Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608910 | XP_024638558.1 | 98.349 | 424 | 7 | 0 | 1 | 424 | 1 | 424 | 0.0 | 877 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608910 | sp|P46643|AAT1_ARATH | 78.873 | 426 | 88 | 1 | 1 | 424 | 5 | 430 | 0.0 | 720 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026660 | Msa0608910 | 0.820044 | 8.445074e-53 | -8.615850e-47 |
| Msa0036370 | Msa0608910 | 0.810995 | 8.736531e-51 | -8.615850e-47 |
| Msa0072170 | Msa0608910 | 0.812637 | 3.835613e-51 | -8.615850e-47 |
| Msa0090030 | Msa0608910 | 0.805377 | 1.374515e-49 | -8.615850e-47 |
| Msa0120540 | Msa0608910 | 0.812466 | 4.181044e-51 | -8.615850e-47 |
| Msa0608910 | Msa0649410 | 0.927061 | 1.984411e-91 | -8.615850e-47 |
| Msa0608910 | Msa0649450 | 0.932006 | 1.625858e-94 | -8.615850e-47 |
| Msa0608910 | Msa0663510 | 0.814287 | 1.663802e-51 | -8.615850e-47 |
| Msa0608910 | Msa0820530 | -0.808322 | 3.278651e-50 | -8.615850e-47 |
| Msa0608910 | Msa1172130 | -0.805298 | 1.428153e-49 | -8.615850e-47 |
| Msa0608910 | Msa1178050 | 0.803543 | 3.315204e-49 | -8.615850e-47 |
| Msa0608910 | Msa1296300 | 0.816508 | 5.335078e-52 | -8.615850e-47 |
| Msa0608910 | Msa1363700 | 0.820560 | 6.430306e-53 | -8.615850e-47 |
| Msa0608910 | Msa1393800 | 0.826551 | 2.549116e-54 | -8.615850e-47 |
| Msa0608910 | Msa1438450 | 0.807574 | 4.729886e-50 | -8.615850e-47 |
| Msa0608910 | Msa1450870 | 0.808123 | 3.614924e-50 | -8.615850e-47 |
| Msa0194720 | Msa0608910 | 0.825584 | 4.328431e-54 | -8.615850e-47 |
| Msa0436200 | Msa0608910 | 0.807610 | 4.646239e-50 | -8.615850e-47 |
| Msa0252240 | Msa0608910 | 0.810895 | 9.182365e-51 | -8.615850e-47 |
| Msa0265160 | Msa0608910 | 0.820769 | 5.757013e-53 | -8.615850e-47 |
| Msa0291020 | Msa0608910 | 0.800392 | 1.472329e-48 | -8.615850e-47 |
| Msa0555400 | Msa0608910 | 0.867858 | 1.003840e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608910 | MtrunA17_Chr4g0041371 | 98.349 | 424 | 7 | 0 | 1 | 424 | 1 | 424 | 0.0 | 877 |
| Msa0608910 | MtrunA17_Chr4g0041351 | 92.437 | 238 | 18 | 0 | 187 | 424 | 1 | 238 | 4.06e-168 | 471 |
| Msa0608910 | MtrunA17_Chr3g0139821 | 51.378 | 399 | 192 | 1 | 25 | 421 | 56 | 454 | 4.94e-147 | 426 |
| Msa0608910 | MtrunA17_Chr1g0149721 | 48.354 | 395 | 202 | 2 | 25 | 417 | 63 | 457 | 7.58e-136 | 397 |
| Msa0608910 | MtrunA17_Chr4g0041361 | 85.987 | 157 | 16 | 2 | 1 | 156 | 1 | 152 | 3.50e-92 | 275 |
| Msa0608910 | MtrunA17_Chr4g0005811 | 54.167 | 48 | 22 | 0 | 296 | 343 | 24 | 71 | 4.04e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608910 | AT2G30970.1 | 78.873 | 426 | 88 | 1 | 1 | 424 | 5 | 430 | 0.0 | 720 |
| Msa0608910 | AT2G30970.2 | 78.873 | 426 | 88 | 1 | 1 | 424 | 5 | 430 | 0.0 | 720 |
| Msa0608910 | AT5G19550.1 | 50.503 | 398 | 195 | 1 | 23 | 418 | 1 | 398 | 2.55e-147 | 425 |
| Msa0608910 | AT5G11520.1 | 51.741 | 402 | 192 | 1 | 25 | 424 | 47 | 448 | 3.30e-147 | 426 |
| Msa0608910 | AT1G62800.1 | 47.619 | 399 | 209 | 0 | 23 | 421 | 1 | 399 | 8.02e-138 | 400 |
| Msa0608910 | AT1G62800.2 | 47.382 | 401 | 209 | 1 | 23 | 421 | 1 | 401 | 2.77e-136 | 397 |
| Msa0608910 | AT4G31990.1 | 46.135 | 414 | 220 | 3 | 6 | 417 | 33 | 445 | 7.76e-134 | 392 |
| Msa0608910 | AT4G31990.2 | 46.135 | 414 | 220 | 3 | 6 | 417 | 33 | 445 | 7.76e-134 | 392 |
| Msa0608910 | AT4G31990.3 | 46.135 | 414 | 220 | 3 | 6 | 417 | 33 | 445 | 1.77e-133 | 392 |
| Msa0608910 | AT4G31990.4 | 47.342 | 395 | 206 | 2 | 25 | 417 | 46 | 440 | 2.86e-133 | 390 |
| Msa0608910 | AT1G62800.3 | 47.493 | 339 | 176 | 1 | 23 | 359 | 1 | 339 | 2.10e-112 | 333 |
Find 133 sgRNAs with CRISPR-Local
Find 309 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGATGATGGTCATTTATT+AGG | 0.163800 | 4_2:-56266979 | Msa0608910:CDS |
| GCTGCAGTTCAGGCTTTATC+TGG | 0.203926 | 4_2:-56267863 | Msa0608910:CDS |
| AACTACACTACGAGAGAATT+TGG | 0.231543 | 4_2:-56265893 | Msa0608910:CDS |
| ACTCCAACATTAACTTTGTT+TGG | 0.243943 | 4_2:+56269956 | None:intergenic |
| GTTGCATAATTGAATAATTT+AGG | 0.248563 | 4_2:+56265315 | None:intergenic |
| TACCTCAGAAGTAGAATTAT+TGG | 0.248615 | 4_2:-56265261 | Msa0608910:three_prime_UTR |
| TACAGTTACAAAGTTAGTTT+TGG | 0.271828 | 4_2:-56270184 | Msa0608910:five_prime_UTR |
| AAATCCAACCCTTTAGATTC+AGG | 0.281836 | 4_2:+56267555 | None:intergenic |
| TGGGAACTGGTATATAGATT+TGG | 0.284181 | 4_2:+56267786 | None:intergenic |
| TGGACTGATGGATGACATTA+AGG | 0.291323 | 4_2:-56267529 | Msa0608910:intron |
| AAAACTTGACTCACATGAAT+TGG | 0.295790 | 4_2:+56269551 | None:intergenic |
| ACGAGAGAATTTGGAAAATC+TGG | 0.306043 | 4_2:-56265884 | Msa0608910:CDS |
| TGAGAAGTAGATTGAATAAG+AGG | 0.318062 | 4_2:-56265153 | Msa0608910:three_prime_UTR |
| TAGTAACGGTATGTCTTTAT+TGG | 0.320777 | 4_2:+56267582 | None:intergenic |
| GATTCATGTCTTCATGGTTC+AGG | 0.330358 | 4_2:-56270045 | Msa0608910:CDS |
| AGCCACAACTTCTTCAAGTC+TGG | 0.343190 | 4_2:+56266486 | None:intergenic |
| TACAGCAATCCACCTCTTCA+TGG | 0.366324 | 4_2:-56266540 | Msa0608910:CDS |
| GAAGCAGAGAGGAGAATTGC+AGG | 0.369047 | 4_2:-56269577 | Msa0608910:CDS |
| TTAGTCTCAATCAACTTATA+AGG | 0.370879 | 4_2:+56265008 | None:intergenic |
| GTCAAACGATCAACCTGTTC+TGG | 0.382951 | 4_2:+56265560 | None:intergenic |
| AATTATAACAGGGCGCATAT+CGG | 0.387711 | 4_2:-56269639 | Msa0608910:intron |
| TGACTCGTAATGGTCGTATA+AGG | 0.390208 | 4_2:-56265517 | Msa0608910:intron |
| ATTACAGCCACCATAACATT+TGG | 0.393881 | 4_2:-56267620 | Msa0608910:intron |
| GAGCTAGATTCATGTCTTCA+TGG | 0.394825 | 4_2:-56270051 | Msa0608910:CDS |
| GGGAACTGGTATATAGATTT+GGG | 0.398341 | 4_2:+56267787 | None:intergenic |
