intron 30.0%
!!! TGTTTTGGTCCACTTTTATA+GGG + chr1_4:4795313-4795332 None:intergenic 30.0%
!!! ATGTTTTGGTCCACTTTTAT+AGG + chr1_4:4795314-4795333 None:intergenic 30.0%
GTAAATGAAAAAGTTGCATC+TGG + chr1_4:4795438-4795457 None:intergenic 30.0%
TACAGATGAAGACTTTGTTA+AGG - chr1_4:4795455-4795474 Msa0145150:intron 30.0%
ACTTTGTTAAGGTTGCATTA+GGG - chr1_4:4795466-4795485 Msa0145150:intron 30.0%
!!! TGTTCTCTTTTTTTCCGTTT+TGG - chr1_4:4795543-4795562 Msa0145150:intron 30.0%
AATAGATACAAGGAAGTGAA+TGG + chr1_4:4795584-4795603 None:intergenic 30.0%
TAACTATAGATATACTCCTC+AGG + chr1_4:4795759-4795778 None:intergenic 30.0%
GGTTCATGAGAATATAGTTA+TGG - chr1_4:4795814-4795833 Msa0145150:CDS 30.0%
TGCATCAATCCAAGTATTAA+TGG + chr1_4:4795975-4795994 None:intergenic 30.0%
!!! ATTATTGGTTTGGTTTTTGG+TGG + chr1_4:4794241-4794260 None:intergenic 30.0%
AATTGTAGTTACTGATGCAT+TGG - chr1_4:4794783-4794802 Msa0145150:CDS 30.0%
!! GTAATTAGGTTGGTAAAGAT+AGG - chr1_4:4794916-4794935 Msa0145150:intron 30.0%
TGAATAAAGAGGTTGAAATC+TGG - chr1_4:4794991-4795010 Msa0145150:intron 30.0%
TAGATGCTTTCGATCTATTT+AGG - chr1_4:4795092-4795111 Msa0145150:intron 30.0%
TAGGTTATAGATTGTTGTCT+AGG - chr1_4:4795111-4795130 Msa0145150:intron 30.0%
! TATGACTAAAAGTGAGTTGA+AGG - chr1_4:4795241-4795260 Msa0145150:intron 30.0%
AAGGTAAAATGATCTGTGTT+TGG - chr1_4:4795260-4795279 Msa0145150:intron 30.0%
! AATTTTGTCCCCTATAAAAG+TGG - chr1_4:4795301-4795320 Msa0145150:intron 30.0%
!!! TGTTTTGGTCCACTTTTATA+GGG + chr1_4:4795313-4795332 None:intergenic 30.0%
!!! ATGTTTTGGTCCACTTTTAT+AGG + chr1_4:4795314-4795333 None:intergenic 30.0%
GTAAATGAAAAAGTTGCATC+TGG + chr1_4:4795438-4795457 None:intergenic 30.0%
TACAGATGAAGACTTTGTTA+AGG - chr1_4:4795455-4795474 Msa0145150:intron 30.0%
ACTTTGTTAAGGTTGCATTA+GGG - chr1_4:4795466-4795485 Msa0145150:intron 30.0%
!!! TGTTCTCTTTTTTTCCGTTT+TGG - chr1_4:4795543-4795562 Msa0145150:intron 30.0%
AATAGATACAAGGAAGTGAA+TGG + chr1_4:4795584-4795603 None:intergenic 30.0%
TAACTATAGATATACTCCTC+AGG + chr1_4:4795759-4795778 None:intergenic 30.0%
GGTTCATGAGAATATAGTTA+TGG - chr1_4:4795814-4795833 Msa0145150:CDS 30.0%
TGCATCAATCCAAGTATTAA+TGG + chr1_4:4795975-4795994 None:intergenic 30.0%
!!! TTTGGTTTTTGGTGGTTGAA+TGG + chr1_4:4794233-4794252 None:intergenic 35.0%
