Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684350 | XP_013456162.1 | 100.000 | 98 | 0 | 0 | 1 | 98 | 1 | 98 | 6.43e-67 | 206 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684350 | sp|P83941|ELOC_RAT | 53.261 | 92 | 41 | 1 | 7 | 96 | 19 | 110 | 2.18e-27 | 99.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684350 | I3SR24 | 100.000 | 98 | 0 | 0 | 1 | 98 | 1 | 98 | 3.07e-67 | 206 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010020 | Msa0684350 | 0.802110 | 6.553313e-49 | -8.615850e-47 |
| Msa0050760 | Msa0684350 | 0.807986 | 3.866860e-50 | -8.615850e-47 |
| Msa0068430 | Msa0684350 | 0.825820 | 3.804556e-54 | -8.615850e-47 |
| Msa0097990 | Msa0684350 | 0.803561 | 3.287514e-49 | -8.615850e-47 |
| Msa0120340 | Msa0684350 | 0.813217 | 2.861820e-51 | -8.615850e-47 |
| Msa0603540 | Msa0684350 | 0.906538 | 1.333769e-80 | -8.615850e-47 |
| Msa0621650 | Msa0684350 | 0.803331 | 3.668651e-49 | -8.615850e-47 |
| Msa0628290 | Msa0684350 | 0.800274 | 1.556616e-48 | -8.615850e-47 |
| Msa0644840 | Msa0684350 | 0.885989 | 5.050473e-72 | -8.615850e-47 |
| Msa0684350 | Msa0899230 | 0.818096 | 2.343051e-52 | -8.615850e-47 |
| Msa0684350 | Msa0908170 | 0.801666 | 8.083318e-49 | -8.615850e-47 |
| Msa0684350 | Msa0960160 | 0.809879 | 1.521302e-50 | -8.615850e-47 |
| Msa0684350 | Msa1201560 | 0.800495 | 1.403343e-48 | -8.615850e-47 |
| Msa0684350 | Msa1440600 | 0.807946 | 3.943415e-50 | -8.615850e-47 |
| Msa0159770 | Msa0684350 | 0.804628 | 1.972159e-49 | -8.615850e-47 |
| Msa0577220 | Msa0684350 | 0.809544 | 1.795800e-50 | -8.615850e-47 |
| Msa0599580 | Msa0684350 | 0.802907 | 4.489310e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684350 | MtrunA17_Chr4g0032221 | 100.000 | 98 | 0 | 0 | 1 | 98 | 1 | 98 | 5.92e-71 | 206 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0684350 | AT5G59140.1 | 76.596 | 94 | 22 | 0 | 5 | 98 | 3 | 96 | 5.05e-51 | 155 |
Find 29 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAACTGTTGCTTTGTTTA+TGG | 0.163438 | 4_4:+47695681 | Msa0684350:three_prime_UTR |
| CATTTGATTACACAGATTAT+AGG | 0.253948 | 4_4:-47695766 | None:intergenic |
| CGCTCAAGTATGTAGGTAAT+TGG | 0.304728 | 4_4:-47695510 | None:intergenic |
| TTGTGTTCTTTGAATCGTTC+TGG | 0.310300 | 4_4:-47694483 | None:intergenic |
| CACAGATTATAGGTATATTC+TGG | 0.319779 | 4_4:-47695756 | None:intergenic |
| TGTAATTCTGTTTCGCTAGT+TGG | 0.323700 | 4_4:+47695842 | Msa0684350:three_prime_UTR |
| AGAGTTAATTCCGGTTCAAT+AGG | 0.360441 | 4_4:-47695470 | None:intergenic |
| TGATATGTTAACAATTTGTT+TGG | 0.381399 | 4_4:+47695942 | Msa0684350:three_prime_UTR |
| CGCAACATGCTAACCTCTCC+AGG | 0.421886 | 4_4:+47694607 | Msa0684350:CDS |
| CCGTTGTACACTAATATTTG+CGG | 0.432210 | 4_4:+47695730 | Msa0684350:three_prime_UTR |
| CAGAGAGTTTCCTATTGAAC+CGG | 0.447017 | 4_4:+47695460 | Msa0684350:CDS |
