Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0668920 | XP_039689897.1 | 86.688 | 308 | 34 | 2 | 1 | 308 | 1 | 301 | 1.98e-173 | 513 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0668920 | sp|C0SQ89|CMT3_ORYSJ | 43.590 | 273 | 126 | 6 | 52 | 308 | 104 | 364 | 1.44e-57 | 202 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0668920 | A0A072UIN2 | 86.688 | 308 | 34 | 2 | 1 | 308 | 1 | 301 | 9.46e-174 | 513 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0094780 | Msa0668920 | 0.805735 | 1.156654e-49 | -8.615850e-47 |
| Msa0658640 | Msa0668920 | 0.806683 | 7.304186e-50 | -8.615850e-47 |
| Msa0668920 | Msa0703600 | 0.816437 | 5.532548e-52 | -8.615850e-47 |
| Msa0668920 | Msa0709200 | 0.815654 | 8.277258e-52 | -8.615850e-47 |
| Msa0668920 | Msa0709440 | 0.812444 | 4.227739e-51 | -8.615850e-47 |
| Msa0668920 | Msa0714790 | 0.812496 | 4.117581e-51 | -8.615850e-47 |
| Msa0668920 | Msa0735780 | 0.823920 | 1.067977e-53 | -8.615850e-47 |
| Msa0668920 | Msa0773630 | 0.805623 | 1.220762e-49 | -8.615850e-47 |
| Msa0668920 | Msa0824450 | 0.803810 | 2.918771e-49 | -8.615850e-47 |
| Msa0668920 | Msa0828970 | 0.801785 | 7.642209e-49 | -8.615850e-47 |
| Msa0668920 | Msa1042880 | 0.803076 | 4.142608e-49 | -8.615850e-47 |
| Msa0668920 | Msa1084530 | 0.815511 | 8.905391e-52 | -8.615850e-47 |
| Msa0668920 | Msa1125820 | 0.815912 | 7.250445e-52 | -8.615850e-47 |
| Msa0668920 | Msa1125990 | 0.815996 | 6.940943e-52 | -8.615850e-47 |
| Msa0668920 | Msa1171290 | 0.811556 | 6.599988e-51 | -8.615850e-47 |
| Msa0668920 | Msa1192570 | 0.820455 | 6.798074e-53 | -8.615850e-47 |
| Msa0668920 | Msa1215870 | 0.804643 | 1.957942e-49 | -8.615850e-47 |
| Msa0668920 | Msa1226520 | 0.804005 | 2.658428e-49 | -8.615850e-47 |
| Msa0668920 | Msa1320670 | 0.807488 | 4.933344e-50 | -8.615850e-47 |
| Msa0668920 | Msa1343180 | 0.804414 | 2.185683e-49 | -8.615850e-47 |
| Msa0213030 | Msa0668920 | 0.817633 | 2.979519e-52 | -8.615850e-47 |
| Msa0481890 | Msa0668920 | 0.812308 | 4.524941e-51 | -8.615850e-47 |
| Msa0269210 | Msa0668920 | 0.802773 | 4.785106e-49 | -8.615850e-47 |
| Msa0343010 | Msa0668920 | 0.804572 | 2.025082e-49 | -8.615850e-47 |
| Msa0483100 | Msa0668920 | 0.800451 | 1.432509e-48 | -8.615850e-47 |
| Msa0567170 | Msa0668920 | 0.810511 | 1.111443e-50 | -8.615850e-47 |
| Msa0590200 | Msa0668920 | 0.837167 | 6.099356e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0668920 | MtrunA17_Chr4g0007641 | 86.688 | 308 | 34 | 2 | 1 | 308 | 1 | 301 | 1.82e-177 | 513 |
| Msa0668920 | MtrunA17_Chr6g0484831 | 71.845 | 309 | 70 | 6 | 1 | 308 | 1 | 293 | 1.58e-143 | 425 |
| Msa0668920 | MtrunA17_Chr5g0406641 | 69.579 | 309 | 78 | 6 | 1 | 308 | 1 | 294 | 6.23e-126 | 380 |
| Msa0668920 | MtrunA17_Chr7g0215341 | 66.667 | 309 | 78 | 6 | 1 | 308 | 1 | 285 | 6.29e-124 | 374 |
| Msa0668920 | MtrunA17_Chr6g0464681 | 50.915 | 328 | 110 | 9 | 1 | 308 | 1 | 297 | 1.83e-82 | 266 |
| Msa0668920 | MtrunA17_Chr6g0486931 | 42.578 | 256 | 129 | 4 | 65 | 308 | 142 | 391 | 9.65e-58 | 200 |
| Msa0668920 | MtrunA17_Chr8g0369361 | 35.547 | 256 | 135 | 6 | 69 | 308 | 9 | 250 | 5.54e-41 | 152 |
| Msa0668920 | MtrunA17_Chr8g0364091 | 44.262 | 183 | 86 | 6 | 137 | 309 | 37 | 213 | 1.50e-39 | 139 |
| Msa0668920 | MtrunA17_Chr5g0427871 | 43.519 | 108 | 52 | 2 | 65 | 163 | 34 | 141 | 2.92e-22 | 90.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0668920 | AT1G69770.1 | 40.206 | 291 | 136 | 9 | 47 | 308 | 17 | 298 | 1.31e-53 | 188 |
| Msa0668920 | AT4G19020.1 | 39.286 | 252 | 125 | 7 | 68 | 308 | 522 | 756 | 1.18e-48 | 175 |
| Msa0668920 | AT4G19020.2 | 39.286 | 252 | 125 | 7 | 68 | 308 | 474 | 708 | 1.39e-48 | 175 |
| Msa0668920 | AT1G80740.1 | 37.634 | 279 | 125 | 7 | 50 | 308 | 5 | 254 | 1.11e-45 | 166 |
Find 64 sgRNAs with CRISPR-Local
Find 284 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTTATTAGATTTGTATTC+TGG | 0.139185 | 4_4:-10243249 | Msa0668920:CDS |
| AGCAGTCTCGCTTTCTATTC+TGG | 0.233443 | 4_4:+10243389 | None:intergenic |
| ATGTCCACTGGCCTTTGTTT+TGG | 0.262234 | 4_4:-10243216 | Msa0668920:CDS |
| TCTACAATTTCAAGTGAATC+TGG | 0.270615 | 4_4:-10243348 | Msa0668920:CDS |
| GTCTGCGGGTGCGGGAGGAT+TGG | 0.352060 | 4_4:-10242739 | Msa0668920:CDS |
| CTAAAATTAAAGAATCTGAT+AGG | 0.352290 | 4_4:-10243278 | Msa0668920:CDS |
| CTTTATTAGATTTGTATTCT+GGG | 0.360910 | 4_4:-10243248 | Msa0668920:CDS |
| TTCAATCTTTACCGTATCTT+CGG | 0.365889 | 4_4:+10243900 | None:intergenic |
| TGTGCGCTTTGTAGTGGTTC+CGG | 0.388720 | 4_4:-10244650 | Msa0668920:intron |