| TAAACGAATAGCTGCAGTTC+AGG | 0.408353 | 4_2:-56267873 | Msa0608910:CDS |
| TCAACGGACAATTTCTCAAC+CGG | 0.420413 | 4_2:-56270087 | Msa0608910:CDS |
| CATATTTACATGACTCGTAA+TGG | 0.427237 | 4_2:-56265527 | Msa0608910:CDS |
| CAGCATCTCTCCAAATGTTA+TGG | 0.427253 | 4_2:+56267610 | None:intergenic |
| GACTTGGACCAGGTGGGAAC+TGG | 0.436048 | 4_2:+56267773 | None:intergenic |
| CTTGTCGTTTCAACTGTCCT+TGG | 0.436753 | 4_2:-56266513 | Msa0608910:CDS |
| CAGTATGGCTGGTCTTAATA+CGG | 0.443084 | 4_2:-56265386 | Msa0608910:CDS |
| GAATCACTGAAGCTGGCATA+TGG | 0.444094 | 4_2:-56267920 | Msa0608910:CDS |
| ATTATAACAGGGCGCATATC+GGG | 0.453076 | 4_2:-56269638 | Msa0608910:intron |
| CGAGAGAATTTGGAAAATCT+GGG | 0.454321 | 4_2:-56265883 | Msa0608910:CDS |
| GTTATGGCAGACCGCATCAT+TGG | 0.454392 | 4_2:-56265922 | Msa0608910:CDS |
| TGGTATATAGATTTGGGTGT+TGG | 0.456286 | 4_2:+56267793 | None:intergenic |
| TATGATTGTTTGCAGGCTAA+AGG | 0.462192 | 4_2:-56267084 | Msa0608910:intron |
| TGGATTGCTGTACATGGGTC+TGG | 0.465606 | 4_2:+56266551 | None:intergenic |
| TGCATTCAACTGAACCTGAT+TGG | 0.467234 | 4_2:+56265834 | None:intergenic |
| GCTTGTGCTCACAATCCTAC+TGG | 0.469061 | 4_2:-56267232 | Msa0608910:CDS |
| AATCCAACCCTTTAGATTCA+GGG | 0.470231 | 4_2:+56267556 | None:intergenic |
| TTTCATTTCCTCTGTTTCCA+TGG | 0.471629 | 4_2:-56270125 | Msa0608910:exon |
| TCTCTCCATTGTTCTTCTGA+AGG | 0.474653 | 4_2:+56267202 | None:intergenic |
| CAGCGGGATGACACCAGAAC+AGG | 0.474884 | 4_2:-56265573 | Msa0608910:CDS |
| GTTCAGGCTTTATCTGGGAC+TGG | 0.478849 | 4_2:-56267857 | Msa0608910:CDS |
| TACTATCACCCTGAATCTAA+AGG | 0.480649 | 4_2:-56267564 | Msa0608910:CDS |
| GGAGGGAGCTGAATAAAAGT+TGG | 0.480734 | 4_2:-56265240 | Msa0608910:three_prime_UTR |
| ACTATCACCCTGAATCTAAA+GGG | 0.481415 | 4_2:-56267563 | Msa0608910:CDS |
| GGTATATAGATTTGGGTGTT+GGG | 0.481546 | 4_2:+56267794 | None:intergenic |
| ACTCCGAGGATTGGATCCTT+AGG | 0.493438 | 4_2:+56270007 | None:intergenic |
| ATGGAATCACATAACCAATC+AGG | 0.493504 | 4_2:-56265848 | Msa0608910:intron |
| TAGCTCCGGTGACGGAGCTC+CGG | 0.500615 | 4_2:+56270068 | None:intergenic |
| GCAAATGAAACAAAGGGAAA+AGG | 0.502975 | 4_2:+56265197 | None:intergenic |
| GCTTCGGTAACTCCGAGGAT+TGG | 0.504812 | 4_2:+56269998 | None:intergenic |
| GAGCAGGGAGTATCTTCCCA+TGG | 0.505060 | 4_2:-56267966 | Msa0608910:intron |
| CTGATCCGCAAGAAAAGCTT+CGG | 0.505274 | 4_2:+56269982 | None:intergenic |
| ATTGAGACTAATGATTAATG+AGG | 0.509902 | 4_2:-56264996 | Msa0608910:three_prime_UTR |
| ACCTAAGGCATCCAACTCTC+TGG | 0.511639 | 4_2:+56266917 | None:intergenic |
| GAACATCGAACCAGCTCCTA+AGG | 0.511927 | 4_2:-56270023 | Msa0608910:CDS |
| CTGCAGTTCAGGCTTTATCT+GGG | 0.514039 | 4_2:-56267862 | Msa0608910:CDS |
| CATGGGTGGAAGCATACATA+TGG | 0.514364 | 4_2:-56267948 | Msa0608910:CDS |
| TGTTATCATGACAGTATGGC+TGG | 0.514770 | 4_2:-56265397 | Msa0608910:intron |
| CTCAACCGGAGCTCCGTCAC+CGG | 0.515163 | 4_2:-56270073 | Msa0608910:CDS |
| CATAACATTTGGAGAGATGC+TGG | 0.515488 | 4_2:-56267609 | Msa0608910:CDS |
| TACGGGCAACGTTGGATATG+TGG | 0.515504 | 4_2:-56265368 | Msa0608910:CDS |
| CATATGTATGCTTCCACCCA+TGG | 0.520422 | 4_2:+56267949 | None:intergenic |
| AGGATTGGATCCTTAGGAGC+TGG | 0.523663 | 4_2:+56270013 | None:intergenic |
| TCATTTCCCTTTGTTTGACA+TGG | 0.525399 | 4_2:-56267061 | Msa0608910:CDS |
| GGTTCAAGAATCACTGAAGC+TGG | 0.525800 | 4_2:-56267927 | Msa0608910:CDS |
| ATAGAGATGTAAAAGCCATC+AGG | 0.526430 | 4_2:-56267008 | Msa0608910:CDS |
| AGTCCAAACAAAGTTAATGT+TGG | 0.529361 | 4_2:-56269959 | Msa0608910:CDS |
| GAGGGAGCTGAATAAAAGTT+GGG | 0.530751 | 4_2:-56265239 | Msa0608910:three_prime_UTR |
| AGCAGGGAGTATCTTCCCAT+GGG | 0.532326 | 4_2:-56267965 | Msa0608910:intron |
| AAGAGGTGGATTGCTGTACA+TGG | 0.536615 | 4_2:+56266545 | None:intergenic |
| AGCAGAAAGAAAGAACCGTC+TGG | 0.539208 | 4_2:+56267259 | None:intergenic |
| TGAGGTATTTGTCGTTCCAA+AGG | 0.545379 | 4_2:+56265277 | None:intergenic |
| ATCCAGACTTGAAGAAGTTG+TGG | 0.545968 | 4_2:-56266488 | Msa0608910:CDS |
| CGAATCGCAAATGAAACAAA+GGG | 0.547414 | 4_2:+56265191 | None:intergenic |
| TCACCCTGAATCTAAAGGGT+TGG | 0.547557 | 4_2:-56267559 | Msa0608910:CDS |
| ATCTGGGGTCTCCATTGCCA+TGG | 0.550492 | 4_2:-56265867 | Msa0608910:CDS |
| GAGAAGATTGCGAATCGCCA+TGG | 0.553263 | 4_2:+56270108 | None:intergenic |
| GGACTGTATGGCCAGAGAGT+TGG | 0.555960 | 4_2:-56266928 | Msa0608910:CDS |
| GGTATGCCATGTCAAACAAA+GGG | 0.556105 | 4_2:+56267055 | None:intergenic |
| AGAGATCTCTTCTCAAATGA+AGG | 0.556653 | 4_2:-56267182 | Msa0608910:intron |
| CTCCAATAATTCTACTTCTG+AGG | 0.561476 | 4_2:+56265259 | None:intergenic |
| TTGGCATGTTCTGCTACAGC+GGG | 0.561910 | 4_2:-56265589 | Msa0608910:CDS |
| GATTTCCACTAGCAAAACCT+TGG | 0.563864 | 4_2:+56267034 | None:intergenic |
| CTAACACATTCAAGAACCAC+AGG | 0.564027 | 4_2:+56269601 | None:intergenic |
| AGTATGGCTGGTCTTAATAC+GGG | 0.570434 | 4_2:-56265385 | Msa0608910:CDS |
| TCGAATCGCAAATGAAACAA+AGG | 0.571062 | 4_2:+56265190 | None:intergenic |
| GCCAGAGAGTTGGATGCCTT+AGG | 0.572080 | 4_2:-56266918 | Msa0608910:intron |
| TCTGAAGGATCTACTCCAGT+AGG | 0.572848 | 4_2:+56267217 | None:intergenic |
| GGTCTTAATACGGGCAACGT+TGG | 0.573230 | 4_2:-56265376 | Msa0608910:CDS |
| CTCAGAAGTAGAATTATTGG+AGG | 0.576823 | 4_2:-56265258 | Msa0608910:three_prime_UTR |
| TGGTATGCCATGTCAAACAA+AGG | 0.578691 | 4_2:+56267054 | None:intergenic |
| GTTATGTGATTCCATGGCAA+TGG | 0.584912 | 4_2:+56265856 | None:intergenic |
| TAAAACAGAATGTGTTCACT+AGG | 0.590872 | 4_2:+56270159 | None:intergenic |
| GCTCCTAAGGATCCAATCCT+CGG | 0.593427 | 4_2:-56270010 | Msa0608910:CDS |
