Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0603540 | XP_013456162.1 | 100.000 | 98 | 0 | 0 | 1 | 98 | 1 | 98 | 6.43e-67 | 206 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0603540 | sp|P83941|ELOC_RAT | 53.261 | 92 | 41 | 1 | 7 | 96 | 19 | 110 | 2.18e-27 | 99.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0603540 | I3SR24 | 100.000 | 98 | 0 | 0 | 1 | 98 | 1 | 98 | 3.07e-67 | 206 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008090 | Msa0603540 | 0.801172 | 1.020523e-48 | -8.615850e-47 |
| Msa0008410 | Msa0603540 | 0.848750 | 5.021735e-60 | -8.615850e-47 |
| Msa0014710 | Msa0603540 | 0.804806 | 1.810299e-49 | -8.615850e-47 |
| Msa0015300 | Msa0603540 | 0.830551 | 2.755573e-55 | -8.615850e-47 |
| Msa0026910 | Msa0603540 | 0.800118 | 1.674274e-48 | -8.615850e-47 |
| Msa0043980 | Msa0603540 | 0.819421 | 1.171859e-52 | -8.615850e-47 |
| Msa0068430 | Msa0603540 | 0.811825 | 5.767746e-51 | -8.615850e-47 |
| Msa0076000 | Msa0603540 | 0.809679 | 1.679485e-50 | -8.615850e-47 |
| Msa0081230 | Msa0603540 | 0.821321 | 4.295463e-53 | -8.615850e-47 |
| Msa0089360 | Msa0603540 | 0.817714 | 2.857004e-52 | -8.615850e-47 |
| Msa0090100 | Msa0603540 | 0.813436 | 2.562330e-51 | -8.615850e-47 |
| Msa0092990 | Msa0603540 | 0.805298 | 1.427915e-49 | -8.615850e-47 |
| Msa0094920 | Msa0603540 | 0.807941 | 3.952639e-50 | -8.615850e-47 |
| Msa0097990 | Msa0603540 | 0.807429 | 5.075838e-50 | -8.615850e-47 |
| Msa0104800 | Msa0603540 | 0.803115 | 4.066271e-49 | -8.615850e-47 |
| Msa0115810 | Msa0603540 | 0.801865 | 7.359229e-49 | -8.615850e-47 |
| Msa0120340 | Msa0603540 | 0.836228 | 1.057919e-56 | -8.615850e-47 |
| Msa0603540 | Msa0608710 | 0.813819 | 2.110467e-51 | -8.615850e-47 |
| Msa0603540 | Msa0618950 | 0.800001 | 1.768627e-48 | -8.615850e-47 |
| Msa0603540 | Msa0618970 | 0.805251 | 1.461258e-49 | -8.615850e-47 |
| Msa0603540 | Msa0626220 | 0.806721 | 7.168157e-50 | -8.615850e-47 |
| Msa0603540 | Msa0628290 | 0.804379 | 2.222642e-49 | -8.615850e-47 |
| Msa0603540 | Msa0628740 | 0.810921 | 9.064605e-51 | -8.615850e-47 |
| Msa0603540 | Msa0638070 | 0.804986 | 1.659642e-49 | -8.615850e-47 |
| Msa0603540 | Msa0641190 | 0.838691 | 2.474199e-57 | -8.615850e-47 |
| Msa0603540 | Msa0644840 | 0.929184 | 1.000268e-92 | -8.615850e-47 |
| Msa0603540 | Msa0652300 | 0.806929 | 6.477482e-50 | -8.615850e-47 |
| Msa0603540 | Msa0657750 | 0.803215 | 3.876758e-49 | -8.615850e-47 |
| Msa0603540 | Msa0663900 | 0.807669 | 4.514558e-50 | -8.615850e-47 |
| Msa0603540 | Msa0666140 | 0.812972 | 3.238624e-51 | -8.615850e-47 |
| Msa0603540 | Msa0679710 | 0.823934 | 1.060309e-53 | -8.615850e-47 |
| Msa0603540 | Msa0682900 | 0.813266 | 2.792715e-51 | -8.615850e-47 |
| Msa0603540 | Msa0684350 | 0.906538 | 1.333769e-80 | -8.615850e-47 |
| Msa0603540 | Msa0686080 | 0.814249 | 1.695732e-51 | -8.615850e-47 |
| Msa0603540 | Msa0687020 | 0.801463 | 8.898322e-49 | -8.615850e-47 |
| Msa0603540 | Msa0688480 | 0.800933 | 1.142200e-48 | -8.615850e-47 |
| Msa0603540 | Msa0689500 | 0.800987 | 1.113465e-48 | -8.615850e-47 |
| Msa0603540 | Msa0694840 | 0.818767 | 1.650447e-52 | -8.615850e-47 |
| Msa0603540 | Msa0703230 | 0.806328 | 8.674886e-50 | -8.615850e-47 |
| Msa0603540 | Msa0709500 | 0.817843 | 2.672421e-52 | -8.615850e-47 |
| Msa0603540 | Msa0711890 | 0.804684 | 1.919432e-49 | -8.615850e-47 |
| Msa0603540 | Msa0722020 | 0.800436 | 1.442708e-48 | -8.615850e-47 |
| Msa0603540 | Msa0724830 | 0.809822 | 1.564529e-50 | -8.615850e-47 |
| Msa0603540 | Msa0726830 | 0.820050 | 8.418850e-53 | -8.615850e-47 |
| Msa0603540 | Msa0726860 | 0.804390 | 2.210449e-49 | -8.615850e-47 |
| Msa0603540 | Msa0743260 | 0.803329 | 3.672379e-49 | -8.615850e-47 |
| Msa0603540 | Msa0748730 | 0.812893 | 3.370998e-51 | -8.615850e-47 |
| Msa0603540 | Msa0750430 | 0.807789 | 4.257644e-50 | -8.615850e-47 |
| Msa0603540 | Msa0764690 | 0.809989 | 1.440789e-50 | -8.615850e-47 |
| Msa0603540 | Msa0765380 | 0.836504 | 9.004555e-57 | -8.615850e-47 |
| Msa0603540 | Msa0777230 | 0.812754 | 3.616461e-51 | -8.615850e-47 |
| Msa0603540 | Msa0784380 | 0.800862 | 1.180889e-48 | -8.615850e-47 |
| Msa0603540 | Msa0790850 | 0.813253 | 2.810254e-51 | -8.615850e-47 |
| Msa0603540 | Msa0793390 | 0.804603 | 1.996035e-49 | -8.615850e-47 |
| Msa0603540 | Msa0828920 | 0.808131 | 3.600855e-50 | -8.615850e-47 |
| Msa0603540 | Msa0869100 | 0.808058 | 3.732159e-50 | -8.615850e-47 |
