Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0555400 | XP_024638558.1 | 90.566 | 424 | 5 | 1 | 1 | 389 | 1 | 424 | 0.0 | 788 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0555400 | sp|P46643|AAT1_ARATH | 72.066 | 426 | 82 | 2 | 1 | 389 | 5 | 430 | 0.0 | 638 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0555400 | A0A0D2RUW3 | 80.879 | 387 | 74 | 0 | 1 | 387 | 1 | 387 | 0.0 | 683 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026660 | Msa0555400 | 0.801181 | 1.016424e-48 | -8.615850e-47 |
| Msa0090030 | Msa0555400 | 0.804113 | 2.524585e-49 | -8.615850e-47 |
| Msa0092170 | Msa0555400 | 0.803019 | 4.257270e-49 | -8.615850e-47 |
| Msa0145150 | Msa0555400 | 0.809279 | 2.046590e-50 | -8.615850e-47 |
| Msa0208000 | Msa0555400 | 0.804351 | 2.252155e-49 | -8.615850e-47 |
| Msa0430870 | Msa0555400 | 0.802580 | 5.244126e-49 | -8.615850e-47 |
| Msa0432070 | Msa0555400 | 0.814189 | 1.749119e-51 | -8.615850e-47 |
| Msa0265160 | Msa0555400 | 0.817233 | 3.667888e-52 | -8.615850e-47 |
| Msa0281360 | Msa0555400 | 0.807803 | 4.228279e-50 | -8.615850e-47 |
| Msa0321190 | Msa0555400 | 0.801581 | 8.416363e-49 | -8.615850e-47 |
| Msa0534410 | Msa0555400 | 0.810233 | 1.276432e-50 | -8.615850e-47 |
| Msa0555400 | Msa0608910 | 0.867858 | 1.003840e-65 | -8.615850e-47 |
| Msa0555400 | Msa0628290 | 0.832657 | 8.339598e-56 | -8.615850e-47 |
| Msa0555400 | Msa0630950 | 0.802038 | 6.780499e-49 | -8.615850e-47 |
| Msa0555400 | Msa0649410 | 0.891575 | 3.506288e-74 | -8.615850e-47 |
| Msa0555400 | Msa0649450 | 0.873826 | 1.087801e-67 | -8.615850e-47 |
| Msa0555400 | Msa0792090 | 0.813132 | 2.988125e-51 | -8.615850e-47 |
| Msa0555400 | Msa0993530 | 0.800701 | 1.273817e-48 | -8.615850e-47 |
| Msa0555400 | Msa1009780 | 0.803920 | 2.768805e-49 | -8.615850e-47 |
| Msa0555400 | Msa1036740 | 0.800568 | 1.356230e-48 | -8.615850e-47 |
| Msa0555400 | Msa1172130 | -0.813602 | 2.356037e-51 | -8.615850e-47 |
| Msa0555400 | Msa1267840 | 0.817315 | 3.515583e-52 | -8.615850e-47 |
| Msa0555400 | Msa1280560 | 0.802615 | 5.156961e-49 | -8.615850e-47 |
| Msa0555400 | Msa1298550 | -0.801459 | 8.914316e-49 | -8.615850e-47 |
| Msa0555400 | Msa1338250 | 0.804186 | 2.437091e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0555400 | MtrunA17_Chr4g0041371 | 90.566 | 424 | 5 | 1 | 1 | 389 | 1 | 424 | 0.0 | 788 |
| Msa0555400 | MtrunA17_Chr4g0041351 | 92.000 | 200 | 16 | 0 | 190 | 389 | 39 | 238 | 6.21e-138 | 393 |
| Msa0555400 | MtrunA17_Chr3g0139821 | 45.980 | 398 | 178 | 2 | 25 | 385 | 56 | 453 | 4.51e-121 | 358 |
| Msa0555400 | MtrunA17_Chr1g0149721 | 43.038 | 395 | 188 | 3 | 25 | 382 | 63 | 457 | 6.59e-109 | 327 |
| Msa0555400 | MtrunA17_Chr4g0041361 | 85.987 | 157 | 16 | 2 | 1 | 156 | 1 | 152 | 1.15e-92 | 275 |
| Msa0555400 | MtrunA17_Chr4g0005811 | 46.269 | 67 | 33 | 1 | 245 | 308 | 5 | 71 | 1.89e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0555400 | AT2G30970.1 | 72.066 | 426 | 82 | 2 | 1 | 389 | 5 | 430 | 0.0 | 638 |
| Msa0555400 | AT2G30970.2 | 72.066 | 426 | 82 | 2 | 1 | 389 | 5 | 430 | 0.0 | 638 |
| Msa0555400 | AT5G11520.1 | 46.517 | 402 | 178 | 2 | 25 | 389 | 47 | 448 | 1.19e-122 | 362 |
| Msa0555400 | AT5G19550.1 | 44.975 | 398 | 182 | 2 | 23 | 383 | 1 | 398 | 1.10e-120 | 355 |
| Msa0555400 | AT1G62800.1 | 42.857 | 399 | 193 | 1 | 23 | 386 | 1 | 399 | 9.47e-115 | 340 |
| Msa0555400 | AT1G62800.2 | 42.750 | 400 | 192 | 2 | 23 | 385 | 1 | 400 | 3.68e-113 | 337 |
| Msa0555400 | AT4G31990.1 | 41.063 | 414 | 206 | 4 | 6 | 382 | 33 | 445 | 5.77e-107 | 322 |
| Msa0555400 | AT4G31990.2 | 41.063 | 414 | 206 | 4 | 6 | 382 | 33 | 445 | 5.77e-107 | 322 |
| Msa0555400 | AT4G31990.3 | 41.063 | 414 | 206 | 4 | 6 | 382 | 33 | 445 | 1.25e-106 | 322 |
| Msa0555400 | AT4G31990.4 | 42.025 | 395 | 192 | 3 | 25 | 382 | 46 | 440 | 1.31e-106 | 321 |
| Msa0555400 | AT1G62800.3 | 41.888 | 339 | 160 | 2 | 23 | 324 | 1 | 339 | 2.82e-89 | 273 |
Find 129 sgRNAs with CRISPR-Local
Find 378 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGATGATGGTCATTTATT+AGG | 0.163800 | 4_1:-53402453 | Msa0555400:CDS |
| GCTGCAGTTCAGGCTTTATC+TGG | 0.203926 | 4_1:-53403337 | Msa0555400:CDS |
| AACTACACTACGAGAGAATT+TGG | 0.231543 | 4_1:-53401362 | Msa0555400:CDS |
| TACCTCAGAAGTAGAATTAT+TGG | 0.240798 | 4_1:-53400730 | Msa0555400:three_prime_UTR |
| ACTCCAACATTAACTTTGTT+TGG | 0.243943 | 4_1:+53406229 | None:intergenic |
| GTTGCATAATTGAATAATTT+AGG | 0.248563 | 4_1:+53400784 | None:intergenic |
| AAATCCAACCCTTTAGATTC+TGG | 0.257537 | 4_1:+53403029 | None:intergenic |
| TACAGTTACAAAGTTAGATT+TGG | 0.270790 | 4_1:-53406457 | Msa0555400:five_prime_UTR |
| TGGGAACTGGTATATAGATT+TGG | 0.284181 | 4_1:+53403260 | None:intergenic |
| CAATGGAAAACCTGTGGTTT+TGG | 0.289683 | 4_1:-53405883 | Msa0555400:CDS |
| TGGACTGATGGATGACATTA+AGG | 0.291323 | 4_1:-53403003 | Msa0555400:intron |
| ACGAGAGAATTTGGAAAATC+TGG | 0.306043 | 4_1:-53401353 | Msa0555400:CDS |
| GATTCATGTCTTCGTGGTTC+AGG | 0.309930 | 4_1:-53406318 | Msa0555400:CDS |
| TGAGAAGTAGATTGAATAAG+AGG | 0.318062 | 4_1:-53400622 | Msa0555400:three_prime_UTR |
| AGCCACAACTTCTTCAAGTC+TGG | 0.343190 | 4_1:+53401955 | None:intergenic |
| TACAGCAATCCACCTCTTCA+TGG | 0.366324 | 4_1:-53402009 | Msa0555400:CDS |
| GAAGCAGAGAGGAGAATTGC+AGG | 0.369047 | 4_1:-53405849 | Msa0555400:CDS |
| AACAAAATCGTAACAATTCT+CGG | 0.370045 | 4_1:+53400542 | None:intergenic |
| AATCCAACCCTTTAGATTCT+GGG | 0.371907 | 4_1:+53403030 | None:intergenic |
| GTCAAACGATCAACCTGTTC+TGG | 0.382951 | 4_1:+53401029 | None:intergenic |
| TTAGTCTCGATCAACTTATA+AGG | 0.386122 | 4_1:+53400477 | None:intergenic |
| TGACTCGTAATGGTCGTATA+AGG | 0.390208 | 4_1:-53400986 | Msa0555400:intron |
| ATTACAGCCACCATAACATT+TGG | 0.393881 | 4_1:-53403094 | Msa0555400:intron |
| GGGAACTGGTATATAGATTT+GGG | 0.398341 | 4_1:+53403261 | None:intergenic |
| TAGTAACGGTATGTCTTTAT+AGG | 0.403283 | 4_1:+53403056 | None:intergenic |
| TAAACGAATAGCTGCAGTTC+AGG | 0.408353 | 4_1:-53403347 | Msa0555400:CDS |
| TATGCATCACTCACATGAAT+TGG | 0.412750 | 4_1:+53405823 | None:intergenic |
| TCAACGGACAATTTCTCAAC+CGG | 0.420413 | 4_1:-53406360 | Msa0555400:CDS |
| CATATTTACATGACTCGTAA+TGG | 0.427237 | 4_1:-53400996 | Msa0555400:CDS |
| CAGCATCTCTCCAAATGTTA+TGG | 0.427253 | 4_1:+53403084 | None:intergenic |
| ATATATAACAGGGTGCATAT+CGG | 0.432831 | 4_1:-53405911 | Msa0555400:intron |