| TAGATTCAGGGTGATAGTAA+CGG | 0.595480 | 4_2:+56267568 | None:intergenic |
| CATGAATCTAGCTCCGGTGA+CGG | 0.597404 | 4_2:+56270060 | None:intergenic |
| TCTATATACCAGTTCCCACC+TGG | 0.597915 | 4_2:-56267781 | Msa0608910:CDS |
| TTGAGACTAATGATTAATGA+GGG | 0.598034 | 4_2:-56264995 | Msa0608910:three_prime_UTR |
| TGAAGACATGAATCTAGCTC+CGG | 0.599733 | 4_2:+56270054 | None:intergenic |
| CATCTCTCCAAATGTTATGG+TGG | 0.599838 | 4_2:+56267613 | None:intergenic |
| TGATTGGTTATGTGATTCCA+TGG | 0.602248 | 4_2:+56265850 | None:intergenic |
| GTTGTGGCTTAAAGAAGTCA+AGG | 0.603954 | 4_2:-56266472 | Msa0608910:intron |
| ATTGGCATGTTCTGCTACAG+CGG | 0.606237 | 4_2:-56265590 | Msa0608910:CDS |
| TAGATCCTTCAGAAGAACAA+TGG | 0.608072 | 4_2:-56267207 | Msa0608910:CDS |
| ATATGTATGCTTCCACCCAT+GGG | 0.618917 | 4_2:+56267950 | None:intergenic |
| GGCGCATATCGGGATGACAA+TGG | 0.620903 | 4_2:-56269628 | Msa0608910:CDS |
| TTGTTTGACATGGCATACCA+AGG | 0.620915 | 4_2:-56267051 | Msa0608910:CDS |
| ACGACAAGTGCTCCATGAAG+AGG | 0.624499 | 4_2:+56266528 | None:intergenic |
| AGATGATTCTGAGTTCATCA+AGG | 0.634967 | 4_2:-56267897 | Msa0608910:CDS |
| ACAAGTGCTCCATGAAGAGG+TGG | 0.644744 | 4_2:+56266531 | None:intergenic |
| GCGAATCGCCATGGAAACAG+AGG | 0.646344 | 4_2:+56270117 | None:intergenic |
| GAATACTGACTTGGACCAGG+TGG | 0.647698 | 4_2:+56267766 | None:intergenic |
| TAGTTCTCATTCCAATGATG+CGG | 0.649874 | 4_2:+56265911 | None:intergenic |
| TCAGAAGTAGAATTATTGGA+GGG | 0.651730 | 4_2:-56265257 | Msa0608910:three_prime_UTR |
| ATTGAATACTGACTTGGACC+AGG | 0.652138 | 4_2:+56267763 | None:intergenic |
| AGGGAGTATCTTCCCATGGG+TGG | 0.652799 | 4_2:-56267962 | Msa0608910:CDS |
| AATACTGACTTGGACCAGGT+GGG | 0.664893 | 4_2:+56267767 | None:intergenic |
| GCGATTCGCAATCTTCTCAA+CGG | 0.664921 | 4_2:-56270103 | Msa0608910:CDS |
| GGATGACAATGGAAAGCCTG+TGG | 0.668054 | 4_2:-56269617 | Msa0608910:CDS |
| CGAAAATGAGAAACAAGCCG+TGG | 0.673088 | 4_2:-56266601 | Msa0608910:CDS |
| GAGAGAATTTGGAAAATCTG+GGG | 0.676096 | 4_2:-56265882 | Msa0608910:CDS |
| AGACTAATGATTAATGAGGG+CGG | 0.684129 | 4_2:-56264992 | Msa0608910:three_prime_UTR |
| CTTACACAGAGTGCTCCAGA+CGG | 0.687623 | 4_2:-56267274 | Msa0608910:intron |
| GAAAAGCTTCGGTAACTCCG+AGG | 0.698605 | 4_2:+56269993 | None:intergenic |
| AATGTGTTAGAGAAGCAGAG+AGG | 0.730380 | 4_2:-56269588 | Msa0608910:CDS |
| AGAGGTGGATTGCTGTACAT+GGG | 0.738190 | 4_2:+56266546 | None:intergenic |
| TCTTCAAGTCTGGATCACCA+AGG | 0.760746 | 4_2:+56266496 | None:intergenic |
| TGTGGCTAACGCTATCAACG+AGG | 0.769825 | 4_2:-56265350 | Msa0608910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCAAGTTTTTTTTTTTTTTT+TGG | - | chr4_2:56265665-56265684 | Msa0608910:intron | 10.0% |
| !!! | TTTTTTTTTTTTTTGGTTAA+TGG | - | chr4_2:56265672-56265691 | Msa0608910:intron | 10.0% |
| !! | TAACAAAAAAAAATATTTGA+AGG | + | chr4_2:56265852-56265871 | None:intergenic | 10.0% |
| !!! | AAATAAATATTTGTTATTTG+TGG | + | chr4_2:56266070-56266089 | None:intergenic | 10.0% |
| !!! | AAATATATAATTTCTACTTT+TGG | - | chr4_2:56266137-56266156 | Msa0608910:intron | 10.0% |
| !!! | TTTTTTCAACTTTATTTAAT+GGG | - | chr4_2:56266210-56266229 | Msa0608910:intron | 10.0% |
| !! | AAATAAAACTTAATTTCTTA+TGG | - | chr4_2:56267065-56267084 | Msa0608910:CDS | 10.0% |
| !! | TATATTAATATAGAATAACA+TGG | + | chr4_2:56269132-56269151 | None:intergenic | 10.0% |
| !! | AATAGTTGTTGTAATAATAA+TGG | - | chr4_2:56265757-56265776 | Msa0608910:intron | 15.0% |
| !!! | GTTTTTTCAACTTTATTTAA+TGG | - | chr4_2:56266209-56266228 | Msa0608910:intron | 15.0% |
| !! | TTTCAAAGATAAATATTTGT+GGG | - | chr4_2:56266466-56266485 | Msa0608910:intron | 15.0% |
| !!! | AAACTTTGAAATATTTCTTT+TGG | + | chr4_2:56266634-56266653 | None:intergenic | 15.0% |
| !!! | TTAATATCATTTTAAAACAG+TGG | + | chr4_2:56267028-56267047 | None:intergenic | 15.0% |
| !!! | TTATACCATAAAGTTTTTTA+GGG | + | chr4_2:56268837-56268856 | None:intergenic | 15.0% |
| !!! | TTTATACCATAAAGTTTTTT+AGG | + | chr4_2:56268838-56268857 | None:intergenic | 15.0% |
| !! | TGATTTACTAAATTTAAGAA+TGG | + | chr4_2:56269180-56269199 | None:intergenic | 15.0% |
| !!! | CCAAATAATAATCATTTTTA+CGG | + | chr4_2:56270109-56270128 | None:intergenic | 15.0% |
| !!! | TTTGATTTGCAAATTATAAC+AGG | - | chr4_2:56265552-56265571 | Msa0608910:CDS | 20.0% |
| !!! | TTGATTTGCAAATTATAACA+GGG | - | chr4_2:56265553-56265572 | Msa0608910:CDS | 20.0% |
| !!! | TTAATGGTAACATTGATTTT+AGG | - | chr4_2:56265688-56265707 | Msa0608910:intron | 20.0% |
| !!! | AGTAATTTGTTTCTTTCTTT+AGG | - | chr4_2:56266392-56266411 | Msa0608910:intron | 20.0% |
| !! | GTTTCAAAGATAAATATTTG+TGG | - | chr4_2:56266465-56266484 | Msa0608910:intron | 20.0% |
| !! | TTCAAAGATAAATATTTGTG+GGG | - | chr4_2:56266467-56266486 | Msa0608910:intron | 20.0% |
| !! | GCAAACCAATAAAAATTTAA+GGG | + | chr4_2:56266500-56266519 | None:intergenic | 20.0% |
| !!! | TCTCACTTTTAGAAATATTT+TGG | + | chr4_2:56266725-56266744 | None:intergenic | 20.0% |
| !! | CTTTAATTAATCTACAAGAA+TGG | - | chr4_2:56266936-56266955 | Msa0608910:CDS | 20.0% |
| !! | ATTACAAGATCAATAATTCT+AGG | + | chr4_2:56267555-56267574 | None:intergenic | 20.0% |
| !! | AATAATTAAAGTGAGACTAA+TGG | + | chr4_2:56267864-56267883 | None:intergenic | 20.0% |
| !! | TAAGAAATAACCAATTTAAG+AGG | + | chr4_2:56267912-56267931 | None:intergenic | 20.0% |
| !! | TCAATCATATGCAAAAAATA+TGG | - | chr4_2:56268252-56268271 | Msa0608910:intron | 20.0% |
| !! | CAATCATATGCAAAAAATAT+GGG | - | chr4_2:56268253-56268272 | Msa0608910:intron | 20.0% |
| !! | CTAATACTAATCAATAAGAA+TGG | + | chr4_2:56268318-56268337 | None:intergenic | 20.0% |