| ATTAAGCAGGTCTGCGGGTG+CGG | 0.398982 | 4_4:-10242748 | Msa0668920:intron |
| GATAATAATGTGGCTGAAGA+AGG | 0.423291 | 4_4:-10243306 | Msa0668920:CDS |
| GGCGTAACGGTGAGGCCAAC+GGG | 0.424194 | 4_4:+10244755 | None:intergenic |
| GAAAGCTGCGCAACGATCTT+CGG | 0.430396 | 4_4:-10244838 | Msa0668920:CDS |
| CCCCATCAACATTCACTTCA+CGG | 0.438946 | 4_4:+10244594 | None:intergenic |
| TTTGCTTCATCGGCCGGAAA+AGG | 0.441551 | 4_4:+10244780 | None:intergenic |
| TTAGATTTGTATTCTGGGTG+TGG | 0.441710 | 4_4:-10243243 | Msa0668920:CDS |
| AATTATCGAAGAAGAAGAAC+TGG | 0.468642 | 4_4:-10244895 | Msa0668920:CDS |
| TGGCGTAACGGTGAGGCCAA+CGG | 0.470112 | 4_4:+10244754 | None:intergenic |
| TTAAGCAGGTCTGCGGGTGC+GGG | 0.476190 | 4_4:-10242747 | Msa0668920:intron |
| CTACAATTTCAAGTGAATCT+GGG | 0.489954 | 4_4:-10243347 | Msa0668920:CDS |
| TACCGTGAAGTGAATGTTGA+TGG | 0.495325 | 4_4:-10244596 | Msa0668920:CDS |
| AGACTATATTGCTGCAATTG+TGG | 0.501513 | 4_4:-10243980 | Msa0668920:CDS |
| CACATTATTATCACTTGCAC+AGG | 0.504256 | 4_4:+10243317 | None:intergenic |
| GGGTGTGGAGCTATGTCCAC+TGG | 0.507514 | 4_4:-10243228 | Msa0668920:CDS |
| GTCTCGCTTTCTATTCTGGA+AGG | 0.523813 | 4_4:+10243393 | None:intergenic |
| TGCAGGTTATCAAGAACCAT+GGG | 0.527796 | 4_4:-10243806 | Msa0668920:intron |
| TTAAAGAATCTGATAGGGAG+TGG | 0.532218 | 4_4:-10243272 | Msa0668920:CDS |
| TAAAATTAAAGAATCTGATA+GGG | 0.534696 | 4_4:-10243277 | Msa0668920:CDS |
| CTCACGCGTTCTTGGCGTAA+CGG | 0.538323 | 4_4:+10244742 | None:intergenic |
| ATTATCACTTGCACAGGCGT+TGG | 0.541418 | 4_4:+10243323 | None:intergenic |
| CTTCACTTTATCATCGTCTC+CGG | 0.543207 | 4_4:+10244631 | None:intergenic |
| GGGATCTCGTTGATGAAAAG+AGG | 0.547769 | 4_4:-10243785 | Msa0668920:CDS |
| AATGTTGTTCAGGGAGAAGA+GGG | 0.552118 | 4_4:-10244009 | Msa0668920:intron |
| GAATGTTGTTCAGGGAGAAG+AGG | 0.555164 | 4_4:-10244010 | Msa0668920:intron |
| ATGCAATTAAGCAGGTCTGC+GGG | 0.564642 | 4_4:-10242753 | Msa0668920:intron |
| AGCAGGTCTGCGGGTGCGGG+AGG | 0.566214 | 4_4:-10242744 | Msa0668920:intron |
| TTCTGTCGAGAAGGAAGCGA+CGG | 0.569022 | 4_4:+10244861 | None:intergenic |
| TGCTGACATTAAGCTTGTCA+CGG | 0.573436 | 4_4:-10243184 | Msa0668920:intron |
| ATCACAATGGATAATTCTAG+TGG | 0.576793 | 4_4:-10242710 | Msa0668920:CDS |
| TCACAATGGATAATTCTAGT+GGG | 0.576950 | 4_4:-10242709 | Msa0668920:CDS |
| GCAGCTTTCTTCTGTCGAGA+AGG | 0.589725 | 4_4:+10244852 | None:intergenic |
| TGATGGGGTCATATATAAGC+TGG | 0.598505 | 4_4:-10244579 | Msa0668920:CDS |
| TTCTTAACTAAACAATCAAG+AGG | 0.600504 | 4_4:+10243732 | None:intergenic |
| ACCGTGAAGTGAATGTTGAT+GGG | 0.606281 | 4_4:-10244595 | Msa0668920:CDS |
| GGATGATAATGCTTATGTCA+AGG | 0.611226 | 4_4:-10244558 | Msa0668920:intron |
| TTTCATCAACGAGATCCCCA+TGG | 0.611934 | 4_4:+10243790 | None:intergenic |
| GGTTGACGACCACGTTTACG+CGG | 0.618906 | 4_4:+10244993 | None:intergenic |
| TCTTAACTAAACAATCAAGA+GGG | 0.622164 | 4_4:+10243733 | None:intergenic |
| CACAATGGATAATTCTAGTG+GGG | 0.624201 | 4_4:-10242708 | Msa0668920:CDS |
| CGGAGACGATGATAAAGTGA+AGG | 0.627325 | 4_4:-10244630 | Msa0668920:CDS |
| GCGTTCTTGGCGTAACGGTG+AGG | 0.627909 | 4_4:+10244747 | None:intergenic |
| GTGCAGGTTATCAAGAACCA+TGG | 0.628529 | 4_4:-10243807 | Msa0668920:intron |
| CAATAGAAGCTCCAAAACAA+AGG | 0.629450 | 4_4:+10243205 | None:intergenic |
| AGCTCCAAAACAAAGGCCAG+TGG | 0.639370 | 4_4:+10243212 | None:intergenic |
| GCAACAATGCCGCGTAAACG+TGG | 0.644048 | 4_4:-10245002 | Msa0668920:exon |
| ATATCATAATATAGATCACA+AGG | 0.651488 | 4_4:+10243564 | None:intergenic |
| AGCTGCGCAACGATCTTCGG+TGG | 0.659584 | 4_4:-10244835 | Msa0668920:CDS |
| GGATTGGCTCGCAATCACAA+TGG | 0.660304 | 4_4:-10242723 | Msa0668920:CDS |
| TTGAGTAGAACGTTTAACGA+CGG | 0.672653 | 4_4:+10244950 | None:intergenic |
| TATGCAATTAAGCAGGTCTG+CGG | 0.683089 | 4_4:-10242754 | Msa0668920:intron |
| CTGTGCAAGTGATAATAATG+TGG | 0.685951 | 4_4:-10243316 | Msa0668920:CDS |
| CCGTGAAGTGAATGTTGATG+GGG | 0.702226 | 4_4:-10244594 | Msa0668920:CDS |
| TCATAATATAGATCACAAGG+AGG | 0.772551 | 4_4:+10243567 | None:intergenic |
| GCAGGTTATCAAGAACCATG+GGG | 0.776501 | 4_4:-10243805 | Msa0668920:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGTATAAAATTGTGTTTTA+AGG | - | chr4_4:10243273-10243292 | Msa0668920:CDS | 15.0% |
| !! | ATGAAATCAAATAAATGAAT+TGG | + | chr4_4:10243487-10243506 | None:intergenic | 15.0% |
| !!! | ATTTATCTGATTTGAAAATA+TGG | - | chr4_4:10243566-10243585 | Msa0668920:CDS | 15.0% |
| !! | AAAAAATCAGTAAATTTACA+TGG | + | chr4_4:10244296-10244315 | None:intergenic | 15.0% |
| !! | TAAAATTAAAGAATCTGATA+GGG | - | chr4_4:10244468-10244487 | Msa0668920:intron | 15.0% |