TCAGTTTCAAATTGCTCCTA+AGG - chr1_4:4794418-4794437 Msa0145150:three_prime_UTR 35.0%
TATACCGTTGATCTCAAGAA+AGG - chr1_4:4794555-4794574 Msa0145150:CDS 35.0%
TTCTCCTTTCTTGAGATCAA+CGG + chr1_4:4794562-4794581 None:intergenic 35.0%
AAGAAAGGAGAAGTTACCAA+AGG - chr1_4:4794570-4794589 Msa0145150:CDS 35.0%
TTAGCTGCAATTTAGACCTA+TGG - chr1_4:4794866-4794885 Msa0145150:intron 35.0%
GAATCTGGATGTAATTAGGT+TGG - chr1_4:4794906-4794925 Msa0145150:intron 35.0%
!! AGATCGAAAGCATCTAATCA+CGG + chr1_4:4795088-4795107 None:intergenic 35.0%
!! GTTTTGGTCCACTTTTATAG+GGG + chr1_4:4795312-4795331 None:intergenic 35.0%
GACTTTGTTAAGGTTGCATT+AGG - chr1_4:4795465-4795484 Msa0145150:intron 35.0%
TCACTTCCTTGTATCTATTG+TGG - chr1_4:4795585-4795604 Msa0145150:intron 35.0%
ATACATAACCTCAAAACCTG+AGG - chr1_4:4795740-4795759 Msa0145150:intron 35.0%
ACGTTAGATCATCATTCCTA+AGG - chr1_4:4795782-4795801 Msa0145150:intron 35.0%
ATCATTCCTAAGGTTGTAGA+GGG - chr1_4:4795792-4795811 Msa0145150:intron 35.0%
AAGTCTATACTTGTGAATGC+TGG - chr1_4:4796012-4796031 Msa0145150:five_prime_UTR 35.0%
AGTCTATACTTGTGAATGCT+GGG - chr1_4:4796013-4796032 Msa0145150:five_prime_UTR 35.0%
TTTAGGCAAAGATAGTGAGA+TGG + chr1_4:4796044-4796063 None:intergenic 35.0%
!!! TTTGGTTTTTGGTGGTTGAA+TGG + chr1_4:4794233-4794252 None:intergenic 35.0%
TCAGTTTCAAATTGCTCCTA+AGG - chr1_4:4794418-4794437 Msa0145150:three_prime_UTR 35.0%
TATACCGTTGATCTCAAGAA+AGG - chr1_4:4794555-4794574 Msa0145150:CDS 35.0%
TTCTCCTTTCTTGAGATCAA+CGG + chr1_4:4794562-4794581 None:intergenic 35.0%
AAGAAAGGAGAAGTTACCAA+AGG - chr1_4:4794570-4794589 Msa0145150:CDS 35.0%
TTAGCTGCAATTTAGACCTA+TGG - chr1_4:4794866-4794885 Msa0145150:intron 35.0%
GAATCTGGATGTAATTAGGT+TGG - chr1_4:4794906-4794925 Msa0145150:intron 35.0%
!! AGATCGAAAGCATCTAATCA+CGG + chr1_4:4795088-4795107 None:intergenic 35.0%
!! GTTTTGGTCCACTTTTATAG+GGG + chr1_4:4795312-4795331 None:intergenic 35.0%
GACTTTGTTAAGGTTGCATT+AGG - chr1_4:4795465-4795484 Msa0145150:intron 35.0%
TCACTTCCTTGTATCTATTG+TGG - chr1_4:4795585-4795604 Msa0145150:intron 35.0%
ATACATAACCTCAAAACCTG+AGG - chr1_4:4795740-4795759 Msa0145150:intron 35.0%
ACGTTAGATCATCATTCCTA+AGG - chr1_4:4795782-4795801 Msa0145150:intron 35.0%
ATCATTCCTAAGGTTGTAGA+GGG - chr1_4:4795792-4795811 Msa0145150:intron 35.0%
