AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0072170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0072170 MtrunA17_Chr1g0179021 97.926 434 9 0 1 434 1 434 0.0 863
Msa0072170 MtrunA17_Chr7g0228211 55.374 428 186 3 4 431 3 425 1.27e-172 492
Msa0072170 MtrunA17_Chr8g0387461 46.028 428 206 8 2 417 56 470 1.52e-118 355
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0072170 AT3G52880.1 78.291 433 94 0 1 433 1 433 0.0 688
Msa0072170 AT3G52880.2 72.747 466 95 1 1 434 1 466 0.0 672
Msa0072170 AT5G03630.1 74.651 430 109 0 3 432 4 433 0.0 650
Msa0072170 AT3G09940.1 65.820 433 147 1 3 434 4 436 0.0 570
Msa0072170 AT3G09940.2 65.127 433 142 2 3 434 4 428 0.0 558
Msa0072170 AT3G27820.1 55.012 429 186 4 4 431 3 425 1.14e-158 457
Msa0072170 AT1G63940.2 45.902 427 208 7 1 417 56 469 7.89e-123 366
Msa0072170 AT1G63940.1 45.902 427 208 7 1 417 49 462 8.14e-123 365
Msa0072170 AT1G63940.4 44.965 427 208 7 1 417 49 458 1.77e-118 354
Msa0072170 AT1G63940.3 47.312 372 178 6 1 362 49 412 1.30e-108 327

Find 139 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTACTCTAGGTTATATCTT+AGG 0.133269 1_2:-44841855 Msa0072170:three_prime_UTR
GCATCATCAAAGCCTAATTT+TGG 0.178444 1_2:-44842101 Msa0072170:CDS
CCATTCATTATATTGGATTT+TGG 0.179071 1_2:+44845683 None:intergenic
GCAGCTCCTGCTAGACTTCC+TGG 0.182558 1_2:-44843866 Msa0072170:intron
GCCAGATCCATTCATTATAT+TGG 0.194419 1_2:+44845676 None:intergenic
CTTTGAATGGCAAATTTATA+TGG 0.200375 1_2:-44845802 Msa0072170:five_prime_UTR
ATCCAGTATGTTCCAAAATT+AGG 0.241603 1_2:+44842089 None:intergenic
CCTTTCTCATTGTACCATTC+TGG 0.242015 1_2:+44843803 None:intergenic
AAAATATCTTTAAAATTTAC+TGG 0.242138 1_2:+44841932 None:intergenic
GAAGTTATATACCGCTTCTT+TGG 0.253487 1_2:+44844957 None:intergenic
CACTTACTGCACCAAGGTTC+TGG 0.254429 1_2:+44843187 None:intergenic
TGAGGGATATTATGCAAATA+AGG 0.254901 1_2:-44843035 Msa0072170:CDS
ATTAAAGACGGGAAAGTTAT+TGG 0.257644 1_2:-44842068 Msa0072170:CDS
CAAACTTACACTCCGGAAAA+AGG 0.272710 1_2:+44844151 None:intergenic
GTTGGTGACACAGTGCTATT+TGG 0.278134 1_2:-44842137 Msa0072170:CDS
AATGAAACTGGATTAGTTAT+AGG 0.307486 1_2:+44845654 None:intergenic
TCCTGCCTCTGCTGCAATGA+TGG 0.311126 1_2:+44842241 None:intergenic
CTTCAACCTGCCCTTTGAAT+AGG 0.313300 1_2:+44842780 None:intergenic
TTACTCTAGGTTATATCTTA+GGG 0.319322 1_2:-44841854 Msa0072170:three_prime_UTR
ATGGGAAAGCTGTGGTTGTT+GGG 0.325418 1_2:-44843279 Msa0072170:CDS
TTCAACCTGCCCTTTGAATA+GGG 0.331938 1_2:+44842781 None:intergenic
AGCAAGGGAGTTTGTGAAAC+AGG 0.334221 1_2:-44845010 Msa0072170:CDS
AAATGAAATGAAAATGAAAC+TGG 0.335066 1_2:+44845642 None:intergenic
GTTATAAGGTTGACCGATTT+CGG 0.348452 1_2:-44843391 Msa0072170:CDS
AGGAGTTCCGCCCTCCAAAA+AGG 0.369207 1_2:+44842043 None:intergenic
GCAATAGCTTTGTTCTCATC+AGG 0.370142 1_2:+44842023 None:intergenic
TACCTCTCCATCGGAATTAG+AGG 0.382642 1_2:+44842973 None:intergenic
TGCACAGAATATATCTGTAT+TGG 0.382908 1_2:-44841884 Msa0072170:three_prime_UTR
GAGGGATATTATGCAAATAA+GGG 0.399575 1_2:-44843034 Msa0072170:CDS
CCCGCTCATTTGATCTGTCT+TGG 0.402893 1_2:-44842178 Msa0072170:CDS
AATGGGAAAGCTGTGGTTGT+TGG 0.405868 1_2:-44843280 Msa0072170:CDS
AGCTCCTTCTACACCGAAAT+CGG 0.406909 1_2:+44843378 None:intergenic
GATTGCCTCGTACAATTTGT+CGG 0.408450 1_2:+44843315 None:intergenic
TTCCATACCTGTGTTGGAAG+TGG 0.409257 1_2:-44843842 Msa0072170:CDS
GGGAGTTAAGCCTGGGGAGC+TGG 0.410028 1_2:-44844989 Msa0072170:CDS
TTGACCGATTTCGGTGTAGA+AGG 0.410797 1_2:-44843382 Msa0072170:CDS
TTGTGAAGGACAAATTGCTT+GGG 0.412454 1_2:-44841910 Msa0072170:three_prime_UTR
AATGAGCGGGAATAGAAGTA+TGG 0.414692 1_2:+44842191 None:intergenic
CAGCTCCTGCTAGACTTCCT+GGG 0.431228 1_2:-44843865 Msa0072170:CDS
TCCATACCTGTGTTGGAAGT+GGG 0.433327 1_2:-44843841 Msa0072170:CDS
AACATTCAAATACCAGACTT+TGG 0.436365 1_2:-44843529 Msa0072170:CDS
GATATGATTGCCAGCTCCCC+AGG 0.439711 1_2:+44844979 None:intergenic
CCAAAATCCAATATAATGAA+TGG 0.440443 1_2:-44845683 Msa0072170:five_prime_UTR
CTTAGAGCAGGACGTTCATA+AGG 0.442351 1_2:+44844183 None:intergenic
TCCAATATAATGAATGGATC+TGG 0.446076 1_2:-44845677 Msa0072170:five_prime_UTR
TGCTCGCAAATCAGCTGAGC+AGG 0.448272 1_2:-44842519 Msa0072170:CDS
AAATTAGGCTTTGATGATGC+AGG 0.450521 1_2:+44842104 None:intergenic
CAGACTTTGGTTATTGCAAC+GGG 0.454674 1_2:-44843516 Msa0072170:CDS
TTTGTGAAGGACAAATTGCT+TGG 0.456000 1_2:-44841911 Msa0072170:three_prime_UTR
GTGAAACAGGGAGTTAAGCC+TGG 0.456583 1_2:-44844997 Msa0072170:CDS
ACTAAAGGACGGAAGGGTAC+TGG 0.464010 1_2:-44842849 Msa0072170:CDS
GATATCGTTGTTGTTGGTGT+TGG 0.464393 1_2:-44842821 Msa0072170:CDS
CTCAAATATCCCTATTCAAA+GGG 0.465069 1_2:-44842790 Msa0072170:CDS
ATTAAAGGAACTGTTGCTAC+TGG 0.465914 1_2:-44843001 Msa0072170:CDS
ACAGTTTGTGTGAAAGGAAT+CGG 0.470692 1_2:+44845727 None:intergenic
AGAGGAGAAGGGTGGAATCA+AGG 0.470693 1_2:-44842759 Msa0072170:intron
ACTTACTGCACCAAGGTTCT+GGG 0.472875 1_2:+44843188 None:intergenic
ACCTCATTGTACAATTTCAA+AGG 0.474444 1_2:+44842566 None:intergenic