| Msa0603540 | Msa0869120 | 0.853732 | 1.967699e-61 | -8.615850e-47 |
| Msa0603540 | Msa0872440 | 0.820880 | 5.428417e-53 | -8.615850e-47 |
| Msa0603540 | Msa0874500 | 0.805297 | 1.429127e-49 | -8.615850e-47 |
| Msa0603540 | Msa0882510 | 0.807889 | 4.054367e-50 | -8.615850e-47 |
| Msa0603540 | Msa0899230 | 0.819381 | 1.196567e-52 | -8.615850e-47 |
| Msa0603540 | Msa0910980 | -0.821246 | 4.471356e-53 | -8.615850e-47 |
| Msa0603540 | Msa0922410 | 0.815152 | 1.070366e-51 | -8.615850e-47 |
| Msa0603540 | Msa0927670 | 0.818694 | 1.714736e-52 | -8.615850e-47 |
| Msa0603540 | Msa0930140 | 0.812959 | 3.261421e-51 | -8.615850e-47 |
| Msa0603540 | Msa0933310 | 0.809757 | 1.616009e-50 | -8.615850e-47 |
| Msa0603540 | Msa0957870 | 0.812876 | 3.399792e-51 | -8.615850e-47 |
| Msa0603540 | Msa0957970 | 0.806564 | 7.736750e-50 | -8.615850e-47 |
| Msa0603540 | Msa0960160 | 0.819348 | 1.217369e-52 | -8.615850e-47 |
| Msa0603540 | Msa0967370 | 0.812484 | 4.143127e-51 | -8.615850e-47 |
| Msa0603540 | Msa0970030 | 0.803860 | 2.849121e-49 | -8.615850e-47 |
| Msa0603540 | Msa0999100 | 0.802804 | 4.713968e-49 | -8.615850e-47 |
| Msa0603540 | Msa1039880 | 0.807147 | 5.825016e-50 | -8.615850e-47 |
| Msa0603540 | Msa1082500 | 0.832949 | 7.059269e-56 | -8.615850e-47 |
| Msa0603540 | Msa1089840 | 0.809732 | 1.636288e-50 | -8.615850e-47 |
| Msa0603540 | Msa1098400 | 0.800546 | 1.370147e-48 | -8.615850e-47 |
| Msa0603540 | Msa1100720 | 0.806720 | 7.170968e-50 | -8.615850e-47 |
| Msa0603540 | Msa1113670 | 0.817033 | 4.066382e-52 | -8.615850e-47 |
| Msa0603540 | Msa1123710 | -0.814768 | 1.301841e-51 | -8.615850e-47 |
| Msa0603540 | Msa1125760 | 0.816917 | 4.318990e-52 | -8.615850e-47 |
| Msa0603540 | Msa1131220 | 0.805918 | 1.058367e-49 | -8.615850e-47 |
| Msa0603540 | Msa1169850 | -0.823087 | 1.672580e-53 | -8.615850e-47 |
| Msa0603540 | Msa1171360 | 0.816234 | 6.141168e-52 | -8.615850e-47 |
| Msa0603540 | Msa1172670 | 0.816586 | 5.123696e-52 | -8.615850e-47 |
| Msa0603540 | Msa1187840 | 0.806428 | 8.266681e-50 | -8.615850e-47 |
| Msa0603540 | Msa1199220 | 0.812724 | 3.671607e-51 | -8.615850e-47 |
| Msa0603540 | Msa1199560 | 0.804349 | 2.254701e-49 | -8.615850e-47 |
| Msa0603540 | Msa1201560 | 0.846224 | 2.484627e-59 | -8.615850e-47 |
| Msa0603540 | Msa1207270 | 0.803466 | 3.439963e-49 | -8.615850e-47 |
| Msa0603540 | Msa1215920 | 0.816698 | 4.836110e-52 | -8.615850e-47 |
| Msa0603540 | Msa1217470 | 0.812436 | 4.244110e-51 | -8.615850e-47 |
| Msa0603540 | Msa1218600 | 0.811960 | 5.390850e-51 | -8.615850e-47 |
| Msa0603540 | Msa1233500 | 0.826551 | 2.549722e-54 | -8.615850e-47 |
| Msa0603540 | Msa1233890 | 0.823535 | 1.314425e-53 | -8.615850e-47 |
| Msa0603540 | Msa1237980 | 0.813687 | 2.255762e-51 | -8.615850e-47 |
| Msa0603540 | Msa1247250 | 0.814247 | 1.698228e-51 | -8.615850e-47 |
| Msa0603540 | Msa1250730 | 0.804062 | 2.587455e-49 | -8.615850e-47 |
| Msa0603540 | Msa1254510 | 0.800249 | 1.574804e-48 | -8.615850e-47 |
| Msa0603540 | Msa1267520 | 0.806897 | 6.581590e-50 | -8.615850e-47 |
| Msa0603540 | Msa1269300 | 0.802195 | 6.295083e-49 | -8.615850e-47 |
| Msa0603540 | Msa1276440 | 0.827298 | 1.690376e-54 | -8.615850e-47 |
| Msa0603540 | Msa1280620 | 0.800335 | 1.512866e-48 | -8.615850e-47 |
| Msa0603540 | Msa1294480 | 0.826414 | 2.748741e-54 | -8.615850e-47 |
| Msa0603540 | Msa1295490 | -0.812618 | 3.871358e-51 | -8.615850e-47 |
| Msa0603540 | Msa1296940 | 0.824538 | 7.646814e-54 | -8.615850e-47 |
| Msa0603540 | Msa1305190 | 0.813135 | 2.983586e-51 | -8.615850e-47 |
| Msa0603540 | Msa1305340 | 0.828831 | 7.223637e-55 | -8.615850e-47 |
| Msa0603540 | Msa1305710 | 0.834189 | 3.460256e-56 | -8.615850e-47 |
| Msa0603540 | Msa1306840 | 0.800038 | 1.738132e-48 | -8.615850e-47 |
| Msa0603540 | Msa1314340 | 0.819594 | 1.069974e-52 | -8.615850e-47 |
| Msa0603540 | Msa1316780 | 0.801162 | 1.025560e-48 | -8.615850e-47 |
| Msa0603540 | Msa1316830 | 0.801491 | 8.782740e-49 | -8.615850e-47 |
| Msa0603540 | Msa1331910 | 0.800005 | 1.765503e-48 | -8.615850e-47 |
| Msa0603540 | Msa1336710 | 0.817111 | 3.906405e-52 | -8.615850e-47 |
| Msa0603540 | Msa1339190 | 0.805090 | 1.578838e-49 | -8.615850e-47 |
| Msa0603540 | Msa1340020 | 0.823120 | 1.643415e-53 | -8.615850e-47 |
| Msa0603540 | Msa1340810 | 0.825344 | 4.933222e-54 | -8.615850e-47 |
| Msa0603540 | Msa1356440 | 0.801349 | 9.389817e-49 | -8.615850e-47 |