AAGTCTATACTTGTGAATGC+TGG - chr1_4:4796012-4796031 Msa0145150:five_prime_UTR 35.0%
AGTCTATACTTGTGAATGCT+GGG - chr1_4:4796013-4796032 Msa0145150:five_prime_UTR 35.0%
TTTAGGCAAAGATAGTGAGA+TGG + chr1_4:4796044-4796063 None:intergenic 35.0%
ATTCGATGATGAATCAGCCA+TGG + chr1_4:4794309-4794328 None:intergenic 40.0%
GCGTGAATCTGGATGTAATT+AGG - chr1_4:4794902-4794921 Msa0145150:intron 40.0%
!! GGTTGGTAAAGATAGGGATT+TGG - chr1_4:4794923-4794942 Msa0145150:intron 40.0%
CTGGACAGTCCAATCTTAAT+CGG - chr1_4:4795010-4795029 Msa0145150:intron 40.0%
TCCAATCTTAATCGGATGTG+AGG - chr1_4:4795018-4795037 Msa0145150:intron 40.0%
ACCTCACATCCGATTAAGAT+TGG + chr1_4:4795022-4795041 None:intergenic 40.0%
AATCTTAATCGGATGTGAGG+TGG - chr1_4:4795021-4795040 Msa0145150:intron 40.0%
GCATCTAATCACGGAAGATA+TGG + chr1_4:4795079-4795098 None:intergenic 40.0%
TAGATTGTTGTCTAGGTAGC+TGG - chr1_4:4795118-4795137 Msa0145150:intron 40.0%
ACCAAAACATGCCATCAACT+TGG - chr1_4:4795324-4795343 Msa0145150:intron 40.0%
!!! ACCAAGTTGATGGCATGTTT+TGG + chr1_4:4795328-4795347 None:intergenic 40.0%
TACATTAAGGACGGCATTGT+AGG + chr1_4:4795372-4795391 None:intergenic 40.0%
! GTGTATATAGGGGCATATGA+AGG - chr1_4:4795405-4795424 Msa0145150:intron 40.0%
! TATATAGGGGCATATGAAGG+TGG - chr1_4:4795408-4795427 Msa0145150:intron 40.0%
! ATATAGGGGCATATGAAGGT+GGG - chr1_4:4795409-4795428 Msa0145150:intron 40.0%
ATCCACAGATTGCTTTCATG+AGG - chr1_4:4795496-4795515 Msa0145150:intron 40.0%
AACCTCATGAAAGCAATCTG+TGG + chr1_4:4795501-4795520 None:intergenic 40.0%
CTTCCTTGTATCTATTGTGG+TGG - chr1_4:4795588-4795607 Msa0145150:intron 40.0%
ACACCACCACAATAGATACA+AGG + chr1_4:4795594-4795613 None:intergenic 40.0%
! TTGTGGTGGTGTATGAATAC+AGG - chr1_4:4795602-4795621 Msa0145150:intron 40.0%
! TGTGGTGGTGTATGAATACA+GGG - chr1_4:4795603-4795622 Msa0145150:intron 40.0%
! AGGGGTGCAATGAAGATTAA+GGG - chr1_4:4795622-4795641 Msa0145150:intron 40.0%
TGCTGCTCAGAAATTTACTC+CGG - chr1_4:4795654-4795673 Msa0145150:CDS 40.0%
! GATATACTCCTCAGGTTTTG+AGG + chr1_4:4795751-4795770 None:intergenic 40.0%
CATCATTCCTAAGGTTGTAG+AGG - chr1_4:4795791-4795810 Msa0145150:intron 40.0%
TCATTCCTAAGGTTGTAGAG+GGG - chr1_4:4795793-4795812 Msa0145150:intron 40.0%
ATTCGATGATGAATCAGCCA+TGG + chr1_4:4794309-4794328 None:intergenic 40.0%