GCAATCAAAGGAAAGAAGAA+TGG 0.475038 1_2:-44843298 Msa0072170:CDS
ATCGTTGTTGTTGGTGTTGG+AGG 0.475278 1_2:-44842818 Msa0072170:CDS
TGGGAAAGCTGTGGTTGTTG+GGG 0.478224 1_2:-44843278 Msa0072170:CDS
AAATCTCTGACTAGTGCAAA+AGG 0.484247 1_2:-44843555 Msa0072170:CDS
GATCTGTCTTGGCAATTCTA+CGG 0.487729 1_2:-44842167 Msa0072170:CDS
CAATCAAAGGAAAGAAGAAT+GGG 0.494313 1_2:-44843297 Msa0072170:CDS
CCTCATTGTACAATTTCAAA+GGG 0.496085 1_2:+44842567 None:intergenic
ATGTATACAGTTTGTGTGAA+AGG 0.496466 1_2:+44845721 None:intergenic
ATCAGCTGAGCAGGCTGCGA+AGG 0.503643 1_2:-44842510 Msa0072170:intron
CCCCACTTCCAACACAGGTA+TGG 0.504218 1_2:+44843840 None:intergenic
CCTGGGTTCCATACCTGTGT+TGG 0.504798 1_2:-44843848 Msa0072170:CDS
CCTCAAATATCCCTATTCAA+AGG 0.504920 1_2:-44842791 Msa0072170:CDS
GCCATCATTGCAGCAGAGGC+AGG 0.506274 1_2:-44842242 Msa0072170:CDS
TGATTCACATCCTTCACTGC+AGG 0.508882 1_2:+44841981 None:intergenic
AGGGCAGGTTGAAGAGGAGA+AGG 0.510981 1_2:-44842771 Msa0072170:CDS
CCGTTGCAATAACCAAAGTC+TGG 0.512143 1_2:+44843517 None:intergenic
CAGGTTGAAGAGGAGAAGGG+TGG 0.514261 1_2:-44842767 Msa0072170:CDS
TTCAAGTACATCATCGTTGG+TGG 0.514305 1_2:-44845525 Msa0072170:CDS
CCCTTTGAAATTGTACAATG+AGG 0.515845 1_2:-44842567 Msa0072170:CDS
TGAAATAGCTGCGTTCTATG+AGG 0.518052 1_2:-44843053 Msa0072170:CDS
CCTTTGAATAGGGATATTTG+AGG 0.518462 1_2:+44842791 None:intergenic
GAAAGTGGTGGAAGCAATAA+CGG 0.518723 1_2:-44845780 Msa0072170:five_prime_UTR
CCAGACTTTGGTTATTGCAA+CGG 0.522695 1_2:-44843517 Msa0072170:CDS
AAGTACATCATCGTTGGTGG+TGG 0.527872 1_2:-44845522 Msa0072170:CDS
CCATACCTGTGTTGGAAGTG+GGG 0.529148 1_2:-44843840 Msa0072170:CDS
AATATCCCTATTCAAAGGGC+AGG 0.530083 1_2:-44842786 Msa0072170:CDS
GAAGCAGATATCGTTGTTGT+TGG 0.531051 1_2:-44842827 Msa0072170:CDS
TGAAACAGGGAGTTAAGCCT+GGG 0.531517 1_2:-44844996 Msa0072170:CDS
AGGTAAGCCTTGCTTAGAGC+AGG 0.532956 1_2:+44844171 None:intergenic
GGAACATACTGGATTAAAGA+CGG 0.545200 1_2:-44842080 Msa0072170:CDS
GGTAAAAGAAGTCAAACTAA+AGG 0.545234 1_2:-44842864 Msa0072170:CDS
TGGAACCCAGGAAGTCTAGC+AGG 0.547573 1_2:+44843860 None:intergenic
GAACATACTGGATTAAAGAC+GGG 0.548378 1_2:-44842079 Msa0072170:CDS
CCAGAATGGTACAATGAGAA+AGG 0.552633 1_2:-44843803 Msa0072170:intron
AAGTCAAACTAAAGGACGGA+AGG 0.553804 1_2:-44842856 Msa0072170:CDS
GAAATAGCTGCGTTCTATGA+GGG 0.560533 1_2:-44843052 Msa0072170:CDS
ACTCTAGGTTATATCTTAGG+GGG 0.561382 1_2:-44841852 Msa0072170:three_prime_UTR
GCCAAGACAGATCAAATGAG+CGG 0.563154 1_2:+44842177 None:intergenic
TGGCAAATTTATATGGAAAG+TGG 0.564239 1_2:-44845795 Msa0072170:five_prime_UTR
AAGAGCATTGCCTGCAGTGA+AGG 0.564265 1_2:-44841991 Msa0072170:CDS
GTTTCCAATGTATATGCTGT+TGG 0.565674 1_2:-44842605 Msa0072170:CDS
TCATTCAAGTACATCATCGT+TGG 0.568162 1_2:-44845528 Msa0072170:CDS
CCAAGACAGATCAAATGAGC+GGG 0.570191 1_2:+44842178 None:intergenic
GTGAATCAACTTGCAAAGGA+AGG 0.570354 1_2:-44841966 Msa0072170:CDS
GGATGTGAATCAACTTGCAA+AGG 0.570956 1_2:-44841970 Msa0072170:CDS
TACTCTAGGTTATATCTTAG+GGG 0.574114 1_2:-44841853 Msa0072170:three_prime_UTR
ATTCAAAGGGCAGGTTGAAG+AGG 0.578439 1_2:-44842777 Msa0072170:CDS
GAGAAAGATTGCTTCCAGAA+TGG 0.579572 1_2:-44843817 Msa0072170:CDS
CAAATTTATATGGAAAGTGG+TGG 0.582410 1_2:-44845792 Msa0072170:five_prime_UTR
GCAGGCCATCATTGCAGCAG+AGG 0.583036 1_2:-44842246 Msa0072170:intron
AAATTGTACGAGGCAATCAA+AGG 0.584541 1_2:-44843310 Msa0072170:CDS
GGATTCACCTCTAATTCCGA+TGG 0.584598 1_2:-44842980 Msa0072170:CDS
GGGAAAGCTGTGGTTGTTGG+GGG 0.584691 1_2:-44843277 Msa0072170:CDS
AATTGTAGGGTTATGCAGCA+AGG 0.585751 1_2:-44845026 Msa0072170:intron
TGTGAAGGACAAATTGCTTG+GGG 0.586583 1_2:-44841909 Msa0072170:three_prime_UTR
CAATTCTACGGCGACAACGT+TGG 0.592292 1_2:-44842155 Msa0072170:CDS
CTCTAGGTTATATCTTAGGG+GGG 0.592922 1_2:-44841851 Msa0072170:three_prime_UTR
AGGGATATTATGCAAATAAG+GGG 0.599658 1_2:-44843033 Msa0072170:CDS
ATTGTAGGGTTATGCAGCAA+GGG 0.600524 1_2:-44845025 Msa0072170:intron
ATGCGGCCATACCTCTCCAT+CGG 0.604691 1_2:+44842964 None:intergenic
CACCTCTAATTCCGATGGAG+AGG 0.604818 1_2:-44842975 Msa0072170:intron
ATCGCCAACAGCATATACAT+TGG 0.608592 1_2:+44842601 None:intergenic
CAATAATATTGATGTTACCA+TGG 0.614036 1_2:-44843215 Msa0072170:CDS
CATACCTGTGTTGGAAGTGG+GGG 0.614897 1_2:-44843839 Msa0072170:CDS
CCATGGTCTACCCAGAACCT+TGG 0.617370 1_2:-44843198 Msa0072170:CDS
GGGCAGGTTGAAGAGGAGAA+GGG 0.619159 1_2:-44842770 Msa0072170:CDS
GGCAATCATATCCAAAGAAG+CGG 0.620227 1_2:-44844968 Msa0072170:intron
GCAAGGGAGTTTGTGAAACA+GGG 0.620845 1_2:-44845009 Msa0072170:CDS
CCAACACAGGTATGGAACCC+AGG 0.626347 1_2:+44843848 None:intergenic
CCAAGGTTCTGGGTAGACCA+TGG 0.634221 1_2:+44843198 None:intergenic
AAAGAAGTCAAACTAAAGGA+CGG 0.634551 1_2:-44842860 Msa0072170:CDS
TGAACGTCCTGCTCTAAGCA+AGG 0.638367 1_2:-44844178 Msa0072170:CDS
AGTCAAACTAAAGGACGGAA+GGG 0.640917 1_2:-44842855 Msa0072170:CDS
AAAGAAGAATGGGAAAGCTG+TGG 0.672130 1_2:-44843287 Msa0072170:CDS
