Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0010020 | sp|Q9FK13|PDV1_ARATH | 51.648 | 273 | 117 | 6 | 12 | 280 | 11 | 272 | 1.78e-84 | 257 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008410 | Msa0010020 | 0.819119 | 1.373101e-52 | -8.615850e-47 |
| Msa0010020 | Msa0027390 | 0.805598 | 1.235732e-49 | -8.615850e-47 |
| Msa0010020 | Msa0032370 | 0.807330 | 5.329318e-50 | -8.615850e-47 |
| Msa0010020 | Msa0044020 | 0.805429 | 1.340428e-49 | -8.615850e-47 |
| Msa0010020 | Msa0048000 | 0.811010 | 8.670767e-51 | -8.615850e-47 |
| Msa0010020 | Msa0081230 | 0.801236 | 9.905226e-49 | -8.615850e-47 |
| Msa0010020 | Msa0097990 | 0.800422 | 1.452032e-48 | -8.615850e-47 |
| Msa0010020 | Msa0104610 | 0.800226 | 1.592116e-48 | -8.615850e-47 |
| Msa0010020 | Msa0150800 | 0.844152 | 9.021847e-59 | -8.615850e-47 |
| Msa0010020 | Msa0165300 | 0.802042 | 6.769135e-49 | -8.615850e-47 |
| Msa0010020 | Msa0172350 | 0.802478 | 5.504312e-49 | -8.615850e-47 |
| Msa0010020 | Msa0185590 | 0.817159 | 3.809903e-52 | -8.615850e-47 |
| Msa0010020 | Msa0191250 | 0.800760 | 1.239279e-48 | -8.615850e-47 |
| Msa0010020 | Msa0205850 | 0.813978 | 1.946267e-51 | -8.615850e-47 |
| Msa0010020 | Msa0260810 | 0.817879 | 2.622064e-52 | -8.615850e-47 |
| Msa0010020 | Msa0267870 | 0.816065 | 6.702286e-52 | -8.615850e-47 |
| Msa0010020 | Msa0288730 | 0.803800 | 2.932531e-49 | -8.615850e-47 |
| Msa0010020 | Msa0333920 | 0.804141 | 2.491210e-49 | -8.615850e-47 |
| Msa0010020 | Msa0334040 | 0.811996 | 5.293798e-51 | -8.615850e-47 |
| Msa0010020 | Msa0343190 | 0.800020 | 1.752752e-48 | -8.615850e-47 |
| Msa0010020 | Msa0410300 | 0.810801 | 9.621805e-51 | -8.615850e-47 |
| Msa0010020 | Msa0415810 | 0.815640 | 8.337234e-52 | -8.615850e-47 |
| Msa0010020 | Msa0428170 | 0.823528 | 1.319493e-53 | -8.615850e-47 |
| Msa0010020 | Msa0436280 | -0.800857 | 1.183669e-48 | -8.615850e-47 |
| Msa0010020 | Msa0460930 | 0.805584 | 1.243947e-49 | -8.615850e-47 |
| Msa0010020 | Msa0461590 | 0.817561 | 3.093003e-52 | -8.615850e-47 |
| Msa0010020 | Msa0464900 | 0.808991 | 2.359473e-50 | -8.615850e-47 |
| Msa0010020 | Msa0473240 | 0.801293 | 9.640207e-49 | -8.615850e-47 |
| Msa0010020 | Msa0484780 | 0.801920 | 7.171869e-49 | -8.615850e-47 |
| Msa0010020 | Msa0490750 | 0.804447 | 2.151288e-49 | -8.615850e-47 |
| Msa0010020 | Msa0506940 | 0.801101 | 1.055416e-48 | -8.615850e-47 |
| Msa0010020 | Msa0577220 | 0.817853 | 2.658450e-52 | -8.615850e-47 |
| Msa0010020 | Msa0586850 | 0.802586 | 5.228302e-49 | -8.615850e-47 |
| Msa0010020 | Msa0598460 | 0.804312 | 2.294310e-49 | -8.615850e-47 |
| Msa0010020 | Msa0664760 | 0.809406 | 1.922695e-50 | -8.615850e-47 |
| Msa0010020 | Msa0671600 | 0.807643 | 4.573687e-50 | -8.615850e-47 |
| Msa0010020 | Msa0684350 | 0.802110 | 6.553313e-49 | -8.615850e-47 |
| Msa0010020 | Msa0684500 | 0.807557 | 4.769919e-50 | -8.615850e-47 |
| Msa0010020 | Msa0743680 | 0.806404 | 8.364323e-50 | -8.615850e-47 |
| Msa0010020 | Msa0754720 | -0.823723 | 1.188124e-53 | -8.615850e-47 |
| Msa0010020 | Msa0756630 | -0.804287 | 2.322786e-49 | -8.615850e-47 |
| Msa0010020 | Msa0784380 | 0.817575 | 3.071538e-52 | -8.615850e-47 |
| Msa0010020 | Msa0804680 | 0.807676 | 4.498494e-50 | -8.615850e-47 |
| Msa0010020 | Msa0818630 | 0.803357 | 3.622645e-49 | -8.615850e-47 |
| Msa0010020 | Msa0822990 | 0.802549 | 5.322115e-49 | -8.615850e-47 |
| Msa0010020 | Msa0829620 | 0.801305 | 9.584512e-49 | -8.615850e-47 |
| Msa0010020 | Msa0850710 | 0.800416 | 1.456069e-48 | -8.615850e-47 |
| Msa0010020 | Msa0863800 | 0.804355 | 2.248210e-49 | -8.615850e-47 |
| Msa0010020 | Msa0908170 | 0.814126 | 1.805831e-51 | -8.615850e-47 |
| Msa0010020 | Msa0944660 | 0.803003 | 4.289705e-49 | -8.615850e-47 |
| Msa0010020 | Msa0959010 | 0.807074 | 6.037223e-50 | -8.615850e-47 |
| Msa0010020 | Msa0967370 | 0.813104 | 3.031144e-51 | -8.615850e-47 |
| Msa0010020 | Msa0980940 | 0.825165 | 5.439665e-54 | -8.615850e-47 |
| Msa0010020 | Msa0993530 | 0.820582 | 6.357706e-53 | -8.615850e-47 |
| Msa0010020 | Msa1004420 | 0.815352 | 9.658943e-52 | -8.615850e-47 |
| Msa0010020 | Msa1032170 | 0.814373 | 1.592293e-51 | -8.615850e-47 |
| Msa0010020 | Msa1112390 | 0.804049 | 2.602659e-49 | -8.615850e-47 |
| Msa0010020 | Msa1174850 | 0.815422 | 9.322563e-52 | -8.615850e-47 |
| Msa0010020 | Msa1202150 | 0.803520 | 3.352641e-49 | -8.615850e-47 |
| Msa0010020 | Msa1217860 | 0.806876 | 6.647614e-50 | -8.615850e-47 |
| Msa0010020 | Msa1254710 | 0.812522 | 4.064399e-51 | -8.615850e-47 |
| Msa0010020 | Msa1269580 | -0.812111 | 4.996552e-51 | -8.615850e-47 |
| Msa0010020 | Msa1300860 | 0.803014 | 4.266622e-49 | -8.615850e-47 |
| Msa0010020 | Msa1306390 | 0.803813 | 2.914569e-49 | -8.615850e-47 |
| Msa0010020 | Msa1359650 | -0.800093 | 1.693837e-48 | -8.615850e-47 |
| Msa0010020 | Msa1362510 | 0.810401 | 1.173858e-50 | -8.615850e-47 |
| Msa0010020 | Msa1386230 | 0.801270 | 9.745523e-49 | -8.615850e-47 |
| Msa0010020 | Msa1390310 | 0.801130 | 1.040828e-48 | -8.615850e-47 |
| Msa0010020 | Msa1398860 | 0.824723 | 6.914541e-54 | -8.615850e-47 |
| Msa0010020 | Msa1404540 | 0.819830 | 9.449634e-53 | -8.615850e-47 |
| Msa0010020 | Msa1428370 | 0.804231 | 2.385298e-49 | -8.615850e-47 |
| Msa0010020 | Msa1431060 | 0.814508 | 1.486294e-51 | -8.615850e-47 |
| Msa0010020 | Msa1439960 | 0.814862 | 1.240865e-51 | -8.615850e-47 |