| ACAAATCTTCTCAAGAATAG+TGG | 0.454935 | 4_4:-47694807 | None:intergenic |
| AATCTAGACATGCATCAATC+AGG | 0.461698 | 4_4:-47695815 | None:intergenic |
| ATTAACTCCAGAGTTAATTC+CGG | 0.493798 | 4_4:-47695479 | None:intergenic |
| AGAATAGTGGAACTAATCTC+AGG | 0.494240 | 4_4:-47694794 | None:intergenic |
| TATTGAACCGGAATTAACTC+TGG | 0.503972 | 4_4:+47695472 | Msa0684350:CDS |
| ATTAACTCTGGAGTTAATGA+TGG | 0.516802 | 4_4:+47695484 | Msa0684350:CDS |
| AAGAAAAGAAAAGATGAAGA+AGG | 0.522038 | 4_4:+47694504 | Msa0684350:exon |
| ATTGGCATCTTGAATTCGCT+AGG | 0.545787 | 4_4:+47694840 | Msa0684350:CDS |
| CGTTGACAAAGAAGCTGCCA+TGG | 0.556586 | 4_4:+47694570 | Msa0684350:CDS |
| AGAGGTTAGCATGTTGCGAA+TGG | 0.577623 | 4_4:-47694602 | None:intergenic |
| ACTATGAACCTTTGGGAAGT+CGG | 0.582522 | 4_4:-47695535 | None:intergenic |
| GTCGGTACGCTCAAGTATGT+AGG | 0.606043 | 4_4:-47695517 | None:intergenic |
| GTGAAACTGATCAGTTCCGA+TGG | 0.617937 | 4_4:+47694535 | Msa0684350:CDS |
| AACAAAGTATGATCAACTGA+CGG | 0.642742 | 4_4:-47695867 | None:intergenic |
| TGAGCGTACCGACTTCCCAA+AGG | 0.647427 | 4_4:+47695527 | Msa0684350:exon |
| GCGAATGGTTTGTGAAACCA+TGG | 0.671918 | 4_4:-47694587 | None:intergenic |
| AACGACGAATTCGAATCCAT+CGG | 0.681941 | 4_4:-47694551 | None:intergenic |
| CCGCAAATATTAGTGTACAA+CGG | 0.694214 | 4_4:-47695730 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAACACAAATAAAATTGA+GGG | - | chr4_4:47695392-47695411 | None:intergenic | 15.0% |
| !! | AAATAACACAAATAAAATTG+AGG | - | chr4_4:47695393-47695412 | None:intergenic | 15.0% |
| !! | TTGTGAAAAAATGTTTAATT+TGG | + | chr4_4:47695975-47695994 | Msa0684350:three_prime_UTR | 15.0% |
| !! | AATAACACAAATAAAATTGA+GGG | - | chr4_4:47695392-47695411 | None:intergenic | 15.0% |
| !! | AAATAACACAAATAAAATTG+AGG | - | chr4_4:47695393-47695412 | None:intergenic | 15.0% |
| !! | TTGTGAAAAAATGTTTAATT+TGG | + | chr4_4:47695975-47695994 | Msa0684350:three_prime_UTR | 15.0% |
| !! | CTAATCGAAAAACTATAAAA+AGG | - | chr4_4:47694659-47694678 | None:intergenic | 20.0% |
| !! | TTAGCGTTAATTCATATATA+AGG | + | chr4_4:47694697-47694716 | Msa0684350:intron | 20.0% |
| !!! | AGATTTGTCAGTATTTTTAT+TGG | + | chr4_4:47694822-47694841 | Msa0684350:CDS | 20.0% |
| !! | TTTCATGTTAAAATTGCAAT+TGG | + | chr4_4:47694879-47694898 | Msa0684350:intron | 20.0% |
| !!! | AAAACTTTTTTTGAGCTTAA+AGG | - | chr4_4:47695021-47695040 | None:intergenic | 20.0% |
| !! | TTCTCTTCATTAATATTGTA+GGG | + | chr4_4:47695557-47695576 | Msa0684350:intron | 20.0% |
| !!! | TGATATGTTAACAATTTGTT+TGG | + | chr4_4:47695942-47695961 | Msa0684350:three_prime_UTR | 20.0% |
| !! | CTAATCGAAAAACTATAAAA+AGG | - | chr4_4:47694659-47694678 | None:intergenic | 20.0% |
| !! | TTAGCGTTAATTCATATATA+AGG | + | chr4_4:47694697-47694716 | Msa0684350:intron | 20.0% |