ATCTCTCGCGAACATCACAA+AGG 0.685843 1_2:+44841425 None:intergenic
TGAAAGGAATCGGACTGACG+TGG 0.705306 1_2:+44845737 None:intergenic
GGGATATTATGCAAATAAGG+GGG 0.714196 1_2:-44843032 Msa0072170:CDS
AATGTCCACTTACTGCACCA+AGG 0.718065 1_2:+44843181 None:intergenic
TGATGCCGACAAATTGTACG+AGG 0.731621 1_2:-44843320 Msa0072170:CDS
CTGACGTGGCAATTTAACAG+TGG 0.736669 1_2:+44845751 None:intergenic
GAAACAGGGAGTTAAGCCTG+GGG 0.761504 1_2:-44844995 Msa0072170:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCATTTAATTCTTATATT+TGG - chr1_2:44842268-44842287 Msa0072170:intron 10.0%
!!! ATAAAATTTTAAACTTCATA+TGG + chr1_2:44842365-44842384 None:intergenic 10.0%
!! ACAGAATTAAAATAAAATAA+GGG + chr1_2:44843417-44843436 None:intergenic 10.0%
!!! CAAAAATATATTTTATTTGA+GGG - chr1_2:44843825-44843844 Msa0072170:CDS 10.0%
!!! AAAATATCTTTAAAATTTAC+TGG + chr1_2:44845246-44845265 None:intergenic 10.0%
!!! GCATATCAATTAAATTTTTT+TGG - chr1_2:44842101-44842120 Msa0072170:CDS 15.0%
!! ATGAAAAAAAAAAACAAAAG+TGG + chr1_2:44842254-44842273 None:intergenic 15.0%
!!! ATTTGGTTATACTTTTTTAA+TGG - chr1_2:44842285-44842304 Msa0072170:intron 15.0%
!!! TTTTGAATTATATTTAGTGA+AGG - chr1_2:44843175-44843194 Msa0072170:intron 15.0%
!! AGAATTAAAATAAAATAAGG+GGG + chr1_2:44843415-44843434 None:intergenic 15.0%
!! CAGAATTAAAATAAAATAAG+GGG + chr1_2:44843416-44843435 None:intergenic 15.0%
!! CACAGAATTAAAATAAAATA+AGG + chr1_2:44843418-44843437 None:intergenic 15.0%
!!! TTTTAATTCTGTGTTATATT+TGG - chr1_2:44843425-44843444 Msa0072170:intron 15.0%
!! AGATAAGTAAATATAAGAAT+GGG - chr1_2:44843495-44843514 Msa0072170:intron 15.0%
!!! CCTCAAATAAAATATATTTT+TGG + chr1_2:44843827-44843846 None:intergenic 15.0%
!!! CCAAAAATATATTTTATTTG+AGG - chr1_2:44843824-44843843 Msa0072170:CDS 15.0%
!!! TTTTAAAGATATTTTTGTGA+AGG - chr1_2:44845251-44845270 Msa0072170:intron 15.0%
!! AAATGAAATGAAAATGAAAC+TGG + chr1_2:44841536-44841555 None:intergenic 20.0%
!! ATTGAAACAAGAATAAAGAT+TGG + chr1_2:44841705-44841724 None:intergenic 20.0%
!! AAAAAATTCACAAGAATCTA+CGG + chr1_2:44841753-44841772 None:intergenic 20.0%
!! TGTAACAATTCTATGTTAAA+GGG - chr1_2:44841798-44841817 Msa0072170:three_prime_UTR 20.0%
!!! ATCACAATCAATTTTTTTGA+GGG + chr1_2:44842051-44842070 None:intergenic 20.0%
!!! AATCACAATCAATTTTTTTG+AGG + chr1_2:44842052-44842071 None:intergenic 20.0%
!! TCAAAAAAATTGATTGTGAT+TGG - chr1_2:44842051-44842070 Msa0072170:CDS 20.0%
!!! TTTTTTGGATTGAATAATTG+AGG - chr1_2:44842116-44842135 Msa0072170:CDS 20.0%
!! TTTGTGAGTAAATATTCTAT+AGG - chr1_2:44842530-44842549 Msa0072170:CDS 20.0%
!!! GTAAAAATTCGAAATTTTTC+AGG + chr1_2:44842790-44842809 None:intergenic 20.0%
!!! ATGGTTTTCAGAATAAATAT+TGG - chr1_2:44843448-44843467 Msa0072170:intron 20.0%
!!! TGGTTTTCAGAATAAATATT+GGG - chr1_2:44843449-44843468 Msa0072170:intron 20.0%
!! GAGATAAGTAAATATAAGAA+TGG - chr1_2:44843494-44843513 Msa0072170:intron 20.0%
!! GATATTAGAAATGTTACATT+CGG - chr1_2:44843704-44843723 Msa0072170:intron 20.0%
!!! TACTAATAATTTTGTTTTGC+AGG - chr1_2:44843762-44843781 Msa0072170:intron 20.0%
!!! AAATATATTTTATTTGAGGG+AGG - chr1_2:44843828-44843847 Msa0072170:CDS 20.0%
!!! GAGTTTTATTATTTGGTTTT+TGG + chr1_2:44845470-44845489 None:intergenic 20.0%
!! AAAAATTAAACCTCAGTATT+TGG + chr1_2:44845712-44845731 None:intergenic 20.0%
! CTTTGAATGGCAAATTTATA+TGG - chr1_2:44841373-44841392 Msa0072170:three_prime_UTR 25.0%
!! TTCATTATATTGGATTTTGG+AGG + chr1_2:44841492-44841511 None:intergenic 25.0%
!! CCATTCATTATATTGGATTT+TGG + chr1_2:44841495-44841514 None:intergenic 25.0%
! CCAAAATCCAATATAATGAA+TGG - chr1_2:44841492-44841511 Msa0072170:intron 25.0%
!!! AATGAAACTGGATTAGTTAT+AGG + chr1_2:44841524-44841543 None:intergenic 25.0%
! TCACATCAATCAATCAAAAA+TGG - chr1_2:44841616-44841635 Msa0072170:intron 25.0%
! CTGTAACAATTCTATGTTAA+AGG - chr1_2:44841797-44841816 Msa0072170:three_prime_UTR 25.0%
! TATGTTAAAGGGATTAGAAT+CGG - chr1_2:44841809-44841828 Msa0072170:three_prime_UTR 25.0%
!! AATTTTTCACAGTATTCACA+AGG + chr1_2:44841857-44841876 None:intergenic 25.0%
!!! TTTGCTTTGCTTTGAATTTT+AGG - chr1_2:44841897-44841916 Msa0072170:three_prime_UTR 25.0%
!!! AGGTGTTTTTTGAAATTGTA+GGG - chr1_2:44842136-44842155 Msa0072170:CDS 25.0%
!!! TACTTTTTTAATGGTGATAG+TGG - chr1_2:44842294-44842313 Msa0072170:intron 25.0%
!!! ACTTTTTTAATGGTGATAGT+GGG - chr1_2:44842295-44842314 Msa0072170:intron 25.0%
! AGATACATATCATGAAATTC+AGG + chr1_2:44842702-44842721 None:intergenic 25.0%
!!! GGACATATTTTTGCATTTTT+AGG - chr1_2:44842844-44842863 Msa0072170:CDS 25.0%
!! ACGTGGTACAAAATTTTAAA+AGG + chr1_2:44842894-44842913 None:intergenic 25.0%
!! ATTTTGTACCACGTATTTAT+TGG - chr1_2:44842900-44842919 Msa0072170:intron 25.0%
! TAATTAACCCATAACAGAAT+GGG + chr1_2:44843097-44843116 None:intergenic 25.0%
! TTAATTAACCCATAACAGAA+TGG + chr1_2:44843098-44843117 None:intergenic 25.0%
!!! ATGTGCTATTTAAACTTCAA+TGG + chr1_2:44843238-44843257 None:intergenic 25.0%
! ATCCAACTTAATGTTACAAT+TGG - chr1_2:44843280-44843299 Msa0072170:CDS 25.0%