| CTTGTCGTTTCAACTGTCCT+TGG | 0.436753 | 4_1:-53401982 | Msa0555400:CDS |
| TATATAACAGGGTGCATATC+GGG | 0.441288 | 4_1:-53405910 | Msa0555400:intron |
| GACTTCGACCAGGTGGGAAC+TGG | 0.442783 | 4_1:+53403247 | None:intergenic |
| CAGTATGGCTGGTCTTAATA+CGG | 0.443084 | 4_1:-53400855 | Msa0555400:CDS |
| CGAGAGAATTTGGAAAATCT+GGG | 0.454321 | 4_1:-53401352 | Msa0555400:CDS |
| GTTATGGCAGACCGCATCAT+TGG | 0.454392 | 4_1:-53401391 | Msa0555400:CDS |
| TGGTATATAGATTTGGGTGT+TGG | 0.456286 | 4_1:+53403267 | None:intergenic |
| TATGATTGTTTGCAGGCTAA+AGG | 0.462192 | 4_1:-53402558 | Msa0555400:intron |
| TGGATTGCTGTACATGGGTC+TGG | 0.465606 | 4_1:+53402020 | None:intergenic |
| TGCATTCAACTGAACCTGAT+TGG | 0.467234 | 4_1:+53401303 | None:intergenic |
| TTTCATTTCCTCTGTTTCCA+TGG | 0.471629 | 4_1:-53406398 | Msa0555400:exon |
| CAGCGGGATGACACCAGAAC+AGG | 0.474884 | 4_1:-53401042 | Msa0555400:CDS |
| GTTCAGGCTTTATCTGGGAC+TGG | 0.478849 | 4_1:-53403331 | Msa0555400:CDS |
| GCAAATGAAACAAGGGGAAA+AGG | 0.480133 | 4_1:+53400666 | None:intergenic |
| GGACGGAGCTGAATAAAAGT+TGG | 0.480734 | 4_1:-53400709 | Msa0555400:three_prime_UTR |
| GGTATATAGATTTGGGTGTT+GGG | 0.481546 | 4_1:+53403268 | None:intergenic |
| ACTATCACCCAGAATCTAAA+GGG | 0.487239 | 4_1:-53403037 | Msa0555400:CDS |
| ACTCCGAGGATTGGATCCTT+AGG | 0.493438 | 4_1:+53406280 | None:intergenic |
| ATGGAATCACATAACCAATC+AGG | 0.493504 | 4_1:-53401317 | Msa0555400:intron |
| TACTATCACCCAGAATCTAA+AGG | 0.498874 | 4_1:-53403038 | Msa0555400:CDS |
| GAATCACTGAAGCTGGCCTA+TGG | 0.500478 | 4_1:-53403394 | Msa0555400:CDS |
| TAGCTCCGGTGACGGAGCTC+CGG | 0.500615 | 4_1:+53406341 | None:intergenic |
| GCTTCGGTAACTCCGAGGAT+TGG | 0.504812 | 4_1:+53406271 | None:intergenic |
| GAGCAGGGAGTATCTTCCCA+TGG | 0.505060 | 4_1:-53403440 | Msa0555400:intron |
| CTGATCCGCAAGAAAAGCTT+CGG | 0.505274 | 4_1:+53406255 | None:intergenic |
| ACCTAAGGCATCCAACTCTC+TGG | 0.511639 | 4_1:+53402391 | None:intergenic |
| GAACATCGAACCAGCTCCTA+AGG | 0.511927 | 4_1:-53406296 | Msa0555400:CDS |
| GACGGAGCTGAATAAAAGTT+GGG | 0.513999 | 4_1:-53400708 | Msa0555400:three_prime_UTR |
| CTGCAGTTCAGGCTTTATCT+GGG | 0.514039 | 4_1:-53403336 | Msa0555400:CDS |
| CATGGGTGGAAGCATACATA+TGG | 0.514364 | 4_1:-53403422 | Msa0555400:CDS |
| TGTTATCATGACAGTATGGC+TGG | 0.514770 | 4_1:-53400866 | Msa0555400:intron |
| CTCAACCGGAGCTCCGTCAC+CGG | 0.515163 | 4_1:-53406346 | Msa0555400:CDS |
| CATAACATTTGGAGAGATGC+TGG | 0.515488 | 4_1:-53403083 | Msa0555400:CDS |
| TACGGGCAACGTTGGATATG+TGG | 0.515504 | 4_1:-53400837 | Msa0555400:CDS |
| CATATGTATGCTTCCACCCA+TGG | 0.520422 | 4_1:+53403423 | None:intergenic |
| GGTTCAAGAATCACTGAAGC+TGG | 0.523627 | 4_1:-53403401 | Msa0555400:CDS |
| AGGATTGGATCCTTAGGAGC+TGG | 0.523663 | 4_1:+53406286 | None:intergenic |
| TCATTTCCCTTTGTTTGACA+TGG | 0.525399 | 4_1:-53402535 | Msa0555400:CDS |
| ATAGAGATGTAAAAGCCATC+AGG | 0.526430 | 4_1:-53402482 | Msa0555400:CDS |
| GAGCTAGATTCATGTCTTCG+TGG | 0.529355 | 4_1:-53406324 | Msa0555400:CDS |
| AGTCCAAACAAAGTTAATGT+TGG | 0.529361 | 4_1:-53406232 | Msa0555400:CDS |
| AGCAGGGAGTATCTTCCCAT+GGG | 0.532326 | 4_1:-53403439 | Msa0555400:intron |
| AAGAGGTGGATTGCTGTACA+TGG | 0.536615 | 4_1:+53402014 | None:intergenic |
| ATCGAGACTAATGATTAATG+AGG | 0.539873 | 4_1:-53400465 | Msa0555400:three_prime_UTR |
| CTAACACATTCCAAAACCAC+AGG | 0.541703 | 4_1:+53405873 | None:intergenic |
| ATCCAGACTTGAAGAAGTTG+TGG | 0.545968 | 4_1:-53401957 | Msa0555400:CDS |
| TGAGGTATTTGTCATTCCAA+AGG | 0.547822 | 4_1:+53400746 | None:intergenic |
| ATCTGGGGTCTCCATTGCCA+TGG | 0.550492 | 4_1:-53401336 | Msa0555400:CDS |
| GAGAAGATTGCGAATCGCCA+TGG | 0.553263 | 4_1:+53406381 | None:intergenic |
| TCACCCAGAATCTAAAGGGT+TGG | 0.553380 | 4_1:-53403033 | Msa0555400:CDS |
| GGACTGTATGGCCAGAGAGT+TGG | 0.555960 | 4_1:-53402402 | Msa0555400:CDS |
| GGTATGCCATGTCAAACAAA+GGG | 0.556105 | 4_1:+53402529 | None:intergenic |
| TTGGCATGTTCTGCTACAGC+GGG | 0.561910 | 4_1:-53401058 | Msa0555400:CDS |
| GATTTCCACTAGCAAAACCT+TGG | 0.563864 | 4_1:+53402508 | None:intergenic |
| AGTATGGCTGGTCTTAATAC+GGG | 0.570434 | 4_1:-53400854 | Msa0555400:CDS |
| GCCAGAGAGTTGGATGCCTT+AGG | 0.572080 | 4_1:-53402392 | Msa0555400:intron |
| GGTCTTAATACGGGCAACGT+TGG | 0.573230 | 4_1:-53400845 | Msa0555400:CDS |
| TGGTATGCCATGTCAAACAA+AGG | 0.578691 | 4_1:+53402528 | None:intergenic |
| GTCCAATAATTCTACTTCTG+AGG | 0.581901 | 4_1:+53400728 | None:intergenic |
| GTTATGTGATTCCATGGCAA+TGG | 0.584912 | 4_1:+53401325 | None:intergenic |
| GAACTCAGAATCGTCTCCAT+AGG | 0.584996 | 4_1:+53403378 | None:intergenic |
| GTCGAATCGCAAATGAAACA+AGG | 0.586628 | 4_1:+53400658 | None:intergenic |
| TAAAACAGAATGTGTTCACT+AGG | 0.590872 | 4_1:+53406432 | None:intergenic |
| TAGATTCTGGGTGATAGTAA+CGG | 0.592997 | 4_1:+53403042 | None:intergenic |
| GCTCCTAAGGATCCAATCCT+CGG | 0.593427 | 4_1:-53406283 | Msa0555400:CDS |
| CATGAATCTAGCTCCGGTGA+CGG | 0.597404 | 4_1:+53406333 | None:intergenic |
| TCTATATACCAGTTCCCACC+TGG | 0.597915 | 4_1:-53403255 | Msa0555400:CDS |
| CATCTCTCCAAATGTTATGG+TGG | 0.599838 | 4_1:+53403087 | None:intergenic |
| TGATTGGTTATGTGATTCCA+TGG | 0.602248 | 4_1:+53401319 | None:intergenic |
| CGAAGACATGAATCTAGCTC+CGG | 0.602634 | 4_1:+53406327 | None:intergenic |
| TCGAATCGCAAATGAAACAA+GGG | 0.602786 | 4_1:+53400659 | None:intergenic |
| GTTGTGGCTTAAAGAAGTCA+AGG | 0.603954 | 4_1:-53401941 | Msa0555400:intron |
| ATTGGCATGTTCTGCTACAG+CGG | 0.606237 | 4_1:-53401059 | Msa0555400:CDS |
| ATATGTATGCTTCCACCCAT+GGG | 0.618917 | 4_1:+53403424 | None:intergenic |
| TTGTTTGACATGGCATACCA+AGG | 0.620915 | 4_1:-53402525 | Msa0555400:CDS |
| ACGACAAGTGCTCCATGAAG+AGG | 0.624499 | 4_1:+53401997 | None:intergenic |
| GGTGCATATCGGGATGACAA+TGG | 0.624737 | 4_1:-53405900 | Msa0555400:CDS |
| AGACGATTCTGAGTTCATCA+AGG | 0.637406 | 4_1:-53403371 | Msa0555400:CDS |
| ATTGAATACTGACTTCGACC+AGG | 0.638726 | 4_1:+53403237 | None:intergenic |
| TCGAGACTAATGATTAATGA+GGG | 0.642824 | 4_1:-53400464 | Msa0555400:three_prime_UTR |
| ACAAGTGCTCCATGAAGAGG+TGG | 0.644744 | 4_1:+53402000 | None:intergenic |
| GCGAATCGCCATGGAAACAG+AGG | 0.646344 | 4_1:+53406390 | None:intergenic |
| TAGTTCTCATTCCAATGATG+CGG | 0.649874 | 4_1:+53401380 | None:intergenic |
| AGGGAGTATCTTCCCATGGG+TGG | 0.652799 | 4_1:-53403436 | Msa0555400:CDS |