| !!! | CATTCTTATTGATTAGTATT+AGG | - | chr4_2:56268316-56268335 | Msa0608910:intron | 20.0% |
| !!! | TTTTTCCCTAAAAAACTTTA+TGG | - | chr4_2:56268829-56268848 | Msa0608910:intron | 20.0% |
| !! | TGGATGAATTTCATTTATTA+TGG | + | chr4_2:56268994-56269013 | None:intergenic | 20.0% |
| !! | AATATATAAGAAAAAGTCTG+AGG | + | chr4_2:56269037-56269056 | None:intergenic | 20.0% |
| !! | TGTCTTCTTAAATTATCATT+TGG | + | chr4_2:56269157-56269176 | None:intergenic | 20.0% |
| !! | GTTGCATAATTGAATAATTT+AGG | + | chr4_2:56269890-56269909 | None:intergenic | 20.0% |
| !! | CCGTAAAAATGATTATTATT+TGG | - | chr4_2:56270106-56270125 | Msa0608910:CDS | 20.0% |
| !!! | TACAGTTACAAAGTTAGTTT+TGG | - | chr4_2:56265018-56265037 | Msa0608910:three_prime_UTR | 25.0% |
| ! | AGCATCTAACTTTAGTTAAA+AGG | - | chr4_2:56265980-56265999 | Msa0608910:intron | 25.0% |
| ! | ATTTGTGGAATTCTTAACAT+TGG | + | chr4_2:56266055-56266074 | None:intergenic | 25.0% |
| !! | TTTCTTTCTTTAGGTGTTTT+GGG | - | chr4_2:56266401-56266420 | Msa0608910:intron | 25.0% |
| ! | CAATAAAAATTTAAGGGATG+CGG | + | chr4_2:56266494-56266513 | None:intergenic | 25.0% |
| ! | CGCAAACCAATAAAAATTTA+AGG | + | chr4_2:56266501-56266520 | None:intergenic | 25.0% |
| !!! | TAATTGGTTTTGTAGAATGT+GGG | - | chr4_2:56266592-56266611 | Msa0608910:CDS | 25.0% |
| ! | CTTTCTGTTAGAAAAAAGTA+CGG | - | chr4_2:56266683-56266702 | Msa0608910:intron | 25.0% |
| !! | AAAAGTACGGATAATTAATC+AGG | - | chr4_2:56266696-56266715 | Msa0608910:intron | 25.0% |
| ! | AAATCAATGGCAGTATTTAA+AGG | + | chr4_2:56267474-56267493 | None:intergenic | 25.0% |
| ! | TTTGATATTTCGTAGATATC+TGG | - | chr4_2:56267529-56267548 | Msa0608910:intron | 25.0% |
| ! | CATGTTAAAAGATAGAGTTA+TGG | + | chr4_2:56268413-56268432 | None:intergenic | 25.0% |
| !!! | TTTTTTAGGGAAAAAAGCAA+AGG | + | chr4_2:56268824-56268843 | None:intergenic | 25.0% |
| ! | CAATGCTCAATTAACATAAT+TGG | - | chr4_2:56269072-56269091 | Msa0608910:intron | 25.0% |
| ! | AGAAAATGAACTTACATAGA+TGG | - | chr4_2:56269246-56269265 | Msa0608910:intron | 25.0% |
| ! | ACCATAAAAATAAGAGAGAA+GGG | + | chr4_2:56269457-56269476 | None:intergenic | 25.0% |
| ! | AACCATAAAAATAAGAGAGA+AGG | + | chr4_2:56269458-56269477 | None:intergenic | 25.0% |
| !!! | CTCTTATTTTTATGGTTACT+TGG | - | chr4_2:56269461-56269480 | Msa0608910:intron | 25.0% |
| !! | CAAAGTGTTAAAAACTTAGT+TGG | - | chr4_2:56269551-56269570 | Msa0608910:intron | 25.0% |
| ! | AACTCATAGTATAAGAGAAA+TGG | + | chr4_2:56269745-56269764 | None:intergenic | 25.0% |
| ! | TATATGTTATCATGACAGTA+TGG | - | chr4_2:56269801-56269820 | Msa0608910:intron | 25.0% |
| ! | TTAGTCTCAATCAACTTATA+AGG | + | chr4_2:56270197-56270216 | None:intergenic | 25.0% |
| ! | ATTGAGACTAATGATTAATG+AGG | - | chr4_2:56270206-56270225 | Msa0608910:five_prime_UTR | 25.0% |
| ! | TTGAGACTAATGATTAATGA+GGG | - | chr4_2:56270207-56270226 | Msa0608910:five_prime_UTR | 25.0% |
| TAAAACAGAATGTGTTCACT+AGG | + | chr4_2:56265046-56265065 | None:intergenic | 30.0% | |
| AGTCCAAACAAAGTTAATGT+TGG | - | chr4_2:56265243-56265262 | Msa0608910:three_prime_UTR | 30.0% | |
| ACTCCAACATTAACTTTGTT+TGG | + | chr4_2:56265249-56265268 | None:intergenic | 30.0% | |
| AAAACTTGACTCACATGAAT+TGG | + | chr4_2:56265654-56265673 | None:intergenic | 30.0% | |
| CGTACATAGAAACTTTAGTT+GGG | - | chr4_2:56265957-56265976 | Msa0608910:intron | 30.0% | |
| ACATTGGACAAATGTTAACA+TGG | + | chr4_2:56266039-56266058 | None:intergenic | 30.0% | |
| !!! | TTTCATGTGCCATTTTTTTG+TGG | - | chr4_2:56266244-56266263 | Msa0608910:intron | 30.0% |
| ! | GTTTCTTTCTTTAGGTGTTT+TGG | - | chr4_2:56266400-56266419 | Msa0608910:intron | 30.0% |
| ! | CGCATCCCTTAAATTTTTAT+TGG | - | chr4_2:56266492-56266511 | Msa0608910:CDS | 30.0% |
| ATGACCGAAATTCATAGTAA+CGG | - | chr4_2:56266567-56266586 | Msa0608910:CDS | 30.0% | |
| TACTCCGTTACTATGAATTT+CGG | + | chr4_2:56266574-56266593 | None:intergenic | 30.0% | |
| ! | ATTCATAGTAACGGAGTAAT+TGG | - | chr4_2:56266576-56266595 | Msa0608910:CDS | 30.0% |
| !!! | GTAATTGGTTTTGTAGAATG+TGG | - | chr4_2:56266591-56266610 | Msa0608910:CDS | 30.0% |
| !!! | CGTACTTTTTTCTAACAGAA+AGG | + | chr4_2:56266685-56266704 | None:intergenic | 30.0% |
| TCTAAAAGTGAGAAGAAAAC+TGG | - | chr4_2:56266732-56266751 | Msa0608910:intron | 30.0% | |
| TTACAGCTTATAGCACAAAT+AGG | - | chr4_2:56266777-56266796 | Msa0608910:intron | 30.0% | |
| ! | TTTAAAACAGTGGCGATAAA+AGG | + | chr4_2:56267018-56267037 | None:intergenic | 30.0% |
| TTTCAGGAGAATGTTACTAA+GGG | + | chr4_2:56267154-56267173 | None:intergenic | 30.0% | |
| GTAGTGTAAAAAACTGTTTC+AGG | + | chr4_2:56267170-56267189 | None:intergenic | 30.0% | |
| ! | ATTTGGATTGAATACTGACT+TGG | + | chr4_2:56267448-56267467 | None:intergenic | 30.0% |
| GCAGTATTTAAAGGAAGATT+TGG | + | chr4_2:56267465-56267484 | None:intergenic | 30.0% | |
| TTCTGTAGACTCAAAATCAA+TGG | + | chr4_2:56267487-56267506 | None:intergenic | 30.0% | |
| TAGTAACGGTATGTCTTTAT+TGG | + | chr4_2:56267623-56267642 | None:intergenic | 30.0% | |
| ACTCTTCTTACCTCTTAAAT+TGG | - | chr4_2:56267899-56267918 | Msa0608910:CDS | 30.0% | |
| TCTTCTCAAATGAAGGTTAA+AGG | - | chr4_2:56268027-56268046 | Msa0608910:intron | 30.0% | |
| ATCATCAACAAAAATCCTGA+TGG | + | chr4_2:56268212-56268231 | None:intergenic | 30.0% | |
| !! | ATCAGGATTTTTGTTGATGA+TGG | - | chr4_2:56268211-56268230 | Msa0608910:intron | 30.0% |
| !! | GTTGATGATGGTCATTTATT+AGG | - | chr4_2:56268223-56268242 | Msa0608910:intron | 30.0% |
| AGTCATAAGTGTTATCTTTG+CGG | + | chr4_2:56268557-56268576 | None:intergenic | 30.0% | |
| GCATACTGCAGAATTATATA+TGG | + | chr4_2:56268863-56268882 | None:intergenic | 30.0% | |