! ATCCAATTGTAACATTAAGT+TGG + chr1_2:44843285-44843304 None:intergenic 25.0%
! AATTCTGTGTTATATTTGGA+TGG - chr1_2:44843429-44843448 Msa0072170:intron 25.0%
! TAACATTTCTAATATCAGCA+AGG + chr1_2:44843700-44843719 None:intergenic 25.0%
!!! ATTTTGTTTTGCAGGTTATA+AGG - chr1_2:44843770-44843789 Msa0072170:intron 25.0%
! CAATAATATTGATGTTACCA+TGG - chr1_2:44843960-44843979 Msa0072170:intron 25.0%
! AAGTTACGCAAAATTTGATT+AGG + chr1_2:44844277-44844296 None:intergenic 25.0%
!! TATCAATGATACATTTGTTG+TGG - chr1_2:44844517-44844536 Msa0072170:intron 25.0%
! ACCAAAATGATTTCAAAACT+GGG + chr1_2:44844778-44844797 None:intergenic 25.0%
! AACCAAAATGATTTCAAAAC+TGG + chr1_2:44844779-44844798 None:intergenic 25.0%
!!! TTTTTTTTTTGCTTTCATGC+AGG - chr1_2:44844911-44844930 Msa0072170:intron 25.0%
! TTTACTCTAGGTTATATCTT+AGG - chr1_2:44845320-44845339 Msa0072170:intron 25.0%
! TTACTCTAGGTTATATCTTA+GGG - chr1_2:44845321-44845340 Msa0072170:intron 25.0%
!!! TTGCAAGGAGTTTTATTATT+TGG + chr1_2:44845477-44845496 None:intergenic 25.0%
! AAATGATATTTGTAGTGAGA+GGG - chr1_2:44845619-44845638 Msa0072170:five_prime_UTR 25.0%
TGGCAAATTTATATGGAAAG+TGG - chr1_2:44841380-44841399 Msa0072170:three_prime_UTR 30.0%
CAAATTTATATGGAAAGTGG+TGG - chr1_2:44841383-44841402 Msa0072170:three_prime_UTR 30.0%
ATGTATACAGTTTGTGTGAA+AGG + chr1_2:44841457-44841476 None:intergenic 30.0%
!! TGGATTTTGGAGGTTATTTT+GGG + chr1_2:44841482-44841501 None:intergenic 30.0%
!! TTGGATTTTGGAGGTTATTT+TGG + chr1_2:44841483-44841502 None:intergenic 30.0%
TCCAATATAATGAATGGATC+TGG - chr1_2:44841498-44841517 Msa0072170:intron 30.0%
CATCAATCAATCAAAAATGG+CGG - chr1_2:44841619-44841638 Msa0072170:intron 30.0%
GTAGAATTATGAAGATCGAT+CGG + chr1_2:44841731-44841750 None:intergenic 30.0%
!! CTATTTTAAAAGTCGTAGCA+AGG + chr1_2:44841966-44841985 None:intergenic 30.0%
!!! GAGGTGTTTTTTGAAATTGT+AGG - chr1_2:44842135-44842154 Msa0072170:CDS 30.0%
!!! CTTTTTTAATGGTGATAGTG+GGG - chr1_2:44842296-44842315 Msa0072170:intron 30.0%
ATGAAATTCAGGAAATAGTG+TGG + chr1_2:44842691-44842710 None:intergenic 30.0%
CAAAAATATGTCCATCACAA+GGG + chr1_2:44842837-44842856 None:intergenic 30.0%
CACAAAGGTAAGATATGTAA+GGG + chr1_2:44842963-44842982 None:intergenic 30.0%
AATTAACCCATAACAGAATG+GGG + chr1_2:44843096-44843115 None:intergenic 30.0%
TAGTGAAGGTTATGTTATCT+TGG - chr1_2:44843189-44843208 Msa0072170:intron 30.0%
AGTGAAGGTTATGTTATCTT+GGG - chr1_2:44843190-44843209 Msa0072170:intron 30.0%
TACAATGAGAAAGGTGAATT+TGG - chr1_2:44843381-44843400 Msa0072170:CDS 30.0%
TAAATTGAACCAATGATTGC+AGG - chr1_2:44843548-44843567 Msa0072170:CDS 30.0%
AAATTGAACCAATGATTGCA+GGG - chr1_2:44843549-44843568 Msa0072170:CDS 30.0%
AACATTCAAATACCAGACTT+TGG - chr1_2:44843646-44843665 Msa0072170:intron 30.0%
AGTAATTAGTATGCGCTAAA+AGG + chr1_2:44843746-44843765 None:intergenic 30.0%
CAATCAAAGGAAAGAAGAAT+GGG - chr1_2:44843878-44843897 Msa0072170:intron 30.0%
ATTTCAGCAGTAAAAAGTCT+TGG + chr1_2:44844108-44844127 None:intergenic 30.0%
TGAGGGATATTATGCAAATA+AGG - chr1_2:44844140-44844159 Msa0072170:intron 30.0%
GAGGGATATTATGCAAATAA+GGG - chr1_2:44844141-44844160 Msa0072170:intron 30.0%
AGGGATATTATGCAAATAAG+GGG - chr1_2:44844142-44844161 Msa0072170:intron 30.0%
GGTAAAAGAAGTCAAACTAA+AGG - chr1_2:44844311-44844330 Msa0072170:intron 30.0%
AAAGAAGTCAAACTAAAGGA+CGG - chr1_2:44844315-44844334 Msa0072170:intron 30.0%
CTCAAATATCCCTATTCAAA+GGG - chr1_2:44844385-44844404 Msa0072170:intron 30.0%
!!! GGAAACATTTGTTTTGAAGA+AGG + chr1_2:44844556-44844575 None:intergenic 30.0%
CCTCATTGTACAATTTCAAA+GGG + chr1_2:44844611-44844630 None:intergenic 30.0%
ACCTCATTGTACAATTTCAA+AGG + chr1_2:44844612-44844631 None:intergenic 30.0%
! TGGAGAAGCATAAATATGTA+GGG + chr1_2:44844701-44844720 None:intergenic 30.0%
! TTGGAGAAGCATAAATATGT+AGG + chr1_2:44844702-44844721 None:intergenic 30.0%
! ACATGTGTTTTGTGCATAAT+TGG + chr1_2:44844721-44844740 None:intergenic 30.0%
! AAACACATGTATCCTTTTTC+CGG - chr1_2:44844731-44844750 Msa0072170:intron 30.0%
!!! ACCCAGTTTTGAAATCATTT+TGG - chr1_2:44844774-44844793 Msa0072170:intron 30.0%
!!! TGAAATCATTTTGGTTCCTT+AGG - chr1_2:44844783-44844802 Msa0072170:intron 30.0%
CTTAATAAGACACTTCCATA+TGG + chr1_2:44844856-44844875 None:intergenic 30.0%
ATCCAGTATGTTCCAAAATT+AGG + chr1_2:44845089-44845108 None:intergenic 30.0%
ATTAAAGACGGGAAAGTTAT+TGG - chr1_2:44845107-44845126 Msa0072170:intron 30.0%
TGCACAGAATATATCTGTAT+TGG - chr1_2:44845291-44845310 Msa0072170:intron 30.0%
!!! TATTGGCTTCATTTTACTCT+AGG - chr1_2:44845308-44845327 Msa0072170:intron 30.0%
TACTCTAGGTTATATCTTAG+GGG - chr1_2:44845322-44845341 Msa0072170:intron 30.0%
! CCAAAAAGATCTTATTTGCA+AGG + chr1_2:44845492-44845511 None:intergenic 30.0%
! CCTTGCAAATAAGATCTTTT+TGG - chr1_2:44845489-44845508 Msa0072170:intron 30.0%
AAAAACATCGAAGATTTCGA+TGG + chr1_2:44845596-44845615 None:intergenic 30.0%
GAAATGATATTTGTAGTGAG+AGG - chr1_2:44845618-44845637 Msa0072170:five_prime_UTR 30.0%