| CGAATCGCAAATGAAACAAG+GGG | 0.656770 | 4_1:+53400660 | None:intergenic |
| GAATACTGACTTCGACCAGG+TGG | 0.660182 | 4_1:+53403240 | None:intergenic |
| AATACTGACTTCGACCAGGT+GGG | 0.664893 | 4_1:+53403241 | None:intergenic |
| GCGATTCGCAATCTTCTCAA+CGG | 0.664921 | 4_1:-53406376 | Msa0555400:CDS |
| AATGTGTTAGAGAAGCAGAG+AGG | 0.671144 | 4_1:-53405860 | Msa0555400:CDS |
| CGAAAATGAGAAACAAGCCG+TGG | 0.673088 | 4_1:-53402070 | Msa0555400:CDS |
| GAGAGAATTTGGAAAATCTG+GGG | 0.676096 | 4_1:-53401351 | Msa0555400:CDS |
| ATGAAATCGCTGTTGAAATG+CGG | 0.679047 | 4_1:+53403291 | None:intergenic |
| TCAGAAGTAGAATTATTGGA+CGG | 0.686077 | 4_1:-53400726 | Msa0555400:three_prime_UTR |
| GGATGACAATGGAAAACCTG+TGG | 0.688403 | 4_1:-53405889 | Msa0555400:CDS |
| GAAAAGCTTCGGTAACTCCG+AGG | 0.698605 | 4_1:+53406266 | None:intergenic |
| AGAGGTGGATTGCTGTACAT+GGG | 0.738190 | 4_1:+53402015 | None:intergenic |
| TCTTCAAGTCTGGATCACCA+AGG | 0.760746 | 4_1:+53401965 | None:intergenic |
| TGTGGCTAACGCTATCAACG+AGG | 0.769825 | 4_1:-53400819 | Msa0555400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATTAAAAAAAAAATGTT+AGG | - | chr4_1:53401165-53401184 | Msa0555400:intron | 10.0% |
| !!! | AAAGTAACATTTTTTTTAAT+CGG | + | chr4_1:53401602-53401621 | None:intergenic | 10.0% |
| !! | CATTAATTATATTTCTTAAT+CGG | - | chr4_1:53401742-53401761 | Msa0555400:intron | 10.0% |
| !!! | TATGATCTTTAATTTAAATA+TGG | - | chr4_1:53401860-53401879 | Msa0555400:intron | 10.0% |
| !!! | ATGATCTTTAATTTAAATAT+GGG | - | chr4_1:53401861-53401880 | Msa0555400:intron | 10.0% |
| !!! | TATGAAATATTTATTCTTTT+AGG | - | chr4_1:53402002-53402021 | Msa0555400:CDS | 10.0% |
| !! | AAATAAAACTTAATTTCTTA+TGG | - | chr4_1:53403330-53403349 | Msa0555400:CDS | 10.0% |
| !! | TATATTAATATAGAATAACA+TGG | + | chr4_1:53405402-53405421 | None:intergenic | 10.0% |
| !! | AATAAATACTAAAAAAACGA+TGG | + | chr4_1:53400870-53400889 | None:intergenic | 15.0% |
| !! | ATTTGCAAATTATATATAAC+AGG | - | chr4_1:53401019-53401038 | Msa0555400:CDS | 15.0% |
| !! | TTTGCAAATTATATATAACA+GGG | - | chr4_1:53401020-53401039 | Msa0555400:CDS | 15.0% |
| !!! | ATCATTTTTTTTATGCTAAA+AGG | - | chr4_1:53401140-53401159 | Msa0555400:intron | 15.0% |
| !!! | TTTGTAGATAGTTTTATATT+TGG | + | chr4_1:53401411-53401430 | None:intergenic | 15.0% |
| !! | AAATATTATTAAGCAAAACT+AGG | + | chr4_1:53401577-53401596 | None:intergenic | 15.0% |
| !! | AGATAATAATAAATAGTTGA+AGG | + | chr4_1:53401635-53401654 | None:intergenic | 15.0% |
| !! | TTCAAAGATAAATAAATTTG+TGG | - | chr4_1:53402420-53402439 | Msa0555400:CDS | 15.0% |
| !! | TCAAAGATAAATAAATTTGT+GGG | - | chr4_1:53402421-53402440 | Msa0555400:CDS | 15.0% |
| !!! | TAAAATCATTTTTAAAACAG+AGG | + | chr4_1:53403292-53403311 | None:intergenic | 15.0% |
| !!! | TTATACCATAAAGTTTTTTA+GGG | + | chr4_1:53405107-53405126 | None:intergenic | 15.0% |
| !!! | TTTATACCATAAAGTTTTTT+AGG | + | chr4_1:53405108-53405127 | None:intergenic | 15.0% |
| !! | AATATATAAGAAAAAATCTG+AGG | + | chr4_1:53405307-53405326 | None:intergenic | 15.0% |
| !! | TGATTTACTAAATTTAAGAA+TGG | + | chr4_1:53405450-53405469 | None:intergenic | 15.0% |
| !!! | CCAAATAATAATCATTTTTA+CGG | + | chr4_1:53406379-53406398 | None:intergenic | 15.0% |
| !!! | TCTTTTCTGTAAATACAATT+CGG | - | chr4_1:53401261-53401280 | Msa0555400:intron | 20.0% |
| !! | ATGAACTGTATTTGATATAT+TGG | - | chr4_1:53401292-53401311 | Msa0555400:intron | 20.0% |
| !! | TGAACTGTATTTGATATATT+GGG | - | chr4_1:53401293-53401312 | Msa0555400:intron | 20.0% |
| !!! | TTTGTTTTACTTTGTTTTCT+AGG | - | chr4_1:53401494-53401513 | Msa0555400:intron | 20.0% |
| !! | TCATACTAATAAATGTCATA+AGG | + | chr4_1:53401845-53401864 | None:intergenic | 20.0% |
| !! | ATTAGGGAGTAATATTTAAA+GGG | + | chr4_1:53402066-53402085 | None:intergenic | 20.0% |
| !! | AATTAGGGAGTAATATTTAA+AGG | + | chr4_1:53402067-53402086 | None:intergenic | 20.0% |
| !! | TTAAATATTACTCCCTAATT+TGG | - | chr4_1:53402067-53402086 | Msa0555400:CDS | 20.0% |
| !! | TAAATATTACTCCCTAATTT+GGG | - | chr4_1:53402068-53402087 | Msa0555400:CDS | 20.0% |
| !! | CAAAGATAAATAAATTTGTG+GGG | - | chr4_1:53402422-53402441 | Msa0555400:CDS | 20.0% |
| !! | TTTCATAAATTCCTCAATAT+AGG | + | chr4_1:53402800-53402819 | None:intergenic | 20.0% |
| !!! | AGCTATTTCAACAAATTAAA+TGG | + | chr4_1:53403262-53403281 | None:intergenic | 20.0% |
| !! | ATTACAAGATCAATAATTCT+AGG | + | chr4_1:53403820-53403839 | None:intergenic | 20.0% |
| !! | AATAATTAAAGTGAGACTAA+TGG | + | chr4_1:53404129-53404148 | None:intergenic | 20.0% |
| !! | TAAGAAATAACCAATTTAAG+AGG | + | chr4_1:53404177-53404196 | None:intergenic | 20.0% |
| !! | TCAATCATATGCAAAAAATA+TGG | - | chr4_1:53404517-53404536 | Msa0555400:intron | 20.0% |
| !! | CAATCATATGCAAAAAATAT+GGG | - | chr4_1:53404518-53404537 | Msa0555400:intron | 20.0% |
| !! | CTAATACTAATCAATAAGAA+TGG | + | chr4_1:53404583-53404602 | None:intergenic | 20.0% |
| !!! | CATTCTTATTGATTAGTATT+AGG | - | chr4_1:53404581-53404600 | Msa0555400:intron | 20.0% |
| !! | AATGATATGTATGTAAACAT+TGG | - | chr4_1:53404731-53404750 | Msa0555400:intron | 20.0% |
| !!! | TTTTTCCCTAAAAAACTTTA+TGG | - | chr4_1:53405099-53405118 | Msa0555400:intron | 20.0% |
| !! | TGGATGAATTTCATTTATTA+TGG | + | chr4_1:53405264-53405283 | None:intergenic | 20.0% |
| !! | GTTGCATAATTGAATAATTT+AGG | + | chr4_1:53406160-53406179 | None:intergenic | 20.0% |
| !! | CCGTAAAAATGATTATTATT+TGG | - | chr4_1:53406376-53406395 | Msa0555400:CDS | 20.0% |
| ! | TACAGTTACAAAGTTAGATT+TGG | - | chr4_1:53400484-53400503 | Msa0555400:three_prime_UTR | 25.0% |
| !!! | ATGACTTTTGTTGTTTTTGA+AGG | - | chr4_1:53400933-53400952 | Msa0555400:intron | 25.0% |
| ! | GAACTGTATTTGATATATTG+GGG | - | chr4_1:53401294-53401313 | Msa0555400:intron | 25.0% |
| !!! | ATTTGTGATGGATCTAAAAA+TGG | + | chr4_1:53401820-53401839 | None:intergenic | 25.0% |
| !!! | GTTTTTTCAATTTGACTTGA+TGG | - | chr4_1:53402123-53402142 | Msa0555400:intron | 25.0% |
| !! | TTTCTTTCCTTAGATGTTTT+GGG | - | chr4_1:53402354-53402373 | Msa0555400:intron | 25.0% |
| ! | CATCTTCTTTATAGATAGTT+TGG | + | chr4_1:53402481-53402500 | None:intergenic | 25.0% |
| ! | ATAAAGAAGATGCTTAGTAT+AGG | - | chr4_1:53402489-53402508 | Msa0555400:CDS | 25.0% |
| ! | GTATAGGTTAGGATTAATAT+AGG | - | chr4_1:53402505-53402524 | Msa0555400:CDS | 25.0% |
| !!! | AATATAGGTTTTGTAGAATG+TGG | - | chr4_1:53402520-53402539 | Msa0555400:CDS | 25.0% |