GCGTGAATCTGGATGTAATT+AGG - chr1_4:4794902-4794921 Msa0145150:intron 40.0%
!! GGTTGGTAAAGATAGGGATT+TGG - chr1_4:4794923-4794942 Msa0145150:intron 40.0%
CTGGACAGTCCAATCTTAAT+CGG - chr1_4:4795010-4795029 Msa0145150:intron 40.0%
TCCAATCTTAATCGGATGTG+AGG - chr1_4:4795018-4795037 Msa0145150:intron 40.0%
ACCTCACATCCGATTAAGAT+TGG + chr1_4:4795022-4795041 None:intergenic 40.0%
AATCTTAATCGGATGTGAGG+TGG - chr1_4:4795021-4795040 Msa0145150:intron 40.0%
GCATCTAATCACGGAAGATA+TGG + chr1_4:4795079-4795098 None:intergenic 40.0%
TAGATTGTTGTCTAGGTAGC+TGG - chr1_4:4795118-4795137 Msa0145150:intron 40.0%
ACCAAAACATGCCATCAACT+TGG - chr1_4:4795324-4795343 Msa0145150:intron 40.0%
!!! ACCAAGTTGATGGCATGTTT+TGG + chr1_4:4795328-4795347 None:intergenic 40.0%
TACATTAAGGACGGCATTGT+AGG + chr1_4:4795372-4795391 None:intergenic 40.0%
! GTGTATATAGGGGCATATGA+AGG - chr1_4:4795405-4795424 Msa0145150:intron 40.0%
! TATATAGGGGCATATGAAGG+TGG - chr1_4:4795408-4795427 Msa0145150:intron 40.0%
! ATATAGGGGCATATGAAGGT+GGG - chr1_4:4795409-4795428 Msa0145150:intron 40.0%
ATCCACAGATTGCTTTCATG+AGG - chr1_4:4795496-4795515 Msa0145150:intron 40.0%
AACCTCATGAAAGCAATCTG+TGG + chr1_4:4795501-4795520 None:intergenic 40.0%
CTTCCTTGTATCTATTGTGG+TGG - chr1_4:4795588-4795607 Msa0145150:intron 40.0%
ACACCACCACAATAGATACA+AGG + chr1_4:4795594-4795613 None:intergenic 40.0%
! TTGTGGTGGTGTATGAATAC+AGG - chr1_4:4795602-4795621 Msa0145150:intron 40.0%
! TGTGGTGGTGTATGAATACA+GGG - chr1_4:4795603-4795622 Msa0145150:intron 40.0%
! AGGGGTGCAATGAAGATTAA+GGG - chr1_4:4795622-4795641 Msa0145150:intron 40.0%
TGCTGCTCAGAAATTTACTC+CGG - chr1_4:4795654-4795673 Msa0145150:CDS 40.0%
! GATATACTCCTCAGGTTTTG+AGG + chr1_4:4795751-4795770 None:intergenic 40.0%
CATCATTCCTAAGGTTGTAG+AGG - chr1_4:4795791-4795810 Msa0145150:intron 40.0%
TCATTCCTAAGGTTGTAGAG+GGG - chr1_4:4795793-4795812 Msa0145150:intron 40.0%
ATGAATCAGCCATGGTGGTT+TGG + chr1_4:4794301-4794320 None:intergenic 45.0%
CGGAAGATATGGAAATCACC+AGG + chr1_4:4795068-4795087 None:intergenic 45.0%
! GGGACAAAATTGATTCTGCG+TGG + chr1_4:4795292-4795311 None:intergenic 45.0%
! GTGGTGGTGTATGAATACAG+GGG - chr1_4:4795604-4795623 Msa0145150:intron 45.0%
! CAGGGGTGCAATGAAGATTA+AGG - chr1_4:4795621-4795640 Msa0145150:intron 45.0%