AATGATATTTGTAGTGAGAG+GGG - chr1_2:44845620-44845639 Msa0072170:five_prime_UTR 30.0%
CAGATAACATAACATGTGAT+TGG - chr1_2:44845654-44845673 Msa0072170:five_prime_UTR 30.0%
GAAAAAAGAAGTAATTGACG+CGG + chr1_2:44845804-44845823 None:intergenic 30.0%
ACAGTTTGTGTGAAAGGAAT+CGG + chr1_2:44841451-44841470 None:intergenic 35.0%
GCCAGATCCATTCATTATAT+TGG + chr1_2:44841502-44841521 None:intergenic 35.0%
TCATTCAAGTACATCATCGT+TGG - chr1_2:44841647-44841666 Msa0072170:intron 35.0%
GAAGTTATATACCGCTTCTT+TGG + chr1_2:44842221-44842240 None:intergenic 35.0%
! AACATGTGCATGTTGTTTGA+AGG - chr1_2:44842323-44842342 Msa0072170:intron 35.0%
! ACATGTGCATGTTGTTTGAA+GGG - chr1_2:44842324-44842343 Msa0072170:intron 35.0%
GAGAAAAACACAAGAGGATA+AGG + chr1_2:44842623-44842642 None:intergenic 35.0%
TTGATGGAGAAAAACACAAG+AGG + chr1_2:44842629-44842648 None:intergenic 35.0%
!! ACTTTCAACGTCTTGTTTGA+TGG + chr1_2:44842645-44842664 None:intergenic 35.0%
TAAATTTCTCGGGACGAATA+TGG + chr1_2:44842749-44842768 None:intergenic 35.0%
TGTCCCATCACTAAATTTCT+CGG + chr1_2:44842760-44842779 None:intergenic 35.0%
GCAAAAATATGTCCATCACA+AGG + chr1_2:44842838-44842857 None:intergenic 35.0%
CAAAAATCCATAACTGCACA+AGG + chr1_2:44842931-44842950 None:intergenic 35.0%
GCACAAAGGTAAGATATGTA+AGG + chr1_2:44842964-44842983 None:intergenic 35.0%
TACATATCTTACCTTTGTGC+AGG - chr1_2:44842964-44842983 Msa0072170:intron 35.0%
AGCATTACAAACTTACACTC+CGG + chr1_2:44843034-44843053 None:intergenic 35.0%
GGAAAATTAAAGGAGGAAAG+GGG + chr1_2:44843074-44843093 None:intergenic 35.0%
GGGAAAATTAAAGGAGGAAA+GGG + chr1_2:44843075-44843094 None:intergenic 35.0%
ACAGAATGGGGGAAAATTAA+AGG + chr1_2:44843084-44843103 None:intergenic 35.0%
! AATTTTCCCCCATTCTGTTA+TGG - chr1_2:44843086-44843105 Msa0072170:intron 35.0%
! ATTTTCCCCCATTCTGTTAT+GGG - chr1_2:44843087-44843106 Msa0072170:intron 35.0%
ATTAACCCATAACAGAATGG+GGG + chr1_2:44843095-44843114 None:intergenic 35.0%
GGGTTATTGTGTCAAGTTAA+AGG - chr1_2:44843469-44843488 Msa0072170:intron 35.0%
AATTGAACCAATGATTGCAG+GGG - chr1_2:44843550-44843569 Msa0072170:CDS 35.0%
AAATCTCTGACTAGTGCAAA+AGG - chr1_2:44843620-44843639 Msa0072170:intron 35.0%
! GTTATAAGGTTGACCGATTT+CGG - chr1_2:44843784-44843803 Msa0072170:intron 35.0%
AAATTGTACGAGGCAATCAA+AGG - chr1_2:44843865-44843884 Msa0072170:CDS 35.0%
GCAATCAAAGGAAAGAAGAA+TGG - chr1_2:44843877-44843896 Msa0072170:intron 35.0%
GGGATATTATGCAAATAAGG+GGG - chr1_2:44844143-44844162 Msa0072170:intron 35.0%
AAGGGGGTCAATATCATTAA+AGG - chr1_2:44844159-44844178 Msa0072170:intron 35.0%
ATTAAAGGAACTGTTGCTAC+TGG - chr1_2:44844174-44844193 Msa0072170:CDS 35.0%
CCTTTGAATAGGGATATTTG+AGG + chr1_2:44844387-44844406 None:intergenic 35.0%
CCTCAAATATCCCTATTCAA+AGG - chr1_2:44844384-44844403 Msa0072170:intron 35.0%
GTTTCCAATGTATATGCTGT+TGG - chr1_2:44844570-44844589 Msa0072170:intron 35.0%
!! CCCTTTGAAATTGTACAATG+AGG - chr1_2:44844608-44844627 Msa0072170:intron 35.0%
ATGATTTCAAAACTGGGTGT+CGG + chr1_2:44844772-44844791 None:intergenic 35.0%
! ACATGCACAAACTTCTTTTC+TGG - chr1_2:44844826-44844845 Msa0072170:intron 35.0%
AATAAGACACTTCCATATGG+AGG + chr1_2:44844853-44844872 None:intergenic 35.0%
!! AAATTAGGCTTTGATGATGC+AGG + chr1_2:44845074-44845093 None:intergenic 35.0%
! GCATCATCAAAGCCTAATTT+TGG - chr1_2:44845074-44845093 Msa0072170:intron 35.0%
!!! AGCCTAATTTTGGAACATAC+TGG - chr1_2:44845084-44845103 Msa0072170:intron 35.0%
GGAACATACTGGATTAAAGA+CGG - chr1_2:44845095-44845114 Msa0072170:intron 35.0%
GAACATACTGGATTAAAGAC+GGG - chr1_2:44845096-44845115 Msa0072170:intron 35.0%
!! GAAAGTTATTGGTGCCTTTT+TGG - chr1_2:44845118-44845137 Msa0072170:intron 35.0%
TTTGTGAAGGACAAATTGCT+TGG - chr1_2:44845264-44845283 Msa0072170:intron 35.0%
TTGTGAAGGACAAATTGCTT+GGG - chr1_2:44845265-44845284 Msa0072170:intron 35.0%
ACTCTAGGTTATATCTTAGG+GGG - chr1_2:44845323-44845342 Msa0072170:intron 35.0%
GAAATTAGTCGTAACTGGTA+GGG + chr1_2:44845574-44845593 None:intergenic 35.0%
! GAAAGTGGTGGAAGCAATAA+CGG - chr1_2:44841395-44841414 Msa0072170:three_prime_UTR 40.0%
TTCAAGTACATCATCGTTGG+TGG - chr1_2:44841650-44841669 Msa0072170:intron 40.0%
AATTGTAGGGTTATGCAGCA+AGG - chr1_2:44842149-44842168 Msa0072170:CDS 40.0%
ATTGTAGGGTTATGCAGCAA+GGG - chr1_2:44842150-44842169 Msa0072170:CDS 40.0%
GGCAATCATATCCAAAGAAG+CGG - chr1_2:44842207-44842226 Msa0072170:CDS 40.0%
GTCCCGAGAAATTTAGTGAT+GGG - chr1_2:44842754-44842773 Msa0072170:intron 40.0%
GTCCCATCACTAAATTTCTC+GGG + chr1_2:44842759-44842778 None:intergenic 40.0%
CACAAGGGAATGATAGGTAA+GGG + chr1_2:44842822-44842841 None:intergenic 40.0%
TCACAAGGGAATGATAGGTA+AGG + chr1_2:44842823-44842842 None:intergenic 40.0%
TACCTATCATTCCCTTGTGA+TGG - chr1_2:44842823-44842842 Msa0072170:CDS 40.0%
! AAGCAAGGCTTACCTTTTTC+CGG - chr1_2:44843012-44843031 Msa0072170:CDS 40.0%
CAAACTTACACTCCGGAAAA+AGG + chr1_2:44843027-44843046 None:intergenic 40.0%