| !!! | AGATTTGTCAGTATTTTTAT+TGG | + | chr4_4:47694822-47694841 | Msa0684350:CDS | 20.0% |
| !! | TTTCATGTTAAAATTGCAAT+TGG | + | chr4_4:47694879-47694898 | Msa0684350:intron | 20.0% |
| !!! | AAAACTTTTTTTGAGCTTAA+AGG | - | chr4_4:47695021-47695040 | None:intergenic | 20.0% |
| !! | TTCTCTTCATTAATATTGTA+GGG | + | chr4_4:47695557-47695576 | Msa0684350:intron | 20.0% |
| !!! | TGATATGTTAACAATTTGTT+TGG | + | chr4_4:47695942-47695961 | Msa0684350:three_prime_UTR | 20.0% |
| ! | AAGAAAAGAAAAGATGAAGA+AGG | + | chr4_4:47694504-47694523 | Msa0684350:exon | 25.0% |
| !!! | TTTTTCGATTAGTGCAATTA+GGG | + | chr4_4:47694667-47694686 | Msa0684350:intron | 25.0% |
| !!! | ATGTGATTTGTTCTTTGTTA+GGG | + | chr4_4:47694735-47694754 | Msa0684350:intron | 25.0% |
| ! | ATTGAAATCTGAATTGCAAT+TGG | + | chr4_4:47694962-47694981 | Msa0684350:intron | 25.0% |
| ! | AGATGAACAATGAAAATGTT+TGG | + | chr4_4:47694986-47695005 | Msa0684350:intron | 25.0% |
| !! | GGTATTATAAAATGATGATG+TGG | - | chr4_4:47695281-47695300 | None:intergenic | 25.0% |
| !!! | CAAAAGTTTGTTTTGGATAT+TGG | + | chr4_4:47695329-47695348 | Msa0684350:intron | 25.0% |
| ! | GTTCTCTTCATTAATATTGT+AGG | + | chr4_4:47695556-47695575 | Msa0684350:intron | 25.0% |
| ! | CATTTGATTACACAGATTAT+AGG | - | chr4_4:47695769-47695788 | None:intergenic | 25.0% |
| ! | AAGAAAAGAAAAGATGAAGA+AGG | + | chr4_4:47694504-47694523 | Msa0684350:exon | 25.0% |
| !!! | TTTTTCGATTAGTGCAATTA+GGG | + | chr4_4:47694667-47694686 | Msa0684350:intron | 25.0% |
| !!! | ATGTGATTTGTTCTTTGTTA+GGG | + | chr4_4:47694735-47694754 | Msa0684350:intron | 25.0% |
| ! | ATTGAAATCTGAATTGCAAT+TGG | + | chr4_4:47694962-47694981 | Msa0684350:intron | 25.0% |
| ! | AGATGAACAATGAAAATGTT+TGG | + | chr4_4:47694986-47695005 | Msa0684350:intron | 25.0% |
| !! | GGTATTATAAAATGATGATG+TGG | - | chr4_4:47695281-47695300 | None:intergenic | 25.0% |
| !!! | CAAAAGTTTGTTTTGGATAT+TGG | + | chr4_4:47695329-47695348 | Msa0684350:intron | 25.0% |
| ! | GTTCTCTTCATTAATATTGT+AGG | + | chr4_4:47695556-47695575 | Msa0684350:intron | 25.0% |
| ! | CATTTGATTACACAGATTAT+AGG | - | chr4_4:47695769-47695788 | None:intergenic | 25.0% |
| TAAAAAGGTAAAGTGATCGA+CGG | - | chr4_4:47694644-47694663 | None:intergenic | 30.0% | |
| !! | GTTTTTCGATTAGTGCAATT+AGG | + | chr4_4:47694666-47694685 | Msa0684350:intron | 30.0% |
| !! | GATGTGATTTGTTCTTTGTT+AGG | + | chr4_4:47694734-47694753 | Msa0684350:intron | 30.0% |
| ACAAATCTTCTCAAGAATAG+TGG | - | chr4_4:47694810-47694829 | None:intergenic | 30.0% | |
| ! | TTGCAAAAAGTGTATGAATG+TGG | - | chr4_4:47694938-47694957 | None:intergenic | 30.0% |
| TAATTGTTGTACAGTTCACA+AGG | - | chr4_4:47695064-47695083 | None:intergenic | 30.0% | |
| AGTGTAAACTAAAGATGGTA+AGG | - | chr4_4:47695217-47695236 | None:intergenic | 30.0% | |
| !! | ATAGTCGCAAAAGTTTGTTT+TGG | + | chr4_4:47695322-47695341 | Msa0684350:intron | 30.0% |