| !!! | CTTGTAAAGATTTTTTTTTA+CGG | - | chr4_4:10244631-10244650 | Msa0668920:CDS | 15.0% |
| !!! | ATGTATAAAATTGTGTTTTA+AGG | - | chr4_4:10243273-10243292 | Msa0668920:CDS | 15.0% |
| !! | ATGAAATCAAATAAATGAAT+TGG | + | chr4_4:10243487-10243506 | None:intergenic | 15.0% |
| !!! | ATTTATCTGATTTGAAAATA+TGG | - | chr4_4:10243566-10243585 | Msa0668920:CDS | 15.0% |
| !! | AAAAAATCAGTAAATTTACA+TGG | + | chr4_4:10244296-10244315 | None:intergenic | 15.0% |
| !! | TAAAATTAAAGAATCTGATA+GGG | - | chr4_4:10244468-10244487 | Msa0668920:intron | 15.0% |
| !!! | CTTGTAAAGATTTTTTTTTA+CGG | - | chr4_4:10244631-10244650 | Msa0668920:CDS | 15.0% |
| !! | TTTATTAGTTCACAATTTCA+AGG | - | chr4_4:10243051-10243070 | Msa0668920:intron | 20.0% |
| !!! | ATGTTGAAAATTGTGTTTTA+AGG | - | chr4_4:10243348-10243367 | Msa0668920:CDS | 20.0% |
| !! | TAAAATCAAACTCAAAAGAA+AGG | + | chr4_4:10243701-10243720 | None:intergenic | 20.0% |
| !!! | GTAAAATAGTATTCTTTTTC+AGG | + | chr4_4:10243805-10243824 | None:intergenic | 20.0% |
| !!! | GAATTTTATTTGTTGTGTTT+TGG | - | chr4_4:10243865-10243884 | Msa0668920:intron | 20.0% |
| !!! | TTTGTATGATTTTTAGAGTT+TGG | - | chr4_4:10244105-10244124 | Msa0668920:intron | 20.0% |
| !! | TTTCATTTGATATATACTAC+AGG | - | chr4_4:10244135-10244154 | Msa0668920:intron | 20.0% |
| !! | ATATCATAATATAGATCACA+AGG | + | chr4_4:10244184-10244203 | None:intergenic | 20.0% |
| !! | ATGTTTGAAAAAGTTAGATA+TGG | + | chr4_4:10244220-10244239 | None:intergenic | 20.0% |
| !!! | GATTTTTTTAATGTTGATTG+TGG | - | chr4_4:10244308-10244327 | Msa0668920:intron | 20.0% |
| !! | CTAAAATTAAAGAATCTGAT+AGG | - | chr4_4:10244467-10244486 | Msa0668920:intron | 20.0% |
| !! | ACTTTATTAGATTTGTATTC+TGG | - | chr4_4:10244496-10244515 | Msa0668920:intron | 20.0% |
| !! | CTTTATTAGATTTGTATTCT+GGG | - | chr4_4:10244497-10244516 | Msa0668920:intron | 20.0% |
| !! | TTTATTAGTTCACAATTTCA+AGG | - | chr4_4:10243051-10243070 | Msa0668920:intron | 20.0% |
| !!! | ATGTTGAAAATTGTGTTTTA+AGG | - | chr4_4:10243348-10243367 | Msa0668920:CDS | 20.0% |
| !! | TAAAATCAAACTCAAAAGAA+AGG | + | chr4_4:10243701-10243720 | None:intergenic | 20.0% |
| !!! | GTAAAATAGTATTCTTTTTC+AGG | + | chr4_4:10243805-10243824 | None:intergenic | 20.0% |
| !!! | GAATTTTATTTGTTGTGTTT+TGG | - | chr4_4:10243865-10243884 | Msa0668920:intron | 20.0% |
| !!! | TTTGTATGATTTTTAGAGTT+TGG | - | chr4_4:10244105-10244124 | Msa0668920:intron | 20.0% |
| !! | TTTCATTTGATATATACTAC+AGG | - | chr4_4:10244135-10244154 | Msa0668920:intron | 20.0% |
| !! | ATATCATAATATAGATCACA+AGG | + | chr4_4:10244184-10244203 | None:intergenic | 20.0% |
| !! | ATGTTTGAAAAAGTTAGATA+TGG | + | chr4_4:10244220-10244239 | None:intergenic | 20.0% |
| !!! | GATTTTTTTAATGTTGATTG+TGG | - | chr4_4:10244308-10244327 | Msa0668920:intron | 20.0% |
| !! | CTAAAATTAAAGAATCTGAT+AGG | - | chr4_4:10244467-10244486 | Msa0668920:intron | 20.0% |
| !! | ACTTTATTAGATTTGTATTC+TGG | - | chr4_4:10244496-10244515 | Msa0668920:intron | 20.0% |
| !! | CTTTATTAGATTTGTATTCT+GGG | - | chr4_4:10244497-10244516 | Msa0668920:intron | 20.0% |
| !!! | AGCGCTTTTTTTTTTGTTTA+GGG | + | chr4_4:10242707-10242726 | None:intergenic | 25.0% |
| !!! | AAGCGCTTTTTTTTTTGTTT+AGG | + | chr4_4:10242708-10242727 | None:intergenic | 25.0% |
| !! | TCTTCGATAATTTCTTTTAC+AGG | + | chr4_4:10242842-10242861 | None:intergenic | 25.0% |
| ! | TAAGGTTTGTATCTTTGATT+TGG | - | chr4_4:10243291-10243310 | Msa0668920:CDS | 25.0% |
| !! | TGAAATCATAATTTTCAACC+TGG | + | chr4_4:10243389-10243408 | None:intergenic | 25.0% |
| ! | TAAAAACACAATATTCAGCA+TGG | + | chr4_4:10243648-10243667 | None:intergenic | 25.0% |
| !! | ATGCTGAATATTGTGTTTTT+AGG | - | chr4_4:10243647-10243666 | Msa0668920:intron | 25.0% |
| !!! | TGCTGAATATTGTGTTTTTA+GGG | - | chr4_4:10243648-10243667 | Msa0668920:intron | 25.0% |
| ! | TTGATTTATGAATGTTGTTC+AGG | - | chr4_4:10243726-10243745 | Msa0668920:CDS | 25.0% |
| ! | TGATTTATGAATGTTGTTCA+GGG | - | chr4_4:10243727-10243746 | Msa0668920:CDS | 25.0% |
| !!! | TTGGTTTTGTTTATGTGTTT+AGG | - | chr4_4:10243884-10243903 | Msa0668920:intron | 25.0% |
| !!! | TGGTTTTGTTTATGTGTTTA+GGG | - | chr4_4:10243885-10243904 | Msa0668920:intron | 25.0% |
| !! | TTTAGGGTTATTGTTGAATT+TGG | - | chr4_4:10243901-10243920 | Msa0668920:intron | 25.0% |
| ! | TCTTAACTAAACAATCAAGA+GGG | + | chr4_4:10244015-10244034 | None:intergenic | 25.0% |
| ! | TTCTTAACTAAACAATCAAG+AGG | + | chr4_4:10244016-10244035 | None:intergenic | 25.0% |
| !!! | ACTTTTTCAAACATTGACAA+TGG | - | chr4_4:10244226-10244245 | Msa0668920:intron | 25.0% |