| Msa0603540 | Msa1359040 | 0.809782 | 1.596469e-50 | -8.615850e-47 |
| Msa0603540 | Msa1359650 | -0.825485 | 4.568111e-54 | -8.615850e-47 |
| Msa0603540 | Msa1371240 | 0.826935 | 2.064444e-54 | -8.615850e-47 |
| Msa0603540 | Msa1385670 | 0.806892 | 6.595661e-50 | -8.615850e-47 |
| Msa0603540 | Msa1397120 | 0.803284 | 3.752223e-49 | -8.615850e-47 |
| Msa0603540 | Msa1416390 | 0.816506 | 5.338162e-52 | -8.615850e-47 |
| Msa0603540 | Msa1417200 | 0.800972 | 1.121197e-48 | -8.615850e-47 |
| Msa0603540 | Msa1424450 | 0.821909 | 3.142174e-53 | -8.615850e-47 |
| Msa0603540 | Msa1444740 | 0.812447 | 4.219975e-51 | -8.615850e-47 |
| Msa0603540 | Msa1448630 | 0.808929 | 2.431876e-50 | -8.615850e-47 |
| Msa0603540 | Msa1461280 | 0.825908 | 3.625986e-54 | -8.615850e-47 |
| Msa0603540 | Msa1462290 | 0.808888 | 2.482184e-50 | -8.615850e-47 |
| Msa0603540 | Msa1465850 | 0.801066 | 1.072974e-48 | -8.615850e-47 |
| Msa0122590 | Msa0603540 | 0.817637 | 2.973927e-52 | -8.615850e-47 |
| Msa0137570 | Msa0603540 | 0.820818 | 5.611128e-53 | -8.615850e-47 |
| Msa0140110 | Msa0603540 | 0.803946 | 2.734991e-49 | -8.615850e-47 |
| Msa0145310 | Msa0603540 | 0.809573 | 1.769638e-50 | -8.615850e-47 |
| Msa0149000 | Msa0603540 | 0.805350 | 1.392783e-49 | -8.615850e-47 |
| Msa0151180 | Msa0603540 | 0.817252 | 3.631755e-52 | -8.615850e-47 |
| Msa0157100 | Msa0603540 | 0.825548 | 4.415027e-54 | -8.615850e-47 |
| Msa0159770 | Msa0603540 | 0.829298 | 5.567495e-55 | -8.615850e-47 |
| Msa0182570 | Msa0603540 | 0.817949 | 2.529435e-52 | -8.615850e-47 |
| Msa0184020 | Msa0603540 | 0.811040 | 8.539244e-51 | -8.615850e-47 |
| Msa0184960 | Msa0603540 | 0.816427 | 5.561042e-52 | -8.615850e-47 |
| Msa0185590 | Msa0603540 | 0.803538 | 3.323275e-49 | -8.615850e-47 |
| Msa0186890 | Msa0603540 | 0.805633 | 1.214918e-49 | -8.615850e-47 |
| Msa0205850 | Msa0603540 | 0.811043 | 8.528224e-51 | -8.615850e-47 |
| Msa0217680 | Msa0603540 | 0.824852 | 6.448768e-54 | -8.615850e-47 |
| Msa0220440 | Msa0603540 | 0.810823 | 9.517092e-51 | -8.615850e-47 |
| Msa0220580 | Msa0603540 | 0.818811 | 1.612838e-52 | -8.615850e-47 |
| Msa0223740 | Msa0603540 | 0.805366 | 1.382231e-49 | -8.615850e-47 |
| Msa0233350 | Msa0603540 | 0.807890 | 4.051382e-50 | -8.615850e-47 |
| Msa0233610 | Msa0603540 | 0.817819 | 2.705951e-52 | -8.615850e-47 |
| Msa0369440 | Msa0603540 | 0.804787 | 1.827043e-49 | -8.615850e-47 |
| Msa0372660 | Msa0603540 | 0.806479 | 8.064636e-50 | -8.615850e-47 |
| Msa0372670 | Msa0603540 | 0.801528 | 8.631392e-49 | -8.615850e-47 |
| Msa0379640 | Msa0603540 | 0.806801 | 6.895478e-50 | -8.615850e-47 |
| Msa0391690 | Msa0603540 | 0.830606 | 2.670985e-55 | -8.615850e-47 |
| Msa0415430 | Msa0603540 | 0.803865 | 2.842536e-49 | -8.615850e-47 |
| Msa0416300 | Msa0603540 | 0.804000 | 2.664705e-49 | -8.615850e-47 |
| Msa0426330 | Msa0603540 | 0.817726 | 2.840035e-52 | -8.615850e-47 |
| Msa0442200 | Msa0603540 | 0.811406 | 7.115297e-51 | -8.615850e-47 |
| Msa0446000 | Msa0603540 | 0.801461 | 8.908262e-49 | -8.615850e-47 |
| Msa0449830 | Msa0603540 | 0.807140 | 5.845793e-50 | -8.615850e-47 |
| Msa0453200 | Msa0603540 | 0.815465 | 9.118051e-52 | -8.615850e-47 |
| Msa0472960 | Msa0603540 | -0.823269 | 1.517247e-53 | -8.615850e-47 |
| Msa0477130 | Msa0603540 | -0.811695 | 6.155105e-51 | -8.615850e-47 |
| Msa0240300 | Msa0603540 | 0.803764 | 2.983739e-49 | -8.615850e-47 |
| Msa0243710 | Msa0603540 | 0.807718 | 4.408405e-50 | -8.615850e-47 |
| Msa0251770 | Msa0603540 | 0.819713 | 1.005194e-52 | -8.615850e-47 |
| Msa0260210 | Msa0603540 | 0.803740 | 3.017177e-49 | -8.615850e-47 |
| Msa0261720 | Msa0603540 | 0.802815 | 4.691003e-49 | -8.615850e-47 |
| Msa0264930 | Msa0603540 | 0.804878 | 1.748705e-49 | -8.615850e-47 |
| Msa0269450 | Msa0603540 | 0.801172 | 1.020523e-48 | -8.615850e-47 |
| Msa0276920 | Msa0603540 | 0.806913 | 6.529163e-50 | -8.615850e-47 |
| Msa0287410 | Msa0603540 | 0.815105 | 1.096254e-51 | -8.615850e-47 |
| Msa0287650 | Msa0603540 | 0.800311 | 1.529826e-48 | -8.615850e-47 |
| Msa0291500 | Msa0603540 | 0.836264 | 1.036115e-56 | -8.615850e-47 |
| Msa0304290 | Msa0603540 | 0.812058 | 5.131542e-51 | -8.615850e-47 |
| Msa0304330 | Msa0603540 | 0.814718 | 1.335732e-51 | -8.615850e-47 |
| Msa0311700 | Msa0603540 | 0.830303 | 3.168873e-55 | -8.615850e-47 |
| Msa0329350 | Msa0603540 | 0.823806 | 1.135887e-53 | -8.615850e-47 |
| Msa0333920 | Msa0603540 | 0.804084 | 2.559800e-49 | -8.615850e-47 |