| !!! | ATATAGGTTTTGTAGAATGT+GGG | - | chr4_1:53402521-53402540 | Msa0555400:CDS | 25.0% |
| !!! | CTGTACTAATGATTTTAACT+TGG | - | chr4_1:53402595-53402614 | Msa0555400:intron | 25.0% |
| ! | CTTTCTATTAGAATGAAGTA+CGG | - | chr4_1:53402619-53402638 | Msa0555400:intron | 25.0% |
| ! | TTTCTATTAGAATGAAGTAC+GGG | - | chr4_1:53402620-53402639 | Msa0555400:intron | 25.0% |
| ! | TGTCTTTATAACCTATATTG+AGG | - | chr4_1:53402786-53402805 | Msa0555400:intron | 25.0% |
| ! | CTACTTTAACAAAATCTTCA+AGG | + | chr4_1:53402918-53402937 | None:intergenic | 25.0% |
| !! | ATTTTGTTAAAGTAGCAGAT+GGG | - | chr4_1:53402923-53402942 | Msa0555400:intron | 25.0% |
| ! | AATTTACAAACAATGAACGT+TGG | + | chr4_1:53402974-53402993 | None:intergenic | 25.0% |
| ! | TTGTTTGTAAATTAGTCGTT+AGG | - | chr4_1:53402981-53403000 | Msa0555400:intron | 25.0% |
| ! | ATTTCAACAAATTAAATGGC+AGG | + | chr4_1:53403258-53403277 | None:intergenic | 25.0% |
| !! | TTTCAGGAGAATTTTACAAA+GGG | + | chr4_1:53403420-53403439 | None:intergenic | 25.0% |
| ! | AAATCAATGGCAGTATTTAA+AGG | + | chr4_1:53403739-53403758 | None:intergenic | 25.0% |
| ! | TTTGATATTTGGTAGATATC+TGG | - | chr4_1:53403794-53403813 | Msa0555400:intron | 25.0% |
| ! | CATGTTAAAAGATAGAGTTA+TGG | + | chr4_1:53404678-53404697 | None:intergenic | 25.0% |
| !!! | TTTTTTAGGGAAAAAAGCAA+AGG | + | chr4_1:53405094-53405113 | None:intergenic | 25.0% |
| ! | CAATGCTCAATTAACATAAT+TGG | - | chr4_1:53405342-53405361 | Msa0555400:intron | 25.0% |
| ! | AGAAAATGAACTTACATAGA+TGG | - | chr4_1:53405516-53405535 | Msa0555400:intron | 25.0% |
| ! | GCAAAGAAAATAAGAAAAAG+TGG | + | chr4_1:53405675-53405694 | None:intergenic | 25.0% |
| ! | AACCATAAAAATAAGAGAGA+AGG | + | chr4_1:53405728-53405747 | None:intergenic | 25.0% |
| !!! | CTCTTATTTTTATGGTTACT+TGG | - | chr4_1:53405731-53405750 | Msa0555400:intron | 25.0% |
| !! | CAAAGTGTTAAAAACTTAGT+TGG | - | chr4_1:53405821-53405840 | Msa0555400:intron | 25.0% |
| ! | AACTCATAGTATAAGAGAAA+TGG | + | chr4_1:53406015-53406034 | None:intergenic | 25.0% |
| ! | TATATGTTATCATGACAGTA+TGG | - | chr4_1:53406071-53406090 | Msa0555400:intron | 25.0% |
| ! | AACAAAATCGTAACAATTCT+CGG | + | chr4_1:53406402-53406421 | None:intergenic | 25.0% |
| TAAAACAGAATGTGTTCACT+AGG | + | chr4_1:53400512-53400531 | None:intergenic | 30.0% | |
| AGTCCAAACAAAGTTAATGT+TGG | - | chr4_1:53400709-53400728 | Msa0555400:three_prime_UTR | 30.0% | |
| ACTCCAACATTAACTTTGTT+TGG | + | chr4_1:53400715-53400734 | None:intergenic | 30.0% | |
| ATATATAACAGGGTGCATAT+CGG | - | chr4_1:53401030-53401049 | Msa0555400:CDS | 30.0% | |
| CGTCTTATAATTAGATACAG+AGG | + | chr4_1:53401367-53401386 | None:intergenic | 30.0% | |
| !!! | TTAGATCCAATTTTTTGCAC+AGG | - | chr4_1:53401434-53401453 | Msa0555400:intron | 30.0% |
| !!! | TAGATCCAATTTTTTGCACA+GGG | - | chr4_1:53401435-53401454 | Msa0555400:intron | 30.0% |
| AGTAAAACAAAACTACCCTT+TGG | + | chr4_1:53401485-53401504 | None:intergenic | 30.0% | |
| TGTCATAAGGATATTTGTGA+TGG | + | chr4_1:53401832-53401851 | None:intergenic | 30.0% | |
| CAAATATAGAAACAGCTCAT+TGG | - | chr4_1:53401923-53401942 | Msa0555400:intron | 30.0% | |
| !! | GAAATCTCGTTTTTATTCTG+TGG | - | chr4_1:53402170-53402189 | Msa0555400:intron | 30.0% |
| AAAAAGCAAATTCAGCTAGT+GGG | + | chr4_1:53402207-53402226 | None:intergenic | 30.0% | |
| ! | GTTTCTTTCCTTAGATGTTT+TGG | - | chr4_1:53402353-53402372 | Msa0555400:intron | 30.0% |
| GCAAACCGATAGAAATTTAA+GGG | + | chr4_1:53402455-53402474 | None:intergenic | 30.0% | |
| CGTACTTCATTCTAATAGAA+AGG | + | chr4_1:53402621-53402640 | None:intergenic | 30.0% | |
| AATAAGCTGTTTATCCAAAC+AGG | + | chr4_1:53402686-53402705 | None:intergenic | 30.0% | |
| !! | TAAGTTTTGTGAGACTGTTT+GGG | + | chr4_1:53402875-53402894 | None:intergenic | 30.0% |
| !! | ATAAGTTTTGTGAGACTGTT+TGG | + | chr4_1:53402876-53402895 | None:intergenic | 30.0% |
| ACAAAACTTATGCCAATTAG+TGG | - | chr4_1:53402885-53402904 | Msa0555400:intron | 30.0% | |
| ! | GATTTTGTTAAAGTAGCAGA+TGG | - | chr4_1:53402922-53402941 | Msa0555400:intron | 30.0% |
| ! | TTTTGTTAAAGTAGCAGATG+GGG | - | chr4_1:53402924-53402943 | Msa0555400:intron | 30.0% |
| ! | TGACATTTTCTGTTTACCAA+GGG | - | chr4_1:53403082-53403101 | Msa0555400:CDS | 30.0% |
| CTTTAATTAATCTACCCCAA+TGG | - | chr4_1:53403134-53403153 | Msa0555400:intron | 30.0% | |
| ! | GTTTCAGGAGAATTTTACAA+AGG | + | chr4_1:53403421-53403440 | None:intergenic | 30.0% |
| AGTAGTGAAAAAACTGTTTC+AGG | + | chr4_1:53403436-53403455 | None:intergenic | 30.0% | |
| GCAGTATTTAAAGGAAGATT+TGG | + | chr4_1:53403730-53403749 | None:intergenic | 30.0% | |
| TTCTGTAGACTCAAAATCAA+TGG | + | chr4_1:53403752-53403771 | None:intergenic | 30.0% | |
| TAGTAACGGTATGTCTTTAT+AGG | + | chr4_1:53403888-53403907 | None:intergenic | 30.0% | |
| ! | GCTATGTTACTATCTACTTT+TGG | - | chr4_1:53404014-53404033 | Msa0555400:intron | 30.0% |
| ACTCTTCTTACCTCTTAAAT+TGG | - | chr4_1:53404164-53404183 | Msa0555400:intron | 30.0% | |
| TCTTCTCAAATGAAGGTAAA+AGG | - | chr4_1:53404292-53404311 | Msa0555400:intron | 30.0% | |
| ATCATCAACAAAAATCCTGA+TGG | + | chr4_1:53404477-53404496 | None:intergenic | 30.0% | |
| !! | ATCAGGATTTTTGTTGATGA+TGG | - | chr4_1:53404476-53404495 | Msa0555400:intron | 30.0% |
| !! | GTTGATGATGGTCATTTATT+AGG | - | chr4_1:53404488-53404507 | Msa0555400:intron | 30.0% |
| AGTCATAAGTGTTATCTTTG+CGG | + | chr4_1:53404827-53404846 | None:intergenic | 30.0% | |
| ! | GGGGAGTAAAATTTTTATAG+AGG | + | chr4_1:53405060-53405079 | None:intergenic | 30.0% |
| GCATACTGCAGAATTATATA+TGG | + | chr4_1:53405133-53405152 | None:intergenic | 30.0% | |
| !!! | TGCAGTATGCTATTTTTCTA+AGG | - | chr4_1:53405143-53405162 | Msa0555400:intron | 30.0% |
| !!! | AGTATGCTATTTTTCTAAGG+TGG | - | chr4_1:53405146-53405165 | Msa0555400:intron | 30.0% |
| AATGAAATTCATCCAATCCT+AGG | - | chr4_1:53405269-53405288 | Msa0555400:intron | 30.0% | |
| !!! | CTCCTTCTCTCTTATTTTTA+TGG | - | chr4_1:53405723-53405742 | Msa0555400:intron | 30.0% |
| CATATTTACATGACTCGTAA+TGG | - | chr4_1:53405945-53405964 | Msa0555400:intron | 30.0% | |
| TCTCTTATACTATGAGTTCT+TGG | - | chr4_1:53406017-53406036 | Msa0555400:intron | 30.0% | |
| ! | CATACCAAATTTTTGTCCTT+TGG | - | chr4_1:53406179-53406198 | Msa0555400:intron | 30.0% |
| CATTCCAAAGGACAAAAATT+TGG | + | chr4_1:53406186-53406205 | None:intergenic | 30.0% | |