| Msa0010020 | Msa1466090 | 0.833819 | 4.282502e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0010020 | MtrunA17_Chr1g0158981 | 96.071 | 280 | 9 | 1 | 1 | 280 | 1 | 278 | 0.0 | 551 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0010020 | AT5G53280.1 | 51.648 | 273 | 117 | 6 | 12 | 280 | 11 | 272 | 1.81e-85 | 257 |
Find 81 sgRNAs with CRISPR-Local
Find 325 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATCCACATATGGATATT+AGG | 0.166622 | 1_1:+14976664 | None:intergenic |
| CTAATCATGAACATTCATTT+AGG | 0.181348 | 1_1:-14977377 | Msa0010020:CDS |
| AATGACACCAAACTCCATTT+TGG | 0.195144 | 1_1:+14977050 | None:intergenic |
| AAACTCTCATCTGCACATTT+TGG | 0.229219 | 1_1:+14977564 | None:intergenic |
| TTTAGTGAGTTTGCCCAAAA+TGG | 0.242298 | 1_1:-14977064 | Msa0010020:three_prime_UTR |
| ATCTCTTGGGTTGGATCATA+TGG | 0.284716 | 1_1:-14977469 | Msa0010020:CDS |
| AAGCGATTCTCGAGAAAATC+TGG | 0.314078 | 1_1:-14981541 | Msa0010020:CDS |
| AAATCCACATATGGATATTA+GGG | 0.324519 | 1_1:+14976665 | None:intergenic |
| TAATCATGAACATTCATTTA+GGG | 0.333045 | 1_1:-14977376 | Msa0010020:CDS |
| GAAGGGAGAATAGGCTAAAA+TGG | 0.339471 | 1_1:-14977099 | Msa0010020:three_prime_UTR |
| TGCATATGCTTATACTTAGT+TGG | 0.350080 | 1_1:-14976922 | Msa0010020:three_prime_UTR |
| TGTCTGTCGATTCACACTTC+TGG | 0.364505 | 1_1:-14976945 | Msa0010020:three_prime_UTR |
| AGATGCTGCGATTGCACGTC+TGG | 0.365548 | 1_1:-14977724 | Msa0010020:CDS |
| CGCGTTTCGATGAAATGAAA+TGG | 0.384371 | 1_1:-14981586 | Msa0010020:exon |
| GATATTAGGGAATCATTTGT+TGG | 0.387583 | 1_1:+14976678 | None:intergenic |
| TCTTCGTCCAGTGCCCATTC+TGG | 0.392364 | 1_1:-14977297 | Msa0010020:CDS |
| ATTAGACCTCTTCCCTTTCT+CGG | 0.403823 | 1_1:+14977536 | None:intergenic |
| ATGCAACCAGTGCAAACTTT+CGG | 0.413702 | 1_1:+14977005 | None:intergenic |
| GAGAAAATGAGATCGTGAAA+TGG | 0.415279 | 1_1:+14981484 | None:intergenic |
| TACAAAGGAGGTCTGAAATC+TGG | 0.423596 | 1_1:-14977128 | Msa0010020:three_prime_UTR |
| TCATTTCACCACATTGATAG+AGG | 0.444384 | 1_1:+14977236 | None:intergenic |
| AACATCCAAGTTACCAGAAT+GGG | 0.447938 | 1_1:+14977284 | None:intergenic |
| TGCTTTGCTTCAGTTGCAGC+AGG | 0.453364 | 1_1:-14977403 | Msa0010020:CDS |
| TGTGAAGAAATCTCTTGGGT+TGG | 0.467925 | 1_1:-14977478 | Msa0010020:CDS |
| AGTTTGCCCAAAATGGAGTT+TGG | 0.468174 | 1_1:-14977057 | Msa0010020:three_prime_UTR |
| ATTAACACAAAATCCACATA+TGG | 0.470594 | 1_1:+14976656 | None:intergenic |
| CATTTGTTGGATTAATAAAG+AGG | 0.472326 | 1_1:+14976691 | None:intergenic |
| GATCATATGGGCGGAATAGT+AGG | 0.483113 | 1_1:-14977456 | Msa0010020:CDS |
| CAGTGCCCATTCTGGTAACT+TGG | 0.483764 | 1_1:-14977289 | Msa0010020:CDS |
| TGGTCTGGTGAAGGGAGAAT+AGG | 0.490970 | 1_1:-14977108 | Msa0010020:three_prime_UTR |
| AACACGCTGCTGAGTCTGAA+TGG | 0.492537 | 1_1:+14977752 | None:intergenic |
| AGGAGGTCTGAAATCTGGTC+TGG | 0.503185 | 1_1:-14977123 | Msa0010020:three_prime_UTR |
| TATGAGAAGAACAGCTCACT+TGG | 0.505741 | 1_1:-14977325 | Msa0010020:CDS |
| AATGAAATGGAACACGCAAA+TGG | 0.509169 | 1_1:-14981573 | Msa0010020:CDS |
| AATAGTAGGAAATGCTGCTC+TGG | 0.514034 | 1_1:-14977442 | Msa0010020:CDS |
| CACAAAAGATTCTACTAAGT+GGG | 0.524552 | 1_1:+14976801 | None:intergenic |
| TGATAACGCGTGAGAGATGT+AGG | 0.527246 | 1_1:-14976971 | Msa0010020:three_prime_UTR |
| ACTTGTTCTTGCAATGAGAC+TGG | 0.528222 | 1_1:-14977691 | Msa0010020:CDS |
| TTTCATCTTGATTACAAAGG+AGG | 0.529591 | 1_1:-14977140 | Msa0010020:three_prime_UTR |
| TCACAAAAGATTCTACTAAG+TGG | 0.534864 | 1_1:+14976800 | None:intergenic |
| GGTAATAACGGTAACGGTCA+CGG | 0.538527 | 1_1:-14981389 | Msa0010020:CDS |
| TAAACTAAAGCACACAAGAA+AGG | 0.538645 | 1_1:+14976871 | None:intergenic |
| TCACATGAAAATACTCGAGC+TGG | 0.544030 | 1_1:+14981258 | None:intergenic |
| AAACATCCAAGTTACCAGAA+TGG | 0.546101 | 1_1:+14977283 | None:intergenic |
| TCTGAAATCTGGTCTGGTGA+AGG | 0.550178 | 1_1:-14977117 | Msa0010020:three_prime_UTR |
| TGAGGGTTTGCTTGATGACA+AGG | 0.550438 | 1_1:+14981667 | None:intergenic |
| TTGCCGCCGAAAGTTTGCAC+TGG | 0.552787 | 1_1:-14977011 | Msa0010020:three_prime_UTR |
| CTGAAATCTGGTCTGGTGAA+GGG | 0.553288 | 1_1:-14977116 | Msa0010020:three_prime_UTR |
| TCTCTTGGGTTGGATCATAT+GGG | 0.556457 | 1_1:-14977468 | Msa0010020:CDS |
| AAGACTCTTCGCTTCATGAA+CGG | 0.561836 | 1_1:+14981316 | None:intergenic |
| ACGACACCGGAGGGTAATAA+CGG | 0.566312 | 1_1:-14981401 | Msa0010020:CDS |
| AAAGCACACAAGAAAGGTGC+AGG | 0.573277 | 1_1:+14976877 | None:intergenic |
| CCGTTACCGTTATTACCCTC+CGG | 0.578622 | 1_1:+14981395 | None:intergenic |
| GATTCCCTAATATCCATATG+TGG | 0.585016 | 1_1:-14976669 | Msa0010020:three_prime_UTR |
| TTGTTTCATCTTGATTACAA+AGG | 0.589749 | 1_1:-14977143 | Msa0010020:three_prime_UTR |
| TTGTAGCCGAGAAAGGGAAG+AGG | 0.590752 | 1_1:-14977542 | Msa0010020:CDS |
| AGCGATTCTCGAGAAAATCT+GGG | 0.598287 | 1_1:-14981540 | Msa0010020:CDS |
| CAAGTTACCAGAATGGGCAC+TGG | 0.598404 | 1_1:+14977290 | None:intergenic |
| GTCTTCAAGATTCTCAAGCG+CGG | 0.605195 | 1_1:+14981280 | None:intergenic |
| TCATCAACATCGTCATTCAC+CGG | 0.607132 | 1_1:+14981341 | None:intergenic |
| ATCAATGTGGTGAAATGACG+AGG | 0.620196 | 1_1:-14977231 | Msa0010020:three_prime_UTR |
| GTTTGCTTGATGACAAGGGA+AGG | 0.621517 | 1_1:+14981672 | None:intergenic |
| AAGCAAAGCAATCATACTAA+CGG | 0.628861 | 1_1:+14977416 | None:intergenic |
| TGTTGCTAGCGAAACGACAC+CGG | 0.631231 | 1_1:-14981414 | Msa0010020:CDS |