| !!! | GTTTATGTTGTTTTTGCTAG+TGG | + | chr4_4:47695431-47695450 | Msa0684350:intron | 30.0% |
| ATTAACTCCAGAGTTAATTC+CGG | - | chr4_4:47695482-47695501 | None:intergenic | 30.0% | |
| !! | ATTAACTCTGGAGTTAATGA+TGG | + | chr4_4:47695484-47695503 | Msa0684350:CDS | 30.0% |
| !! | AGAAACTGTTGCTTTGTTTA+TGG | + | chr4_4:47695681-47695700 | Msa0684350:three_prime_UTR | 30.0% |
| CACAGATTATAGGTATATTC+TGG | - | chr4_4:47695759-47695778 | None:intergenic | 30.0% | |
| AACAAAGTATGATCAACTGA+CGG | - | chr4_4:47695870-47695889 | None:intergenic | 30.0% | |
| TAAAAAGGTAAAGTGATCGA+CGG | - | chr4_4:47694644-47694663 | None:intergenic | 30.0% | |
| !! | GTTTTTCGATTAGTGCAATT+AGG | + | chr4_4:47694666-47694685 | Msa0684350:intron | 30.0% |
| !! | GATGTGATTTGTTCTTTGTT+AGG | + | chr4_4:47694734-47694753 | Msa0684350:intron | 30.0% |
| ACAAATCTTCTCAAGAATAG+TGG | - | chr4_4:47694810-47694829 | None:intergenic | 30.0% | |
| ! | TTGCAAAAAGTGTATGAATG+TGG | - | chr4_4:47694938-47694957 | None:intergenic | 30.0% |
| TAATTGTTGTACAGTTCACA+AGG | - | chr4_4:47695064-47695083 | None:intergenic | 30.0% | |
| AGTGTAAACTAAAGATGGTA+AGG | - | chr4_4:47695217-47695236 | None:intergenic | 30.0% | |
| !! | ATAGTCGCAAAAGTTTGTTT+TGG | + | chr4_4:47695322-47695341 | Msa0684350:intron | 30.0% |
| !!! | GTTTATGTTGTTTTTGCTAG+TGG | + | chr4_4:47695431-47695450 | Msa0684350:intron | 30.0% |
| ATTAACTCCAGAGTTAATTC+CGG | - | chr4_4:47695482-47695501 | None:intergenic | 30.0% | |
| !! | ATTAACTCTGGAGTTAATGA+TGG | + | chr4_4:47695484-47695503 | Msa0684350:CDS | 30.0% |
| !! | AGAAACTGTTGCTTTGTTTA+TGG | + | chr4_4:47695681-47695700 | Msa0684350:three_prime_UTR | 30.0% |
| CACAGATTATAGGTATATTC+TGG | - | chr4_4:47695759-47695778 | None:intergenic | 30.0% | |
| AACAAAGTATGATCAACTGA+CGG | - | chr4_4:47695870-47695889 | None:intergenic | 30.0% | |
| TTGTGTTCTTTGAATCGTTC+TGG | - | chr4_4:47694486-47694505 | None:intergenic | 35.0% | |
| GGAAAAAAAAAAACCTGGAG+AGG | - | chr4_4:47694623-47694642 | None:intergenic | 35.0% | |
| TCGACGGAAAAAAAAAAACC+TGG | - | chr4_4:47694628-47694647 | None:intergenic | 35.0% | |
| ! | AGAATAGTGGAACTAATCTC+AGG | - | chr4_4:47694797-47694816 | None:intergenic | 35.0% |
| GGTCAAGTGTAAACTAAAGA+TGG | - | chr4_4:47695222-47695241 | None:intergenic | 35.0% | |
| !!! | TGTTGTTTTTGCTAGTGGAA+AGG | + | chr4_4:47695436-47695455 | Msa0684350:intron | 35.0% |
| AGAGTTAATTCCGGTTCAAT+AGG | - | chr4_4:47695473-47695492 | None:intergenic | 35.0% | |
| TATTGAACCGGAATTAACTC+TGG | + | chr4_4:47695472-47695491 | Msa0684350:CDS | 35.0% | |
| GAAGAGAACTATGAACCTTT+GGG | - | chr4_4:47695545-47695564 | None:intergenic | 35.0% | |
| TGAAGAGAACTATGAACCTT+TGG | - | chr4_4:47695546-47695565 | None:intergenic | 35.0% | |
| CCGCAAATATTAGTGTACAA+CGG | - | chr4_4:47695733-47695752 | None:intergenic | 35.0% | |