| !!! | TGCAGTATGCTATTTTTCTA+AGG | - | chr4_2:56268873-56268892 | Msa0608910:intron | 30.0% |
| !!! | AGTATGCTATTTTTCTAAGG+TGG | - | chr4_2:56268876-56268895 | Msa0608910:intron | 30.0% |
| AATGAAATTCATCCAATCCT+AGG | - | chr4_2:56268999-56269018 | Msa0608910:intron | 30.0% | |
| GCACAGAAAATAAGAAAAAG+TGG | + | chr4_2:56269405-56269424 | None:intergenic | 30.0% | |
| CCATAAAAATAAGAGAGAAG+GGG | + | chr4_2:56269456-56269475 | None:intergenic | 30.0% | |
| CATATTTACATGACTCGTAA+TGG | - | chr4_2:56269675-56269694 | Msa0608910:intron | 30.0% | |
| TCTCTTATACTATGAGTTCT+TGG | - | chr4_2:56269747-56269766 | Msa0608910:intron | 30.0% | |
| ! | CATACCAAATTTTTGTCCTT+TGG | - | chr4_2:56269909-56269928 | Msa0608910:intron | 30.0% |
| TACCTCAGAAGTAGAATTAT+TGG | - | chr4_2:56269941-56269960 | Msa0608910:intron | 30.0% | |
| TCAGAAGTAGAATTATTGGA+GGG | - | chr4_2:56269945-56269964 | Msa0608910:intron | 30.0% | |
| TGAGAAGTAGATTGAATAAG+AGG | - | chr4_2:56270049-56270068 | Msa0608910:CDS | 30.0% | |
| TTTCATTTCCTCTGTTTCCA+TGG | - | chr4_2:56265077-56265096 | Msa0608910:three_prime_UTR | 35.0% | |
| AATTATAACAGGGCGCATAT+CGG | - | chr4_2:56265563-56265582 | Msa0608910:CDS | 35.0% | |
| GCGTACATAGAAACTTTAGT+TGG | - | chr4_2:56265956-56265975 | Msa0608910:intron | 35.0% | |
| ! | ACTTTTGGTATACCAACATG+TGG | - | chr4_2:56266152-56266171 | Msa0608910:intron | 35.0% |
| ACGTGATCACCACAAAAAAA+TGG | + | chr4_2:56266256-56266275 | None:intergenic | 35.0% | |
| !!! | AGTTTGCTTTTTTGGTACGT+TGG | - | chr4_2:56266289-56266308 | Msa0608910:intron | 35.0% |
| AAAAGCAGCAGCAATAAAAC+AGG | + | chr4_2:56266441-56266460 | None:intergenic | 35.0% | |
| !! | CATCTTCTTTCTAGCTAGTT+TGG | + | chr4_2:56266527-56266546 | None:intergenic | 35.0% |
| CTAGAAAGAAGATGCTTAGT+AGG | - | chr4_2:56266533-56266552 | Msa0608910:CDS | 35.0% | |
| AAGAAGATGCTTAGTAGGTT+AGG | - | chr4_2:56266538-56266557 | Msa0608910:CDS | 35.0% | |
| ATGCTTAGTAGGTTAGGTAT+TGG | - | chr4_2:56266544-56266563 | Msa0608910:CDS | 35.0% | |
| CTACAAGAATGGTATGAGAT+TGG | - | chr4_2:56266947-56266966 | Msa0608910:CDS | 35.0% | |
| AAGAATGGTATGAGATTGGA+CGG | - | chr4_2:56266951-56266970 | Msa0608910:CDS | 35.0% | |
| ACGGTTAAGATCAATTACTG+CGG | - | chr4_2:56266970-56266989 | Msa0608910:CDS | 35.0% | |
| !! | TATTAGAAGCTTGTTGACCA+AGG | + | chr4_2:56267127-56267146 | None:intergenic | 35.0% |
| GTTTCAGGAGAATGTTACTA+AGG | + | chr4_2:56267155-56267174 | None:intergenic | 35.0% | |
| AGATGATTCTGAGTTCATCA+AGG | - | chr4_2:56267305-56267324 | Msa0608910:intron | 35.0% | |
| GGTATATAGATTTGGGTGTT+GGG | + | chr4_2:56267411-56267430 | None:intergenic | 35.0% | |
| TGGTATATAGATTTGGGTGT+TGG | + | chr4_2:56267412-56267431 | None:intergenic | 35.0% | |
| GGGAACTGGTATATAGATTT+GGG | + | chr4_2:56267418-56267437 | None:intergenic | 35.0% | |
| TGGGAACTGGTATATAGATT+TGG | + | chr4_2:56267419-56267438 | None:intergenic | 35.0% | |
| ATTACAGCCACCATAACATT+TGG | - | chr4_2:56267582-56267601 | Msa0608910:CDS | 35.0% | |
| TAGATTCAGGGTGATAGTAA+CGG | + | chr4_2:56267637-56267656 | None:intergenic | 35.0% | |
| TACTATCACCCTGAATCTAA+AGG | - | chr4_2:56267638-56267657 | Msa0608910:intron | 35.0% | |
| ACTATCACCCTGAATCTAAA+GGG | - | chr4_2:56267639-56267658 | Msa0608910:intron | 35.0% | |
| AATCCAACCCTTTAGATTCA+GGG | + | chr4_2:56267649-56267668 | None:intergenic | 35.0% | |
| AAATCCAACCCTTTAGATTC+AGG | + | chr4_2:56267650-56267669 | None:intergenic | 35.0% | |
| ! | TCTAAAGGGTTGGATTTTTC+TGG | - | chr4_2:56267653-56267672 | Msa0608910:intron | 35.0% |
| GAGTCATGTATAAAGTGTGT+CGG | + | chr4_2:56267726-56267745 | None:intergenic | 35.0% | |
| !! | GCTGTGTTACTATCTACTTT+TGG | - | chr4_2:56267749-56267768 | Msa0608910:intron | 35.0% |
| !! | CTATCTACTTTTGGTCTATG+AGG | - | chr4_2:56267758-56267777 | Msa0608910:intron | 35.0% |
| AGTTTGACATTGTAACCTCT+AGG | - | chr4_2:56267799-56267818 | Msa0608910:CDS | 35.0% | |
| GTTTGACATTGTAACCTCTA+GGG | - | chr4_2:56267800-56267819 | Msa0608910:CDS | 35.0% | |
| ! | ATTTTACAACCGTCTTTGAC+GGG | + | chr4_2:56267839-56267858 | None:intergenic | 35.0% |
| ! | CATTTTACAACCGTCTTTGA+CGG | + | chr4_2:56267840-56267859 | None:intergenic | 35.0% |
| TAGATCCTTCAGAAGAACAA+TGG | - | chr4_2:56267995-56268014 | Msa0608910:intron | 35.0% | |
| AGAGATCTCTTCTCAAATGA+AGG | - | chr4_2:56268020-56268039 | Msa0608910:intron | 35.0% | |
| TCATTGCTATGATTGTTTGC+AGG | - | chr4_2:56268111-56268130 | Msa0608910:intron | 35.0% | |
| TATGATTGTTTGCAGGCTAA+AGG | - | chr4_2:56268118-56268137 | Msa0608910:intron | 35.0% | |
| ! | TCATTTCCCTTTGTTTGACA+TGG | - | chr4_2:56268141-56268160 | Msa0608910:intron | 35.0% |
| ! | ATGGCTTTTACATCTCTATC+TGG | + | chr4_2:56268193-56268212 | None:intergenic | 35.0% |
| ATAGAGATGTAAAAGCCATC+AGG | - | chr4_2:56268194-56268213 | Msa0608910:intron | 35.0% | |
| GCAAAAAATATGGGACTGTA+TGG | - | chr4_2:56268262-56268281 | Msa0608910:intron | 35.0% | |
| AAGAATGGTCTACTTACCTA+AGG | + | chr4_2:56268303-56268322 | None:intergenic | 35.0% | |
| TTAGTATTAGGCCAAAGAGT+TGG | - | chr4_2:56268328-56268347 | Msa0608910:intron | 35.0% | |
| !! | CAATTGACTTTTTACAGCCA+CGG | + | chr4_2:56268621-56268640 | None:intergenic | 35.0% |
| ! | GGGGAGTAAAACTTTTATAG+AGG | + | chr4_2:56268790-56268809 | None:intergenic | 35.0% |
| !!! | GCTATTTTTCTAAGGTGGAA+TGG | - | chr4_2:56268881-56268900 | Msa0608910:intron | 35.0% |
| CTGTTAATCATTAGTGACTG+AGG | - | chr4_2:56268927-56268946 | Msa0608910:intron | 35.0% | |
| TCAAAAAGTAAGCCTAGGAT+TGG | + | chr4_2:56269014-56269033 | None:intergenic | 35.0% | |
| GCATGAATAAGTTGTAGCAA+CGG | - | chr4_2:56269221-56269240 | Msa0608910:intron | 35.0% | |