| TGATGAAGAATGAAGAGTGA+GGG | 0.640670 | 1_1:+14981650 | None:intergenic |
| AGAATACATTACTGTTGCAA+TGG | 0.641597 | 1_1:-14976778 | Msa0010020:three_prime_UTR |
| TGCTAGCGAAACGACACCGG+AGG | 0.643973 | 1_1:-14981411 | Msa0010020:CDS |
| TTGTAATCAAGATGAAACAA+AGG | 0.647840 | 1_1:+14977146 | None:intergenic |
| GCTAGCGAAACGACACCGGA+GGG | 0.647863 | 1_1:-14981410 | Msa0010020:CDS |
| TGTTCTTGCAATGAGACTGG+CGG | 0.651653 | 1_1:-14977688 | Msa0010020:CDS |
| CCGGAGGGTAATAACGGTAA+CGG | 0.662896 | 1_1:-14981395 | Msa0010020:CDS |
| CAACCAGTGCAAACTTTCGG+CGG | 0.677044 | 1_1:+14977008 | None:intergenic |
| GAGGGTTTGCTTGATGACAA+GGG | 0.684665 | 1_1:+14981668 | None:intergenic |
| CTTGGGTTGGATCATATGGG+CGG | 0.685255 | 1_1:-14977465 | Msa0010020:CDS |
| TAGTTGGATAGCGTCATCTG+TGG | 0.687210 | 1_1:-14976906 | Msa0010020:three_prime_UTR |
| GGGAGAATAGGCTAAAATGG+AGG | 0.709595 | 1_1:-14977096 | Msa0010020:three_prime_UTR |
| TCAATGTGGTGAAATGACGA+GGG | 0.709734 | 1_1:-14977230 | Msa0010020:three_prime_UTR |
| GGGTTAAACCTCTATCAATG+TGG | 0.710574 | 1_1:-14977244 | Msa0010020:three_prime_UTR |
| ATGAGACTGGCGGAACATCG+TGG | 0.714608 | 1_1:-14977678 | Msa0010020:CDS |
| GTGATGAAGAATGAAGAGTG+AGG | 0.728235 | 1_1:+14981649 | None:intergenic |
| GCAGATGTACATGATGCTAG+CGG | 0.758662 | 1_1:-14977615 | Msa0010020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTATTACAAAATTATG+TGG | - | chr1_1:14977298-14977317 | Msa0010020:CDS | 10.0% |
| !!! | ACAATTTTTTTTTTTTTTTG+AGG | - | chr1_1:14977424-14977443 | Msa0010020:CDS | 10.0% |
| !!! | CAATTTTTTTTTTTTTTTGA+GGG | - | chr1_1:14977425-14977444 | Msa0010020:CDS | 10.0% |
| !! | TGATAAAGTAATTATTTAAT+AGG | - | chr1_1:14977499-14977518 | Msa0010020:CDS | 10.0% |
| !! | GATAAAGTAATTATTTAATA+GGG | - | chr1_1:14977500-14977519 | Msa0010020:CDS | 10.0% |
| !!! | ATTATTGTTTGAATTTTATA+TGG | - | chr1_1:14978576-14978595 | Msa0010020:intron | 10.0% |
| !!! | TTATTGTTTGAATTTTATAT+GGG | - | chr1_1:14978577-14978596 | Msa0010020:intron | 10.0% |
| !!! | AGAGATTTTTTATTTTTTTT+TGG | + | chr1_1:14979925-14979944 | None:intergenic | 10.0% |
| !!! | GTTTTTATGATTTGAAATTT+TGG | - | chr1_1:14977224-14977243 | Msa0010020:three_prime_UTR | 15.0% |
| !!! | TGACTTAATTATGTTTTAAT+CGG | - | chr1_1:14977541-14977560 | Msa0010020:CDS | 15.0% |
| !!! | TCTACAATAAAATTGTATTT+TGG | + | chr1_1:14977778-14977797 | None:intergenic | 15.0% |
| !! | ACTATTATTAATGATTGAAT+AGG | - | chr1_1:14977803-14977822 | Msa0010020:intron | 15.0% |
| !! | CTATTATTAATGATTGAATA+GGG | - | chr1_1:14977804-14977823 | Msa0010020:intron | 15.0% |
| !!! | GTTATATATTGTTCATTTTA+AGG | + | chr1_1:14977888-14977907 | None:intergenic | 15.0% |
| !!! | TACAAATAATTTAAAGCAAA+AGG | + | chr1_1:14978304-14978323 | None:intergenic | 15.0% |
| !!! | ATTATTTGTAAGTTTTGATT+TGG | - | chr1_1:14978314-14978333 | Msa0010020:intron | 15.0% |
| !! | GATTTAATTAATTGTCAATT+AGG | - | chr1_1:14978486-14978505 | Msa0010020:intron | 15.0% |
| !! | TATAAAAATGAGTATTATGT+TGG | + | chr1_1:14978892-14978911 | None:intergenic | 15.0% |
| !!! | AATTTTAAAGCATTGTTATT+CGG | - | chr1_1:14979258-14979277 | Msa0010020:intron | 15.0% |
| !! | TCAAATAAAAAATTTCTATG+TGG | - | chr1_1:14979556-14979575 | Msa0010020:intron | 15.0% |
| !!! | GATTTTTTATTTTTTTTTGG+TGG | + | chr1_1:14979922-14979941 | None:intergenic | 15.0% |
| !!! | TTTTTGTTGAATTTGATTCT+AGG | - | chr1_1:14977157-14977176 | Msa0010020:three_prime_UTR | 20.0% |
| !!! | TTTTGTTGAATTTGATTCTA+GGG | - | chr1_1:14977158-14977177 | Msa0010020:three_prime_UTR | 20.0% |
| !! | TTATCAACTCAAATTCAAAA+AGG | + | chr1_1:14977485-14977504 | None:intergenic | 20.0% |
| !!! | AGTGGTTATATTTTCTATAT+GGG | + | chr1_1:14977852-14977871 | None:intergenic | 20.0% |
| !!! | AAGTGGTTATATTTTCTATA+TGG | + | chr1_1:14977853-14977872 | None:intergenic | 20.0% |
| !! | TGTTCTTAAACTTCTTATTA+TGG | + | chr1_1:14977924-14977943 | None:intergenic | 20.0% |
| !! | TTCGTTATGATTTATGAAAT+GGG | + | chr1_1:14978091-14978110 | None:intergenic | 20.0% |
| !! | TTTCGTTATGATTTATGAAA+TGG | + | chr1_1:14978092-14978111 | None:intergenic | 20.0% |
| !!! | GTATTTTGTAATTTCTTATG+AGG | - | chr1_1:14978155-14978174 | Msa0010020:intron | 20.0% |
| !! | CAAACAATAATATTGAAACA+CGG | + | chr1_1:14978567-14978586 | None:intergenic | 20.0% |
| !! | GTTACAATATTACATTAGTT+TGG | + | chr1_1:14979004-14979023 | None:intergenic | 20.0% |
| !!! | AAGATACAACCAATTAATTT+TGG | - | chr1_1:14979211-14979230 | Msa0010020:intron | 20.0% |
| !!! | AGACCATTATTTTTTAACTT+AGG | - | chr1_1:14979347-14979366 | Msa0010020:intron | 20.0% |
| !! | TCTCCTAAGTTAAAAAATAA+TGG | + | chr1_1:14979353-14979372 | None:intergenic | 20.0% |
| !! | TAATTATACTGAAAATGGTA+AGG | + | chr1_1:14979617-14979636 | None:intergenic | 20.0% |
| !! | AATCCCTAATGATTAATATT+TGG | - | chr1_1:14979796-14979815 | Msa0010020:intron | 20.0% |
| !! | ATCCCTAATGATTAATATTT+GGG | - | chr1_1:14979797-14979816 | Msa0010020:intron | 20.0% |
| !! | AACCCAAATATTAATCATTA+GGG | + | chr1_1:14979802-14979821 | None:intergenic | 20.0% |
| !! | AAACCCAAATATTAATCATT+AGG | + | chr1_1:14979803-14979822 | None:intergenic | 20.0% |
| !!! | TTTTTATTTTTTTTTGGTGG+TGG | + | chr1_1:14979919-14979938 | None:intergenic | 20.0% |
| !!! | TTAATGGGTATAAGAATATT+TGG | + | chr1_1:14980192-14980211 | None:intergenic | 20.0% |
| !!! | GTTTTGTTAGAAGTATTAAT+GGG | + | chr1_1:14980207-14980226 | None:intergenic | 20.0% |