| !!! | TAATGTTTTTGACTTTGAAG+AGG | - | chr4_4:10244660-10244679 | Msa0668920:intron | 25.0% |
| ! | AAAATGGTATTACCTTGATT+TGG | + | chr4_4:10244823-10244842 | None:intergenic | 25.0% |
| ! | AAGGTAATAAACTTGGAAAA+TGG | + | chr4_4:10244839-10244858 | None:intergenic | 25.0% |
| !!! | AGCGCTTTTTTTTTTGTTTA+GGG | + | chr4_4:10242707-10242726 | None:intergenic | 25.0% |
| !!! | AAGCGCTTTTTTTTTTGTTT+AGG | + | chr4_4:10242708-10242727 | None:intergenic | 25.0% |
| !! | TCTTCGATAATTTCTTTTAC+AGG | + | chr4_4:10242842-10242861 | None:intergenic | 25.0% |
| ! | TAAGGTTTGTATCTTTGATT+TGG | - | chr4_4:10243291-10243310 | Msa0668920:CDS | 25.0% |
| !! | TGAAATCATAATTTTCAACC+TGG | + | chr4_4:10243389-10243408 | None:intergenic | 25.0% |
| ! | TAAAAACACAATATTCAGCA+TGG | + | chr4_4:10243648-10243667 | None:intergenic | 25.0% |
| !! | ATGCTGAATATTGTGTTTTT+AGG | - | chr4_4:10243647-10243666 | Msa0668920:intron | 25.0% |
| !!! | TGCTGAATATTGTGTTTTTA+GGG | - | chr4_4:10243648-10243667 | Msa0668920:intron | 25.0% |
| ! | TTGATTTATGAATGTTGTTC+AGG | - | chr4_4:10243726-10243745 | Msa0668920:CDS | 25.0% |
| ! | TGATTTATGAATGTTGTTCA+GGG | - | chr4_4:10243727-10243746 | Msa0668920:CDS | 25.0% |
| !!! | TTGGTTTTGTTTATGTGTTT+AGG | - | chr4_4:10243884-10243903 | Msa0668920:intron | 25.0% |
| !!! | TGGTTTTGTTTATGTGTTTA+GGG | - | chr4_4:10243885-10243904 | Msa0668920:intron | 25.0% |
| !! | TTTAGGGTTATTGTTGAATT+TGG | - | chr4_4:10243901-10243920 | Msa0668920:intron | 25.0% |
| ! | TCTTAACTAAACAATCAAGA+GGG | + | chr4_4:10244015-10244034 | None:intergenic | 25.0% |
| ! | TTCTTAACTAAACAATCAAG+AGG | + | chr4_4:10244016-10244035 | None:intergenic | 25.0% |
| !!! | ACTTTTTCAAACATTGACAA+TGG | - | chr4_4:10244226-10244245 | Msa0668920:intron | 25.0% |
| !!! | TAATGTTTTTGACTTTGAAG+AGG | - | chr4_4:10244660-10244679 | Msa0668920:intron | 25.0% |
| ! | AAAATGGTATTACCTTGATT+TGG | + | chr4_4:10244823-10244842 | None:intergenic | 25.0% |
| ! | AAGGTAATAAACTTGGAAAA+TGG | + | chr4_4:10244839-10244858 | None:intergenic | 25.0% |
| ! | TCTTTTACAGGAGATTTCTT+AGG | + | chr4_4:10242830-10242849 | None:intergenic | 30.0% |
| AATTATCGAAGAAGAAGAAC+TGG | - | chr4_4:10242850-10242869 | Msa0668920:intron | 30.0% | |
| TTCTCCGACAAAAAATGAAT+CGG | + | chr4_4:10242945-10242964 | None:intergenic | 30.0% | |
| !! | TTGTATCTTTGATTTGGTGT+TGG | - | chr4_4:10243297-10243316 | Msa0668920:CDS | 30.0% |
| AGGTTTATTTGTTTGATTCC+AGG | - | chr4_4:10243368-10243387 | Msa0668920:CDS | 30.0% | |
| AAGACAAGATATTCTCAACA+TGG | + | chr4_4:10243539-10243558 | None:intergenic | 30.0% | |
| GTTGAGAATATCTTGTCTTA+AGG | - | chr4_4:10243540-10243559 | Msa0668920:CDS | 30.0% | |
| ! | CTTGTTGAGAATGTGTTTTA+GGG | - | chr4_4:10243607-10243626 | Msa0668920:intron | 30.0% |
| ! | AATACTATTTTACTGCTCAG+TGG | - | chr4_4:10243812-10243831 | Msa0668920:intron | 30.0% |
| TTCAATCTTTACCGTATCTT+CGG | + | chr4_4:10243848-10243867 | None:intergenic | 30.0% | |
| TCATAATATAGATCACAAGG+AGG | + | chr4_4:10244181-10244200 | None:intergenic | 30.0% | |
| ! | TCTACAATTTCAAGTGAATC+TGG | - | chr4_4:10244397-10244416 | Msa0668920:intron | 30.0% |
| ! | CTACAATTTCAAGTGAATCT+GGG | - | chr4_4:10244398-10244417 | Msa0668920:intron | 30.0% |
| !! | ATTACCTTGATTTGGAATGA+TGG | + | chr4_4:10244815-10244834 | None:intergenic | 30.0% |
| ATCACAATGGATAATTCTAG+TGG | - | chr4_4:10245035-10245054 | Msa0668920:five_prime_UTR | 30.0% | |
| TCACAATGGATAATTCTAGT+GGG | - | chr4_4:10245036-10245055 | Msa0668920:five_prime_UTR | 30.0% | |
| ! | TCTTTTACAGGAGATTTCTT+AGG | + | chr4_4:10242830-10242849 | None:intergenic | 30.0% |
| AATTATCGAAGAAGAAGAAC+TGG | - | chr4_4:10242850-10242869 | Msa0668920:intron | 30.0% | |
| TTCTCCGACAAAAAATGAAT+CGG | + | chr4_4:10242945-10242964 | None:intergenic | 30.0% | |
| !! | TTGTATCTTTGATTTGGTGT+TGG | - | chr4_4:10243297-10243316 | Msa0668920:CDS | 30.0% |
| AGGTTTATTTGTTTGATTCC+AGG | - | chr4_4:10243368-10243387 | Msa0668920:CDS | 30.0% | |
| AAGACAAGATATTCTCAACA+TGG | + | chr4_4:10243539-10243558 | None:intergenic | 30.0% | |
| GTTGAGAATATCTTGTCTTA+AGG | - | chr4_4:10243540-10243559 | Msa0668920:CDS | 30.0% | |
| ! | CTTGTTGAGAATGTGTTTTA+GGG | - | chr4_4:10243607-10243626 | Msa0668920:intron | 30.0% |
| ! | AATACTATTTTACTGCTCAG+TGG | - | chr4_4:10243812-10243831 | Msa0668920:intron | 30.0% |
| TTCAATCTTTACCGTATCTT+CGG | + | chr4_4:10243848-10243867 | None:intergenic | 30.0% | |
| TCATAATATAGATCACAAGG+AGG | + | chr4_4:10244181-10244200 | None:intergenic | 30.0% | |
| ! | TCTACAATTTCAAGTGAATC+TGG | - | chr4_4:10244397-10244416 | Msa0668920:intron | 30.0% |