| Msa0337060 | Msa0603540 | 0.802139 | 6.463293e-49 | -8.615850e-47 |
| Msa0342360 | Msa0603540 | 0.807583 | 4.708714e-50 | -8.615850e-47 |
| Msa0346430 | Msa0603540 | 0.829683 | 4.487411e-55 | -8.615850e-47 |
| Msa0361470 | Msa0603540 | 0.813824 | 2.105080e-51 | -8.615850e-47 |
| Msa0484780 | Msa0603540 | 0.838331 | 3.063985e-57 | -8.615850e-47 |
| Msa0485120 | Msa0603540 | 0.820622 | 6.223049e-53 | -8.615850e-47 |
| Msa0485850 | Msa0603540 | 0.801695 | 7.975166e-49 | -8.615850e-47 |
| Msa0501450 | Msa0603540 | 0.801263 | 9.778389e-49 | -8.615850e-47 |
| Msa0514180 | Msa0603540 | 0.803829 | 2.892632e-49 | -8.615850e-47 |
| Msa0523460 | Msa0603540 | 0.801822 | 7.510468e-49 | -8.615850e-47 |
| Msa0541860 | Msa0603540 | 0.808433 | 3.103988e-50 | -8.615850e-47 |
| Msa0545070 | Msa0603540 | 0.800165 | 1.637861e-48 | -8.615850e-47 |
| Msa0552810 | Msa0603540 | 0.804125 | 2.510218e-49 | -8.615850e-47 |
| Msa0556790 | Msa0603540 | 0.816904 | 4.346681e-52 | -8.615850e-47 |
| Msa0556860 | Msa0603540 | 0.809640 | 1.712465e-50 | -8.615850e-47 |
| Msa0575470 | Msa0603540 | 0.815694 | 8.106985e-52 | -8.615850e-47 |
| Msa0577220 | Msa0603540 | 0.847833 | 9.004050e-60 | -8.615850e-47 |
| Msa0577500 | Msa0603540 | 0.802463 | 5.544639e-49 | -8.615850e-47 |
| Msa0599580 | Msa0603540 | 0.821937 | 3.094949e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0603540 | MtrunA17_Chr4g0032221 | 100.000 | 98 | 0 | 0 | 1 | 98 | 1 | 98 | 5.92e-71 | 206 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0603540 | AT5G59140.1 | 76.596 | 94 | 22 | 0 | 5 | 98 | 3 | 96 | 5.05e-51 | 155 |
Find 28 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAACTGTTGCTTTGTTTA+TGG | 0.163438 | 4_2:+48126900 | Msa0603540:three_prime_UTR |
| CATTTGATTACACAGATTAT+AGG | 0.253948 | 4_2:-48126985 | None:intergenic |
| TGTAATTCTGTTTCACTAGT+TGG | 0.287574 | 4_2:+48127061 | Msa0603540:three_prime_UTR |
| CACAGATTATAGGTATATTC+TGG | 0.319779 | 4_2:-48126975 | None:intergenic |
| TGCTCAAGTATGTAGGTAAT+TGG | 0.335817 | 4_2:-48126729 | None:intergenic |
| AGAGTTAATTCCGGTTCAAT+AGG | 0.360441 | 4_2:-48126689 | None:intergenic |
| TGATATGTTAACAATTTGTT+TGG | 0.381399 | 4_2:+48127161 | Msa0603540:three_prime_UTR |
| CGCAACATGCTAACCTCTCC+AGG | 0.421886 | 4_2:+48125827 | Msa0603540:CDS |
| CCGTTGTACACTAATATTTG+CGG | 0.432210 | 4_2:+48126949 | Msa0603540:three_prime_UTR |
| CAGAGAGTTTCCTATTGAAC+CGG | 0.447017 | 4_2:+48126679 | Msa0603540:CDS |
| ACAAATCTTCTCAAGAATAG+TGG | 0.454935 | 4_2:-48126026 | None:intergenic |
| AATCTAGACATGCATCAATC+AGG | 0.461698 | 4_2:-48127034 | None:intergenic |
| ATTAACTCCAGAGTTAATTC+CGG | 0.493798 | 4_2:-48126698 | None:intergenic |
| AGAATAGTGGAACTAATCTC+AGG | 0.494240 | 4_2:-48126013 | None:intergenic |
| TATTGAACCGGAATTAACTC+TGG | 0.503972 | 4_2:+48126691 | Msa0603540:CDS |
| ATTAACTCTGGAGTTAATGA+TGG | 0.516802 | 4_2:+48126703 | Msa0603540:CDS |
| AAGAAAAGAAAAGATGAAGA+AGG | 0.522038 | 4_2:+48125724 | Msa0603540:exon |
| ATTGGCATCTTGAATTCGCT+AGG | 0.545787 | 4_2:+48126059 | Msa0603540:CDS |
| CGTTGACAAAGAAGCTGCCA+TGG | 0.556586 | 4_2:+48125790 | Msa0603540:CDS |
| ACTATGAACCTTTGGGAAGT+CGG | 0.574546 | 4_2:-48126754 | None:intergenic |
| AGAGGTTAGCATGTTGCGAA+TGG | 0.577623 | 4_2:-48125822 | None:intergenic |
| GTCGGTATGCTCAAGTATGT+AGG | 0.599265 | 4_2:-48126736 | None:intergenic |
| GTGAAACTGATCAGTTCCGA+TGG | 0.617937 | 4_2:+48125755 | Msa0603540:CDS |
| AACAAAGTATGATCAACTGA+CGG | 0.642742 | 4_2:-48127086 | None:intergenic |
| TGAGCATACCGACTTCCCAA+AGG | 0.647427 | 4_2:+48126746 | Msa0603540:exon |
| GCGAATGGTTTGTGAAACCA+TGG | 0.671918 | 4_2:-48125807 | None:intergenic |
| AACGACGAATTCGAATCCAT+CGG | 0.681941 | 4_2:-48125771 | None:intergenic |
| CCGCAAATATTAGTGTACAA+CGG | 0.694214 | 4_2:-48126949 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTTTTTTTAACCTC+CGG | - | chr4_2:48126376-48126395 | None:intergenic | 15.0% |
| !! | AATAACACAAATAAAATTGA+GGG | - | chr4_2:48126611-48126630 | None:intergenic | 15.0% |
| !! | AAATAACACAAATAAAATTG+AGG | - | chr4_2:48126612-48126631 | None:intergenic | 15.0% |
| !! | TTGTGAAAAAATGTTTAATT+TGG | + | chr4_2:48127194-48127213 | Msa0603540:three_prime_UTR | 15.0% |
| !!! | AATTTTTTTTTTTTAACCTC+CGG | - | chr4_2:48126376-48126395 | None:intergenic | 15.0% |
| !! | AATAACACAAATAAAATTGA+GGG | - | chr4_2:48126611-48126630 | None:intergenic | 15.0% |