| !!! | TGTTTTGTTAGAAGTATTAA+TGG | + | chr1_1:14980208-14980227 | None:intergenic | 20.0% |
| !! | GATTTAATGAGTTAATGTAA+AGG | - | chr1_1:14980368-14980387 | Msa0010020:intron | 20.0% |
| !! | TAATGTAAAGGATTCTTATT+TGG | - | chr1_1:14980380-14980399 | Msa0010020:intron | 20.0% |
| !! | TTCAAAAAATAAACAAGATG+TGG | + | chr1_1:14980554-14980573 | None:intergenic | 20.0% |
| !!! | TCTTGTTTATTTTTTGAACA+TGG | - | chr1_1:14980556-14980575 | Msa0010020:intron | 20.0% |
| !! | TAATCATGAACATTCATTTA+GGG | - | chr1_1:14980996-14981015 | Msa0010020:intron | 20.0% |
| !! | ACAAAAAAAATCAAGGTAAA+AGG | + | chr1_1:14981540-14981559 | None:intergenic | 20.0% |
| !! | AAAACGAACAAAAAAAATCA+AGG | + | chr1_1:14981547-14981566 | None:intergenic | 20.0% |
| !! | TTGTTTATGTGAAGGATTTT+CGG | - | chr1_1:14977008-14977027 | Msa0010020:three_prime_UTR | 25.0% |
| !! | CACTTTATGATTTGAGATTT+AGG | - | chr1_1:14977367-14977386 | Msa0010020:CDS | 25.0% |
| !!! | TTTTTTTTTTGAGGGATGAT+AGG | - | chr1_1:14977433-14977452 | Msa0010020:CDS | 25.0% |
| ! | TTAATAGGGTTAATTAGCAT+TGG | - | chr1_1:14977514-14977533 | Msa0010020:CDS | 25.0% |
| ! | TAAGGAATAAATAGAGAAAG+TGG | + | chr1_1:14977870-14977889 | None:intergenic | 25.0% |
| !! | TGTTCACATCATTCATTTTA+TGG | + | chr1_1:14978218-14978237 | None:intergenic | 25.0% |
| ! | TAAAATGAATGATGTGAACA+TGG | - | chr1_1:14978218-14978237 | Msa0010020:intron | 25.0% |
| ! | AAAATGAATGATGTGAACAT+GGG | - | chr1_1:14978219-14978238 | Msa0010020:intron | 25.0% |
| !!! | AGTTTTGATTTGGAATATTC+TGG | - | chr1_1:14978324-14978343 | Msa0010020:intron | 25.0% |
| ! | TAATGTCAGTTCAGATTAAA+TGG | - | chr1_1:14978633-14978652 | Msa0010020:intron | 25.0% |
| !! | TTTTAGGCAATAGAGAAAAT+TGG | - | chr1_1:14978767-14978786 | Msa0010020:intron | 25.0% |
| !! | ACAATATTACATTAGTTTGG+TGG | + | chr1_1:14979001-14979020 | None:intergenic | 25.0% |
| ! | TATATTTGTAACAAGCTAAG+AGG | + | chr1_1:14979063-14979082 | None:intergenic | 25.0% |
| ! | TTCTTACTTCTTTAGATTAG+CGG | + | chr1_1:14979482-14979501 | None:intergenic | 25.0% |
| ! | AAGTAAGAAGTTTATGTCTT+GGG | - | chr1_1:14979493-14979512 | Msa0010020:intron | 25.0% |
| !! | TTAATCATTAGGGATTTTGT+GGG | + | chr1_1:14979792-14979811 | None:intergenic | 25.0% |
| !! | ATTAATCATTAGGGATTTTG+TGG | + | chr1_1:14979793-14979812 | None:intergenic | 25.0% |
| !!! | TCAGTATAATTAGGAGTATT+AGG | + | chr1_1:14980089-14980108 | None:intergenic | 25.0% |
| ! | CTTCTACTATCAGTATAATT+AGG | + | chr1_1:14980098-14980117 | None:intergenic | 25.0% |
| ! | AATAATATGTCTCATTGATC+TGG | + | chr1_1:14980144-14980163 | None:intergenic | 25.0% |
| ! | AAGTAACCCTAATTCTTTAA+CGG | - | chr1_1:14980252-14980271 | Msa0010020:intron | 25.0% |
| ! | ATCATGCATATATACATTGT+CGG | + | chr1_1:14980439-14980458 | None:intergenic | 25.0% |
| !!! | ATTTTTACCACGACTTTTTT+TGG | - | chr1_1:14980528-14980547 | Msa0010020:intron | 25.0% |
| !! | AATTTTGTGAAGAAATCTCT+TGG | - | chr1_1:14980889-14980908 | Msa0010020:intron | 25.0% |
| !! | ATTTTGTGAAGAAATCTCTT+GGG | - | chr1_1:14980890-14980909 | Msa0010020:intron | 25.0% |
| ! | CTAATCATGAACATTCATTT+AGG | - | chr1_1:14980995-14981014 | Msa0010020:intron | 25.0% |
| !!! | TTTTTTTCTTTATGCGCTTT+TGG | - | chr1_1:14981202-14981221 | Msa0010020:intron | 25.0% |
| ! | TTGTAATCAAGATGAAACAA+AGG | + | chr1_1:14981229-14981248 | None:intergenic | 25.0% |
| ! | TTGTTTCATCTTGATTACAA+AGG | - | chr1_1:14981229-14981248 | Msa0010020:intron | 25.0% |
| !!! | TAGTTGTTAGTTGTTGTTTT+TGG | - | chr1_1:14981656-14981675 | Msa0010020:five_prime_UTR | 25.0% |
| !! | CATTTGTTGGATTAATAAAG+AGG | + | chr1_1:14981684-14981703 | None:intergenic | 25.0% |
| ! | AAATCCACATATGGATATTA+GGG | + | chr1_1:14981710-14981729 | None:intergenic | 25.0% |
| ! | AAAATCCACATATGGATATT+AGG | + | chr1_1:14981711-14981730 | None:intergenic | 25.0% |
| ! | ATTAACACAAAATCCACATA+TGG | + | chr1_1:14981719-14981738 | None:intergenic | 25.0% |
| !! | TTGAATTTGATTCTAGGGTT+TGG | - | chr1_1:14977163-14977182 | Msa0010020:three_prime_UTR | 30.0% |
| ! | TTAGGTTAATTGACTCTTTG+AGG | - | chr1_1:14977385-14977404 | Msa0010020:CDS | 30.0% |
| ! | TCTTTGAGGAAATGAATGAT+AGG | - | chr1_1:14977399-14977418 | Msa0010020:CDS | 30.0% |
| AACAATTGTTTGTGAGAAAC+TGG | - | chr1_1:14977750-14977769 | Msa0010020:CDS | 30.0% | |
| AAGTTTAAGAACATCCACAA+TGG | - | chr1_1:14977931-14977950 | Msa0010020:intron | 30.0% | |
| ! | TATTTAGTGTGGTGCTAAAT+AGG | + | chr1_1:14977974-14977993 | None:intergenic | 30.0% |
| TATTTAGCACCACACTAAAT+AGG | - | chr1_1:14977973-14977992 | Msa0010020:intron | 30.0% | |
| AAATGTTATACTCCACAATG+GGG | + | chr1_1:14978002-14978021 | None:intergenic | 30.0% | |
| CAAATGTTATACTCCACAAT+GGG | + | chr1_1:14978003-14978022 | None:intergenic | 30.0% | |
| CATTGTGGAGTATAACATTT+GGG | - | chr1_1:14978002-14978021 | Msa0010020:intron | 30.0% | |
| !! | AAAGTATTGTCCAACTAAAC+TGG | + | chr1_1:14978376-14978395 | None:intergenic | 30.0% |
| AACTGACATTAAAAAGCTCT+CGG | + | chr1_1:14978624-14978643 | None:intergenic | 30.0% | |
| CTGTATTCTGCAGTAAATTT+AGG | - | chr1_1:14978659-14978678 | Msa0010020:intron | 30.0% | |
| ! | GACTCTCAACAATGAATTTT+AGG | - | chr1_1:14978751-14978770 | Msa0010020:intron | 30.0% |
| ! | GTTATTTCATATGATACACG+TGG | - | chr1_1:14978841-14978860 | Msa0010020:intron | 30.0% |
| TAGTTTACGCTACTAAACAT+AGG | + | chr1_1:14978936-14978955 | None:intergenic | 30.0% | |