| CCGTTGTACACTAATATTTG+CGG | + | chr4_4:47695730-47695749 | Msa0684350:three_prime_UTR | 35.0% | |
| AATCTAGACATGCATCAATC+AGG | - | chr4_4:47695818-47695837 | None:intergenic | 35.0% | |
| TGTAATTCTGTTTCGCTAGT+TGG | + | chr4_4:47695842-47695861 | Msa0684350:three_prime_UTR | 35.0% | |
| TTGTGTTCTTTGAATCGTTC+TGG | - | chr4_4:47694486-47694505 | None:intergenic | 35.0% | |
| GGAAAAAAAAAAACCTGGAG+AGG | - | chr4_4:47694623-47694642 | None:intergenic | 35.0% | |
| TCGACGGAAAAAAAAAAACC+TGG | - | chr4_4:47694628-47694647 | None:intergenic | 35.0% | |
| ! | AGAATAGTGGAACTAATCTC+AGG | - | chr4_4:47694797-47694816 | None:intergenic | 35.0% |
| GGTCAAGTGTAAACTAAAGA+TGG | - | chr4_4:47695222-47695241 | None:intergenic | 35.0% | |
| !!! | TGTTGTTTTTGCTAGTGGAA+AGG | + | chr4_4:47695436-47695455 | Msa0684350:intron | 35.0% |
| AGAGTTAATTCCGGTTCAAT+AGG | - | chr4_4:47695473-47695492 | None:intergenic | 35.0% | |
| TATTGAACCGGAATTAACTC+TGG | + | chr4_4:47695472-47695491 | Msa0684350:CDS | 35.0% | |
| GAAGAGAACTATGAACCTTT+GGG | - | chr4_4:47695545-47695564 | None:intergenic | 35.0% | |
| TGAAGAGAACTATGAACCTT+TGG | - | chr4_4:47695546-47695565 | None:intergenic | 35.0% | |
| CCGCAAATATTAGTGTACAA+CGG | - | chr4_4:47695733-47695752 | None:intergenic | 35.0% | |
| CCGTTGTACACTAATATTTG+CGG | + | chr4_4:47695730-47695749 | Msa0684350:three_prime_UTR | 35.0% | |
| AATCTAGACATGCATCAATC+AGG | - | chr4_4:47695818-47695837 | None:intergenic | 35.0% | |
| TGTAATTCTGTTTCGCTAGT+TGG | + | chr4_4:47695842-47695861 | Msa0684350:three_prime_UTR | 35.0% | |
| AACGACGAATTCGAATCCAT+CGG | - | chr4_4:47694554-47694573 | None:intergenic | 40.0% | |
| ! | TGTTAGGGAGTTTTGCTGAA+AGG | + | chr4_4:47694750-47694769 | Msa0684350:intron | 40.0% |
| ! | GTTAGGGAGTTTTGCTGAAA+GGG | + | chr4_4:47694751-47694770 | Msa0684350:intron | 40.0% |
| ! | AGTTTTGCTGAAAGGGAACA+CGG | + | chr4_4:47694758-47694777 | Msa0684350:CDS | 40.0% |
| ATTGGCATCTTGAATTCGCT+AGG | + | chr4_4:47694840-47694859 | Msa0684350:CDS | 40.0% | |
| AGTGTATGAATGTGGTCAAC+TGG | - | chr4_4:47694930-47694949 | None:intergenic | 40.0% | |
| ! | TTTTAACCTCCAGTTCCCAA+AGG | - | chr4_4:47695146-47695165 | None:intergenic | 40.0% |
| CTAAAGATGGTAAGGTTGCT+TGG | - | chr4_4:47695209-47695228 | None:intergenic | 40.0% | |
| CACGAAAGCAATCTAGAGAA+AGG | - | chr4_4:47695302-47695321 | None:intergenic | 40.0% | |
| CAGAGAGTTTCCTATTGAAC+CGG | + | chr4_4:47695460-47695479 | Msa0684350:CDS | 40.0% | |
| CGCTCAAGTATGTAGGTAAT+TGG | - | chr4_4:47695513-47695532 | None:intergenic | 40.0% | |
| ! | ACTATGAACCTTTGGGAAGT+CGG | - | chr4_4:47695538-47695557 | None:intergenic | 40.0% |
| ATTACCTGTCAAGGGAAAAG+CGG | - | chr4_4:47695656-47695675 | None:intergenic | 40.0% | |
| AACGACGAATTCGAATCCAT+CGG | - | chr4_4:47694554-47694573 | None:intergenic | 40.0% | |