| !! | AAATAACACAAATAAAATTG+AGG | - | chr4_2:48126612-48126631 | None:intergenic | 15.0% |
| !! | TTGTGAAAAAATGTTTAATT+TGG | + | chr4_2:48127194-48127213 | Msa0603540:three_prime_UTR | 15.0% |
| !! | CTAATCGAAAAACTATAAAA+AGG | - | chr4_2:48125878-48125897 | None:intergenic | 20.0% |
| !! | TTAGCGTTAATTCATATATA+AGG | + | chr4_2:48125916-48125935 | Msa0603540:intron | 20.0% |
| !!! | AGATTTGTCAGTATTTTTAT+TGG | + | chr4_2:48126041-48126060 | Msa0603540:CDS | 20.0% |
| !!! | AAAACTTTTTTTGAGCTTAA+AGG | - | chr4_2:48126241-48126260 | None:intergenic | 20.0% |
| !!! | TGATATGTTAACAATTTGTT+TGG | + | chr4_2:48127161-48127180 | Msa0603540:three_prime_UTR | 20.0% |
| !! | CTAATCGAAAAACTATAAAA+AGG | - | chr4_2:48125878-48125897 | None:intergenic | 20.0% |
| !! | TTAGCGTTAATTCATATATA+AGG | + | chr4_2:48125916-48125935 | Msa0603540:intron | 20.0% |
| !!! | AGATTTGTCAGTATTTTTAT+TGG | + | chr4_2:48126041-48126060 | Msa0603540:CDS | 20.0% |
| !!! | AAAACTTTTTTTGAGCTTAA+AGG | - | chr4_2:48126241-48126260 | None:intergenic | 20.0% |
| !!! | TGATATGTTAACAATTTGTT+TGG | + | chr4_2:48127161-48127180 | Msa0603540:three_prime_UTR | 20.0% |
| ! | AAGAAAAGAAAAGATGAAGA+AGG | + | chr4_2:48125724-48125743 | Msa0603540:exon | 25.0% |
| !!! | TTTTTCGATTAGTGCAATTA+GGG | + | chr4_2:48125886-48125905 | Msa0603540:intron | 25.0% |
| !!! | ATGTGATTTGTTCTTTGTTA+GGG | + | chr4_2:48125954-48125973 | Msa0603540:intron | 25.0% |
| ! | TTTCATGTTAGAATTGCAAT+TGG | + | chr4_2:48126098-48126117 | Msa0603540:intron | 25.0% |
| ! | ATTGAAATCTGAATTGCAAT+TGG | + | chr4_2:48126181-48126200 | Msa0603540:intron | 25.0% |
| ! | GATGATACAATGAAAATGTT+TGG | + | chr4_2:48126206-48126225 | Msa0603540:intron | 25.0% |
| !! | GGTATTATAAAATGATGATG+TGG | - | chr4_2:48126500-48126519 | None:intergenic | 25.0% |
| !!! | GTTTATATTGTTTTTGCTAG+TGG | + | chr4_2:48126650-48126669 | Msa0603540:intron | 25.0% |
| ! | GTTCTCTTCATTAATATTGT+AGG | + | chr4_2:48126775-48126794 | Msa0603540:intron | 25.0% |
| ! | CATTTGATTACACAGATTAT+AGG | - | chr4_2:48126988-48127007 | None:intergenic | 25.0% |
| ! | AAGAAAAGAAAAGATGAAGA+AGG | + | chr4_2:48125724-48125743 | Msa0603540:exon | 25.0% |
| !!! | TTTTTCGATTAGTGCAATTA+GGG | + | chr4_2:48125886-48125905 | Msa0603540:intron | 25.0% |
| !!! | ATGTGATTTGTTCTTTGTTA+GGG | + | chr4_2:48125954-48125973 | Msa0603540:intron | 25.0% |
| ! | TTTCATGTTAGAATTGCAAT+TGG | + | chr4_2:48126098-48126117 | Msa0603540:intron | 25.0% |
| ! | ATTGAAATCTGAATTGCAAT+TGG | + | chr4_2:48126181-48126200 | Msa0603540:intron | 25.0% |
| ! | GATGATACAATGAAAATGTT+TGG | + | chr4_2:48126206-48126225 | Msa0603540:intron | 25.0% |
| !! | GGTATTATAAAATGATGATG+TGG | - | chr4_2:48126500-48126519 | None:intergenic | 25.0% |
| !!! | GTTTATATTGTTTTTGCTAG+TGG | + | chr4_2:48126650-48126669 | Msa0603540:intron | 25.0% |
| ! | GTTCTCTTCATTAATATTGT+AGG | + | chr4_2:48126775-48126794 | Msa0603540:intron | 25.0% |
| ! | CATTTGATTACACAGATTAT+AGG | - | chr4_2:48126988-48127007 | None:intergenic | 25.0% |
| ! | GCGATTTCTCATTTTCATAA+CGG | + | chr4_2:48125684-48125703 | Msa0603540:five_prime_UTR | 30.0% |
| TAAAAAGGTAAAGTGATCGA+CGG | - | chr4_2:48125863-48125882 | None:intergenic | 30.0% | |
| !! | GTTTTTCGATTAGTGCAATT+AGG | + | chr4_2:48125885-48125904 | Msa0603540:intron | 30.0% |
| !! | GATGTGATTTGTTCTTTGTT+AGG | + | chr4_2:48125953-48125972 | Msa0603540:intron | 30.0% |
| ACAAATCTTCTCAAGAATAG+TGG | - | chr4_2:48126029-48126048 | None:intergenic | 30.0% | |
| ! | TTGCAAAAAGTGTATGAATG+TGG | - | chr4_2:48126157-48126176 | None:intergenic | 30.0% |
| TAATTGTTGTACAGTTCACA+AGG | - | chr4_2:48126284-48126303 | None:intergenic | 30.0% | |
| AGTGTAAACTAAAGATGGTA+AGG | - | chr4_2:48126436-48126455 | None:intergenic | 30.0% | |
| !! | ATAGTCGCAAAAGTTTGTTT+TGG | + | chr4_2:48126541-48126560 | Msa0603540:intron | 30.0% |
| !!! | TATTGTTTTTGCTAGTGGAA+AGG | + | chr4_2:48126655-48126674 | Msa0603540:intron | 30.0% |
| ATTAACTCCAGAGTTAATTC+CGG | - | chr4_2:48126701-48126720 | None:intergenic | 30.0% | |
| !! | ATTAACTCTGGAGTTAATGA+TGG | + | chr4_2:48126703-48126722 | Msa0603540:CDS | 30.0% |
| !! | AGAAACTGTTGCTTTGTTTA+TGG | + | chr4_2:48126900-48126919 | Msa0603540:three_prime_UTR | 30.0% |
| CACAGATTATAGGTATATTC+TGG | - | chr4_2:48126978-48126997 | None:intergenic | 30.0% | |
| TGTAATTCTGTTTCACTAGT+TGG | + | chr4_2:48127061-48127080 | Msa0603540:three_prime_UTR | 30.0% | |