| ! | CTACAATTTCAAGTGAATCT+GGG | - | chr4_4:10244398-10244417 | Msa0668920:intron | 30.0% |
| !! | ATTACCTTGATTTGGAATGA+TGG | + | chr4_4:10244815-10244834 | None:intergenic | 30.0% |
| ATCACAATGGATAATTCTAG+TGG | - | chr4_4:10245035-10245054 | Msa0668920:five_prime_UTR | 30.0% | |
| TCACAATGGATAATTCTAGT+GGG | - | chr4_4:10245036-10245055 | Msa0668920:five_prime_UTR | 30.0% | |
| TTGAGTAGAACGTTTAACGA+CGG | + | chr4_4:10242798-10242817 | None:intergenic | 35.0% | |
| ! | GGATGATAATGCTTATGTCA+AGG | - | chr4_4:10243187-10243206 | Msa0668920:CDS | 35.0% |
| CCTAAAACACATTCTCAACA+AGG | + | chr4_4:10243609-10243628 | None:intergenic | 35.0% | |
| ! | CCTTGTTGAGAATGTGTTTT+AGG | - | chr4_4:10243606-10243625 | Msa0668920:intron | 35.0% |
| AGACTATATTGCTGCAATTG+TGG | - | chr4_4:10243765-10243784 | Msa0668920:CDS | 35.0% | |
| CACATTATTATCACTTGCAC+AGG | + | chr4_4:10244431-10244450 | None:intergenic | 35.0% | |
| CTGTGCAAGTGATAATAATG+TGG | - | chr4_4:10244429-10244448 | Msa0668920:intron | 35.0% | |
| GATAATAATGTGGCTGAAGA+AGG | - | chr4_4:10244439-10244458 | Msa0668920:intron | 35.0% | |
| TTAAAGAATCTGATAGGGAG+TGG | - | chr4_4:10244473-10244492 | Msa0668920:intron | 35.0% | |
| TTAGATTTGTATTCTGGGTG+TGG | - | chr4_4:10244502-10244521 | Msa0668920:intron | 35.0% | |
| CAATAGAAGCTCCAAAACAA+AGG | + | chr4_4:10244543-10244562 | None:intergenic | 35.0% | |
| TTAAGCTTGTCACGGTATTT+AGG | - | chr4_4:10244569-10244588 | Msa0668920:CDS | 35.0% | |
| !!! | TGTTTTTGACTTTGAAGAGG+TGG | - | chr4_4:10244663-10244682 | Msa0668920:intron | 35.0% |
| !!! | GTTTTTGACTTTGAAGAGGT+GGG | - | chr4_4:10244664-10244683 | Msa0668920:intron | 35.0% |
| AAAGCCATCATTCCAAATCA+AGG | - | chr4_4:10244808-10244827 | Msa0668920:CDS | 35.0% | |
| CTTCAGCAAGGTAATAAACT+TGG | + | chr4_4:10244846-10244865 | None:intergenic | 35.0% | |
| AGATCTTAAGAGAGCTAAAG+AGG | - | chr4_4:10244864-10244883 | Msa0668920:CDS | 35.0% | |
| CACAATGGATAATTCTAGTG+GGG | - | chr4_4:10245037-10245056 | Msa0668920:five_prime_UTR | 35.0% | |
| TTGAGTAGAACGTTTAACGA+CGG | + | chr4_4:10242798-10242817 | None:intergenic | 35.0% | |
| ! | GGATGATAATGCTTATGTCA+AGG | - | chr4_4:10243187-10243206 | Msa0668920:CDS | 35.0% |
| CCTAAAACACATTCTCAACA+AGG | + | chr4_4:10243609-10243628 | None:intergenic | 35.0% | |
| ! | CCTTGTTGAGAATGTGTTTT+AGG | - | chr4_4:10243606-10243625 | Msa0668920:intron | 35.0% |
| AGACTATATTGCTGCAATTG+TGG | - | chr4_4:10243765-10243784 | Msa0668920:CDS | 35.0% | |
| CACATTATTATCACTTGCAC+AGG | + | chr4_4:10244431-10244450 | None:intergenic | 35.0% | |
| CTGTGCAAGTGATAATAATG+TGG | - | chr4_4:10244429-10244448 | Msa0668920:intron | 35.0% | |
| GATAATAATGTGGCTGAAGA+AGG | - | chr4_4:10244439-10244458 | Msa0668920:intron | 35.0% | |
| TTAAAGAATCTGATAGGGAG+TGG | - | chr4_4:10244473-10244492 | Msa0668920:intron | 35.0% | |
| TTAGATTTGTATTCTGGGTG+TGG | - | chr4_4:10244502-10244521 | Msa0668920:intron | 35.0% | |
| CAATAGAAGCTCCAAAACAA+AGG | + | chr4_4:10244543-10244562 | None:intergenic | 35.0% | |
| TTAAGCTTGTCACGGTATTT+AGG | - | chr4_4:10244569-10244588 | Msa0668920:CDS | 35.0% | |
| !!! | TGTTTTTGACTTTGAAGAGG+TGG | - | chr4_4:10244663-10244682 | Msa0668920:intron | 35.0% |
| !!! | GTTTTTGACTTTGAAGAGGT+GGG | - | chr4_4:10244664-10244683 | Msa0668920:intron | 35.0% |
| AAAGCCATCATTCCAAATCA+AGG | - | chr4_4:10244808-10244827 | Msa0668920:CDS | 35.0% | |
| CTTCAGCAAGGTAATAAACT+TGG | + | chr4_4:10244846-10244865 | None:intergenic | 35.0% | |
| AGATCTTAAGAGAGCTAAAG+AGG | - | chr4_4:10244864-10244883 | Msa0668920:CDS | 35.0% | |
| CACAATGGATAATTCTAGTG+GGG | - | chr4_4:10245037-10245056 | Msa0668920:five_prime_UTR | 35.0% | |
| !!! | GACGCCGATTCATTTTTTGT+CGG | - | chr4_4:10242938-10242957 | Msa0668920:intron | 40.0% |
| ! | TTTTGTCGGAGAACCTTTTC+CGG | - | chr4_4:10242952-10242971 | Msa0668920:intron | 40.0% |
| AACAAAAACTCACGCGTTCT+TGG | + | chr4_4:10243014-10243033 | None:intergenic | 40.0% | |
| CTTCACTTTATCATCGTCTC+CGG | + | chr4_4:10243117-10243136 | None:intergenic | 40.0% | |
| TACCGTGAAGTGAATGTTGA+TGG | - | chr4_4:10243149-10243168 | Msa0668920:intron | 40.0% | |
| ACCGTGAAGTGAATGTTGAT+GGG | - | chr4_4:10243150-10243169 | Msa0668920:intron | 40.0% | |
| TGATGGGGTCATATATAAGC+TGG | - | chr4_4:10243166-10243185 | Msa0668920:intron | 40.0% | |
| AATGTTGTTCAGGGAGAAGA+GGG | - | chr4_4:10243736-10243755 | Msa0668920:CDS | 40.0% | |
| ! | GTTTTACAGAGCCGAAGATA+CGG | - | chr4_4:10243834-10243853 | Msa0668920:intron | 40.0% |
| TGCAGGTTATCAAGAACCAT+GGG | - | chr4_4:10243939-10243958 | Msa0668920:CDS | 40.0% | |