!! GAAGGCTTTGGGAAGATATC+CGG + chr1_4:4795676-4795695 None:intergenic 45.0%
CTCACATCTTGGAAGGCTTT+GGG + chr1_4:4795687-4795706 None:intergenic 45.0%
ATCTCTGCTCACATCTTGGA+AGG + chr1_4:4795694-4795713 None:intergenic 45.0%
AGACATCTCTGCTCACATCT+TGG + chr1_4:4795698-4795717 None:intergenic 45.0%
ATGAACCCCTCTACAACCTT+AGG + chr1_4:4795801-4795820 None:intergenic 45.0%
ATGAATCAGCCATGGTGGTT+TGG + chr1_4:4794301-4794320 None:intergenic 45.0%
CGGAAGATATGGAAATCACC+AGG + chr1_4:4795068-4795087 None:intergenic 45.0%
! GGGACAAAATTGATTCTGCG+TGG + chr1_4:4795292-4795311 None:intergenic 45.0%
! GTGGTGGTGTATGAATACAG+GGG - chr1_4:4795604-4795623 Msa0145150:intron 45.0%
! CAGGGGTGCAATGAAGATTA+AGG - chr1_4:4795621-4795640 Msa0145150:intron 45.0%
!! GAAGGCTTTGGGAAGATATC+CGG + chr1_4:4795676-4795695 None:intergenic 45.0%
CTCACATCTTGGAAGGCTTT+GGG + chr1_4:4795687-4795706 None:intergenic 45.0%
ATCTCTGCTCACATCTTGGA+AGG + chr1_4:4795694-4795713 None:intergenic 45.0%
AGACATCTCTGCTCACATCT+TGG + chr1_4:4795698-4795717 None:intergenic 45.0%
ATGAACCCCTCTACAACCTT+AGG + chr1_4:4795801-4795820 None:intergenic 45.0%
!!! ATTTTAAATAAATCAAAATA+TGG + chr1_4:4794970-4794989 None:intergenic 5.0%
!!! ATTTTAAATAAATCAAAATA+TGG + chr1_4:4794970-4794989 None:intergenic 5.0%
ACGCAACAACCAAACCACCA+TGG - chr1_4:4794289-4794308 Msa0145150:three_prime_UTR 50.0%
CGATGATGAATCAGCCATGG+TGG + chr1_4:4794306-4794325 None:intergenic 50.0%
!!! GGTGAGTTTTTTGCCAGCGT+CGG + chr1_4:4794378-4794397 None:intergenic 50.0%
CGCACACATTGCTCATCCAT+AGG + chr1_4:4794885-4794904 None:intergenic 50.0%
GAGCAATGTGTGCGTGAATC+TGG - chr1_4:4794891-4794910 Msa0145150:intron 50.0%
GCTCACATCTTGGAAGGCTT+TGG + chr1_4:4795688-4795707 None:intergenic 50.0%
ACGCAACAACCAAACCACCA+TGG - chr1_4:4794289-4794308 Msa0145150:three_prime_UTR 50.0%
CGATGATGAATCAGCCATGG+TGG + chr1_4:4794306-4794325 None:intergenic 50.0%
!!! GGTGAGTTTTTTGCCAGCGT+CGG + chr1_4:4794378-4794397 None:intergenic 50.0%
CGCACACATTGCTCATCCAT+AGG + chr1_4:4794885-4794904 None:intergenic 50.0%
GAGCAATGTGTGCGTGAATC+TGG - chr1_4:4794891-4794910 Msa0145150:intron 50.0%
GCTCACATCTTGGAAGGCTT+TGG + chr1_4:4795688-4795707 None:intergenic 50.0%
! CAACACTTTTCCACCGACGC+TGG - chr1_4:4794362-4794381 Msa0145150:three_prime_UTR 55.0%