GGGGAAAATTAAAGGAGGAA+AGG + chr1_2:44843076-44843095 None:intergenic 40.0%
GAATGGGGGAAAATTAAAGG+AGG + chr1_2:44843081-44843100 None:intergenic 40.0%
GATATTCAGAGTGACAAGCA+AGG + chr1_2:44843263-44843282 None:intergenic 40.0%
GAGAAAGATTGCTTCCAGAA+TGG - chr1_2:44843358-44843377 Msa0072170:CDS 40.0%
CCTTTCTCATTGTACCATTC+TGG + chr1_2:44843375-44843394 None:intergenic 40.0%
CCAGAATGGTACAATGAGAA+AGG - chr1_2:44843372-44843391 Msa0072170:CDS 40.0%
! TAGTCAGAGATTTTGCAGCA+AGG + chr1_2:44843613-44843632 None:intergenic 40.0%
CCAGACTTTGGTTATTGCAA+CGG - chr1_2:44843658-44843677 Msa0072170:intron 40.0%
CAGACTTTGGTTATTGCAAC+GGG - chr1_2:44843659-44843678 Msa0072170:intron 40.0%
GATTGCCTCGTACAATTTGT+CGG + chr1_2:44843863-44843882 None:intergenic 40.0%
AAAGAAGAATGGGAAAGCTG+TGG - chr1_2:44843888-44843907 Msa0072170:intron 40.0%
ATGCACAAATTCGCATGAGT+GGG + chr1_2:44844043-44844062 None:intergenic 40.0%
TATGCACAAATTCGCATGAG+TGG + chr1_2:44844044-44844063 None:intergenic 40.0%
TGAAATAGCTGCGTTCTATG+AGG - chr1_2:44844122-44844141 Msa0072170:intron 40.0%
GAAATAGCTGCGTTCTATGA+GGG - chr1_2:44844123-44844142 Msa0072170:intron 40.0%
GTAACTTTCATCCATCTGTC+AGG - chr1_2:44844290-44844309 Msa0072170:intron 40.0%
! GACTTCTTTTACCTGACAGA+TGG + chr1_2:44844304-44844323 None:intergenic 40.0%
AAGTCAAACTAAAGGACGGA+AGG - chr1_2:44844319-44844338 Msa0072170:intron 40.0%
AGTCAAACTAAAGGACGGAA+GGG - chr1_2:44844320-44844339 Msa0072170:intron 40.0%
GAAGCAGATATCGTTGTTGT+TGG - chr1_2:44844348-44844367 Msa0072170:intron 40.0%
! GATATCGTTGTTGTTGGTGT+TGG - chr1_2:44844354-44844373 Msa0072170:intron 40.0%
AATATCCCTATTCAAAGGGC+AGG - chr1_2:44844389-44844408 Msa0072170:intron 40.0%
TTCAACCTGCCCTTTGAATA+GGG + chr1_2:44844397-44844416 None:intergenic 40.0%
GTTAGTGATACCATATCCAG+AGG - chr1_2:44844438-44844457 Msa0072170:intron 40.0%
ATCGCCAACAGCATATACAT+TGG + chr1_2:44844577-44844596 None:intergenic 40.0%
TGATTTCAAAACTGGGTGTC+GGG + chr1_2:44844771-44844790 None:intergenic 40.0%
TGTTCTGCTATGTAGAAGGT+TGG + chr1_2:44844809-44844828 None:intergenic 40.0%
TGCATGTTCTGCTATGTAGA+AGG + chr1_2:44844813-44844832 None:intergenic 40.0%
!! TTCTTTTCTGGTCCTCCATA+TGG - chr1_2:44844838-44844857 Msa0072170:intron 40.0%
AATGAGCGGGAATAGAAGTA+TGG + chr1_2:44844987-44845006 None:intergenic 40.0%
GATCTGTCTTGGCAATTCTA+CGG - chr1_2:44845008-44845027 Msa0072170:CDS 40.0%
!! AGTTATTGGTGCCTTTTTGG+AGG - chr1_2:44845121-44845140 Msa0072170:intron 40.0%
!! GTTATTGGTGCCTTTTTGGA+GGG - chr1_2:44845122-44845141 Msa0072170:intron 40.0%
!! GCAATAGCTTTGTTCTCATC+AGG + chr1_2:44845155-44845174 None:intergenic 40.0%
GGATGTGAATCAACTTGCAA+AGG - chr1_2:44845205-44845224 Msa0072170:intron 40.0%
GTGAATCAACTTGCAAAGGA+AGG - chr1_2:44845209-44845228 Msa0072170:intron 40.0%
TGTGAAGGACAAATTGCTTG+GGG - chr1_2:44845266-44845285 Msa0072170:intron 40.0%
CTCTAGGTTATATCTTAGGG+GGG - chr1_2:44845324-44845343 Msa0072170:intron 40.0%
! GCGTCAACGACTTCTTTTTA+TGG - chr1_2:44845544-44845563 Msa0072170:exon 40.0%
GGAAATTAGTCGTAACTGGT+AGG + chr1_2:44845575-44845594 None:intergenic 40.0%
CGATGGAAATTAGTCGTAAC+TGG + chr1_2:44845579-44845598 None:intergenic 40.0%
GTATTTGGCAGAAATCAGGA+GGG + chr1_2:44845697-44845716 None:intergenic 40.0%
AGTATTTGGCAGAAATCAGG+AGG + chr1_2:44845698-44845717 None:intergenic 40.0%
CTCAGTATTTGGCAGAAATC+AGG + chr1_2:44845701-44845720 None:intergenic 40.0%
CTGATTTCTGCCAAATACTG+AGG - chr1_2:44845699-44845718 Msa0072170:five_prime_UTR 40.0%
CTGACGTGGCAATTTAACAG+TGG + chr1_2:44841427-44841446 None:intergenic 45.0%
! AAGTACATCATCGTTGGTGG+TGG - chr1_2:44841653-44841672 Msa0072170:intron 45.0%
AGCAAGGGAGTTTGTGAAAC+AGG - chr1_2:44842165-44842184 Msa0072170:CDS 45.0%
GCAAGGGAGTTTGTGAAACA+GGG - chr1_2:44842166-44842185 Msa0072170:CDS 45.0%
TGAAACAGGGAGTTAAGCCT+GGG - chr1_2:44842179-44842198 Msa0072170:CDS 45.0%
CGTCCCGAGAAATTTAGTGA+TGG - chr1_2:44842753-44842772 Msa0072170:intron 45.0%
GTCCATCACAAGGGAATGAT+AGG + chr1_2:44842828-44842847 None:intergenic 45.0%
AGGCTCAGCCAATAAATACG+TGG + chr1_2:44842911-44842930 None:intergenic 45.0%
! ATAAGGTGCTACCTGCACAA+AGG + chr1_2:44842978-44842997 None:intergenic 45.0%
CTTAGAGCAGGACGTTCATA+AGG + chr1_2:44842995-44843014 None:intergenic 45.0%
TTCCATACCTGTGTTGGAAG+TGG - chr1_2:44843333-44843352 Msa0072170:CDS 45.0%
TCCATACCTGTGTTGGAAGT+GGG - chr1_2:44843334-44843353 Msa0072170:CDS 45.0%
AACTGTACCCCTGCAATCAT+TGG + chr1_2:44843560-44843579 None:intergenic 45.0%
CCGTTGCAATAACCAAAGTC+TGG + chr1_2:44843661-44843680 None:intergenic 45.0%
! TTGACCGATTTCGGTGTAGA+AGG - chr1_2:44843793-44843812 Msa0072170:intron 45.0%
AGCTCCTTCTACACCGAAAT+CGG + chr1_2:44843800-44843819 None:intergenic 45.0%
TGATGCCGACAAATTGTACG+AGG - chr1_2:44843855-44843874 Msa0072170:CDS 45.0%
AATGGGAAAGCTGTGGTTGT+TGG - chr1_2:44843895-44843914 Msa0072170:intron 45.0%
ATGGGAAAGCTGTGGTTGTT+GGG - chr1_2:44843896-44843915 Msa0072170:intron 45.0%
ACTTACTGCACCAAGGTTCT+GGG + chr1_2:44843990-44844009 None:intergenic 45.0%