| AACAAAGTATGATCAACTGA+CGG | - | chr4_2:48127089-48127108 | None:intergenic | 30.0% | |
| ! | GCGATTTCTCATTTTCATAA+CGG | + | chr4_2:48125684-48125703 | Msa0603540:five_prime_UTR | 30.0% |
| TAAAAAGGTAAAGTGATCGA+CGG | - | chr4_2:48125863-48125882 | None:intergenic | 30.0% | |
| !! | GTTTTTCGATTAGTGCAATT+AGG | + | chr4_2:48125885-48125904 | Msa0603540:intron | 30.0% |
| !! | GATGTGATTTGTTCTTTGTT+AGG | + | chr4_2:48125953-48125972 | Msa0603540:intron | 30.0% |
| ACAAATCTTCTCAAGAATAG+TGG | - | chr4_2:48126029-48126048 | None:intergenic | 30.0% | |
| ! | TTGCAAAAAGTGTATGAATG+TGG | - | chr4_2:48126157-48126176 | None:intergenic | 30.0% |
| TAATTGTTGTACAGTTCACA+AGG | - | chr4_2:48126284-48126303 | None:intergenic | 30.0% | |
| AGTGTAAACTAAAGATGGTA+AGG | - | chr4_2:48126436-48126455 | None:intergenic | 30.0% | |
| !! | ATAGTCGCAAAAGTTTGTTT+TGG | + | chr4_2:48126541-48126560 | Msa0603540:intron | 30.0% |
| !!! | TATTGTTTTTGCTAGTGGAA+AGG | + | chr4_2:48126655-48126674 | Msa0603540:intron | 30.0% |
| ATTAACTCCAGAGTTAATTC+CGG | - | chr4_2:48126701-48126720 | None:intergenic | 30.0% | |
| !! | ATTAACTCTGGAGTTAATGA+TGG | + | chr4_2:48126703-48126722 | Msa0603540:CDS | 30.0% |
| !! | AGAAACTGTTGCTTTGTTTA+TGG | + | chr4_2:48126900-48126919 | Msa0603540:three_prime_UTR | 30.0% |
| CACAGATTATAGGTATATTC+TGG | - | chr4_2:48126978-48126997 | None:intergenic | 30.0% | |
| TGTAATTCTGTTTCACTAGT+TGG | + | chr4_2:48127061-48127080 | Msa0603540:three_prime_UTR | 30.0% | |
| AACAAAGTATGATCAACTGA+CGG | - | chr4_2:48127089-48127108 | None:intergenic | 30.0% | |
| ATCGACGGAAAAAAAAAACC+TGG | - | chr4_2:48125848-48125867 | None:intergenic | 35.0% | |
| ! | AGAATAGTGGAACTAATCTC+AGG | - | chr4_2:48126016-48126035 | None:intergenic | 35.0% |
| GGTCAAGTGTAAACTAAAGA+TGG | - | chr4_2:48126441-48126460 | None:intergenic | 35.0% | |
| AGAGTTAATTCCGGTTCAAT+AGG | - | chr4_2:48126692-48126711 | None:intergenic | 35.0% | |
| TATTGAACCGGAATTAACTC+TGG | + | chr4_2:48126691-48126710 | Msa0603540:CDS | 35.0% | |
| TGCTCAAGTATGTAGGTAAT+TGG | - | chr4_2:48126732-48126751 | None:intergenic | 35.0% | |
| GAAGAGAACTATGAACCTTT+GGG | - | chr4_2:48126764-48126783 | None:intergenic | 35.0% | |
| TGAAGAGAACTATGAACCTT+TGG | - | chr4_2:48126765-48126784 | None:intergenic | 35.0% | |
| CCGCAAATATTAGTGTACAA+CGG | - | chr4_2:48126952-48126971 | None:intergenic | 35.0% | |
| CCGTTGTACACTAATATTTG+CGG | + | chr4_2:48126949-48126968 | Msa0603540:three_prime_UTR | 35.0% | |
| AATCTAGACATGCATCAATC+AGG | - | chr4_2:48127037-48127056 | None:intergenic | 35.0% | |
| ATCGACGGAAAAAAAAAACC+TGG | - | chr4_2:48125848-48125867 | None:intergenic | 35.0% | |
| ! | AGAATAGTGGAACTAATCTC+AGG | - | chr4_2:48126016-48126035 | None:intergenic | 35.0% |
| GGTCAAGTGTAAACTAAAGA+TGG | - | chr4_2:48126441-48126460 | None:intergenic | 35.0% | |
| AGAGTTAATTCCGGTTCAAT+AGG | - | chr4_2:48126692-48126711 | None:intergenic | 35.0% | |
| TATTGAACCGGAATTAACTC+TGG | + | chr4_2:48126691-48126710 | Msa0603540:CDS | 35.0% | |
| TGCTCAAGTATGTAGGTAAT+TGG | - | chr4_2:48126732-48126751 | None:intergenic | 35.0% | |
| GAAGAGAACTATGAACCTTT+GGG | - | chr4_2:48126764-48126783 | None:intergenic | 35.0% | |
| TGAAGAGAACTATGAACCTT+TGG | - | chr4_2:48126765-48126784 | None:intergenic | 35.0% | |
| CCGCAAATATTAGTGTACAA+CGG | - | chr4_2:48126952-48126971 | None:intergenic | 35.0% | |
| CCGTTGTACACTAATATTTG+CGG | + | chr4_2:48126949-48126968 | Msa0603540:three_prime_UTR | 35.0% | |
| AATCTAGACATGCATCAATC+AGG | - | chr4_2:48127037-48127056 | None:intergenic | 35.0% | |
| AACGACGAATTCGAATCCAT+CGG | - | chr4_2:48125774-48125793 | None:intergenic | 40.0% | |
| CGGAAAAAAAAAACCTGGAG+AGG | - | chr4_2:48125843-48125862 | None:intergenic | 40.0% | |
| ! | TGTTAGGGAGTTTTGCTGAA+AGG | + | chr4_2:48125969-48125988 | Msa0603540:intron | 40.0% |
| ! | GTTAGGGAGTTTTGCTGAAA+GGG | + | chr4_2:48125970-48125989 | Msa0603540:intron | 40.0% |
| ! | AGTTTTGCTGAAAGGGAACA+CGG | + | chr4_2:48125977-48125996 | Msa0603540:CDS | 40.0% |
| ATTGGCATCTTGAATTCGCT+AGG | + | chr4_2:48126059-48126078 | Msa0603540:CDS | 40.0% | |
| AGTGTATGAATGTGGTCAAC+TGG | - | chr4_2:48126149-48126168 | None:intergenic | 40.0% | |
| CTAAAGATGGTAAGGTTGCT+TGG | - | chr4_2:48126428-48126447 | None:intergenic | 40.0% | |
| CACGAAAGCAATCTAGAGAA+AGG | - | chr4_2:48126521-48126540 | None:intergenic | 40.0% | |
| CAGAGAGTTTCCTATTGAAC+CGG | + | chr4_2:48126679-48126698 | Msa0603540:CDS | 40.0% | |