!!! GAGTTTTTTGCCAGCGTCGG+TGG + chr1_4:4794375-4794394 None:intergenic 55.0%
ACCAGGTGACTGCACACAGT+CGG + chr1_4:4795051-4795070 None:intergenic 55.0%
! CAACACTTTTCCACCGACGC+TGG - chr1_4:4794362-4794381 Msa0145150:three_prime_UTR 55.0%
!!! GAGTTTTTTGCCAGCGTCGG+TGG + chr1_4:4794375-4794394 None:intergenic 55.0%
ACCAGGTGACTGCACACAGT+CGG + chr1_4:4795051-4795070 None:intergenic 55.0%
TCCGACTGTGTGCAGTCACC+TGG - chr1_4:4795047-4795066 Msa0145150:intron 60.0%
TCCGACTGTGTGCAGTCACC+TGG - chr1_4:4795047-4795066 Msa0145150:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 4794176 4796064 4794176 ID=Msa0145150;Name=Msa0145150
chr1_4 mRNA 4794176 4796064 4794176 ID=Msa0145150-mRNA-1;Parent=Msa0145150;Name=Msa0145150-mRNA-1;_AED=0.04;_eAED=0.04;_QI=132|1|1|1|1|1|4|359|125
chr1_4 exon 4794176 4794616 4794176 ID=Msa0145150-mRNA-1:exon:2038;Parent=Msa0145150-mRNA-1
chr1_4 exon 4794723 4794825 4794723 ID=Msa0145150-mRNA-1:exon:2037;Parent=Msa0145150-mRNA-1
chr1_4 exon 4795649 4795709 4795649 ID=Msa0145150-mRNA-1:exon:2036;Parent=Msa0145150-mRNA-1
chr1_4 exon 4795801 4796064 4795801 ID=Msa0145150-mRNA-1:exon:2035;Parent=Msa0145150-mRNA-1
chr1_4 five_prime_UTR 4795933 4796064 4795933 ID=Msa0145150-mRNA-1:five_prime_utr;Parent=Msa0145150-mRNA-1
chr1_4 CDS 4795801 4795932 4795801 ID=Msa0145150-mRNA-1:cds;Parent=Msa0145150-mRNA-1
chr1_4 CDS 4795649 4795709 4795649 ID=Msa0145150-mRNA-1:cds;Parent=Msa0145150-mRNA-1
chr1_4 CDS 4794723 4794825 4794723 ID=Msa0145150-mRNA-1:cds;Parent=Msa0145150-mRNA-1
chr1_4 CDS 4794535 4794616 4794535 ID=Msa0145150-mRNA-1:cds;Parent=Msa0145150-mRNA-1
chr1_4 three_prime_UTR 4794176 4794534 4794176 ID=Msa0145150-mRNA-1:three_prime_utr;Parent=Msa0145150-mRNA-1
Gene Sequence

>Msa0145150

ATGGCTGATTCATCATCGAATCTGAAATCAGAAGCGATAATCGACTTAATGAAACAACACTTTTCCACCGACGCTGGCAAAAAACTCACCGAAAAAATTGGTCTCGTTTATCAGTTTCAAATTGCTCCTAAGAAAATTGGAATCAATGAAGTTACATATACCGTTGATCTCAAGAAAGGAGAAGTTACCAAAGGGGCATATGAAGGTGGGAAGCCAGATGCAACTTTTTCATTTACAGATGAAGACTTTGTTAAGGTTGCATTAGGGAAGATGAATCCACAGATTGCTTTCATGAGGGGTGCAATGAAGATTAAGGGAAGTTTGAGTGCTGCTCAGAAATTTACTCCGGATATCTTCCCAAAGCCTTCCAAGATGTGA

Protein sequence

>Msa0145150

MADSSSNLKSEAIIDLMKQHFSTDAGKKLTEKIGLVYQFQIAPKKIGINEVTYTVDLKKGEVTKGAYEGGKPDATFSFTDEDFVKVALGKMNPQIAFMRGAMKIKGSLSAAQKFTPDIFPKPSKM*