| ! | TGTTAGGGAGTTTTGCTGAA+AGG | + | chr4_4:47694750-47694769 | Msa0684350:intron | 40.0% |
| ! | GTTAGGGAGTTTTGCTGAAA+GGG | + | chr4_4:47694751-47694770 | Msa0684350:intron | 40.0% |
| ! | AGTTTTGCTGAAAGGGAACA+CGG | + | chr4_4:47694758-47694777 | Msa0684350:CDS | 40.0% |
| ATTGGCATCTTGAATTCGCT+AGG | + | chr4_4:47694840-47694859 | Msa0684350:CDS | 40.0% | |
| AGTGTATGAATGTGGTCAAC+TGG | - | chr4_4:47694930-47694949 | None:intergenic | 40.0% | |
| ! | TTTTAACCTCCAGTTCCCAA+AGG | - | chr4_4:47695146-47695165 | None:intergenic | 40.0% |
| CTAAAGATGGTAAGGTTGCT+TGG | - | chr4_4:47695209-47695228 | None:intergenic | 40.0% | |
| CACGAAAGCAATCTAGAGAA+AGG | - | chr4_4:47695302-47695321 | None:intergenic | 40.0% | |
| CAGAGAGTTTCCTATTGAAC+CGG | + | chr4_4:47695460-47695479 | Msa0684350:CDS | 40.0% | |
| CGCTCAAGTATGTAGGTAAT+TGG | - | chr4_4:47695513-47695532 | None:intergenic | 40.0% | |
| ! | ACTATGAACCTTTGGGAAGT+CGG | - | chr4_4:47695538-47695557 | None:intergenic | 40.0% |
| ATTACCTGTCAAGGGAAAAG+CGG | - | chr4_4:47695656-47695675 | None:intergenic | 40.0% | |
| GTGAAACTGATCAGTTCCGA+TGG | + | chr4_4:47694535-47694554 | Msa0684350:CDS | 45.0% | |
| ! | GCGAATGGTTTGTGAAACCA+TGG | - | chr4_4:47694590-47694609 | None:intergenic | 45.0% |
| AGAGGTTAGCATGTTGCGAA+TGG | - | chr4_4:47694605-47694624 | None:intergenic | 45.0% | |
| ! | TGTACAGTTCACAAGGCATC+TGG | - | chr4_4:47695057-47695076 | None:intergenic | 45.0% |
| !! | GAACACGGTTGGTCTAAAAC+AGG | - | chr4_4:47695090-47695109 | None:intergenic | 45.0% |
| ! | GTAACGGAATTGAACACGGT+TGG | - | chr4_4:47695101-47695120 | None:intergenic | 45.0% |
| ! | CGGAGTAACGGAATTGAACA+CGG | - | chr4_4:47695105-47695124 | None:intergenic | 45.0% |
| CGTGTTCAATTCCGTTACTC+CGG | + | chr4_4:47695103-47695122 | Msa0684350:intron | 45.0% | |
| TTACCAGGACCACTTTCCTT+TGG | + | chr4_4:47695127-47695146 | Msa0684350:intron | 45.0% | |
| TACCAGGACCACTTTCCTTT+GGG | + | chr4_4:47695128-47695147 | Msa0684350:intron | 45.0% | |
| ATGTTTCCATGCCATGACCA+GGG | - | chr4_4:47695258-47695277 | None:intergenic | 45.0% | |
| TTACCTGTCAAGGGAAAAGC+GGG | - | chr4_4:47695655-47695674 | None:intergenic | 45.0% | |
| TCTGCTGCATTACCTGTCAA+GGG | - | chr4_4:47695664-47695683 | None:intergenic | 45.0% | |
| TTCTGCTGCATTACCTGTCA+AGG | - | chr4_4:47695665-47695684 | None:intergenic | 45.0% | |
| GTGAAACTGATCAGTTCCGA+TGG | + | chr4_4:47694535-47694554 | Msa0684350:CDS | 45.0% | |
| ! | GCGAATGGTTTGTGAAACCA+TGG | - | chr4_4:47694590-47694609 | None:intergenic | 45.0% |
| AGAGGTTAGCATGTTGCGAA+TGG | - | chr4_4:47694605-47694624 | None:intergenic | 45.0% | |
| ! | TGTACAGTTCACAAGGCATC+TGG | - | chr4_4:47695057-47695076 | None:intergenic | 45.0% |
| !! | GAACACGGTTGGTCTAAAAC+AGG | - | chr4_4:47695090-47695109 | None:intergenic | 45.0% |