| TACATAGATGGCTTCTTTAC+AGG | - | chr4_2:56269258-56269277 | Msa0608910:intron | 35.0% | |
| TAGTTCTCATTCCAATGATG+CGG | + | chr4_2:56269294-56269313 | None:intergenic | 35.0% | |
| AACTACACTACGAGAGAATT+TGG | - | chr4_2:56269309-56269328 | Msa0608910:intron | 35.0% | |
| ACGAGAGAATTTGGAAAATC+TGG | - | chr4_2:56269318-56269337 | Msa0608910:intron | 35.0% | |
| CGAGAGAATTTGGAAAATCT+GGG | - | chr4_2:56269319-56269338 | Msa0608910:intron | 35.0% | |
| GAGAGAATTTGGAAAATCTG+GGG | - | chr4_2:56269320-56269339 | Msa0608910:intron | 35.0% | |
| ! | TGATTGGTTATGTGATTCCA+TGG | + | chr4_2:56269355-56269374 | None:intergenic | 35.0% |
| ATGGAATCACATAACCAATC+AGG | - | chr4_2:56269354-56269373 | Msa0608910:intron | 35.0% | |
| !!! | CCCCTTCTCTCTTATTTTTA+TGG | - | chr4_2:56269453-56269472 | Msa0608910:intron | 35.0% |
| CTGTTACTATTTGTGCAGAT+TGG | - | chr4_2:56269594-56269613 | Msa0608910:CDS | 35.0% | |
| ATACTATGAGTTCTTGGAGA+TGG | - | chr4_2:56269753-56269772 | Msa0608910:intron | 35.0% | |
| TACTATGAGTTCTTGGAGAT+GGG | - | chr4_2:56269754-56269773 | Msa0608910:intron | 35.0% | |
| CGTTCCAAAGGACAAAAATT+TGG | + | chr4_2:56269916-56269935 | None:intergenic | 35.0% | |
| CTCCAATAATTCTACTTCTG+AGG | + | chr4_2:56269946-56269965 | None:intergenic | 35.0% | |
| CTCAGAAGTAGAATTATTGG+AGG | - | chr4_2:56269944-56269963 | Msa0608910:intron | 35.0% | |
| GCAAATGAAACAAAGGGAAA+AGG | + | chr4_2:56270008-56270027 | None:intergenic | 35.0% | |
| CGAATCGCAAATGAAACAAA+GGG | + | chr4_2:56270014-56270033 | None:intergenic | 35.0% | |
| TCGAATCGCAAATGAAACAA+AGG | + | chr4_2:56270015-56270034 | None:intergenic | 35.0% | |
| ! | CGATTTTGTTGATGCTAGAA+CGG | - | chr4_2:56270142-56270161 | Msa0608910:five_prime_UTR | 35.0% |
| AGACTAATGATTAATGAGGG+CGG | - | chr4_2:56270210-56270229 | Msa0608910:five_prime_UTR | 35.0% | |
| TCAACGGACAATTTCTCAAC+CGG | - | chr4_2:56265115-56265134 | Msa0608910:three_prime_UTR | 40.0% | |
| ! | TGAAGACATGAATCTAGCTC+CGG | + | chr4_2:56265151-56265170 | None:intergenic | 40.0% |
| GAGCTAGATTCATGTCTTCA+TGG | - | chr4_2:56265151-56265170 | Msa0608910:three_prime_UTR | 40.0% | |
| GATTCATGTCTTCATGGTTC+AGG | - | chr4_2:56265157-56265176 | Msa0608910:three_prime_UTR | 40.0% | |
| ! | AGTTACCGAAGCTTTTCTTG+CGG | - | chr4_2:56265215-56265234 | Msa0608910:three_prime_UTR | 40.0% |
| ! | AGAACAGTGTTGCTCTGTTA+TGG | + | chr4_2:56265389-56265408 | None:intergenic | 40.0% |
| ATTATAACAGGGCGCATATC+GGG | - | chr4_2:56265564-56265583 | Msa0608910:CDS | 40.0% | |
| CTAACACATTCAAGAACCAC+AGG | + | chr4_2:56265604-56265623 | None:intergenic | 40.0% | |
| AATGTGTTAGAGAAGCAGAG+AGG | - | chr4_2:56265614-56265633 | Msa0608910:intron | 40.0% | |
| TCTATGTACGCACGAGATAA+AGG | + | chr4_2:56265947-56265966 | None:intergenic | 40.0% | |
| GTTAACTTAACGCCACATGT+TGG | + | chr4_2:56266167-56266186 | None:intergenic | 40.0% | |
| AAAAAAGCAAACTCAGCTGG+TGG | + | chr4_2:56266282-56266301 | None:intergenic | 40.0% | |
| !!! | ACCAGCTGAGTTTGCTTTTT+TGG | - | chr4_2:56266281-56266300 | Msa0608910:intron | 40.0% |
| ACCAAAAAAGCAAACTCAGC+TGG | + | chr4_2:56266285-56266304 | None:intergenic | 40.0% | |
| AGAACACTGCAACAACAAGT+AGG | + | chr4_2:56266328-56266347 | None:intergenic | 40.0% | |
| !!! | TAGGTGTTTTGGGATGATGT+AGG | - | chr4_2:56266411-56266430 | Msa0608910:intron | 40.0% |
| !!! | AGGTGTTTTGGGATGATGTA+GGG | - | chr4_2:56266412-56266431 | Msa0608910:intron | 40.0% |
| TTGTAGAATGTGGGACTTGT+TGG | - | chr4_2:56266601-56266620 | Msa0608910:CDS | 40.0% | |
| ! | GAGAAGAAAACTGGTCTGTT+TGG | - | chr4_2:56266741-56266760 | Msa0608910:intron | 40.0% |
| TGCGGCACATATTTAATGCT+CGG | - | chr4_2:56266988-56267007 | Msa0608910:CDS | 40.0% | |
| ACCGTTTCAAATGTTTGAGC+AGG | - | chr4_2:56267220-56267239 | Msa0608910:CDS | 40.0% | |
| CCCTGCTCAAACATTTGAAA+CGG | + | chr4_2:56267224-56267243 | None:intergenic | 40.0% | |
| CCGTTTCAAATGTTTGAGCA+GGG | - | chr4_2:56267221-56267240 | Msa0608910:CDS | 40.0% | |
| ATATGTATGCTTCCACCCAT+GGG | + | chr4_2:56267255-56267274 | None:intergenic | 40.0% | |
| TAAACGAATAGCTGCAGTTC+AGG | - | chr4_2:56267329-56267348 | Msa0608910:intron | 40.0% | |
| !! | ATTGAATACTGACTTGGACC+AGG | + | chr4_2:56267442-56267461 | None:intergenic | 40.0% |
| CATCTCTCCAAATGTTATGG+TGG | + | chr4_2:56267592-56267611 | None:intergenic | 40.0% | |
| CAGCATCTCTCCAAATGTTA+TGG | + | chr4_2:56267595-56267614 | None:intergenic | 40.0% | |
| CATAACATTTGGAGAGATGC+TGG | - | chr4_2:56267593-56267612 | Msa0608910:CDS | 40.0% | |
| ! | GTTGGATTTTTCTGGACTGA+TGG | - | chr4_2:56267661-56267680 | Msa0608910:intron | 40.0% |
| ! | TGGACTGATGGATGACATTA+AGG | - | chr4_2:56267673-56267692 | Msa0608910:intron | 40.0% |
| TCTCTCCATTGTTCTTCTGA+AGG | + | chr4_2:56268003-56268022 | None:intergenic | 40.0% | |
| GGTATGCCATGTCAAACAAA+GGG | + | chr4_2:56268150-56268169 | None:intergenic | 40.0% | |
| TGGTATGCCATGTCAAACAA+AGG | + | chr4_2:56268151-56268170 | None:intergenic | 40.0% | |
| TTGTTTGACATGGCATACCA+AGG | - | chr4_2:56268151-56268170 | Msa0608910:intron | 40.0% | |
| GATTTCCACTAGCAAAACCT+TGG | + | chr4_2:56268171-56268190 | None:intergenic | 40.0% | |
| ! | TATTAGGCCAAAGAGTTGGT+TGG | - | chr4_2:56268332-56268351 | Msa0608910:intron | 40.0% |
| AGTAGTTCCAACCAACTCTT+TGG | + | chr4_2:56268342-56268361 | None:intergenic | 40.0% | |
| !! | TTTAGTTTGAAGCCTTGAGC+TGG | - | chr4_2:56268495-56268514 | Msa0608910:intron | 40.0% |
| AAGTTCTGTAAACCAGCTCA+AGG | + | chr4_2:56268510-56268529 | None:intergenic | 40.0% | |
| ! | TGAGCTGGTTTACAGAACTT+TGG | - | chr4_2:56268510-56268529 | Msa0608910:intron | 40.0% |