| ! | CAACACAAAGCACTTACATC+AGG | + | chr4_4:10244061-10244080 | None:intergenic | 40.0% |
| GGAAGGTTCTGTATCAATCA+GGG | + | chr4_4:10244338-10244357 | None:intergenic | 40.0% | |
| TGGAAGGTTCTGTATCAATC+AGG | + | chr4_4:10244339-10244358 | None:intergenic | 40.0% | |
| TGCTGACATTAAGCTTGTCA+CGG | - | chr4_4:10244561-10244580 | Msa0668920:CDS | 40.0% | |
| CTCTCTTAAGATCTTCAGCA+AGG | + | chr4_4:10244858-10244877 | None:intergenic | 40.0% | |
| TCTTAAGAGAGCTAAAGAGG+AGG | - | chr4_4:10244867-10244886 | Msa0668920:CDS | 40.0% | |
| ! | AGGAGGATTTGTTCATGTTC+TGG | - | chr4_4:10244884-10244903 | Msa0668920:CDS | 40.0% |
| ! | GGAGGATTTGTTCATGTTCT+GGG | - | chr4_4:10244885-10244904 | Msa0668920:CDS | 40.0% |
| CTCAGAACGAATGACACATT+TGG | + | chr4_4:10244915-10244934 | None:intergenic | 40.0% | |
| TTGTAACCATCCCTTATCCA+GGG | + | chr4_4:10244952-10244971 | None:intergenic | 40.0% | |
| ATTGTAACCATCCCTTATCC+AGG | + | chr4_4:10244953-10244972 | None:intergenic | 40.0% | |
| CTGCTGTTATGCAATTAAGC+AGG | - | chr4_4:10244984-10245003 | Msa0668920:CDS | 40.0% | |
| TATGCAATTAAGCAGGTCTG+CGG | - | chr4_4:10244991-10245010 | Msa0668920:CDS | 40.0% | |
| ! | TAATTCTAGTGGGGTTTTGC+AGG | - | chr4_4:10245046-10245065 | Msa0668920:five_prime_UTR | 40.0% |
| !!! | GACGCCGATTCATTTTTTGT+CGG | - | chr4_4:10242938-10242957 | Msa0668920:intron | 40.0% |
| ! | TTTTGTCGGAGAACCTTTTC+CGG | - | chr4_4:10242952-10242971 | Msa0668920:intron | 40.0% |
| AACAAAAACTCACGCGTTCT+TGG | + | chr4_4:10243014-10243033 | None:intergenic | 40.0% | |
| CTTCACTTTATCATCGTCTC+CGG | + | chr4_4:10243117-10243136 | None:intergenic | 40.0% | |
| TACCGTGAAGTGAATGTTGA+TGG | - | chr4_4:10243149-10243168 | Msa0668920:intron | 40.0% | |
| ACCGTGAAGTGAATGTTGAT+GGG | - | chr4_4:10243150-10243169 | Msa0668920:intron | 40.0% | |
| TGATGGGGTCATATATAAGC+TGG | - | chr4_4:10243166-10243185 | Msa0668920:intron | 40.0% | |
| AATGTTGTTCAGGGAGAAGA+GGG | - | chr4_4:10243736-10243755 | Msa0668920:CDS | 40.0% | |
| ! | GTTTTACAGAGCCGAAGATA+CGG | - | chr4_4:10243834-10243853 | Msa0668920:intron | 40.0% |
| TGCAGGTTATCAAGAACCAT+GGG | - | chr4_4:10243939-10243958 | Msa0668920:CDS | 40.0% | |
| ! | CAACACAAAGCACTTACATC+AGG | + | chr4_4:10244061-10244080 | None:intergenic | 40.0% |
| GGAAGGTTCTGTATCAATCA+GGG | + | chr4_4:10244338-10244357 | None:intergenic | 40.0% | |
| TGGAAGGTTCTGTATCAATC+AGG | + | chr4_4:10244339-10244358 | None:intergenic | 40.0% | |
| TGCTGACATTAAGCTTGTCA+CGG | - | chr4_4:10244561-10244580 | Msa0668920:CDS | 40.0% | |
| CTCTCTTAAGATCTTCAGCA+AGG | + | chr4_4:10244858-10244877 | None:intergenic | 40.0% | |
| TCTTAAGAGAGCTAAAGAGG+AGG | - | chr4_4:10244867-10244886 | Msa0668920:CDS | 40.0% | |
| ! | AGGAGGATTTGTTCATGTTC+TGG | - | chr4_4:10244884-10244903 | Msa0668920:CDS | 40.0% |
| ! | GGAGGATTTGTTCATGTTCT+GGG | - | chr4_4:10244885-10244904 | Msa0668920:CDS | 40.0% |
| CTCAGAACGAATGACACATT+TGG | + | chr4_4:10244915-10244934 | None:intergenic | 40.0% | |
| TTGTAACCATCCCTTATCCA+GGG | + | chr4_4:10244952-10244971 | None:intergenic | 40.0% | |
| ATTGTAACCATCCCTTATCC+AGG | + | chr4_4:10244953-10244972 | None:intergenic | 40.0% | |
| CTGCTGTTATGCAATTAAGC+AGG | - | chr4_4:10244984-10245003 | Msa0668920:CDS | 40.0% | |
| TATGCAATTAAGCAGGTCTG+CGG | - | chr4_4:10244991-10245010 | Msa0668920:CDS | 40.0% | |
| ! | TAATTCTAGTGGGGTTTTGC+AGG | - | chr4_4:10245046-10245065 | Msa0668920:five_prime_UTR | 40.0% |
| !!! | ACGGCGTCATTTTGCTGTTT+CGG | + | chr4_4:10242779-10242798 | None:intergenic | 45.0% |
| !! | CCAACGGGTTTTTGCTTCAT+CGG | + | chr4_4:10242978-10242997 | None:intergenic | 45.0% |
| TACGTTTGTGCGCTTTGTAG+TGG | - | chr4_4:10243089-10243108 | Msa0668920:intron | 45.0% | |
| CGGAGACGATGATAAAGTGA+AGG | - | chr4_4:10243115-10243134 | Msa0668920:intron | 45.0% | |
| CCCCATCAACATTCACTTCA+CGG | + | chr4_4:10243154-10243173 | None:intergenic | 45.0% | |
| CCGTGAAGTGAATGTTGATG+GGG | - | chr4_4:10243151-10243170 | Msa0668920:intron | 45.0% | |
| GAATGTTGTTCAGGGAGAAG+AGG | - | chr4_4:10243735-10243754 | Msa0668920:CDS | 45.0% | |
| GGTGATTTGAATGTGTGTGC+AGG | - | chr4_4:10243922-10243941 | Msa0668920:CDS | 45.0% | |
| GTGCAGGTTATCAAGAACCA+TGG | - | chr4_4:10243938-10243957 | Msa0668920:CDS | 45.0% | |
| GCAGGTTATCAAGAACCATG+GGG | - | chr4_4:10243940-10243959 | Msa0668920:CDS | 45.0% | |
| TTTCATCAACGAGATCCCCA+TGG | + | chr4_4:10243958-10243977 | None:intergenic | 45.0% | |
| ! | GGGATCTCGTTGATGAAAAG+AGG | - | chr4_4:10243960-10243979 | Msa0668920:CDS | 45.0% |