AATGTCCACTTACTGCACCA+AGG + chr1_2:44843997-44844016 None:intergenic 45.0%
GGATTCACCTCTAATTCCGA+TGG - chr1_2:44844195-44844214 Msa0072170:intron 45.0%
TACCTCTCCATCGGAATTAG+AGG + chr1_2:44844205-44844224 None:intergenic 45.0%
CTAATTCCGATGGAGAGGTA+TGG - chr1_2:44844205-44844224 Msa0072170:intron 45.0%
CAGTATTCCGAGATCACATG+CGG + chr1_2:44844231-44844250 None:intergenic 45.0%
CTCGGAATACTGTCATGTGA+TGG - chr1_2:44844239-44844258 Msa0072170:intron 45.0%
!! ATCGTTGTTGTTGGTGTTGG+AGG - chr1_2:44844357-44844376 Msa0072170:intron 45.0%
CTTCAACCTGCCCTTTGAAT+AGG + chr1_2:44844398-44844417 None:intergenic 45.0%
! ATTCAAAGGGCAGGTTGAAG+AGG - chr1_2:44844398-44844417 Msa0072170:intron 45.0%
TTGACACAAGCCTCTGGATA+TGG + chr1_2:44844451-44844470 None:intergenic 45.0%
TAAAGCTTGACACAAGCCTC+TGG + chr1_2:44844457-44844476 None:intergenic 45.0%
ATAGGGATCATGCCGGAAAA+AGG + chr1_2:44844746-44844765 None:intergenic 45.0%
!! AAACTGGGTGTCGGGATATA+GGG + chr1_2:44844763-44844782 None:intergenic 45.0%
!! AAAACTGGGTGTCGGGATAT+AGG + chr1_2:44844764-44844783 None:intergenic 45.0%
!! CTATGTAGAAGGTTGGCCTA+AGG + chr1_2:44844802-44844821 None:intergenic 45.0%
!! TGCCAGTGCTGTTCATTTTG+TGG - chr1_2:44844885-44844904 Msa0072170:intron 45.0%
!! GCCAGTGCTGTTCATTTTGT+GGG - chr1_2:44844886-44844905 Msa0072170:intron 45.0%
TCCCACAAAATGAACAGCAC+TGG + chr1_2:44844890-44844909 None:intergenic 45.0%
CCAAGACAGATCAAATGAGC+GGG + chr1_2:44845000-44845019 None:intergenic 45.0%
GCCAAGACAGATCAAATGAG+CGG + chr1_2:44845001-44845020 None:intergenic 45.0%
!! GTTGGTGACACAGTGCTATT+TGG - chr1_2:44845038-44845057 Msa0072170:intron 45.0%
TGATTCACATCCTTCACTGC+AGG + chr1_2:44845197-44845216 None:intergenic 45.0%
ATCTCTCGCGAACATCACAA+AGG + chr1_2:44845753-44845772 None:intergenic 45.0%
TGAAAGGAATCGGACTGACG+TGG + chr1_2:44841441-44841460 None:intergenic 50.0%
GTGAAACAGGGAGTTAAGCC+TGG - chr1_2:44842178-44842197 Msa0072170:CDS 50.0%
GAAACAGGGAGTTAAGCCTG+GGG - chr1_2:44842180-44842199 Msa0072170:CDS 50.0%
! TGAACGTCCTGCTCTAAGCA+AGG - chr1_2:44842997-44843016 Msa0072170:CDS 50.0%
AGGTAAGCCTTGCTTAGAGC+AGG + chr1_2:44843007-44843026 None:intergenic 50.0%
CCATACCTGTGTTGGAAGTG+GGG - chr1_2:44843335-44843354 Msa0072170:CDS 50.0%
CATACCTGTGTTGGAAGTGG+GGG - chr1_2:44843336-44843355 Msa0072170:CDS 50.0%
! TTGCAACGGGCTCAACTGTA+AGG - chr1_2:44843672-44843691 Msa0072170:intron 50.0%
TGGGAAAGCTGTGGTTGTTG+GGG - chr1_2:44843897-44843916 Msa0072170:intron 50.0%
GTTGTTGGGGGAGGATACAT+TGG - chr1_2:44843910-44843929 Msa0072170:intron 50.0%
CACTTACTGCACCAAGGTTC+TGG + chr1_2:44843991-44844010 None:intergenic 50.0%
! CAGAACCTTGGTGCAGTAAG+TGG - chr1_2:44843989-44844008 Msa0072170:intron 50.0%
CACAAATTCGCATGAGTGGG+AGG + chr1_2:44844040-44844059 None:intergenic 50.0%
CACCTCTAATTCCGATGGAG+AGG - chr1_2:44844200-44844219 Msa0072170:intron 50.0%
! ACTAAAGGACGGAAGGGTAC+TGG - chr1_2:44844326-44844345 Msa0072170:intron 50.0%
AGAGGAGAAGGGTGGAATCA+AGG - chr1_2:44844416-44844435 Msa0072170:intron 50.0%
TCGGGATATAGGGATCATGC+CGG + chr1_2:44844753-44844772 None:intergenic 50.0%
CCCGCTCATTTGATCTGTCT+TGG - chr1_2:44844997-44845016 Msa0072170:CDS 50.0%
CAATTCTACGGCGACAACGT+TGG - chr1_2:44845020-44845039 Msa0072170:CDS 50.0%
!! ATTGGTGCCTTTTTGGAGGG+CGG - chr1_2:44845125-44845144 Msa0072170:intron 50.0%
!! AAGAGCATTGCCTGCAGTGA+AGG - chr1_2:44845184-44845203 Msa0072170:intron 50.0%
GATATGATTGCCAGCTCCCC+AGG + chr1_2:44842199-44842218 None:intergenic 55.0%
! GGCTGAGCCTTGTGCAGTTA+TGG - chr1_2:44842921-44842940 Msa0072170:intron 55.0%
CAGCTCCTGCTAGACTTCCT+GGG - chr1_2:44843310-44843329 Msa0072170:CDS 55.0%
TGGAACCCAGGAAGTCTAGC+AGG + chr1_2:44843318-44843337 None:intergenic 55.0%
CCAACACAGGTATGGAACCC+AGG + chr1_2:44843330-44843349 None:intergenic 55.0%
CCTGGGTTCCATACCTGTGT+TGG - chr1_2:44843327-44843346 Msa0072170:CDS 55.0%
CCCCACTTCCAACACAGGTA+TGG + chr1_2:44843338-44843357 None:intergenic 55.0%
TTCTCCCCCACTTCCAACAC+AGG + chr1_2:44843343-44843362 None:intergenic 55.0%
GGGAAAGCTGTGGTTGTTGG+GGG - chr1_2:44843898-44843917 Msa0072170:intron 55.0%
AAAGCTGTGGTTGTTGGGGG+AGG - chr1_2:44843901-44843920 Msa0072170:intron 55.0%
TGGGGGAGGATACATTGGTC+TGG - chr1_2:44843915-44843934 Msa0072170:intron 55.0%
!! CCAAGGTTCTGGGTAGACCA+TGG + chr1_2:44843980-44843999 None:intergenic 55.0%
CCATGGTCTACCCAGAACCT+TGG - chr1_2:44843977-44843996 Msa0072170:intron 55.0%
ATGCGGCCATACCTCTCCAT+CGG + chr1_2:44844214-44844233 None:intergenic 55.0%
GGTATGGCCGCATGTGATCT+CGG - chr1_2:44844221-44844240 Msa0072170:intron 55.0%
! AGGGCAGGTTGAAGAGGAGA+AGG - chr1_2:44844404-44844423 Msa0072170:intron 55.0%
! GGGCAGGTTGAAGAGGAGAA+GGG - chr1_2:44844405-44844424 Msa0072170:intron 55.0%
! CAGGTTGAAGAGGAGAAGGG+TGG - chr1_2:44844408-44844427 Msa0072170:intron 55.0%
TGCTCGCAAATCAGCTGAGC+AGG - chr1_2:44844656-44844675 Msa0072170:intron 55.0%
TCCTGCCTCTGCTGCAATGA+TGG + chr1_2:44844937-44844956 None:intergenic 55.0%