| ! | TTTTCGCAAAGTAAGCTGCA+AGG | + | chr4_2:56268587-56268606 | None:intergenic | 40.0% |
| ATCCAGACTTGAAGAAGTTG+TGG | - | chr4_2:56268714-56268733 | Msa0608910:intron | 40.0% | |
| GTTGTGGCTTAAAGAAGTCA+AGG | - | chr4_2:56268730-56268749 | Msa0608910:intron | 40.0% | |
| AAAAAAGCAAAGGCTGTGAG+AGG | + | chr4_2:56268814-56268833 | None:intergenic | 40.0% | |
| ATCATTAGTGACTGAGGCTA+TGG | - | chr4_2:56268933-56268952 | Msa0608910:intron | 40.0% | |
| TGAGGTCAAAAAGTAAGCCT+AGG | + | chr4_2:56269019-56269038 | None:intergenic | 40.0% | |
| GATGGCTTCTTTACAGGTTA+TGG | - | chr4_2:56269264-56269283 | Msa0608910:intron | 40.0% | |
| GTTATGTGATTCCATGGCAA+TGG | + | chr4_2:56269349-56269368 | None:intergenic | 40.0% | |
| TGCATTCAACTGAACCTGAT+TGG | + | chr4_2:56269371-56269390 | None:intergenic | 40.0% | |
| GTGCTTATTGTAGTTGCTTG+AGG | - | chr4_2:56269421-56269440 | Msa0608910:intron | 40.0% | |
| TACTTGGAGACCAAGTATCT+TGG | - | chr4_2:56269477-56269496 | Msa0608910:intron | 40.0% | |
| TGACTCGTAATGGTCGTATA+AGG | - | chr4_2:56269685-56269704 | Msa0608910:intron | 40.0% | |
| TGTTATCATGACAGTATGGC+TGG | - | chr4_2:56269805-56269824 | Msa0608910:intron | 40.0% | |
| !! | CAGTATGGCTGGTCTTAATA+CGG | - | chr4_2:56269816-56269835 | Msa0608910:intron | 40.0% |
| !! | AGTATGGCTGGTCTTAATAC+GGG | - | chr4_2:56269817-56269836 | Msa0608910:intron | 40.0% |
| ! | TGAGGTATTTGTCGTTCCAA+AGG | + | chr4_2:56269928-56269947 | None:intergenic | 40.0% |
| GAGGGAGCTGAATAAAAGTT+GGG | - | chr4_2:56269963-56269982 | Msa0608910:CDS | 40.0% | |
| GCGATTCGCAATCTTCTCAA+CGG | - | chr4_2:56265099-56265118 | Msa0608910:three_prime_UTR | 45.0% | |
| CTGATCCGCAAGAAAAGCTT+CGG | + | chr4_2:56265223-56265242 | None:intergenic | 45.0% | |
| TCATGATTCCTTGCTCTGTG+TGG | - | chr4_2:56266366-56266385 | Msa0608910:intron | 45.0% | |
| TTACTACACCACACAGAGCA+AGG | + | chr4_2:56266377-56266396 | None:intergenic | 45.0% | |
| CAAGGTAGGTCTGAATCTGA+TGG | + | chr4_2:56267109-56267128 | None:intergenic | 45.0% | |
| CATCAGATTCAGACCTACCT+TGG | - | chr4_2:56267107-56267126 | Msa0608910:intron | 45.0% | |
| !! | AGAAGCTTGTTGACCAAGGT+AGG | + | chr4_2:56267123-56267142 | None:intergenic | 45.0% |
| CATATGTATGCTTCCACCCA+TGG | + | chr4_2:56267256-56267275 | None:intergenic | 45.0% | |
| ! | CATGGGTGGAAGCATACATA+TGG | - | chr4_2:56267254-56267273 | Msa0608910:CDS | 45.0% |
| GGTTCAAGAATCACTGAAGC+TGG | - | chr4_2:56267275-56267294 | Msa0608910:intron | 45.0% | |
| GAATCACTGAAGCTGGCATA+TGG | - | chr4_2:56267282-56267301 | Msa0608910:intron | 45.0% | |
| ! | CTGCAGTTCAGGCTTTATCT+GGG | - | chr4_2:56267340-56267359 | Msa0608910:intron | 45.0% |
| TCTATATACCAGTTCCCACC+TGG | - | chr4_2:56267421-56267440 | Msa0608910:intron | 45.0% | |
| !! | AATACTGACTTGGACCAGGT+GGG | + | chr4_2:56267438-56267457 | None:intergenic | 45.0% |
| TCACCCTGAATCTAAAGGGT+TGG | - | chr4_2:56267643-56267662 | Msa0608910:intron | 45.0% | |
| ! | ATTGTAACCTCTAGGGACGA+AGG | - | chr4_2:56267807-56267826 | Msa0608910:CDS | 45.0% |
| AGGTCAAATCCCGTCAAAGA+CGG | - | chr4_2:56267827-56267846 | Msa0608910:CDS | 45.0% | |
| AGCAGAAAGAAAGAACCGTC+TGG | + | chr4_2:56267946-56267965 | None:intergenic | 45.0% | |
| TCTGAAGGATCTACTCCAGT+AGG | + | chr4_2:56267988-56268007 | None:intergenic | 45.0% | |
| ! | GCATACCAAGGTTTTGCTAG+TGG | - | chr4_2:56268163-56268182 | Msa0608910:intron | 45.0% |
| CGAAAATGAGAAACAAGCCG+TGG | - | chr4_2:56268601-56268620 | Msa0608910:intron | 45.0% | |
| !! | AGAGGTGGATTGCTGTACAT+GGG | + | chr4_2:56268659-56268678 | None:intergenic | 45.0% |
| !! | AAGAGGTGGATTGCTGTACA+TGG | + | chr4_2:56268660-56268679 | None:intergenic | 45.0% |
| TACAGCAATCCACCTCTTCA+TGG | - | chr4_2:56268662-56268681 | Msa0608910:intron | 45.0% | |
| ! | CTTGTCGTTTCAACTGTCCT+TGG | - | chr4_2:56268689-56268708 | Msa0608910:intron | 45.0% |
| TCTTCAAGTCTGGATCACCA+AGG | + | chr4_2:56268709-56268728 | None:intergenic | 45.0% | |
| AGCCACAACTTCTTCAAGTC+TGG | + | chr4_2:56268719-56268738 | None:intergenic | 45.0% | |
| TGGAGACCAAGTATCTTGGT+AGG | - | chr4_2:56269481-56269500 | Msa0608910:intron | 45.0% | |
| GGAGACCAAGTATCTTGGTA+GGG | - | chr4_2:56269482-56269501 | Msa0608910:intron | 45.0% | |
| GAGACCAAGTATCTTGGTAG+GGG | - | chr4_2:56269483-56269502 | Msa0608910:intron | 45.0% | |
| AAGTATCTTGGTAGGGGAGA+GGG | - | chr4_2:56269489-56269508 | Msa0608910:intron | 45.0% | |
| ATTGGCATGTTCTGCTACAG+CGG | - | chr4_2:56269612-56269631 | Msa0608910:CDS | 45.0% | |
| GTCAAACGATCAACCTGTTC+TGG | + | chr4_2:56269645-56269664 | None:intergenic | 45.0% | |
| GGAGGGAGCTGAATAAAAGT+TGG | - | chr4_2:56269962-56269981 | Msa0608910:CDS | 45.0% | |
| GAGAAGATTGCGAATCGCCA+TGG | + | chr4_2:56265097-56265116 | None:intergenic | 50.0% | |
| ! | CATGAATCTAGCTCCGGTGA+CGG | + | chr4_2:56265145-56265164 | None:intergenic | 50.0% |
| GAACATCGAACCAGCTCCTA+AGG | - | chr4_2:56265179-56265198 | Msa0608910:three_prime_UTR | 50.0% | |
| AGGATTGGATCCTTAGGAGC+TGG | + | chr4_2:56265192-56265211 | None:intergenic | 50.0% | |
| GCTCCTAAGGATCCAATCCT+CGG | - | chr4_2:56265192-56265211 | Msa0608910:three_prime_UTR | 50.0% | |
| ACTCCGAGGATTGGATCCTT+AGG | + | chr4_2:56265198-56265217 | None:intergenic | 50.0% | |
| GAAAAGCTTCGGTAACTCCG+AGG | + | chr4_2:56265212-56265231 | None:intergenic | 50.0% | |
| GGATGACAATGGAAAGCCTG+TGG | - | chr4_2:56265585-56265604 | Msa0608910:CDS | 50.0% | |
| GAAGCAGAGAGGAGAATTGC+AGG | - | chr4_2:56265625-56265644 | Msa0608910:intron | 50.0% | |
| !! | AGCAGGGAGTATCTTCCCAT+GGG | - | chr4_2:56267237-56267256 | Msa0608910:CDS | 50.0% |