| TATTGTAACACACAAACACT+TGG | - | chr1_1:14979015-14979034 | Msa0010020:intron | 30.0% | |
| TCATGCAGTCCAAAATTAAT+TGG | + | chr1_1:14979223-14979242 | None:intergenic | 30.0% | |
| !! | TTTAAAGCATTGTTATTCGG+TGG | - | chr1_1:14979261-14979280 | Msa0010020:intron | 30.0% |
| GCATATTAAGTAAAAACGTG+AGG | + | chr1_1:14979303-14979322 | None:intergenic | 30.0% | |
| ! | AACAAGTTTTCAAAGCTCTT+AGG | + | chr1_1:14979376-14979395 | None:intergenic | 30.0% |
| !! | TAAGAGCTTTGAAAACTTGT+TGG | - | chr1_1:14979375-14979394 | Msa0010020:intron | 30.0% |
| !! | AAGAGCTTTGAAAACTTGTT+GGG | - | chr1_1:14979376-14979395 | Msa0010020:intron | 30.0% |
| GAAGTAAGAAGTTTATGTCT+TGG | - | chr1_1:14979492-14979511 | Msa0010020:intron | 30.0% | |
| CGCTCTAATTATACTGAAAA+TGG | + | chr1_1:14979622-14979641 | None:intergenic | 30.0% | |
| !!! | AGGTATTTGAGTGGTTTTAT+AGG | + | chr1_1:14979768-14979787 | None:intergenic | 30.0% |
| ! | TAATCATTAGGGATTTTGTG+GGG | + | chr1_1:14979791-14979810 | None:intergenic | 30.0% |
| GACAATGCATAATATATGCA+TGG | - | chr1_1:14979874-14979893 | Msa0010020:intron | 30.0% | |
| TCAATAGAACTAATGTTCCA+TGG | - | chr1_1:14980314-14980333 | Msa0010020:intron | 30.0% | |
| AACGGTAAGTTTGTATAACA+GGG | - | chr1_1:14980337-14980356 | Msa0010020:intron | 30.0% | |
| !! | GTTTTTCATCTAGTTTCTTC+TGG | - | chr1_1:14980464-14980483 | Msa0010020:intron | 30.0% |
| TAAGCATGCAATTAACTGAT+TGG | + | chr1_1:14980506-14980525 | None:intergenic | 30.0% | |
| TTGAGACAAAAACATTGATG+AGG | + | chr1_1:14980864-14980883 | None:intergenic | 30.0% | |
| AAGCAAAGCAATCATACTAA+CGG | + | chr1_1:14980959-14980978 | None:intergenic | 30.0% | |
| !!! | TGGTAACTTGGATGTTTTTT+TGG | - | chr1_1:14981095-14981114 | Msa0010020:intron | 30.0% |
| TTTCATCTTGATTACAAAGG+AGG | - | chr1_1:14981232-14981251 | Msa0010020:intron | 30.0% | |
| TGCATATGCTTATACTTAGT+TGG | - | chr1_1:14981450-14981469 | Msa0010020:CDS | 30.0% | |
| TAAACTAAAGCACACAAGAA+AGG | + | chr1_1:14981504-14981523 | None:intergenic | 30.0% | |
| CACAAAAGATTCTACTAAGT+GGG | + | chr1_1:14981574-14981593 | None:intergenic | 30.0% | |
| TCACAAAAGATTCTACTAAG+TGG | + | chr1_1:14981575-14981594 | None:intergenic | 30.0% | |
| AGAATACATTACTGTTGCAA+TGG | - | chr1_1:14981594-14981613 | Msa0010020:exon | 30.0% | |
| GATATTAGGGAATCATTTGT+TGG | + | chr1_1:14981697-14981716 | None:intergenic | 30.0% | |
| ! | ATGACAAGGGAAGGAATTTT+TGG | + | chr1_1:14976694-14976713 | None:intergenic | 35.0% |
| TGATGAAGAATGAAGAGTGA+GGG | + | chr1_1:14976725-14976744 | None:intergenic | 35.0% | |
| GAACGCGATTATGAAAAAAG+CGG | + | chr1_1:14976758-14976777 | None:intergenic | 35.0% | |
| AATGAAATGGAACACGCAAA+TGG | - | chr1_1:14976799-14976818 | Msa0010020:three_prime_UTR | 35.0% | |
| GAGAAAATGAGATCGTGAAA+TGG | + | chr1_1:14976891-14976910 | None:intergenic | 35.0% | |
| !!! | TCACGGTTTTGTTTATGTGA+AGG | - | chr1_1:14977000-14977019 | Msa0010020:three_prime_UTR | 35.0% |
| !! | GGTTTGGTGTATTACGAATT+AGG | - | chr1_1:14977179-14977198 | Msa0010020:three_prime_UTR | 35.0% |
| ATAGGTTACAATTGCGTGTA+GGG | - | chr1_1:14977451-14977470 | Msa0010020:CDS | 35.0% | |
| ! | TAGGGTTAATTAGCATTGGA+TGG | - | chr1_1:14977518-14977537 | Msa0010020:CDS | 35.0% |
| TTTGTTCTTAATCGCGTTTG+TGG | - | chr1_1:14977658-14977677 | Msa0010020:CDS | 35.0% | |
| TTTAAGAACATCCACAATGG+TGG | - | chr1_1:14977934-14977953 | Msa0010020:intron | 35.0% | |
| TTAAGAACATCCACAATGGT+GGG | - | chr1_1:14977935-14977954 | Msa0010020:intron | 35.0% | |
| AATGTTATACTCCACAATGG+GGG | + | chr1_1:14978001-14978020 | None:intergenic | 35.0% | |
| CCAAATGTTATACTCCACAA+TGG | + | chr1_1:14978004-14978023 | None:intergenic | 35.0% | |
| CCATTGTGGAGTATAACATT+TGG | - | chr1_1:14978001-14978020 | Msa0010020:intron | 35.0% | |
| TGTAATTTCTTATGAGGTGC+TGG | - | chr1_1:14978161-14978180 | Msa0010020:intron | 35.0% | |
| ! | GTAATTTCTTATGAGGTGCT+GGG | - | chr1_1:14978162-14978181 | Msa0010020:intron | 35.0% |
| AGTATCATACGTGTTCTACT+AGG | - | chr1_1:14978350-14978369 | Msa0010020:intron | 35.0% | |
| TGGACAAACAAAAGGAATGT+TGG | - | chr1_1:14978434-14978453 | Msa0010020:intron | 35.0% | |
| ! | AAGTTTGACTTTCAAACAGC+AGG | - | chr1_1:14978517-14978536 | Msa0010020:intron | 35.0% |
| ! | AGTTTGACTTTCAAACAGCA+GGG | - | chr1_1:14978518-14978537 | Msa0010020:intron | 35.0% |
| AGGCAATAGAGAAAATTGGA+AGG | - | chr1_1:14978771-14978790 | Msa0010020:intron | 35.0% | |
| ! | TGTTGAGGCAATTTTCTGTT+GGG | + | chr1_1:14979089-14979108 | None:intergenic | 35.0% |
| ! | ATGTTGAGGCAATTTTCTGT+TGG | + | chr1_1:14979090-14979109 | None:intergenic | 35.0% |
| TTGTGTATGCGATACTACAA+GGG | + | chr1_1:14979326-14979345 | None:intergenic | 35.0% | |
| ATTGTGTATGCGATACTACA+AGG | + | chr1_1:14979327-14979346 | None:intergenic | 35.0% | |
| TGAAAATGGTAAGGAAGAGT+TGG | + | chr1_1:14979608-14979627 | None:intergenic | 35.0% | |
| CAGTATAATTAGAGCGTAGA+TGG | - | chr1_1:14979626-14979645 | Msa0010020:intron | 35.0% | |
| ATGAGGACAAACTGAAATTC+AGG | + | chr1_1:14979833-14979852 | None:intergenic | 35.0% | |
| CATAATATATGCATGGTCCA+GGG | - | chr1_1:14979881-14979900 | Msa0010020:intron | 35.0% | |
| !!! | TATTTTTTTTTGGTGGTGGC+CGG | + | chr1_1:14979915-14979934 | None:intergenic | 35.0% |
| ACAATAGTATTGTCTCAGCA+TGG | + | chr1_1:14980024-14980043 | None:intergenic | 35.0% | |
| ATTAGGTACATAGTATACCC+AGG | + | chr1_1:14980072-14980091 | None:intergenic | 35.0% | |