| GTCTCGCTTTCTATTCTGGA+AGG | + | chr4_4:10244355-10244374 | None:intergenic | 45.0% | |
| AGCAGTCTCGCTTTCTATTC+TGG | + | chr4_4:10244359-10244378 | None:intergenic | 45.0% | |
| ATTATCACTTGCACAGGCGT+TGG | + | chr4_4:10244425-10244444 | None:intergenic | 45.0% | |
| !!! | ATGTCCACTGGCCTTTGTTT+TGG | - | chr4_4:10244529-10244548 | Msa0668920:intron | 45.0% |
| ! | CATTCGTTCTGAGCCAGAAA+TGG | - | chr4_4:10244922-10244941 | Msa0668920:CDS | 45.0% |
| AAATGGTCTGCCCTGGATAA+GGG | - | chr4_4:10244939-10244958 | Msa0668920:CDS | 45.0% | |
| ATGCAATTAAGCAGGTCTGC+GGG | - | chr4_4:10244992-10245011 | Msa0668920:CDS | 45.0% | |
| !!! | ACGGCGTCATTTTGCTGTTT+CGG | + | chr4_4:10242779-10242798 | None:intergenic | 45.0% |
| !! | CCAACGGGTTTTTGCTTCAT+CGG | + | chr4_4:10242978-10242997 | None:intergenic | 45.0% |
| TACGTTTGTGCGCTTTGTAG+TGG | - | chr4_4:10243089-10243108 | Msa0668920:intron | 45.0% | |
| CGGAGACGATGATAAAGTGA+AGG | - | chr4_4:10243115-10243134 | Msa0668920:intron | 45.0% | |
| CCCCATCAACATTCACTTCA+CGG | + | chr4_4:10243154-10243173 | None:intergenic | 45.0% | |
| CCGTGAAGTGAATGTTGATG+GGG | - | chr4_4:10243151-10243170 | Msa0668920:intron | 45.0% | |
| GAATGTTGTTCAGGGAGAAG+AGG | - | chr4_4:10243735-10243754 | Msa0668920:CDS | 45.0% | |
| GGTGATTTGAATGTGTGTGC+AGG | - | chr4_4:10243922-10243941 | Msa0668920:CDS | 45.0% | |
| GTGCAGGTTATCAAGAACCA+TGG | - | chr4_4:10243938-10243957 | Msa0668920:CDS | 45.0% | |
| GCAGGTTATCAAGAACCATG+GGG | - | chr4_4:10243940-10243959 | Msa0668920:CDS | 45.0% | |
| TTTCATCAACGAGATCCCCA+TGG | + | chr4_4:10243958-10243977 | None:intergenic | 45.0% | |
| ! | GGGATCTCGTTGATGAAAAG+AGG | - | chr4_4:10243960-10243979 | Msa0668920:CDS | 45.0% |
| GTCTCGCTTTCTATTCTGGA+AGG | + | chr4_4:10244355-10244374 | None:intergenic | 45.0% | |
| AGCAGTCTCGCTTTCTATTC+TGG | + | chr4_4:10244359-10244378 | None:intergenic | 45.0% | |
| ATTATCACTTGCACAGGCGT+TGG | + | chr4_4:10244425-10244444 | None:intergenic | 45.0% | |
| !!! | ATGTCCACTGGCCTTTGTTT+TGG | - | chr4_4:10244529-10244548 | Msa0668920:intron | 45.0% |
| ! | CATTCGTTCTGAGCCAGAAA+TGG | - | chr4_4:10244922-10244941 | Msa0668920:CDS | 45.0% |
| AAATGGTCTGCCCTGGATAA+GGG | - | chr4_4:10244939-10244958 | Msa0668920:CDS | 45.0% | |
| ATGCAATTAAGCAGGTCTGC+GGG | - | chr4_4:10244992-10245011 | Msa0668920:CDS | 45.0% | |
| !!! | GCGTCATTTTGCTGTTTCGG+TGG | + | chr4_4:10242776-10242795 | None:intergenic | 50.0% |
| TTCTGTCGAGAAGGAAGCGA+CGG | + | chr4_4:10242887-10242906 | None:intergenic | 50.0% | |
| GCAGCTTTCTTCTGTCGAGA+AGG | + | chr4_4:10242896-10242915 | None:intergenic | 50.0% | |
| GAAAGCTGCGCAACGATCTT+CGG | - | chr4_4:10242907-10242926 | Msa0668920:intron | 50.0% | |
| TTTGCTTCATCGGCCGGAAA+AGG | + | chr4_4:10242968-10242987 | None:intergenic | 50.0% | |
| CCGATGAAGCAAAAACCCGT+TGG | - | chr4_4:10242975-10242994 | Msa0668920:intron | 50.0% | |
| TGTGCGCTTTGTAGTGGTTC+CGG | - | chr4_4:10243095-10243114 | Msa0668920:intron | 50.0% | |
| AGCTCCAAAACAAAGGCCAG+TGG | + | chr4_4:10244536-10244555 | None:intergenic | 50.0% | |
| TATCCAGGGCAGACCATTTC+TGG | + | chr4_4:10244938-10244957 | None:intergenic | 50.0% | |
| GAAATGGTCTGCCCTGGATA+AGG | - | chr4_4:10244938-10244957 | Msa0668920:CDS | 50.0% | |
| !! | GGATTGGCTCGCAATCACAA+TGG | - | chr4_4:10245022-10245041 | Msa0668920:five_prime_UTR | 50.0% |
| !!! | GCGTCATTTTGCTGTTTCGG+TGG | + | chr4_4:10242776-10242795 | None:intergenic | 50.0% |
| TTCTGTCGAGAAGGAAGCGA+CGG | + | chr4_4:10242887-10242906 | None:intergenic | 50.0% | |
| GCAGCTTTCTTCTGTCGAGA+AGG | + | chr4_4:10242896-10242915 | None:intergenic | 50.0% | |
| GAAAGCTGCGCAACGATCTT+CGG | - | chr4_4:10242907-10242926 | Msa0668920:intron | 50.0% | |
| TTTGCTTCATCGGCCGGAAA+AGG | + | chr4_4:10242968-10242987 | None:intergenic | 50.0% | |
| CCGATGAAGCAAAAACCCGT+TGG | - | chr4_4:10242975-10242994 | Msa0668920:intron | 50.0% | |
| TGTGCGCTTTGTAGTGGTTC+CGG | - | chr4_4:10243095-10243114 | Msa0668920:intron | 50.0% | |
| AGCTCCAAAACAAAGGCCAG+TGG | + | chr4_4:10244536-10244555 | None:intergenic | 50.0% | |
| TATCCAGGGCAGACCATTTC+TGG | + | chr4_4:10244938-10244957 | None:intergenic | 50.0% | |
| GAAATGGTCTGCCCTGGATA+AGG | - | chr4_4:10244938-10244957 | Msa0668920:CDS | 50.0% | |
| !! | GGATTGGCTCGCAATCACAA+TGG | - | chr4_4:10245022-10245041 | Msa0668920:five_prime_UTR | 50.0% |
| GCAACAATGCCGCGTAAACG+TGG | - | chr4_4:10242743-10242762 | Msa0668920:intron | 55.0% | |
| GGTTGACGACCACGTTTACG+CGG | + | chr4_4:10242755-10242774 | None:intergenic | 55.0% | |
| ! | CGGGTTTTTGCTTCATCGGC+CGG | + | chr4_4:10242974-10242993 | None:intergenic | 55.0% |