| ! | GTAACGGAATTGAACACGGT+TGG | - | chr4_4:47695101-47695120 | None:intergenic | 45.0% |
| ! | CGGAGTAACGGAATTGAACA+CGG | - | chr4_4:47695105-47695124 | None:intergenic | 45.0% |
| CGTGTTCAATTCCGTTACTC+CGG | + | chr4_4:47695103-47695122 | Msa0684350:intron | 45.0% | |
| TTACCAGGACCACTTTCCTT+TGG | + | chr4_4:47695127-47695146 | Msa0684350:intron | 45.0% | |
| TACCAGGACCACTTTCCTTT+GGG | + | chr4_4:47695128-47695147 | Msa0684350:intron | 45.0% | |
| ATGTTTCCATGCCATGACCA+GGG | - | chr4_4:47695258-47695277 | None:intergenic | 45.0% | |
| TTACCTGTCAAGGGAAAAGC+GGG | - | chr4_4:47695655-47695674 | None:intergenic | 45.0% | |
| TCTGCTGCATTACCTGTCAA+GGG | - | chr4_4:47695664-47695683 | None:intergenic | 45.0% | |
| TTCTGCTGCATTACCTGTCA+AGG | - | chr4_4:47695665-47695684 | None:intergenic | 45.0% | |
| CGTTGACAAAGAAGCTGCCA+TGG | + | chr4_4:47694570-47694589 | Msa0684350:CDS | 50.0% | |
| TTCCGTTACTCCGGATTACC+AGG | + | chr4_4:47695112-47695131 | Msa0684350:intron | 50.0% | |
| GTCCTGGTAATCCGGAGTAA+CGG | - | chr4_4:47695117-47695136 | None:intergenic | 50.0% | |
| GGAAAGTGGTCCTGGTAATC+CGG | - | chr4_4:47695125-47695144 | None:intergenic | 50.0% | |
| TTCCCAAAGGAAAGTGGTCC+TGG | - | chr4_4:47695133-47695152 | None:intergenic | 50.0% | |
| ! | GACCACTTTCCTTTGGGAAC+TGG | + | chr4_4:47695134-47695153 | Msa0684350:intron | 50.0% |
| CTCCAGTTCCCAAAGGAAAG+TGG | - | chr4_4:47695139-47695158 | None:intergenic | 50.0% | |
| ! | CACTTTCCTTTGGGAACTGG+AGG | + | chr4_4:47695137-47695156 | Msa0684350:intron | 50.0% |
| GATGTTTCCATGCCATGACC+AGG | - | chr4_4:47695259-47695278 | None:intergenic | 50.0% | |
| GTCGGTACGCTCAAGTATGT+AGG | - | chr4_4:47695520-47695539 | None:intergenic | 50.0% | |
| CGTTGACAAAGAAGCTGCCA+TGG | + | chr4_4:47694570-47694589 | Msa0684350:CDS | 50.0% | |
| TTCCGTTACTCCGGATTACC+AGG | + | chr4_4:47695112-47695131 | Msa0684350:intron | 50.0% | |
| GTCCTGGTAATCCGGAGTAA+CGG | - | chr4_4:47695117-47695136 | None:intergenic | 50.0% | |
| GGAAAGTGGTCCTGGTAATC+CGG | - | chr4_4:47695125-47695144 | None:intergenic | 50.0% | |
| TTCCCAAAGGAAAGTGGTCC+TGG | - | chr4_4:47695133-47695152 | None:intergenic | 50.0% | |
| ! | GACCACTTTCCTTTGGGAAC+TGG | + | chr4_4:47695134-47695153 | Msa0684350:intron | 50.0% |
| CTCCAGTTCCCAAAGGAAAG+TGG | - | chr4_4:47695139-47695158 | None:intergenic | 50.0% | |
| ! | CACTTTCCTTTGGGAACTGG+AGG | + | chr4_4:47695137-47695156 | Msa0684350:intron | 50.0% |
| GATGTTTCCATGCCATGACC+AGG | - | chr4_4:47695259-47695278 | None:intergenic | 50.0% | |
| GTCGGTACGCTCAAGTATGT+AGG | - | chr4_4:47695520-47695539 | None:intergenic | 50.0% | |
| CGCAACATGCTAACCTCTCC+AGG | + | chr4_4:47694607-47694626 | Msa0684350:CDS | 55.0% | |
| !! | TGAGCGTACCGACTTCCCAA+AGG | + | chr4_4:47695527-47695546 | Msa0684350:exon | 55.0% |
| !! | CTTCCCGCTTTTCCCTTGAC+AGG | + | chr4_4:47695649-47695668 | Msa0684350:intron | 55.0% |