| TCCAGACCGTTAAAGAATTA+GGG | + | chr1_1:14980261-14980280 | None:intergenic | 35.0% | |
| ATCCAGACCGTTAAAGAATT+AGG | + | chr1_1:14980262-14980281 | None:intergenic | 35.0% | |
| AGAACTAATGTTCCATGGAA+CGG | - | chr1_1:14980319-14980338 | Msa0010020:intron | 35.0% | |
| TATACAAACTTACCGTTCCA+TGG | + | chr1_1:14980334-14980353 | None:intergenic | 35.0% | |
| GAACGGTAAGTTTGTATAAC+AGG | - | chr1_1:14980336-14980355 | Msa0010020:intron | 35.0% | |
| ACGGTAAGTTTGTATAACAG+GGG | - | chr1_1:14980338-14980357 | Msa0010020:intron | 35.0% | |
| GGTCTACATATCATACAGAA+AGG | + | chr1_1:14980602-14980621 | None:intergenic | 35.0% | |
| CAAAAACTTCAGGTGAAACA+AGG | + | chr1_1:14980783-14980802 | None:intergenic | 35.0% | |
| ! | CTTGTTTCACCTGAAGTTTT+TGG | - | chr1_1:14980781-14980800 | Msa0010020:intron | 35.0% |
| TTTGGTTGTCCAAAAACTTC+AGG | + | chr1_1:14980793-14980812 | None:intergenic | 35.0% | |
| ! | AAACTCTCATCTGCACATTT+TGG | + | chr1_1:14980811-14980830 | None:intergenic | 35.0% |
| AACATCCAAGTTACCAGAAT+GGG | + | chr1_1:14981091-14981110 | None:intergenic | 35.0% | |
| AAACATCCAAGTTACCAGAA+TGG | + | chr1_1:14981092-14981111 | None:intergenic | 35.0% | |
| !!! | TTGGATGTTTTTTTGGCTAG+AGG | - | chr1_1:14981102-14981121 | Msa0010020:intron | 35.0% |
| !!! | TGTTTTTTTGGCTAGAGGTT+AGG | - | chr1_1:14981107-14981126 | Msa0010020:intron | 35.0% |
| !!! | GTTTTTTTGGCTAGAGGTTA+GGG | - | chr1_1:14981108-14981127 | Msa0010020:intron | 35.0% |
| TTTAGTGAGTTTGCCCAAAA+TGG | - | chr1_1:14981308-14981327 | Msa0010020:CDS | 35.0% | |
| ! | ATGACACCAAACTCCATTTT+GGG | + | chr1_1:14981324-14981343 | None:intergenic | 35.0% |
| ! | AATGACACCAAACTCCATTT+TGG | + | chr1_1:14981325-14981344 | None:intergenic | 35.0% |
| GATTCCCTAATATCCATATG+TGG | - | chr1_1:14981703-14981722 | Msa0010020:five_prime_UTR | 35.0% | |
| !!! | CGTTGTGTCGTTTTTTGTAG+AGG | + | chr1_1:14976666-14976685 | None:intergenic | 40.0% |
| GTGATGAAGAATGAAGAGTG+AGG | + | chr1_1:14976726-14976745 | None:intergenic | 40.0% | |
| CGCGTTTCGATGAAATGAAA+TGG | - | chr1_1:14976786-14976805 | Msa0010020:three_prime_UTR | 40.0% | |
| AAGCGATTCTCGAGAAAATC+TGG | - | chr1_1:14976831-14976850 | Msa0010020:three_prime_UTR | 40.0% | |
| AGCGATTCTCGAGAAAATCT+GGG | - | chr1_1:14976832-14976851 | Msa0010020:three_prime_UTR | 40.0% | |
| ! | TTATGTGAAGGATTTTCGGC+CGG | - | chr1_1:14977012-14977031 | Msa0010020:three_prime_UTR | 40.0% |
| TCATCAACATCGTCATTCAC+CGG | + | chr1_1:14977034-14977053 | None:intergenic | 40.0% | |
| AAGACTCTTCGCTTCATGAA+CGG | + | chr1_1:14977059-14977078 | None:intergenic | 40.0% | |
| TCACATGAAAATACTCGAGC+TGG | + | chr1_1:14977117-14977136 | None:intergenic | 40.0% | |
| GATAGGTTACAATTGCGTGT+AGG | - | chr1_1:14977450-14977469 | Msa0010020:CDS | 40.0% | |
| GTATAACATTTGGGTGCCTA+TGG | - | chr1_1:14978011-14978030 | Msa0010020:intron | 40.0% | |
| TTCTACTAGGCCAGTTTAGT+TGG | - | chr1_1:14978363-14978382 | Msa0010020:intron | 40.0% | |
| AACCCACATTGTCATTCCTT+GGG | + | chr1_1:14978415-14978434 | None:intergenic | 40.0% | |
| !! | ATGTGGGTTGGACAAACAAA+AGG | - | chr1_1:14978426-14978445 | Msa0010020:intron | 40.0% |
| GGCATAGCAAAGAAATTTGC+AGG | + | chr1_1:14978705-14978724 | None:intergenic | 40.0% | |
| CAACAATGTGGTACTGTGAT+TGG | + | chr1_1:14978726-14978745 | None:intergenic | 40.0% | |
| GAGAGTCAGAATCAACAATG+TGG | + | chr1_1:14978738-14978757 | None:intergenic | 40.0% | |
| TTGGAAGGTTGTCTGATAAG+TGG | - | chr1_1:14978786-14978805 | Msa0010020:intron | 40.0% | |
| TGGAAGGTTGTCTGATAAGT+GGG | - | chr1_1:14978787-14978806 | Msa0010020:intron | 40.0% | |
| TGATACACGTGGCAGAAATA+TGG | - | chr1_1:14978852-14978871 | Msa0010020:intron | 40.0% | |
| ! | GTTGAGGCAATTTTCTGTTG+GGG | + | chr1_1:14979088-14979107 | None:intergenic | 40.0% |
| GAAGCACGCATTATATGTTG+AGG | + | chr1_1:14979104-14979123 | None:intergenic | 40.0% | |
| CGTGCTTCATAATACATAGC+TGG | - | chr1_1:14979116-14979135 | Msa0010020:intron | 40.0% | |
| AAACAGCGTATCTTGAAGTC+AGG | - | chr1_1:14979159-14979178 | Msa0010020:intron | 40.0% | |
| TGTGTATGCGATACTACAAG+GGG | + | chr1_1:14979325-14979344 | None:intergenic | 40.0% | |
| ATTAGAGCGTAGATGGTCAT+TGG | - | chr1_1:14979633-14979652 | Msa0010020:intron | 40.0% | |
| AAACCTCTGTTGCAAACCAA+AGG | - | chr1_1:14979724-14979743 | Msa0010020:intron | 40.0% | |
| AACCTCTGTTGCAAACCAAA+GGG | - | chr1_1:14979725-14979744 | Msa0010020:intron | 40.0% | |
| ATGATCTTAGCTCAGTTGGT+AGG | - | chr1_1:14979851-14979870 | Msa0010020:intron | 40.0% | |
| ! | TGATCTTAGCTCAGTTGGTA+GGG | - | chr1_1:14979852-14979871 | Msa0010020:intron | 40.0% |
| GCATAATATATGCATGGTCC+AGG | - | chr1_1:14979880-14979899 | Msa0010020:intron | 40.0% | |
| !!! | ATTTTTTTTTGGTGGTGGCC+GGG | + | chr1_1:14979914-14979933 | None:intergenic | 40.0% |
| ! | TCTCTATTTTGCCGCAAAAG+TGG | - | chr1_1:14979940-14979959 | Msa0010020:intron | 40.0% |
| !! | TTCCTTGCAGTTGATAATCC+TGG | - | chr1_1:14980051-14980070 | Msa0010020:intron | 40.0% |
| !! | TCCTTGCAGTTGATAATCCT+GGG | - | chr1_1:14980052-14980071 | Msa0010020:intron | 40.0% |
| ACCCTAATTCTTTAACGGTC+TGG | - | chr1_1:14980257-14980276 | Msa0010020:intron | 40.0% | |
| !! | GTTTCTTCTGGAACATGAGA+AGG | - | chr1_1:14980476-14980495 | Msa0010020:intron | 40.0% |
| ACTTGTTCTTGCAATGAGAC+TGG | - | chr1_1:14980681-14980700 | Msa0010020:intron | 40.0% | |