| TACCTCAGAAGTAGAATTAT+TGG | - | chr4_1:53406211-53406230 | Msa0555400:intron | 30.0% | |
| TCAGAAGTAGAATTATTGGA+CGG | - | chr4_1:53406215-53406234 | Msa0555400:intron | 30.0% | |
| TGAGAAGTAGATTGAATAAG+AGG | - | chr4_1:53406319-53406338 | Msa0555400:CDS | 30.0% | |
| TTAGTCTCGATCAACTTATA+AGG | + | chr4_1:53406467-53406486 | None:intergenic | 30.0% | |
| ATCGAGACTAATGATTAATG+AGG | - | chr4_1:53406476-53406495 | Msa0555400:five_prime_UTR | 30.0% | |
| TCGAGACTAATGATTAATGA+GGG | - | chr4_1:53406477-53406496 | Msa0555400:five_prime_UTR | 30.0% | |
| TTTCATTTCCTCTGTTTCCA+TGG | - | chr4_1:53400543-53400562 | Msa0555400:three_prime_UTR | 35.0% | |
| GCTCTGTTATGGTATTACAT+TGG | + | chr4_1:53400838-53400857 | None:intergenic | 35.0% | |
| TATATAACAGGGTGCATATC+GGG | - | chr4_1:53401031-53401050 | Msa0555400:CDS | 35.0% | |
| TATGCATCACTCACATGAAT+TGG | + | chr4_1:53401121-53401140 | None:intergenic | 35.0% | |
| ! | ATCGAATGTATGAAAGTACG+AGG | - | chr4_1:53401238-53401257 | Msa0555400:intron | 35.0% |
| !! | TTCATTAACTTGTGCCTTGA+GGG | + | chr4_1:53401902-53401921 | None:intergenic | 35.0% |
| !! | TTTCATTAACTTGTGCCTTG+AGG | + | chr4_1:53401903-53401922 | None:intergenic | 35.0% |
| TATTACTCCCTAATTTGGGA+CGG | - | chr4_1:53402072-53402091 | Msa0555400:CDS | 35.0% | |
| !! | ATCTCGTTTTTATTCTGTGG+TGG | - | chr4_1:53402173-53402192 | Msa0555400:intron | 35.0% |
| CAAAAAGCAAATTCAGCTAG+TGG | + | chr4_1:53402208-53402227 | None:intergenic | 35.0% | |
| !! | CACTAGCTGAATTTGCTTTT+TGG | - | chr4_1:53402206-53402225 | Msa0555400:intron | 35.0% |
| AGACATTATTATGCCATCCA+AGG | + | chr4_1:53402238-53402257 | None:intergenic | 35.0% | |
| GGATGGCATAATAATGTCTT+TGG | - | chr4_1:53402239-53402258 | Msa0555400:intron | 35.0% | |
| AGAACACTGCAACAACAATT+AGG | + | chr4_1:53402278-53402297 | None:intergenic | 35.0% | |
| ACATCATCCCAAAACATCTA+AGG | + | chr4_1:53402364-53402383 | None:intergenic | 35.0% | |
| !!! | TAGATGTTTTGGGATGATGT+AGG | - | chr4_1:53402364-53402383 | Msa0555400:intron | 35.0% |
| !!! | AGATGTTTTGGGATGATGTA+GGG | - | chr4_1:53402365-53402384 | Msa0555400:intron | 35.0% |
| AAAAGCAGCAGCAATAAAAC+AGG | + | chr4_1:53402394-53402413 | None:intergenic | 35.0% | |
| !!! | TTTATTGCTGCTGCTTTTTC+TGG | - | chr4_1:53402396-53402415 | Msa0555400:CDS | 35.0% |
| CGATAGAAATTTAAGGGATG+CGG | + | chr4_1:53402449-53402468 | None:intergenic | 35.0% | |
| CGCATCCCTTAAATTTCTAT+CGG | - | chr4_1:53402447-53402466 | Msa0555400:CDS | 35.0% | |
| CGCAAACCGATAGAAATTTA+AGG | + | chr4_1:53402456-53402475 | None:intergenic | 35.0% | |
| GAAGATGCTTAGTATAGGTT+AGG | - | chr4_1:53402494-53402513 | Msa0555400:CDS | 35.0% | |
| CAAGGTTATAAGCCACTAAT+TGG | + | chr4_1:53402900-53402919 | None:intergenic | 35.0% | |
| TTTGTTAAAGTAGCAGATGG+GGG | - | chr4_1:53402925-53402944 | Msa0555400:intron | 35.0% | |
| ! | TTAGTCGTTAGGTTTGTTCA+CGG | - | chr4_1:53402992-53403011 | Msa0555400:intron | 35.0% |
| TTTGTTCACGGTTAAAACTC+CGG | - | chr4_1:53403004-53403023 | Msa0555400:CDS | 35.0% | |
| GTCTAAGAATTCTAGTCATG+AGG | + | chr4_1:53403031-53403050 | None:intergenic | 35.0% | |
| ! | GTGACATTTTCTGTTTACCA+AGG | - | chr4_1:53403081-53403100 | Msa0555400:CDS | 35.0% |
| ! | GACATTTTCTGTTTACCAAG+GGG | - | chr4_1:53403083-53403102 | Msa0555400:CDS | 35.0% |
| TTTGTCTTATCATTTCCCCT+TGG | + | chr4_1:53403101-53403120 | None:intergenic | 35.0% | |
| ACGGTTAAGATCAATTACTG+CGG | - | chr4_1:53403168-53403187 | Msa0555400:intron | 35.0% | |
| AACTGGAAAGAGTTATGTCA+CGG | + | chr4_1:53403221-53403240 | None:intergenic | 35.0% | |
| ATGAAATCGCTGTTGAAATG+CGG | + | chr4_1:53403653-53403672 | None:intergenic | 35.0% | |
| GGTATATAGATTTGGGTGTT+GGG | + | chr4_1:53403676-53403695 | None:intergenic | 35.0% | |
| TGGTATATAGATTTGGGTGT+TGG | + | chr4_1:53403677-53403696 | None:intergenic | 35.0% | |
| GGGAACTGGTATATAGATTT+GGG | + | chr4_1:53403683-53403702 | None:intergenic | 35.0% | |
| TGGGAACTGGTATATAGATT+TGG | + | chr4_1:53403684-53403703 | None:intergenic | 35.0% | |
| ATTACAGCCACCATAACATT+TGG | - | chr4_1:53403847-53403866 | Msa0555400:intron | 35.0% | |
| TAGATTCTGGGTGATAGTAA+CGG | + | chr4_1:53403902-53403921 | None:intergenic | 35.0% | |
| TACTATCACCCAGAATCTAA+AGG | - | chr4_1:53403903-53403922 | Msa0555400:intron | 35.0% | |
| ACTATCACCCAGAATCTAAA+GGG | - | chr4_1:53403904-53403923 | Msa0555400:intron | 35.0% | |
| AATCCAACCCTTTAGATTCT+GGG | + | chr4_1:53403914-53403933 | None:intergenic | 35.0% | |
| AAATCCAACCCTTTAGATTC+TGG | + | chr4_1:53403915-53403934 | None:intergenic | 35.0% | |
| ! | TCTAAAGGGTTGGATTTTTC+TGG | - | chr4_1:53403918-53403937 | Msa0555400:intron | 35.0% |
| GAGTCATGTATAAAGTGTGT+CGG | + | chr4_1:53403991-53404010 | None:intergenic | 35.0% | |
| !! | CTATCTACTTTTGGTCTATG+AGG | - | chr4_1:53404023-53404042 | Msa0555400:intron | 35.0% |
| ! | ATTTTACAACCGTCTTTGAC+GGG | + | chr4_1:53404104-53404123 | None:intergenic | 35.0% |
| ! | CATTTTACAACCGTCTTTGA+CGG | + | chr4_1:53404105-53404124 | None:intergenic | 35.0% |
| TAGATCCTTCAGAAGAACAA+TGG | - | chr4_1:53404260-53404279 | Msa0555400:intron | 35.0% | |
| AGAGATCTCTTCTCAAATGA+AGG | - | chr4_1:53404285-53404304 | Msa0555400:intron | 35.0% | |
| TCATTGCTATGATTGTTTGC+AGG | - | chr4_1:53404376-53404395 | Msa0555400:intron | 35.0% | |
| TATGATTGTTTGCAGGCTAA+AGG | - | chr4_1:53404383-53404402 | Msa0555400:intron | 35.0% | |
| ! | TCATTTCCCTTTGTTTGACA+TGG | - | chr4_1:53404406-53404425 | Msa0555400:intron | 35.0% |
| ! | ATGGCTTTTACATCTCTATC+TGG | + | chr4_1:53404458-53404477 | None:intergenic | 35.0% |
| ATAGAGATGTAAAAGCCATC+AGG | - | chr4_1:53404459-53404478 | Msa0555400:intron | 35.0% | |
| GCAAAAAATATGGGACTGTA+TGG | - | chr4_1:53404527-53404546 | Msa0555400:intron | 35.0% | |
| AAGAATGGTCTACTTACCTA+AGG | + | chr4_1:53404568-53404587 | None:intergenic | 35.0% | |
| TTAGTATTAGGCCAAAGAGT+TGG | - | chr4_1:53404593-53404612 | Msa0555400:intron | 35.0% | |
| ! | TTTTCGCAAAGTAAGCTGAA+AGG | + | chr4_1:53404857-53404876 | None:intergenic | 35.0% |
| !! | CAATTGACTTTTTACAGCCA+CGG | + | chr4_1:53404891-53404910 | None:intergenic | 35.0% |
| !!! | GCTATTTTTCTAAGGTGGAA+TGG | - | chr4_1:53405151-53405170 | Msa0555400:intron | 35.0% |
| CTGTTAATCATTAGTGACTG+AGG | - | chr4_1:53405197-53405216 | Msa0555400:intron | 35.0% | |
| TCAAAAAGTAAGCCTAGGAT+TGG | + | chr4_1:53405284-53405303 | None:intergenic | 35.0% | |