| ! | ACTATGAACCTTTGGGAAGT+CGG | - | chr4_2:48126757-48126776 | None:intergenic | 40.0% |
| ATTACCTGTCAAGGGAAAAG+CGG | - | chr4_2:48126875-48126894 | None:intergenic | 40.0% | |
| AACGACGAATTCGAATCCAT+CGG | - | chr4_2:48125774-48125793 | None:intergenic | 40.0% | |
| CGGAAAAAAAAAACCTGGAG+AGG | - | chr4_2:48125843-48125862 | None:intergenic | 40.0% | |
| ! | TGTTAGGGAGTTTTGCTGAA+AGG | + | chr4_2:48125969-48125988 | Msa0603540:intron | 40.0% |
| ! | GTTAGGGAGTTTTGCTGAAA+GGG | + | chr4_2:48125970-48125989 | Msa0603540:intron | 40.0% |
| ! | AGTTTTGCTGAAAGGGAACA+CGG | + | chr4_2:48125977-48125996 | Msa0603540:CDS | 40.0% |
| ATTGGCATCTTGAATTCGCT+AGG | + | chr4_2:48126059-48126078 | Msa0603540:CDS | 40.0% | |
| AGTGTATGAATGTGGTCAAC+TGG | - | chr4_2:48126149-48126168 | None:intergenic | 40.0% | |
| CTAAAGATGGTAAGGTTGCT+TGG | - | chr4_2:48126428-48126447 | None:intergenic | 40.0% | |
| CACGAAAGCAATCTAGAGAA+AGG | - | chr4_2:48126521-48126540 | None:intergenic | 40.0% | |
| CAGAGAGTTTCCTATTGAAC+CGG | + | chr4_2:48126679-48126698 | Msa0603540:CDS | 40.0% | |
| ! | ACTATGAACCTTTGGGAAGT+CGG | - | chr4_2:48126757-48126776 | None:intergenic | 40.0% |
| ATTACCTGTCAAGGGAAAAG+CGG | - | chr4_2:48126875-48126894 | None:intergenic | 40.0% | |
| GTGAAACTGATCAGTTCCGA+TGG | + | chr4_2:48125755-48125774 | Msa0603540:CDS | 45.0% | |
| ! | GCGAATGGTTTGTGAAACCA+TGG | - | chr4_2:48125810-48125829 | None:intergenic | 45.0% |
| AGAGGTTAGCATGTTGCGAA+TGG | - | chr4_2:48125825-48125844 | None:intergenic | 45.0% | |
| ! | TGTACAGTTCACAAGGCATC+TGG | - | chr4_2:48126277-48126296 | None:intergenic | 45.0% |
| !! | GAACACGGTTGGTCTAAAAC+AGG | - | chr4_2:48126310-48126329 | None:intergenic | 45.0% |
| ! | GTAACGGAATTGAACACGGT+TGG | - | chr4_2:48126321-48126340 | None:intergenic | 45.0% |
| ! | CGGAGTAACGGAATTGAACA+CGG | - | chr4_2:48126325-48126344 | None:intergenic | 45.0% |
| CGTGTTCAATTCCGTTACTC+CGG | + | chr4_2:48126323-48126342 | Msa0603540:intron | 45.0% | |
| TTACCAGGACCACTTTCCTT+TGG | + | chr4_2:48126347-48126366 | Msa0603540:intron | 45.0% | |
| TACCAGGACCACTTTCCTTT+GGG | + | chr4_2:48126348-48126367 | Msa0603540:intron | 45.0% | |
| ! | TTTTAACCTCCGGTTCCCAA+AGG | - | chr4_2:48126366-48126385 | None:intergenic | 45.0% |
| GTCGGTATGCTCAAGTATGT+AGG | - | chr4_2:48126739-48126758 | None:intergenic | 45.0% | |
| TTACCTGTCAAGGGAAAAGC+GGG | - | chr4_2:48126874-48126893 | None:intergenic | 45.0% | |
| TCTGCTGCATTACCTGTCAA+GGG | - | chr4_2:48126883-48126902 | None:intergenic | 45.0% | |
| TTCTGCTGCATTACCTGTCA+AGG | - | chr4_2:48126884-48126903 | None:intergenic | 45.0% | |
| GTGAAACTGATCAGTTCCGA+TGG | + | chr4_2:48125755-48125774 | Msa0603540:CDS | 45.0% | |
| ! | GCGAATGGTTTGTGAAACCA+TGG | - | chr4_2:48125810-48125829 | None:intergenic | 45.0% |
| AGAGGTTAGCATGTTGCGAA+TGG | - | chr4_2:48125825-48125844 | None:intergenic | 45.0% | |
| ! | TGTACAGTTCACAAGGCATC+TGG | - | chr4_2:48126277-48126296 | None:intergenic | 45.0% |
| !! | GAACACGGTTGGTCTAAAAC+AGG | - | chr4_2:48126310-48126329 | None:intergenic | 45.0% |
| ! | GTAACGGAATTGAACACGGT+TGG | - | chr4_2:48126321-48126340 | None:intergenic | 45.0% |
| ! | CGGAGTAACGGAATTGAACA+CGG | - | chr4_2:48126325-48126344 | None:intergenic | 45.0% |
| CGTGTTCAATTCCGTTACTC+CGG | + | chr4_2:48126323-48126342 | Msa0603540:intron | 45.0% | |
| TTACCAGGACCACTTTCCTT+TGG | + | chr4_2:48126347-48126366 | Msa0603540:intron | 45.0% | |
| TACCAGGACCACTTTCCTTT+GGG | + | chr4_2:48126348-48126367 | Msa0603540:intron | 45.0% | |
| ! | TTTTAACCTCCGGTTCCCAA+AGG | - | chr4_2:48126366-48126385 | None:intergenic | 45.0% |
| GTCGGTATGCTCAAGTATGT+AGG | - | chr4_2:48126739-48126758 | None:intergenic | 45.0% | |
| TTACCTGTCAAGGGAAAAGC+GGG | - | chr4_2:48126874-48126893 | None:intergenic | 45.0% | |
| TCTGCTGCATTACCTGTCAA+GGG | - | chr4_2:48126883-48126902 | None:intergenic | 45.0% | |
| TTCTGCTGCATTACCTGTCA+AGG | - | chr4_2:48126884-48126903 | None:intergenic | 45.0% | |
| CGTTGACAAAGAAGCTGCCA+TGG | + | chr4_2:48125790-48125809 | Msa0603540:CDS | 50.0% | |
| TTCCGTTACTCCGGATTACC+AGG | + | chr4_2:48126332-48126351 | Msa0603540:intron | 50.0% | |
| GTCCTGGTAATCCGGAGTAA+CGG | - | chr4_2:48126337-48126356 | None:intergenic | 50.0% | |
| GGAAAGTGGTCCTGGTAATC+CGG | - | chr4_2:48126345-48126364 | None:intergenic | 50.0% | |
| TTCCCAAAGGAAAGTGGTCC+TGG | - | chr4_2:48126353-48126372 | None:intergenic | 50.0% | |