| !! | AGAGTTTTGTAGCCGAGAAA+GGG | - | chr1_1:14980824-14980843 | Msa0010020:intron | 40.0% |
| ATTAGACCTCTTCCCTTTCT+CGG | + | chr1_1:14980839-14980858 | None:intergenic | 40.0% | |
| TGTGAAGAAATCTCTTGGGT+TGG | - | chr1_1:14980894-14980913 | Msa0010020:intron | 40.0% | |
| !! | ATCTCTTGGGTTGGATCATA+TGG | - | chr1_1:14980903-14980922 | Msa0010020:intron | 40.0% |
| !! | TCTCTTGGGTTGGATCATAT+GGG | - | chr1_1:14980904-14980923 | Msa0010020:intron | 40.0% |
| AATAGTAGGAAATGCTGCTC+TGG | - | chr1_1:14980930-14980949 | Msa0010020:intron | 40.0% | |
| TATGAGAAGAACAGCTCACT+TGG | - | chr1_1:14981047-14981066 | Msa0010020:intron | 40.0% | |
| ATCAATGTGGTGAAATGACG+AGG | - | chr1_1:14981141-14981160 | Msa0010020:intron | 40.0% | |
| TCAATGTGGTGAAATGACGA+GGG | - | chr1_1:14981142-14981161 | Msa0010020:intron | 40.0% | |
| ! | TACAAAGGAGGTCTGAAATC+TGG | - | chr1_1:14981244-14981263 | Msa0010020:intron | 40.0% |
| GAAGGGAGAATAGGCTAAAA+TGG | - | chr1_1:14981273-14981292 | Msa0010020:CDS | 40.0% | |
| AGTTTGCCCAAAATGGAGTT+TGG | - | chr1_1:14981315-14981334 | Msa0010020:CDS | 40.0% | |
| ATGCAACCAGTGCAAACTTT+CGG | + | chr1_1:14981370-14981389 | None:intergenic | 40.0% | |
| ! | GTTTGCTTGATGACAAGGGA+AGG | + | chr1_1:14976703-14976722 | None:intergenic | 45.0% |
| ! | GAGGGTTTGCTTGATGACAA+GGG | + | chr1_1:14976707-14976726 | None:intergenic | 45.0% |
| ! | TGAGGGTTTGCTTGATGACA+AGG | + | chr1_1:14976708-14976727 | None:intergenic | 45.0% |
| ! | GGTAATAACGGTAACGGTCA+CGG | - | chr1_1:14976983-14977002 | Msa0010020:three_prime_UTR | 45.0% |
| GTCTTCAAGATTCTCAAGCG+CGG | + | chr1_1:14977095-14977114 | None:intergenic | 45.0% | |
| ATTTGGGTGCCTATGGAGAA+GGG | - | chr1_1:14978018-14978037 | Msa0010020:intron | 45.0% | |
| AGTGAAGAGAGAGAGAGAGA+GGG | + | chr1_1:14978058-14978077 | None:intergenic | 45.0% | |
| AAGTGAAGAGAGAGAGAGAG+AGG | + | chr1_1:14978059-14978078 | None:intergenic | 45.0% | |
| !! | CTCTCTCTCTTCACTTTTCG+CGG | - | chr1_1:14978063-14978082 | Msa0010020:intron | 45.0% |
| !! | TTTCTTATGAGGTGCTGGGT+TGG | - | chr1_1:14978166-14978185 | Msa0010020:intron | 45.0% |
| ! | GGTGCTGGGTTGGAAAAAAT+TGG | - | chr1_1:14978176-14978195 | Msa0010020:intron | 45.0% |
| ! | GCTGGGTTGGAAAAAATTGG+TGG | - | chr1_1:14978179-14978198 | Msa0010020:intron | 45.0% |
| ACCCATTTAAGCACCCAATG+TGG | - | chr1_1:14978244-14978263 | Msa0010020:intron | 45.0% | |
| CCCACATTGGGTGCTTAAAT+GGG | + | chr1_1:14978248-14978267 | None:intergenic | 45.0% | |
| CCCATTTAAGCACCCAATGT+GGG | - | chr1_1:14978245-14978264 | Msa0010020:intron | 45.0% | |
| ACCCACATTGGGTGCTTAAA+TGG | + | chr1_1:14978249-14978268 | None:intergenic | 45.0% | |
| CACATGAATGTATGACCCCA+AGG | - | chr1_1:14978396-14978415 | Msa0010020:intron | 45.0% | |
| ACCCCAAGGAATGACAATGT+GGG | - | chr1_1:14978410-14978429 | Msa0010020:intron | 45.0% | |
| ACCCACATTGTCATTCCTTG+GGG | + | chr1_1:14978414-14978433 | None:intergenic | 45.0% | |
| CAACCCACATTGTCATTCCT+TGG | + | chr1_1:14978416-14978435 | None:intergenic | 45.0% | |
| CAAGGAATGACAATGTGGGT+TGG | - | chr1_1:14978414-14978433 | Msa0010020:intron | 45.0% | |
| TTGACTTTCAAACAGCAGGG+TGG | - | chr1_1:14978521-14978540 | Msa0010020:intron | 45.0% | |
| CAGTCGTACTGAACTAAGCT+TGG | + | chr1_1:14978965-14978984 | None:intergenic | 45.0% | |
| GACTGCATGATGCATGATCA+AGG | - | chr1_1:14979233-14979252 | Msa0010020:intron | 45.0% | |
| TGACTGCAGCTAGATGTGTT+TGG | + | chr1_1:14979416-14979435 | None:intergenic | 45.0% | |
| TGATAGCTAGTCCCTAGAGT+TGG | - | chr1_1:14979657-14979676 | Msa0010020:intron | 45.0% | |
| TGACCAGATGACCAACTCTA+GGG | + | chr1_1:14979671-14979690 | None:intergenic | 45.0% | |
| TTCTCACTTCGTCCTCGTTT+GGG | + | chr1_1:14979694-14979713 | None:intergenic | 45.0% | |
| TTTCTCACTTCGTCCTCGTT+TGG | + | chr1_1:14979695-14979714 | None:intergenic | 45.0% | |
| TTGCAAACCAAAGGGAGTTC+TGG | - | chr1_1:14979733-14979752 | Msa0010020:intron | 45.0% | |
| AATCACACCAGAACTCCCTT+TGG | + | chr1_1:14979743-14979762 | None:intergenic | 45.0% | |
| !! | TTTGTGGGGAGGTATTTGAG+TGG | + | chr1_1:14979777-14979796 | None:intergenic | 45.0% |
| ! | TCATTAGGGATTTTGTGGGG+AGG | + | chr1_1:14979788-14979807 | None:intergenic | 45.0% |
| CCAACTGAGCTAAGATCATG+AGG | + | chr1_1:14979850-14979869 | None:intergenic | 45.0% | |
| CCTCATGATCTTAGCTCAGT+TGG | - | chr1_1:14979847-14979866 | Msa0010020:intron | 45.0% | |
| !!! | TTTTTTTTTGGTGGTGGCCG+GGG | + | chr1_1:14979913-14979932 | None:intergenic | 45.0% |
| GATAGTGAACAGCGACACAA+TGG | - | chr1_1:14979976-14979995 | Msa0010020:intron | 45.0% | |
| !! | GAGGGCATTGTATCTGCTAT+GGG | - | chr1_1:14979998-14980017 | Msa0010020:intron | 45.0% |
| ACCCAGGATTATCAACTGCA+AGG | + | chr1_1:14980056-14980075 | None:intergenic | 45.0% | |
| GATGTGGCCAAAAAAAGTCG+TGG | + | chr1_1:14980538-14980557 | None:intergenic | 45.0% | |
| TGTTCTTGCAATGAGACTGG+CGG | - | chr1_1:14980684-14980703 | Msa0010020:intron | 45.0% | |
| GCAGATGTACATGATGCTAG+CGG | - | chr1_1:14980757-14980776 | Msa0010020:intron | 45.0% | |
| !! | GAGAGTTTTGTAGCCGAGAA+AGG | - | chr1_1:14980823-14980842 | Msa0010020:intron | 45.0% |
| GATCATATGGGCGGAATAGT+AGG | - | chr1_1:14980916-14980935 | Msa0010020:intron | 45.0% | |
| ! | TCTGAAATCTGGTCTGGTGA+AGG | - | chr1_1:14981255-14981274 | Msa0010020:intron | 45.0% |
| CTGAAATCTGGTCTGGTGAA+GGG | - | chr1_1:14981256-14981275 | Msa0010020:intron | 45.0% | |