| CGCAACATGCTAACCTCTCC+AGG | + | chr4_4:47694607-47694626 | Msa0684350:CDS | 55.0% | |
| !! | TGAGCGTACCGACTTCCCAA+AGG | + | chr4_4:47695527-47695546 | Msa0684350:exon | 55.0% |
| !! | CTTCCCGCTTTTCCCTTGAC+AGG | + | chr4_4:47695649-47695668 | Msa0684350:intron | 55.0% |
| TGACCAGGGACGCAGGCTAG+CGG | - | chr4_4:47695244-47695263 | None:intergenic | 65.0% | |
| CTAGCCTGCGTCCCTGGTCA+TGG | + | chr4_4:47695244-47695263 | Msa0684350:intron | 65.0% | |
| CATGCCATGACCAGGGACGC+AGG | - | chr4_4:47695251-47695270 | None:intergenic | 65.0% | |
| CTGCGTCCCTGGTCATGGCA+TGG | + | chr4_4:47695249-47695268 | Msa0684350:intron | 65.0% | |
| TGACCAGGGACGCAGGCTAG+CGG | - | chr4_4:47695244-47695263 | None:intergenic | 65.0% | |
| CTAGCCTGCGTCCCTGGTCA+TGG | + | chr4_4:47695244-47695263 | Msa0684350:intron | 65.0% | |
| CATGCCATGACCAGGGACGC+AGG | - | chr4_4:47695251-47695270 | None:intergenic | 65.0% | |
| CTGCGTCCCTGGTCATGGCA+TGG | + | chr4_4:47695249-47695268 | Msa0684350:intron | 65.0% | |
| GACCAGGGACGCAGGCTAGC+GGG | - | chr4_4:47695243-47695262 | None:intergenic | 70.0% | |
| GACCAGGGACGCAGGCTAGC+GGG | - | chr4_4:47695243-47695262 | None:intergenic | 70.0% | |
| ! | GACCCGCTAGCCTGCGTCCC+TGG | + | chr4_4:47695238-47695257 | Msa0684350:intron | 75.0% |
| ! | GACCCGCTAGCCTGCGTCCC+TGG | + | chr4_4:47695238-47695257 | Msa0684350:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 47694463 | 47696003 | 47694463 | ID=Msa0684350;Name=Msa0684350 |
| chr4_4 | mRNA | 47694463 | 47696003 | 47694463 | ID=Msa0684350-mRNA-1;Parent=Msa0684350;Name=Msa0684350-mRNA-1;_AED=0.18;_eAED=0.18;_QI=54|1|1|1|0.66|0.5|4|352|98 |
| chr4_4 | exon | 47694463 | 47694628 | 47694463 | ID=Msa0684350-mRNA-1:exon:11791;Parent=Msa0684350-mRNA-1 |
| chr4_4 | exon | 47694756 | 47694861 | 47694756 | ID=Msa0684350-mRNA-1:exon:11792;Parent=Msa0684350-mRNA-1 |
| chr4_4 | exon | 47695451 | 47695548 | 47695451 | ID=Msa0684350-mRNA-1:exon:11793;Parent=Msa0684350-mRNA-1 |
| chr4_4 | exon | 47695671 | 47696003 | 47695671 | ID=Msa0684350-mRNA-1:exon:11794;Parent=Msa0684350-mRNA-1 |
| chr4_4 | five_prime_UTR | 47694463 | 47694516 | 47694463 | ID=Msa0684350-mRNA-1:five_prime_utr;Parent=Msa0684350-mRNA-1 |
| chr4_4 | CDS | 47694517 | 47694628 | 47694517 | ID=Msa0684350-mRNA-1:cds;Parent=Msa0684350-mRNA-1 |
| chr4_4 | CDS | 47694756 | 47694861 | 47694756 | ID=Msa0684350-mRNA-1:cds;Parent=Msa0684350-mRNA-1 |
| chr4_4 | CDS | 47695451 | 47695529 | 47695451 | ID=Msa0684350-mRNA-1:cds;Parent=Msa0684350-mRNA-1 |
| chr4_4 | three_prime_UTR | 47695530 | 47695548 | 47695530 | ID=Msa0684350-mRNA-1:three_prime_utr;Parent=Msa0684350-mRNA-1 |
| chr4_4 | three_prime_UTR | 47695671 | 47696003 | 47695671 | ID=Msa0684350-mRNA-1:three_prime_utr;Parent=Msa0684350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