| GCATGAATAAGTTGTAGCAA+TGG | - | chr4_1:53405491-53405510 | Msa0555400:intron | 35.0% | |
| TAGTTCTCATTCCAATGATG+CGG | + | chr4_1:53405564-53405583 | None:intergenic | 35.0% | |
| AACTACACTACGAGAGAATT+TGG | - | chr4_1:53405579-53405598 | Msa0555400:intron | 35.0% | |
| ACGAGAGAATTTGGAAAATC+TGG | - | chr4_1:53405588-53405607 | Msa0555400:intron | 35.0% | |
| CGAGAGAATTTGGAAAATCT+GGG | - | chr4_1:53405589-53405608 | Msa0555400:intron | 35.0% | |
| GAGAGAATTTGGAAAATCTG+GGG | - | chr4_1:53405590-53405609 | Msa0555400:intron | 35.0% | |
| ! | TGATTGGTTATGTGATTCCA+TGG | + | chr4_1:53405625-53405644 | None:intergenic | 35.0% |
| ATGGAATCACATAACCAATC+AGG | - | chr4_1:53405624-53405643 | Msa0555400:intron | 35.0% | |
| TTGCTTATTGTAGTTGCTTG+AGG | - | chr4_1:53405691-53405710 | Msa0555400:intron | 35.0% | |
| CTGTTACTATTTGTGCAGAT+TGG | - | chr4_1:53405864-53405883 | Msa0555400:CDS | 35.0% | |
| ATACTATGAGTTCTTGGAGA+TGG | - | chr4_1:53406023-53406042 | Msa0555400:intron | 35.0% | |
| TACTATGAGTTCTTGGAGAT+GGG | - | chr4_1:53406024-53406043 | Msa0555400:intron | 35.0% | |
| ! | TGAGGTATTTGTCATTCCAA+AGG | + | chr4_1:53406198-53406217 | None:intergenic | 35.0% |
| GTCCAATAATTCTACTTCTG+AGG | + | chr4_1:53406216-53406235 | None:intergenic | 35.0% | |
| TCGAATCGCAAATGAAACAA+GGG | + | chr4_1:53406285-53406304 | None:intergenic | 35.0% | |
| ! | CGATTTTGTTGATGCTAGAA+CGG | - | chr4_1:53406412-53406431 | Msa0555400:five_prime_UTR | 35.0% |
| TCAACGGACAATTTCTCAAC+CGG | - | chr4_1:53400581-53400600 | Msa0555400:three_prime_UTR | 40.0% | |
| ! | AGTTACCGAAGCTTTTCTTG+CGG | - | chr4_1:53400681-53400700 | Msa0555400:three_prime_UTR | 40.0% |
| ! | CAATGGAAAACCTGTGGTTT+TGG | - | chr4_1:53401058-53401077 | Msa0555400:CDS | 40.0% |
| CTAACACATTCCAAAACCAC+AGG | + | chr4_1:53401071-53401090 | None:intergenic | 40.0% | |
| AATGTGTTAGAGAAGCAGAG+AGG | - | chr4_1:53401081-53401100 | Msa0555400:intron | 40.0% | |
| GATACAGAGGAAGTAGTAAG+TGG | + | chr4_1:53401354-53401373 | None:intergenic | 40.0% | |
| TTTGGCCAACAACCTCTATA+GGG | + | chr4_1:53401467-53401486 | None:intergenic | 40.0% | |
| TATAGAGGTTGTTGGCCAAA+GGG | - | chr4_1:53401467-53401486 | Msa0555400:intron | 40.0% | |
| !! | AATGTTAACTTGTGCCCTCA+AGG | - | chr4_1:53401885-53401904 | Msa0555400:intron | 40.0% |
| !! | TAGTGTTGACTTGTGCACTT+AGG | + | chr4_1:53402043-53402062 | None:intergenic | 40.0% |
| AGAATGAAGTACGGGTAATC+AGG | - | chr4_1:53402628-53402647 | Msa0555400:intron | 40.0% | |
| ! | AGTGTGAAAACTAGCCTGTT+TGG | - | chr4_1:53402669-53402688 | Msa0555400:intron | 40.0% |
| TTGTTAAAGTAGCAGATGGG+GGG | - | chr4_1:53402926-53402945 | Msa0555400:intron | 40.0% | |
| AGAATTCTAGTCATGAGGTC+CGG | + | chr4_1:53403026-53403045 | None:intergenic | 40.0% | |
| TGCGGCACGTATTTAATTCT+CGG | - | chr4_1:53403186-53403205 | Msa0555400:intron | 40.0% | |
| !! | ATTAGAAGCCTTGTTGTCCA+AGG | + | chr4_1:53403392-53403411 | None:intergenic | 40.0% |
| ACCGTTTCAAATGTTTGAGC+AGG | - | chr4_1:53403485-53403504 | Msa0555400:intron | 40.0% | |
| CCCTGCTCAAACATTTGAAA+CGG | + | chr4_1:53403489-53403508 | None:intergenic | 40.0% | |
| CCGTTTCAAATGTTTGAGCA+GGG | - | chr4_1:53403486-53403505 | Msa0555400:intron | 40.0% | |
| ATATGTATGCTTCCACCCAT+GGG | + | chr4_1:53403520-53403539 | None:intergenic | 40.0% | |
| AGACGATTCTGAGTTCATCA+AGG | - | chr4_1:53403570-53403589 | Msa0555400:intron | 40.0% | |
| TAAACGAATAGCTGCAGTTC+AGG | - | chr4_1:53403594-53403613 | Msa0555400:intron | 40.0% | |
| !! | ATTGAATACTGACTTCGACC+AGG | + | chr4_1:53403707-53403726 | None:intergenic | 40.0% |
| CATCTCTCCAAATGTTATGG+TGG | + | chr4_1:53403857-53403876 | None:intergenic | 40.0% | |
| CAGCATCTCTCCAAATGTTA+TGG | + | chr4_1:53403860-53403879 | None:intergenic | 40.0% | |
| CATAACATTTGGAGAGATGC+TGG | - | chr4_1:53403858-53403877 | Msa0555400:intron | 40.0% | |
| ! | GTTGGATTTTTCTGGACTGA+TGG | - | chr4_1:53403926-53403945 | Msa0555400:intron | 40.0% |
| ! | TGGACTGATGGATGACATTA+AGG | - | chr4_1:53403938-53403957 | Msa0555400:intron | 40.0% |
| AGTTTGACATTGTAGCCTCT+AGG | - | chr4_1:53404064-53404083 | Msa0555400:intron | 40.0% | |
| GTTTGACATTGTAGCCTCTA+GGG | - | chr4_1:53404065-53404084 | Msa0555400:intron | 40.0% | |
| AGTTCAAATCCCGTCAAAGA+CGG | - | chr4_1:53404092-53404111 | Msa0555400:intron | 40.0% | |
| TCTCTCCATTGTTCTTCTGA+AGG | + | chr4_1:53404268-53404287 | None:intergenic | 40.0% | |
| GGTATGCCATGTCAAACAAA+GGG | + | chr4_1:53404415-53404434 | None:intergenic | 40.0% | |
| TGGTATGCCATGTCAAACAA+AGG | + | chr4_1:53404416-53404435 | None:intergenic | 40.0% | |
| TTGTTTGACATGGCATACCA+AGG | - | chr4_1:53404416-53404435 | Msa0555400:intron | 40.0% | |
| GATTTCCACTAGCAAAACCT+TGG | + | chr4_1:53404436-53404455 | None:intergenic | 40.0% | |
| ! | TATTAGGCCAAAGAGTTGGT+TGG | - | chr4_1:53404597-53404616 | Msa0555400:intron | 40.0% |
| AGTAGTTCCAACCAACTCTT+TGG | + | chr4_1:53404607-53404626 | None:intergenic | 40.0% | |
| !! | TTTAGTTTGAAGCCTTGAGC+TGG | - | chr4_1:53404760-53404779 | Msa0555400:intron | 40.0% |
| AAGTTCTGTAAACCAGCTCA+AGG | + | chr4_1:53404775-53404794 | None:intergenic | 40.0% | |
| ! | TGAGCTGGTTTACAGAACTT+TGG | - | chr4_1:53404775-53404794 | Msa0555400:intron | 40.0% |
| ATCCAGACTTGAAGAAGTTG+TGG | - | chr4_1:53404984-53405003 | Msa0555400:intron | 40.0% | |
| GTTGTGGCTTAAAGAAGTCA+AGG | - | chr4_1:53405000-53405019 | Msa0555400:intron | 40.0% | |
| AAAAAAGCAAAGGCTGTGAG+AGG | + | chr4_1:53405084-53405103 | None:intergenic | 40.0% | |
| ATCATTAGTGACTGAGGCTA+TGG | - | chr4_1:53405203-53405222 | Msa0555400:intron | 40.0% | |
| TGAGGTCAAAAAGTAAGCCT+AGG | + | chr4_1:53405289-53405308 | None:intergenic | 40.0% | |
| TACATAGATGGCTCCTTTAC+AGG | - | chr4_1:53405528-53405547 | Msa0555400:intron | 40.0% | |
| GTTATGTGATTCCATGGCAA+TGG | + | chr4_1:53405619-53405638 | None:intergenic | 40.0% | |
| TGCATTCAACTGAACCTGAT+TGG | + | chr4_1:53405641-53405660 | None:intergenic | 40.0% | |
| TACTTGGAGACCAAGTATCT+TGG | - | chr4_1:53405747-53405766 | Msa0555400:intron | 40.0% | |
| TGACTCGTAATGGTCGTATA+AGG | - | chr4_1:53405955-53405974 | Msa0555400:intron | 40.0% | |
| TGTTATCATGACAGTATGGC+TGG | - | chr4_1:53406075-53406094 | Msa0555400:intron | 40.0% | |
| !! | CAGTATGGCTGGTCTTAATA+CGG | - | chr4_1:53406086-53406105 | Msa0555400:intron | 40.0% |
| !! | AGTATGGCTGGTCTTAATAC+GGG | - | chr4_1:53406087-53406106 | Msa0555400:intron | 40.0% |