| CTCACGCGTTCTTGGCGTAA+CGG | + | chr4_4:10243006-10243025 | None:intergenic | 55.0% | |
| !! | GACTTTGAAGAGGTGGGCTG+TGG | - | chr4_4:10244670-10244689 | Msa0668920:intron | 55.0% |
| ATTAAGCAGGTCTGCGGGTG+CGG | - | chr4_4:10244997-10245016 | Msa0668920:CDS | 55.0% | |
| GCAACAATGCCGCGTAAACG+TGG | - | chr4_4:10242743-10242762 | Msa0668920:intron | 55.0% | |
| GGTTGACGACCACGTTTACG+CGG | + | chr4_4:10242755-10242774 | None:intergenic | 55.0% | |
| ! | CGGGTTTTTGCTTCATCGGC+CGG | + | chr4_4:10242974-10242993 | None:intergenic | 55.0% |
| CTCACGCGTTCTTGGCGTAA+CGG | + | chr4_4:10243006-10243025 | None:intergenic | 55.0% | |
| !! | GACTTTGAAGAGGTGGGCTG+TGG | - | chr4_4:10244670-10244689 | Msa0668920:intron | 55.0% |
| ATTAAGCAGGTCTGCGGGTG+CGG | - | chr4_4:10244997-10245016 | Msa0668920:CDS | 55.0% | |
| AGCTGCGCAACGATCTTCGG+TGG | - | chr4_4:10242910-10242929 | Msa0668920:intron | 60.0% | |
| TGGCGTAACGGTGAGGCCAA+CGG | + | chr4_4:10242994-10243013 | None:intergenic | 60.0% | |
| GCGTTCTTGGCGTAACGGTG+AGG | + | chr4_4:10243001-10243020 | None:intergenic | 60.0% | |
| GGGTGTGGAGCTATGTCCAC+TGG | - | chr4_4:10244517-10244536 | Msa0668920:intron | 60.0% | |
| GAGCCAGAAATGGTCTGCCC+TGG | - | chr4_4:10244932-10244951 | Msa0668920:CDS | 60.0% | |
| GGTCTGCCCTGGATAAGGGA+TGG | - | chr4_4:10244943-10244962 | Msa0668920:CDS | 60.0% | |
| TTAAGCAGGTCTGCGGGTGC+GGG | - | chr4_4:10244998-10245017 | Msa0668920:CDS | 60.0% | |
| AGCTGCGCAACGATCTTCGG+TGG | - | chr4_4:10242910-10242929 | Msa0668920:intron | 60.0% | |
| TGGCGTAACGGTGAGGCCAA+CGG | + | chr4_4:10242994-10243013 | None:intergenic | 60.0% | |
| GCGTTCTTGGCGTAACGGTG+AGG | + | chr4_4:10243001-10243020 | None:intergenic | 60.0% | |
| GGGTGTGGAGCTATGTCCAC+TGG | - | chr4_4:10244517-10244536 | Msa0668920:intron | 60.0% | |
| GAGCCAGAAATGGTCTGCCC+TGG | - | chr4_4:10244932-10244951 | Msa0668920:CDS | 60.0% | |
| GGTCTGCCCTGGATAAGGGA+TGG | - | chr4_4:10244943-10244962 | Msa0668920:CDS | 60.0% | |
| TTAAGCAGGTCTGCGGGTGC+GGG | - | chr4_4:10244998-10245017 | Msa0668920:CDS | 60.0% | |
| GGCGTAACGGTGAGGCCAAC+GGG | + | chr4_4:10242993-10243012 | None:intergenic | 65.0% | |
| GGCGTAACGGTGAGGCCAAC+GGG | + | chr4_4:10242993-10243012 | None:intergenic | 65.0% | |
| GTCTGCGGGTGCGGGAGGAT+TGG | - | chr4_4:10245006-10245025 | Msa0668920:exon | 70.0% | |
| GTCTGCGGGTGCGGGAGGAT+TGG | - | chr4_4:10245006-10245025 | Msa0668920:exon | 70.0% | |
| AGCAGGTCTGCGGGTGCGGG+AGG | - | chr4_4:10245001-10245020 | Msa0668920:exon | 75.0% | |
| AGCAGGTCTGCGGGTGCGGG+AGG | - | chr4_4:10245001-10245020 | Msa0668920:exon | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 10242693 | 10245074 | 10242693 | ID=Msa0668920;Name=Msa0668920 |
| chr4_4 | mRNA | 10242693 | 10245074 | 10242693 | ID=Msa0668920-mRNA-1;Parent=Msa0668920;Name=Msa0668920-mRNA-1;_AED=0.30;_eAED=0.30;_QI=56|0.83|0.85|0.85|0.83|0.85|7|0|331 |
| chr4_4 | exon | 10242693 | 10242761 | 10242693 | ID=Msa0668920-mRNA-1:exon:3136;Parent=Msa0668920-mRNA-1 |
| chr4_4 | exon | 10243185 | 10243417 | 10243185 | ID=Msa0668920-mRNA-1:exon:3135;Parent=Msa0668920-mRNA-1 |
| chr4_4 | exon | 10243520 | 10243610 | 10243520 | ID=Msa0668920-mRNA-1:exon:3134;Parent=Msa0668920-mRNA-1 |
| chr4_4 | exon | 10243704 | 10243823 | 10243704 | ID=Msa0668920-mRNA-1:exon:3133;Parent=Msa0668920-mRNA-1 |
| chr4_4 | exon | 10243912 | 10244019 | 10243912 | ID=Msa0668920-mRNA-1:exon:3132;Parent=Msa0668920-mRNA-1 |
| chr4_4 | exon | 10244559 | 10244658 | 10244559 | ID=Msa0668920-mRNA-1:exon:3131;Parent=Msa0668920-mRNA-1 |
| chr4_4 | exon | 10244747 | 10245074 | 10244747 | ID=Msa0668920-mRNA-1:exon:3130;Parent=Msa0668920-mRNA-1 |
| chr4_4 | five_prime_UTR | 10245019 | 10245074 | 10245019 | ID=Msa0668920-mRNA-1:five_prime_utr;Parent=Msa0668920-mRNA-1 |
| chr4_4 | CDS | 10244747 | 10245018 | 10244747 | ID=Msa0668920-mRNA-1:cds;Parent=Msa0668920-mRNA-1 |
| chr4_4 | CDS | 10244559 | 10244658 | 10244559 | ID=Msa0668920-mRNA-1:cds;Parent=Msa0668920-mRNA-1 |
| chr4_4 | CDS | 10243912 | 10244019 | 10243912 | ID=Msa0668920-mRNA-1:cds;Parent=Msa0668920-mRNA-1 |
| chr4_4 | CDS | 10243704 | 10243823 | 10243704 | ID=Msa0668920-mRNA-1:cds;Parent=Msa0668920-mRNA-1 |
| chr4_4 | CDS | 10243520 | 10243610 | 10243520 | ID=Msa0668920-mRNA-1:cds;Parent=Msa0668920-mRNA-1 |
| chr4_4 | CDS | 10243185 | 10243417 | 10243185 | ID=Msa0668920-mRNA-1:cds;Parent=Msa0668920-mRNA-1 |
| chr4_4 | CDS | 10242693 | 10242761 | 10242693 | ID=Msa0668920-mRNA-1:cds;Parent=Msa0668920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