AGGAGTTCCGCCCTCCAAAA+AGG + chr1_2:44845135-44845154 None:intergenic 55.0%
GCAGCTCCTGCTAGACTTCC+TGG - chr1_2:44843309-44843328 Msa0072170:CDS 60.0%
ATCAGCTGAGCAGGCTGCGA+AGG - chr1_2:44844665-44844684 Msa0072170:intron 60.0%
GCAGGCCATCATTGCAGCAG+AGG - chr1_2:44844929-44844948 Msa0072170:intron 60.0%
GCCATCATTGCAGCAGAGGC+AGG - chr1_2:44844933-44844952 Msa0072170:intron 60.0%
GGGAGTTAAGCCTGGGGAGC+TGG - chr1_2:44842186-44842205 Msa0072170:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 44841363 44845834 44841363 ID=Msa0072170;Name=Msa0072170
chr1_2 mRNA 44841363 44845834 44841363 ID=Msa0072170-mRNA-1;Parent=Msa0072170;Name=Msa0072170-mRNA-1;_AED=0.08;_eAED=0.08;_QI=272|1|1|1|0.9|0.81|11|343|434
chr1_2 exon 44841363 44841460 44841363 ID=Msa0072170-mRNA-1:exon:13540;Parent=Msa0072170-mRNA-1
chr1_2 exon 44841696 44842264 44841696 ID=Msa0072170-mRNA-1:exon:13539;Parent=Msa0072170-mRNA-1
chr1_2 exon 44842511 44842651 44842511 ID=Msa0072170-mRNA-1:exon:13538;Parent=Msa0072170-mRNA-1
chr1_2 exon 44842760 44842885 44842760 ID=Msa0072170-mRNA-1:exon:13537;Parent=Msa0072170-mRNA-1
chr1_2 exon 44842976 44843094 44842976 ID=Msa0072170-mRNA-1:exon:13536;Parent=Msa0072170-mRNA-1
chr1_2 exon 44843194 44843413 44843194 ID=Msa0072170-mRNA-1:exon:13535;Parent=Msa0072170-mRNA-1
chr1_2 exon 44843509 44843627 44843509 ID=Msa0072170-mRNA-1:exon:13534;Parent=Msa0072170-mRNA-1
chr1_2 exon 44843804 44843884 44843804 ID=Msa0072170-mRNA-1:exon:13533;Parent=Msa0072170-mRNA-1
chr1_2 exon 44844160 44844211 44844160 ID=Msa0072170-mRNA-1:exon:13532;Parent=Msa0072170-mRNA-1
chr1_2 exon 44844969 44845040 44844969 ID=Msa0072170-mRNA-1:exon:13531;Parent=Msa0072170-mRNA-1
chr1_2 exon 44845512 44845834 44845512 ID=Msa0072170-mRNA-1:exon:13530;Parent=Msa0072170-mRNA-1
chr1_2 five_prime_UTR 44845563 44845834 44845563 ID=Msa0072170-mRNA-1:five_prime_utr;Parent=Msa0072170-mRNA-1
chr1_2 CDS 44845512 44845562 44845512 ID=Msa0072170-mRNA-1:cds;Parent=Msa0072170-mRNA-1
chr1_2 CDS 44844969 44845040 44844969 ID=Msa0072170-mRNA-1:cds;Parent=Msa0072170-mRNA-1
chr1_2 CDS 44844160 44844211 44844160 ID=Msa0072170-mRNA-1:cds;Parent=Msa0072170-mRNA-1
chr1_2 CDS 44843804 44843884 44843804 ID=Msa0072170-mRNA-1:cds;Parent=Msa0072170-mRNA-1
chr1_2 CDS 44843509 44843627 44843509 ID=Msa0072170-mRNA-1:cds;Parent=Msa0072170-mRNA-1
chr1_2 CDS 44843194 44843413 44843194 ID=Msa0072170-mRNA-1:cds;Parent=Msa0072170-mRNA-1
chr1_2 CDS 44842976 44843094 44842976 ID=Msa0072170-mRNA-1:cds;Parent=Msa0072170-mRNA-1
chr1_2 CDS 44842760 44842885 44842760 ID=Msa0072170-mRNA-1:cds;Parent=Msa0072170-mRNA-1
chr1_2 CDS 44842511 44842651 44842511 ID=Msa0072170-mRNA-1:cds;Parent=Msa0072170-mRNA-1
chr1_2 CDS 44841941 44842264 44841941 ID=Msa0072170-mRNA-1:cds;Parent=Msa0072170-mRNA-1
chr1_2 three_prime_UTR 44841696 44841940 44841696 ID=Msa0072170-mRNA-1:three_prime_utr;Parent=Msa0072170-mRNA-1
chr1_2 three_prime_UTR 44841363 44841460 44841363 ID=Msa0072170-mRNA-1:three_prime_utr;Parent=Msa0072170-mRNA-1
Gene Sequence

>Msa0072170

ATGGCGGAACATTCATTCAAGTACATCATCGTTGGTGGTGGAGTTTCAGCTGGTTATGCAGCAAGGGAGTTTGTGAAACAGGGAGTTAAGCCTGGGGAGCTGGCAATCATATCCAAAGAAGCGGTAGCACCTTATGAACGTCCTGCTCTAAGCAAGGCTTACCTTTTTCCGGAGTCTCCTGCTAGACTTCCTGGGTTCCATACCTGTGTTGGAAGTGGGGGAGAAAGATTGCTTCCAGAATGGTACAATGAGAAAGGGGTACAGTTGCATCTTAGTACAGAAATTGTAAAAGCAGACCTTGCTGCAAAATCTCTGACTAGTGCAAAAGGAGAAACATTCAAATACCAGACTTTGGTTATTGCAACGGGCTCAACTGTTATAAGGTTGACCGATTTCGGTGTAGAAGGAGCTGATGCCAAAAATATATTTTATTTGAGGGAGGTTGATGATGCCGACAAATTGTACGAGGCAATCAAAGGAAAGAAGAATGGGAAAGCTGTGGTTGTTGGGGGAGGATACATTGGTCTGGAGTTGAGTGCAGTTTTGAGACTCAATAATATTGATGTTACCATGGTCTACCCAGAACCTTGGTGCATGCCAAGACTTTTTACTGCTGAAATAGCTGCGTTCTATGAGGGATATTATGCAAATAAGGGGGTCAATATCATTAAAGGAACTGTTGCTACTGGATTCACCTCTAATTCCGATGGAGAGGTAAAAGAAGTCAAACTAAAGGACGGAAGGGTACTGGAAGCAGATATCGTTGTTGTTGGTGTTGGAGGAAGACCTCAAATATCCCTATTCAAAGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAGACTGATTCCTTCTTCAAAACAAATGTTTCCAATGTATATGCTGTTGGCGATGTTGCTACGTTCCCTTTGAAATTGTACAATGAGGTGAGAAGAGTTGAACATGTTGATCATGCTCGCAAATCAGCTGAGCAGGCTGCGAAGGCCATCATTGCAGCAGAGGCAGGAAAAACAGTTGAAGAGTATGATTATCTTCCATACTTCTATTCCCGCTCATTTGATCTGTCTTGGCAATTCTACGGCGACAACGTTGGTGACACAGTGCTATTTGGAGACAACAATCCTGCATCATCAAAGCCTAATTTTGGAACATACTGGATTAAAGACGGGAAAGTTATTGGTGCCTTTTTGGAGGGCGGAACTCCTGATGAGAACAAAGCTATTGCAAAAGTTGCAAGAGCATTGCCTGCAGTGAAGGATGTGAATCAACTTGCAAAGGAAGGCATTACTTTTGCCAGTAAATTTTAA

Protein sequence

>Msa0072170

MAEHSFKYIIVGGGVSAGYAAREFVKQGVKPGELAIISKEAVAPYERPALSKAYLFPESPARLPGFHTCVGSGGERLLPEWYNEKGVQLHLSTEIVKADLAAKSLTSAKGETFKYQTLVIATGSTVIRLTDFGVEGADAKNIFYLREVDDADKLYEAIKGKKNGKAVVVGGGYIGLELSAVLRLNNIDVTMVYPEPWCMPRLFTAEIAAFYEGYYANKGVNIIKGTVATGFTSNSDGEVKEVKLKDGRVLEADIVVVGVGGRPQISLFKGQVEEEKGGIKTDSFFKTNVSNVYAVGDVATFPLKLYNEVRRVEHVDHARKSAEQAAKAIIAAEAGKTVEEYDYLPYFYSRSFDLSWQFYGDNVGDTVLFGDNNPASSKPNFGTYWIKDGKVIGAFLEGGTPDENKAIAKVARALPAVKDVNQLAKEGITFASKF*