| ! | GCTGCAGTTCAGGCTTTATC+TGG | - | chr4_2:56267339-56267358 | Msa0608910:intron | 50.0% |
| ! | GTTCAGGCTTTATCTGGGAC+TGG | - | chr4_2:56267345-56267364 | Msa0608910:intron | 50.0% |
| !! | GAATACTGACTTGGACCAGG+TGG | + | chr4_2:56267439-56267458 | None:intergenic | 50.0% |
| GATTTGACCTTCGTCCCTAG+AGG | + | chr4_2:56267817-56267836 | None:intergenic | 50.0% | |
| ! | CTTACACAGAGTGCTCCAGA+CGG | - | chr4_2:56267928-56267947 | Msa0608910:CDS | 50.0% |
| GCTTGTGCTCACAATCCTAC+TGG | - | chr4_2:56267970-56267989 | Msa0608910:intron | 50.0% | |
| ! | ACCTAAGGCATCCAACTCTC+TGG | + | chr4_2:56268288-56268307 | None:intergenic | 50.0% |
| TGGATTGCTGTACATGGGTC+TGG | + | chr4_2:56268654-56268673 | None:intergenic | 50.0% | |
| ACAAGTGCTCCATGAAGAGG+TGG | + | chr4_2:56268674-56268693 | None:intergenic | 50.0% | |
| ACGACAAGTGCTCCATGAAG+AGG | + | chr4_2:56268677-56268696 | None:intergenic | 50.0% | |
| AAGCAAAGGCTGTGAGAGGT+GGG | + | chr4_2:56268810-56268829 | None:intergenic | 50.0% | |
| AAAGCAAAGGCTGTGAGAGG+TGG | + | chr4_2:56268811-56268830 | None:intergenic | 50.0% | |
| GTTATGGCAGACCGCATCAT+TGG | - | chr4_2:56269280-56269299 | Msa0608910:intron | 50.0% | |
| CTCTCCCCTACCAAGATACT+TGG | + | chr4_2:56269490-56269509 | None:intergenic | 50.0% | |
| CAAGTATCTTGGTAGGGGAG+AGG | - | chr4_2:56269488-56269507 | Msa0608910:intron | 50.0% | |
| TTGGCATGTTCTGCTACAGC+GGG | - | chr4_2:56269613-56269632 | Msa0608910:CDS | 50.0% | |
| GGTCTTAATACGGGCAACGT+TGG | - | chr4_2:56269826-56269845 | Msa0608910:intron | 50.0% | |
| TACGGGCAACGTTGGATATG+TGG | - | chr4_2:56269834-56269853 | Msa0608910:intron | 50.0% | |
| TGTGGCTAACGCTATCAACG+AGG | - | chr4_2:56269852-56269871 | Msa0608910:intron | 50.0% | |
| GCGAATCGCCATGGAAACAG+AGG | + | chr4_2:56265088-56265107 | None:intergenic | 55.0% | |
| GCTTCGGTAACTCCGAGGAT+TGG | + | chr4_2:56265207-56265226 | None:intergenic | 55.0% | |
| GGCGCATATCGGGATGACAA+TGG | - | chr4_2:56265574-56265593 | Msa0608910:CDS | 55.0% | |
| !! | GAGCAGGGAGTATCTTCCCA+TGG | - | chr4_2:56267236-56267255 | Msa0608910:CDS | 55.0% |
| !! | AGGGAGTATCTTCCCATGGG+TGG | - | chr4_2:56267240-56267259 | Msa0608910:CDS | 55.0% |
| GGACTGTATGGCCAGAGAGT+TGG | - | chr4_2:56268274-56268293 | Msa0608910:intron | 55.0% | |
| GCCAGAGAGTTGGATGCCTT+AGG | - | chr4_2:56268284-56268303 | Msa0608910:intron | 55.0% | |
| AGCAAAGGCTGTGAGAGGTG+GGG | + | chr4_2:56268809-56268828 | None:intergenic | 55.0% | |
| ! | ATCTGGGGTCTCCATTGCCA+TGG | - | chr4_2:56269335-56269354 | Msa0608910:intron | 55.0% |
| GACTTGGACCAGGTGGGAAC+TGG | + | chr4_2:56267432-56267451 | None:intergenic | 60.0% | |
| CAGCGGGATGACACCAGAAC+AGG | - | chr4_2:56269629-56269648 | Msa0608910:CDS | 60.0% | |
| CTCAACCGGAGCTCCGTCAC+CGG | - | chr4_2:56265129-56265148 | Msa0608910:three_prime_UTR | 65.0% | |
| !! | TAGCTCCGGTGACGGAGCTC+CGG | + | chr4_2:56265137-56265156 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 56264970 | 56270254 | 56264970 | ID=Msa0608910;Name=Msa0608910 |
| chr4_2 | mRNA | 56264970 | 56270254 | 56264970 | ID=Msa0608910-mRNA-1;Parent=Msa0608910;Name=Msa0608910-mRNA-1;_AED=0.06;_eAED=0.06;_QI=126|1|1|1|1|1|10|363|424 |
| chr4_2 | exon | 56264970 | 56265405 | 56264970 | ID=Msa0608910-mRNA-1:exon:14444;Parent=Msa0608910-mRNA-1 |
| chr4_2 | exon | 56265518 | 56265612 | 56265518 | ID=Msa0608910-mRNA-1:exon:14443;Parent=Msa0608910-mRNA-1 |
| chr4_2 | exon | 56265849 | 56265944 | 56265849 | ID=Msa0608910-mRNA-1:exon:14442;Parent=Msa0608910-mRNA-1 |
| chr4_2 | exon | 56266473 | 56266632 | 56266473 | ID=Msa0608910-mRNA-1:exon:14441;Parent=Msa0608910-mRNA-1 |
| chr4_2 | exon | 56266919 | 56267091 | 56266919 | ID=Msa0608910-mRNA-1:exon:14440;Parent=Msa0608910-mRNA-1 |
| chr4_2 | exon | 56267183 | 56267287 | 56267183 | ID=Msa0608910-mRNA-1:exon:14439;Parent=Msa0608910-mRNA-1 |
| chr4_2 | exon | 56267530 | 56267635 | 56267530 | ID=Msa0608910-mRNA-1:exon:14438;Parent=Msa0608910-mRNA-1 |
| chr4_2 | exon | 56267776 | 56267982 | 56267776 | ID=Msa0608910-mRNA-1:exon:14437;Parent=Msa0608910-mRNA-1 |
| chr4_2 | exon | 56269565 | 56269650 | 56269565 | ID=Msa0608910-mRNA-1:exon:14436;Parent=Msa0608910-mRNA-1 |
| chr4_2 | exon | 56269955 | 56270254 | 56269955 | ID=Msa0608910-mRNA-1:exon:14435;Parent=Msa0608910-mRNA-1 |
| chr4_2 | five_prime_UTR | 56270129 | 56270254 | 56270129 | ID=Msa0608910-mRNA-1:five_prime_utr;Parent=Msa0608910-mRNA-1 |
| chr4_2 | CDS | 56269955 | 56270128 | 56269955 | ID=Msa0608910-mRNA-1:cds;Parent=Msa0608910-mRNA-1 |
| chr4_2 | CDS | 56269565 | 56269650 | 56269565 | ID=Msa0608910-mRNA-1:cds;Parent=Msa0608910-mRNA-1 |
| chr4_2 | CDS | 56267776 | 56267982 | 56267776 | ID=Msa0608910-mRNA-1:cds;Parent=Msa0608910-mRNA-1 |
| chr4_2 | CDS | 56267530 | 56267635 | 56267530 | ID=Msa0608910-mRNA-1:cds;Parent=Msa0608910-mRNA-1 |
| chr4_2 | CDS | 56267183 | 56267287 | 56267183 | ID=Msa0608910-mRNA-1:cds;Parent=Msa0608910-mRNA-1 |
| chr4_2 | CDS | 56266919 | 56267091 | 56266919 | ID=Msa0608910-mRNA-1:cds;Parent=Msa0608910-mRNA-1 |
| chr4_2 | CDS | 56266473 | 56266632 | 56266473 | ID=Msa0608910-mRNA-1:cds;Parent=Msa0608910-mRNA-1 |
| chr4_2 | CDS | 56265849 | 56265944 | 56265849 | ID=Msa0608910-mRNA-1:cds;Parent=Msa0608910-mRNA-1 |
| chr4_2 | CDS | 56265518 | 56265612 | 56265518 | ID=Msa0608910-mRNA-1:cds;Parent=Msa0608910-mRNA-1 |
| chr4_2 | CDS | 56265333 | 56265405 | 56265333 | ID=Msa0608910-mRNA-1:cds;Parent=Msa0608910-mRNA-1 |
| chr4_2 | three_prime_UTR | 56264970 | 56265332 | 56264970 | ID=Msa0608910-mRNA-1:three_prime_utr;Parent=Msa0608910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