| ! | GACCACTTTCCTTTGGGAAC+CGG | + | chr4_2:48126354-48126373 | Msa0603540:intron | 50.0% |
| ATGTTTCCATGCCACGACCA+GGG | - | chr4_2:48126477-48126496 | None:intergenic | 50.0% | |
| !! | TGAGCATACCGACTTCCCAA+AGG | + | chr4_2:48126746-48126765 | Msa0603540:exon | 50.0% |
| CGTTGACAAAGAAGCTGCCA+TGG | + | chr4_2:48125790-48125809 | Msa0603540:CDS | 50.0% | |
| TTCCGTTACTCCGGATTACC+AGG | + | chr4_2:48126332-48126351 | Msa0603540:intron | 50.0% | |
| GTCCTGGTAATCCGGAGTAA+CGG | - | chr4_2:48126337-48126356 | None:intergenic | 50.0% | |
| GGAAAGTGGTCCTGGTAATC+CGG | - | chr4_2:48126345-48126364 | None:intergenic | 50.0% | |
| TTCCCAAAGGAAAGTGGTCC+TGG | - | chr4_2:48126353-48126372 | None:intergenic | 50.0% | |
| ! | GACCACTTTCCTTTGGGAAC+CGG | + | chr4_2:48126354-48126373 | Msa0603540:intron | 50.0% |
| ATGTTTCCATGCCACGACCA+GGG | - | chr4_2:48126477-48126496 | None:intergenic | 50.0% | |
| !! | TGAGCATACCGACTTCCCAA+AGG | + | chr4_2:48126746-48126765 | Msa0603540:exon | 50.0% |
| CGCAACATGCTAACCTCTCC+AGG | + | chr4_2:48125827-48125846 | Msa0603540:CDS | 55.0% | |
| CTCCGGTTCCCAAAGGAAAG+TGG | - | chr4_2:48126359-48126378 | None:intergenic | 55.0% | |
| ! | CACTTTCCTTTGGGAACCGG+AGG | + | chr4_2:48126357-48126376 | Msa0603540:intron | 55.0% |
| GATGTTTCCATGCCACGACC+AGG | - | chr4_2:48126478-48126497 | None:intergenic | 55.0% | |
| !! | CTTCCCGCTTTTCCCTTGAC+AGG | + | chr4_2:48126868-48126887 | Msa0603540:intron | 55.0% |
| CGCAACATGCTAACCTCTCC+AGG | + | chr4_2:48125827-48125846 | Msa0603540:CDS | 55.0% | |
| CTCCGGTTCCCAAAGGAAAG+TGG | - | chr4_2:48126359-48126378 | None:intergenic | 55.0% | |
| ! | CACTTTCCTTTGGGAACCGG+AGG | + | chr4_2:48126357-48126376 | Msa0603540:intron | 55.0% |
| GATGTTTCCATGCCACGACC+AGG | - | chr4_2:48126478-48126497 | None:intergenic | 55.0% | |
| !! | CTTCCCGCTTTTCCCTTGAC+AGG | + | chr4_2:48126868-48126887 | Msa0603540:intron | 55.0% |
| GACCAGGGACGCAGGCTAGC+GGG | - | chr4_2:48126462-48126481 | None:intergenic | 70.0% | |
| CGACCAGGGACGCAGGCTAG+CGG | - | chr4_2:48126463-48126482 | None:intergenic | 70.0% | |
| CTAGCCTGCGTCCCTGGTCG+TGG | + | chr4_2:48126463-48126482 | Msa0603540:intron | 70.0% | |
| CATGCCACGACCAGGGACGC+AGG | - | chr4_2:48126470-48126489 | None:intergenic | 70.0% | |
| CTGCGTCCCTGGTCGTGGCA+TGG | + | chr4_2:48126468-48126487 | Msa0603540:intron | 70.0% | |
| GACCAGGGACGCAGGCTAGC+GGG | - | chr4_2:48126462-48126481 | None:intergenic | 70.0% | |
| CGACCAGGGACGCAGGCTAG+CGG | - | chr4_2:48126463-48126482 | None:intergenic | 70.0% | |
| CTAGCCTGCGTCCCTGGTCG+TGG | + | chr4_2:48126463-48126482 | Msa0603540:intron | 70.0% | |
| CATGCCACGACCAGGGACGC+AGG | - | chr4_2:48126470-48126489 | None:intergenic | 70.0% | |
| CTGCGTCCCTGGTCGTGGCA+TGG | + | chr4_2:48126468-48126487 | Msa0603540:intron | 70.0% | |
| ! | GACCCGCTAGCCTGCGTCCC+TGG | + | chr4_2:48126457-48126476 | Msa0603540:intron | 75.0% |
| ! | GACCCGCTAGCCTGCGTCCC+TGG | + | chr4_2:48126457-48126476 | Msa0603540:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 48125684 | 48127222 | 48125684 | ID=Msa0603540;Name=Msa0603540 |
| chr4_2 | mRNA | 48125684 | 48127222 | 48125684 | ID=Msa0603540-mRNA-1;Parent=Msa0603540;Name=Msa0603540-mRNA-1;_AED=0.20;_eAED=0.20;_QI=53|1|1|1|0.66|0.5|4|352|98 |
| chr4_2 | exon | 48125684 | 48125848 | 48125684 | ID=Msa0603540-mRNA-1:exon:11079;Parent=Msa0603540-mRNA-1 |
| chr4_2 | exon | 48125975 | 48126080 | 48125975 | ID=Msa0603540-mRNA-1:exon:11080;Parent=Msa0603540-mRNA-1 |
| chr4_2 | exon | 48126670 | 48126767 | 48126670 | ID=Msa0603540-mRNA-1:exon:11081;Parent=Msa0603540-mRNA-1 |
| chr4_2 | exon | 48126890 | 48127222 | 48126890 | ID=Msa0603540-mRNA-1:exon:11082;Parent=Msa0603540-mRNA-1 |
| chr4_2 | five_prime_UTR | 48125684 | 48125736 | 48125684 | ID=Msa0603540-mRNA-1:five_prime_utr;Parent=Msa0603540-mRNA-1 |
| chr4_2 | CDS | 48125737 | 48125848 | 48125737 | ID=Msa0603540-mRNA-1:cds;Parent=Msa0603540-mRNA-1 |
| chr4_2 | CDS | 48125975 | 48126080 | 48125975 | ID=Msa0603540-mRNA-1:cds;Parent=Msa0603540-mRNA-1 |
| chr4_2 | CDS | 48126670 | 48126748 | 48126670 | ID=Msa0603540-mRNA-1:cds;Parent=Msa0603540-mRNA-1 |
| chr4_2 | three_prime_UTR | 48126749 | 48126767 | 48126749 | ID=Msa0603540-mRNA-1:three_prime_utr;Parent=Msa0603540-mRNA-1 |
| chr4_2 | three_prime_UTR | 48126890 | 48127222 | 48126890 | ID=Msa0603540-mRNA-1:three_prime_utr;Parent=Msa0603540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