| GGGAGAATAGGCTAAAATGG+AGG | - | chr1_1:14981276-14981295 | Msa0010020:CDS | 45.0% | |
| ! | TGATAACGCGTGAGAGATGT+AGG | - | chr1_1:14981401-14981420 | Msa0010020:CDS | 45.0% |
| !! | TGTCTGTCGATTCACACTTC+TGG | - | chr1_1:14981427-14981446 | Msa0010020:CDS | 45.0% |
| TAGTTGGATAGCGTCATCTG+TGG | - | chr1_1:14981466-14981485 | Msa0010020:CDS | 45.0% | |
| ! | AAAGCACACAAGAAAGGTGC+AGG | + | chr1_1:14981498-14981517 | None:intergenic | 45.0% |
| TGTTGCTAGCGAAACGACAC+CGG | - | chr1_1:14976958-14976977 | Msa0010020:three_prime_UTR | 50.0% | |
| ACGACACCGGAGGGTAATAA+CGG | - | chr1_1:14976971-14976990 | Msa0010020:three_prime_UTR | 50.0% | |
| CCGTTACCGTTATTACCCTC+CGG | + | chr1_1:14976980-14976999 | None:intergenic | 50.0% | |
| CCGGAGGGTAATAACGGTAA+CGG | - | chr1_1:14976977-14976996 | Msa0010020:three_prime_UTR | 50.0% | |
| ACTACTGCGCTATAGCGTTG+TGG | + | chr1_1:14977619-14977638 | None:intergenic | 50.0% | |
| !! | ATGGGGGTGCCTATTTAGTG+TGG | + | chr1_1:14977985-14978004 | None:intergenic | 50.0% |
| CTAAATAGGCACCCCCATTG+TGG | - | chr1_1:14977987-14978006 | Msa0010020:intron | 50.0% | |
| CATTTGGGTGCCTATGGAGA+AGG | - | chr1_1:14978017-14978036 | Msa0010020:intron | 50.0% | |
| TTTGGGTGCCTATGGAGAAG+GGG | - | chr1_1:14978019-14978038 | Msa0010020:intron | 50.0% | |
| ! | CACAACAGAGCACCCACATT+GGG | + | chr1_1:14978260-14978279 | None:intergenic | 50.0% |
| GACCCCAAGGAATGACAATG+TGG | - | chr1_1:14978409-14978428 | Msa0010020:intron | 50.0% | |
| GGAAGTGAAGTCATCGTTGC+TGG | - | chr1_1:14979180-14979199 | Msa0010020:intron | 50.0% | |
| ! | AGTCCCTAGAGTTGGTCATC+TGG | - | chr1_1:14979665-14979684 | Msa0010020:intron | 50.0% |
| GTGACCAGATGACCAACTCT+AGG | + | chr1_1:14979672-14979691 | None:intergenic | 50.0% | |
| !! | CTCCCTTTGGTTTGCAACAG+AGG | + | chr1_1:14979730-14979749 | None:intergenic | 50.0% |
| !!! | AGATGTCGCAGCCACTTTTG+CGG | + | chr1_1:14979954-14979973 | None:intergenic | 50.0% |
| AGTGAACAGCGACACAATGG+AGG | - | chr1_1:14979979-14979998 | Msa0010020:intron | 50.0% | |
| GTGAACAGCGACACAATGGA+GGG | - | chr1_1:14979980-14979999 | Msa0010020:intron | 50.0% | |
| !! | GGAGGGCATTGTATCTGCTA+TGG | - | chr1_1:14979997-14980016 | Msa0010020:intron | 50.0% |
| AACACGCTGCTGAGTCTGAA+TGG | + | chr1_1:14980623-14980642 | None:intergenic | 50.0% | |
| TTGTAGCCGAGAAAGGGAAG+AGG | - | chr1_1:14980830-14980849 | Msa0010020:intron | 50.0% | |
| !! | CTTGGGTTGGATCATATGGG+CGG | - | chr1_1:14980907-14980926 | Msa0010020:intron | 50.0% |
| TGCTTTGCTTCAGTTGCAGC+AGG | - | chr1_1:14980969-14980988 | Msa0010020:intron | 50.0% | |
| CAAGTTACCAGAATGGGCAC+TGG | + | chr1_1:14981085-14981104 | None:intergenic | 50.0% | |
| CAGTGCCCATTCTGGTAACT+TGG | - | chr1_1:14981083-14981102 | Msa0010020:intron | 50.0% | |
| ! | AGGAGGTCTGAAATCTGGTC+TGG | - | chr1_1:14981249-14981268 | Msa0010020:intron | 50.0% |
| TGGTCTGGTGAAGGGAGAAT+AGG | - | chr1_1:14981264-14981283 | Msa0010020:CDS | 50.0% | |
| CAACCAGTGCAAACTTTCGG+CGG | + | chr1_1:14981367-14981386 | None:intergenic | 50.0% | |
| AGCACAAGCACCCACCATTG+TGG | + | chr1_1:14977948-14977967 | None:intergenic | 55.0% | |
| CCATAGCTCCCCTTCTCCAT+AGG | + | chr1_1:14978030-14978049 | None:intergenic | 55.0% | |
| CCTATGGAGAAGGGGAGCTA+TGG | - | chr1_1:14978027-14978046 | Msa0010020:intron | 55.0% | |
| ! | CCACAACAGAGCACCCACAT+TGG | + | chr1_1:14978261-14978280 | None:intergenic | 55.0% |
| CCAATGTGGGTGCTCTGTTG+TGG | - | chr1_1:14978258-14978277 | Msa0010020:intron | 55.0% | |
| TGTGGGTGCTCTGTTGTGGA+AGG | - | chr1_1:14978262-14978281 | Msa0010020:intron | 55.0% | |
| GTCATCTGGTCACCCAAACG+AGG | - | chr1_1:14979679-14979698 | Msa0010020:intron | 55.0% | |
| ATGGTCCAGGGTTCAAACCC+CGG | - | chr1_1:14979893-14979912 | Msa0010020:intron | 55.0% | |
| AGATGCTGCGATTGCACGTC+TGG | - | chr1_1:14980648-14980667 | Msa0010020:intron | 55.0% | |
| ATGAGACTGGCGGAACATCG+TGG | - | chr1_1:14980694-14980713 | Msa0010020:intron | 55.0% | |
| TCTTCGTCCAGTGCCCATTC+TGG | - | chr1_1:14981075-14981094 | Msa0010020:intron | 55.0% | |
| TTGCCGCCGAAAGTTTGCAC+TGG | - | chr1_1:14981361-14981380 | Msa0010020:CDS | 55.0% | |
| TGCTAGCGAAACGACACCGG+AGG | - | chr1_1:14976961-14976980 | Msa0010020:three_prime_UTR | 60.0% | |
| GCTAGCGAAACGACACCGGA+GGG | - | chr1_1:14976962-14976981 | Msa0010020:three_prime_UTR | 60.0% | |
| GGTGGCCGGGGTTTGAACCC+TGG | + | chr1_1:14979901-14979920 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 14976639 | 14981755 | 14976639 | ID=Msa0010020;Name=Msa0010020 |
| chr1_1 | mRNA | 14976639 | 14981755 | 14976639 | ID=Msa0010020-mRNA-1;Parent=Msa0010020;Name=Msa0010020-mRNA-1;_AED=0.00;_eAED=0.00;_QI=161|1|1|1|1|1|2|627|280 |
| chr1_1 | exon | 14976639 | 14977775 | 14976639 | ID=Msa0010020-mRNA-1:exon:5535;Parent=Msa0010020-mRNA-1 |
| chr1_1 | exon | 14981262 | 14981755 | 14981262 | ID=Msa0010020-mRNA-1:exon:5534;Parent=Msa0010020-mRNA-1 |
| chr1_1 | five_prime_UTR | 14981595 | 14981755 | 14981595 | ID=Msa0010020-mRNA-1:five_prime_utr;Parent=Msa0010020-mRNA-1 |
| chr1_1 | CDS | 14981262 | 14981594 | 14981262 | ID=Msa0010020-mRNA-1:cds;Parent=Msa0010020-mRNA-1 |
| chr1_1 | CDS | 14977266 | 14977775 | 14977266 | ID=Msa0010020-mRNA-1:cds;Parent=Msa0010020-mRNA-1 |
| chr1_1 | three_prime_UTR | 14976639 | 14977265 | 14976639 | ID=Msa0010020-mRNA-1:three_prime_utr;Parent=Msa0010020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