| GACGGAGCTGAATAAAAGTT+GGG | - | chr4_1:53406233-53406252 | Msa0555400:CDS | 40.0% | |
| GCAAATGAAACAAGGGGAAA+AGG | + | chr4_1:53406278-53406297 | None:intergenic | 40.0% | |
| CGAATCGCAAATGAAACAAG+GGG | + | chr4_1:53406284-53406303 | None:intergenic | 40.0% | |
| GTCGAATCGCAAATGAAACA+AGG | + | chr4_1:53406286-53406305 | None:intergenic | 40.0% | |
| GCGATTCGCAATCTTCTCAA+CGG | - | chr4_1:53400565-53400584 | Msa0555400:three_prime_UTR | 45.0% | |
| ! | CGAAGACATGAATCTAGCTC+CGG | + | chr4_1:53400617-53400636 | None:intergenic | 45.0% |
| GAGCTAGATTCATGTCTTCG+TGG | - | chr4_1:53400617-53400636 | Msa0555400:three_prime_UTR | 45.0% | |
| GATTCATGTCTTCGTGGTTC+AGG | - | chr4_1:53400623-53400642 | Msa0555400:three_prime_UTR | 45.0% | |
| CTGATCCGCAAGAAAAGCTT+CGG | + | chr4_1:53400689-53400708 | None:intergenic | 45.0% | |
| ! | GGAACAGTGTTGCTCTGTTA+TGG | + | chr4_1:53400849-53400868 | None:intergenic | 45.0% |
| GGATGACAATGGAAAACCTG+TGG | - | chr4_1:53401052-53401071 | Msa0555400:CDS | 45.0% | |
| TGATATATTGGGGTGCGAGA+TGG | - | chr4_1:53401304-53401323 | Msa0555400:intron | 45.0% | |
| CGAGACCCTGTGCAAAAAAT+TGG | + | chr4_1:53401443-53401462 | None:intergenic | 45.0% | |
| CTTTGGCCAACAACCTCTAT+AGG | + | chr4_1:53401468-53401487 | None:intergenic | 45.0% | |
| CTATAGAGGTTGTTGGCCAA+AGG | - | chr4_1:53401466-53401485 | Msa0555400:intron | 45.0% | |
| TGTAGTCCTCTTGCAAGCTT+TGG | - | chr4_1:53401540-53401559 | Msa0555400:intron | 45.0% | |
| GAAACACCAAAGCTTGCAAG+AGG | + | chr4_1:53401549-53401568 | None:intergenic | 45.0% | |
| !!! | TTGCTTTTTGGTACGTGCCT+TGG | - | chr4_1:53402218-53402237 | Msa0555400:intron | 45.0% |
| !! | TTTTTGGTACGTGCCTTGGA+TGG | - | chr4_1:53402222-53402241 | Msa0555400:intron | 45.0% |
| TCCTTGCTTTGTGCTTTGTG+TGG | - | chr4_1:53402322-53402341 | Msa0555400:intron | 45.0% | |
| ACCACACAAAGCACAAAGCA+AGG | + | chr4_1:53402326-53402345 | None:intergenic | 45.0% | |
| TTGTAGAATGTGGGACTGCT+TGG | - | chr4_1:53402530-53402549 | Msa0555400:CDS | 45.0% | |
| TGTTAAAGTAGCAGATGGGG+GGG | - | chr4_1:53402927-53402946 | Msa0555400:intron | 45.0% | |
| ! | TGTTCATCGACTGAGTTGTC+TGG | - | chr4_1:53403059-53403078 | Msa0555400:CDS | 45.0% |
| CTACCCCAATGGTATGAGAT+CGG | - | chr4_1:53403145-53403164 | Msa0555400:intron | 45.0% | |
| AGGCAAGCAGAAGTCAAAAC+TGG | + | chr4_1:53403238-53403257 | None:intergenic | 45.0% | |
| CAAGGTAGGTCTGAATCTGA+TGG | + | chr4_1:53403374-53403393 | None:intergenic | 45.0% | |
| CATCAGATTCAGACCTACCT+TGG | - | chr4_1:53403372-53403391 | Msa0555400:CDS | 45.0% | |
| CATATGTATGCTTCCACCCA+TGG | + | chr4_1:53403521-53403540 | None:intergenic | 45.0% | |
| ! | CATGGGTGGAAGCATACATA+TGG | - | chr4_1:53403519-53403538 | Msa0555400:intron | 45.0% |
| GGTTCAAGAATCACTGAAGC+TGG | - | chr4_1:53403540-53403559 | Msa0555400:intron | 45.0% | |
| GAACTCAGAATCGTCTCCAT+AGG | + | chr4_1:53403566-53403585 | None:intergenic | 45.0% | |
| ! | CTGCAGTTCAGGCTTTATCT+GGG | - | chr4_1:53403605-53403624 | Msa0555400:intron | 45.0% |
| TCTATATACCAGTTCCCACC+TGG | - | chr4_1:53403686-53403705 | Msa0555400:intron | 45.0% | |
| !! | AATACTGACTTCGACCAGGT+GGG | + | chr4_1:53403703-53403722 | None:intergenic | 45.0% |
| TCACCCAGAATCTAAAGGGT+TGG | - | chr4_1:53403908-53403927 | Msa0555400:intron | 45.0% | |
| GATTTGAACTTCGTCCCTAG+AGG | + | chr4_1:53404082-53404101 | None:intergenic | 45.0% | |
| CTTACACAGAATGCTCCAGA+CGG | - | chr4_1:53404193-53404212 | Msa0555400:intron | 45.0% | |
| AGCAGAAAGAAAGAACCGTC+TGG | + | chr4_1:53404211-53404230 | None:intergenic | 45.0% | |
| TCTGAAGGATCTACTCCAGT+AGG | + | chr4_1:53404253-53404272 | None:intergenic | 45.0% | |
| ! | GCATACCAAGGTTTTGCTAG+TGG | - | chr4_1:53404428-53404447 | Msa0555400:intron | 45.0% |
| CGAAAATGAGAAACAAGCCG+TGG | - | chr4_1:53404871-53404890 | Msa0555400:intron | 45.0% | |
| !! | AGAGGTGGATTGCTGTACAT+GGG | + | chr4_1:53404929-53404948 | None:intergenic | 45.0% |
| !! | AAGAGGTGGATTGCTGTACA+TGG | + | chr4_1:53404930-53404949 | None:intergenic | 45.0% |
| TACAGCAATCCACCTCTTCA+TGG | - | chr4_1:53404932-53404951 | Msa0555400:intron | 45.0% | |
| ! | CTTGTCGTTTCAACTGTCCT+TGG | - | chr4_1:53404959-53404978 | Msa0555400:intron | 45.0% |
| TCTTCAAGTCTGGATCACCA+AGG | + | chr4_1:53404979-53404998 | None:intergenic | 45.0% | |
| AGCCACAACTTCTTCAAGTC+TGG | + | chr4_1:53404989-53405008 | None:intergenic | 45.0% | |
| GATGGCTCCTTTACAGGTTA+TGG | - | chr4_1:53405534-53405553 | Msa0555400:intron | 45.0% | |
| TGGAGACCAAGTATCTTGGT+AGG | - | chr4_1:53405751-53405770 | Msa0555400:intron | 45.0% | |
| GGAGACCAAGTATCTTGGTA+GGG | - | chr4_1:53405752-53405771 | Msa0555400:intron | 45.0% | |
| GAGACCAAGTATCTTGGTAG+GGG | - | chr4_1:53405753-53405772 | Msa0555400:intron | 45.0% | |
| AAGTATCTTGGTAGGGGAGA+GGG | - | chr4_1:53405759-53405778 | Msa0555400:intron | 45.0% | |
| ATTGGCATGTTCTGCTACAG+CGG | - | chr4_1:53405882-53405901 | Msa0555400:CDS | 45.0% | |
| GTCAAACGATCAACCTGTTC+TGG | + | chr4_1:53405915-53405934 | None:intergenic | 45.0% | |
| GGACGGAGCTGAATAAAAGT+TGG | - | chr4_1:53406232-53406251 | Msa0555400:CDS | 45.0% | |
| !!! | ACAAAATTATTTTTTATTAA+CGG | + | chr4_1:53401691-53401710 | None:intergenic | 5.0% |
| !!! | TTTATATAAATTTTGATATT+TGG | - | chr4_1:53403783-53403802 | Msa0555400:intron | 5.0% |
| GAGAAGATTGCGAATCGCCA+TGG | + | chr4_1:53400563-53400582 | None:intergenic | 50.0% | |
| ! | CATGAATCTAGCTCCGGTGA+CGG | + | chr4_1:53400611-53400630 | None:intergenic | 50.0% |
| GAACATCGAACCAGCTCCTA+AGG | - | chr4_1:53400645-53400664 | Msa0555400:three_prime_UTR | 50.0% | |
| AGGATTGGATCCTTAGGAGC+TGG | + | chr4_1:53400658-53400677 | None:intergenic | 50.0% | |
| GCTCCTAAGGATCCAATCCT+CGG | - | chr4_1:53400658-53400677 | Msa0555400:three_prime_UTR | 50.0% | |
| ACTCCGAGGATTGGATCCTT+AGG | + | chr4_1:53400664-53400683 | None:intergenic | 50.0% | |
| GAAAAGCTTCGGTAACTCCG+AGG | + | chr4_1:53400678-53400697 | None:intergenic | 50.0% | |
| GGTGCATATCGGGATGACAA+TGG | - | chr4_1:53401041-53401060 | Msa0555400:CDS | 50.0% | |
| GAAGCAGAGAGGAGAATTGC+AGG | - | chr4_1:53401092-53401111 | Msa0555400:intron | 50.0% | |
| CTCGTCCCTATAGAGGTTGT+TGG | - | chr4_1:53401459-53401478 | Msa0555400:intron | 50.0% | |
| ! | TACTCCCTAATTTGGGACGG+AGG | - | chr4_1:53402075-53402094 | Msa0555400:CDS | 50.0% |
| ACTGCCTCCGTCCCAAATTA+GGG | + | chr4_1:53402082-53402101 | None:intergenic | 50.0% | |
| TACTGCCTCCGTCCCAAATT+AGG | + | chr4_1:53402083-53402102 | None:intergenic | 50.0% | |
| GTTAAAGTAGCAGATGGGGG+GGG | - | chr4_1:53402928-53402947 | Msa0555400:intron | 50.0% | |
| CGTCCGATCTCATACCATTG+GGG | + | chr4_1:53403151-53403170 | None:intergenic | 50.0% | |
| CCGTCCGATCTCATACCATT+GGG | + | chr4_1:53403152-53403171 | None:intergenic | 50.0% | |
| CCCAATGGTATGAGATCGGA+CGG | - | chr4_1:53403149-53403168 | Msa0555400:intron | 50.0% | |
| ACCGTCCGATCTCATACCAT+TGG | + | chr4_1:53403153-53403172 | None:intergenic | 50.0% | |
| CAGACCTACCTTGGACAACA+AGG | - | chr4_1:53403381-53403400 | Msa0555400:CDS | 50.0% | |
| !! | GAAGCCTTGTTGTCCAAGGT+AGG | + | chr4_1:53403388-53403407 | None:intergenic | 50.0% |
| !! | AGCAGGGAGTATCTTCCCAT+GGG | - | chr4_1:53403502-53403521 | Msa0555400:intron | 50.0% |
| ! | GAATCACTGAAGCTGGCCTA+TGG | - | chr4_1:53403547-53403566 | Msa0555400:intron | 50.0% |
| ! | GCTGCAGTTCAGGCTTTATC+TGG | - | chr4_1:53403604-53403623 | Msa0555400:intron | 50.0% |
| ! | GTTCAGGCTTTATCTGGGAC+TGG | - | chr4_1:53403610-53403629 | Msa0555400:intron | 50.0% |
| !! | GAATACTGACTTCGACCAGG+TGG | + | chr4_1:53403704-53403723 | None:intergenic | 50.0% |
| GCTTGTGCTCACAATCCTAC+TGG | - | chr4_1:53404235-53404254 | Msa0555400:intron | 50.0% | |
| ! | ACCTAAGGCATCCAACTCTC+TGG | + | chr4_1:53404553-53404572 | None:intergenic | 50.0% |
| TGGATTGCTGTACATGGGTC+TGG | + | chr4_1:53404924-53404943 | None:intergenic | 50.0% | |
| ACAAGTGCTCCATGAAGAGG+TGG | + | chr4_1:53404944-53404963 | None:intergenic | 50.0% | |
| ACGACAAGTGCTCCATGAAG+AGG | + | chr4_1:53404947-53404966 | None:intergenic | 50.0% | |
| AAGCAAAGGCTGTGAGAGGT+GGG | + | chr4_1:53405080-53405099 | None:intergenic | 50.0% | |
| AAAGCAAAGGCTGTGAGAGG+TGG | + | chr4_1:53405081-53405100 | None:intergenic | 50.0% | |
| CGGTCTGCCATAACCTGTAA+AGG | + | chr4_1:53405544-53405563 | None:intergenic | 50.0% | |
| GTTATGGCAGACCGCATCAT+TGG | - | chr4_1:53405550-53405569 | Msa0555400:intron | 50.0% | |
| CTCTCCCCTACCAAGATACT+TGG | + | chr4_1:53405760-53405779 | None:intergenic | 50.0% | |
| CAAGTATCTTGGTAGGGGAG+AGG | - | chr4_1:53405758-53405777 | Msa0555400:intron | 50.0% | |
| TTGGCATGTTCTGCTACAGC+GGG | - | chr4_1:53405883-53405902 | Msa0555400:CDS | 50.0% | |
| GGTCTTAATACGGGCAACGT+TGG | - | chr4_1:53406096-53406115 | Msa0555400:intron | 50.0% | |
| TACGGGCAACGTTGGATATG+TGG | - | chr4_1:53406104-53406123 | Msa0555400:intron | 50.0% | |
| TGTGGCTAACGCTATCAACG+AGG | - | chr4_1:53406122-53406141 | Msa0555400:intron | 50.0% | |
| GCGAATCGCCATGGAAACAG+AGG | + | chr4_1:53400554-53400573 | None:intergenic | 55.0% | |
| GCTTCGGTAACTCCGAGGAT+TGG | + | chr4_1:53400673-53400692 | None:intergenic | 55.0% | |
| ACAGGGTCTCGTCCCTATAG+AGG | - | chr4_1:53401452-53401471 | Msa0555400:intron | 55.0% | |
| !! | GAGCAGGGAGTATCTTCCCA+TGG | - | chr4_1:53403501-53403520 | Msa0555400:intron | 55.0% |
| !! | AGGGAGTATCTTCCCATGGG+TGG | - | chr4_1:53403505-53403524 | Msa0555400:intron | 55.0% |
| GGACTGTATGGCCAGAGAGT+TGG | - | chr4_1:53404539-53404558 | Msa0555400:intron | 55.0% | |
| GCCAGAGAGTTGGATGCCTT+AGG | - | chr4_1:53404549-53404568 | Msa0555400:intron | 55.0% | |
| AGCAAAGGCTGTGAGAGGTG+GGG | + | chr4_1:53405079-53405098 | None:intergenic | 55.0% | |
| ! | ATCTGGGGTCTCCATTGCCA+TGG | - | chr4_1:53405605-53405624 | Msa0555400:intron | 55.0% |
| AAGTAGCAGATGGGGGGGGA+AGG | - | chr4_1:53402932-53402951 | Msa0555400:intron | 60.0% | |
| GACTTCGACCAGGTGGGAAC+TGG | + | chr4_1:53403697-53403716 | None:intergenic | 60.0% | |
| CAGCGGGATGACACCAGAAC+AGG | - | chr4_1:53405899-53405918 | Msa0555400:CDS | 60.0% | |
| CTCAACCGGAGCTCCGTCAC+CGG | - | chr4_1:53400595-53400614 | Msa0555400:three_prime_UTR | 65.0% | |
| !! | TAGCTCCGGTGACGGAGCTC+CGG | + | chr4_1:53400603-53400622 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 53400439 | 53406524 | 53400439 | ID=Msa0555400;Name=Msa0555400 |
| chr4_1 | mRNA | 53400439 | 53406524 | 53400439 | ID=Msa0555400-mRNA-1;Parent=Msa0555400;Name=Msa0555400-mRNA-1;_AED=0.08;_eAED=0.08;_QI=123|0.87|1|1|1|1|9|363|389 |
| chr4_1 | exon | 53400439 | 53400874 | 53400439 | ID=Msa0555400-mRNA-1:exon:15535;Parent=Msa0555400-mRNA-1 |
| chr4_1 | exon | 53400987 | 53401081 | 53400987 | ID=Msa0555400-mRNA-1:exon:15534;Parent=Msa0555400-mRNA-1 |
| chr4_1 | exon | 53401318 | 53401413 | 53401318 | ID=Msa0555400-mRNA-1:exon:15533;Parent=Msa0555400-mRNA-1 |
| chr4_1 | exon | 53401942 | 53402101 | 53401942 | ID=Msa0555400-mRNA-1:exon:15532;Parent=Msa0555400-mRNA-1 |
| chr4_1 | exon | 53402393 | 53402565 | 53402393 | ID=Msa0555400-mRNA-1:exon:15531;Parent=Msa0555400-mRNA-1 |
| chr4_1 | exon | 53403004 | 53403109 | 53403004 | ID=Msa0555400-mRNA-1:exon:15530;Parent=Msa0555400-mRNA-1 |
| chr4_1 | exon | 53403250 | 53403456 | 53403250 | ID=Msa0555400-mRNA-1:exon:15529;Parent=Msa0555400-mRNA-1 |
| chr4_1 | exon | 53405837 | 53405922 | 53405837 | ID=Msa0555400-mRNA-1:exon:15528;Parent=Msa0555400-mRNA-1 |
| chr4_1 | exon | 53406228 | 53406524 | 53406228 | ID=Msa0555400-mRNA-1:exon:15527;Parent=Msa0555400-mRNA-1 |
| chr4_1 | five_prime_UTR | 53406402 | 53406524 | 53406402 | ID=Msa0555400-mRNA-1:five_prime_utr;Parent=Msa0555400-mRNA-1 |
| chr4_1 | CDS | 53406228 | 53406401 | 53406228 | ID=Msa0555400-mRNA-1:cds;Parent=Msa0555400-mRNA-1 |
| chr4_1 | CDS | 53405837 | 53405922 | 53405837 | ID=Msa0555400-mRNA-1:cds;Parent=Msa0555400-mRNA-1 |
| chr4_1 | CDS | 53403250 | 53403456 | 53403250 | ID=Msa0555400-mRNA-1:cds;Parent=Msa0555400-mRNA-1 |
| chr4_1 | CDS | 53403004 | 53403109 | 53403004 | ID=Msa0555400-mRNA-1:cds;Parent=Msa0555400-mRNA-1 |
| chr4_1 | CDS | 53402393 | 53402565 | 53402393 | ID=Msa0555400-mRNA-1:cds;Parent=Msa0555400-mRNA-1 |
| chr4_1 | CDS | 53401942 | 53402101 | 53401942 | ID=Msa0555400-mRNA-1:cds;Parent=Msa0555400-mRNA-1 |
| chr4_1 | CDS | 53401318 | 53401413 | 53401318 | ID=Msa0555400-mRNA-1:cds;Parent=Msa0555400-mRNA-1 |
| chr4_1 | CDS | 53400987 | 53401081 | 53400987 | ID=Msa0555400-mRNA-1:cds;Parent=Msa0555400-mRNA-1 |
| chr4_1 | CDS | 53400802 | 53400874 | 53400802 | ID=Msa0555400-mRNA-1:cds;Parent=Msa0555400-mRNA-1 |
| chr4_1 | three_prime_UTR | 53400439 | 53400801 | 53400439 | ID=Msa0555400-mRNA-1:three_prime_utr;Parent=Msa0555400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
