AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1440600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1440600 MtrunA17_Chr1g0155721 96.581 117 4 0 2 118 3 119 3.31e-78 226
Msa1440600 MtrunA17_Chr3g0142051 80.909 110 21 0 2 111 3 112 2.17e-62 186
Msa1440600 MtrunA17_Chr5g0404831 67.593 108 35 0 4 111 7 114 7.78e-53 162
Msa1440600 MtrunA17_Chr7g0216481 50.980 102 50 0 11 112 32 133 4.85e-37 122
Msa1440600 MtrunA17_Chr8g0393201 50.000 108 54 0 4 111 226 333 6.71e-36 125
Msa1440600 MtrunA17_Chr8g0334481 40.566 106 63 0 3 108 24 129 3.11e-32 110
Msa1440600 MtrunA17_Chr7g0245141 39.286 112 68 0 3 114 22 133 6.84e-30 104
Msa1440600 MtrunA17_Chr5g0415761 44.954 109 60 0 5 113 20 128 1.20e-28 100
Msa1440600 MtrunA17_Chr5g0415771 45.283 106 58 0 7 112 21 126 7.71e-27 96.3
Msa1440600 MtrunA17_Chr2g0280411 38.261 115 71 0 4 118 8 122 1.60e-25 92.8
Msa1440600 MtrunA17_Chr5g0415741 42.202 109 63 0 5 113 18 126 3.03e-25 92.4
Msa1440600 MtrunA17_Chr2g0319291 33.929 112 74 0 4 115 9 120 4.32e-21 81.6
Msa1440600 MtrunA17_Chr4g0052481 38.298 94 56 1 8 99 62 155 1.30e-20 81.6
Msa1440600 MtrunA17_Chr4g0042051 35.294 102 66 0 4 105 9 110 1.26e-19 77.8
Msa1440600 MtrunA17_Chr1g0201781 40.789 76 44 1 25 99 76 151 3.29e-18 75.5
Msa1440600 MtrunA17_Chr3g0125821 35.780 109 65 3 8 114 70 175 4.69e-17 72.8
Msa1440600 MtrunA17_Chr6g0488561 30.172 116 76 3 5 117 75 188 7.35e-16 70.1
Msa1440600 MtrunA17_Chr7g0249461 38.095 105 61 2 5 108 79 180 1.36e-15 68.9
Msa1440600 MtrunA17_Chr3g0142031 70.732 41 12 0 61 101 5 45 1.45e-15 65.5
Msa1440600 MtrunA17_Chr7g0264661 33.721 86 55 1 26 111 44 127 1.73e-14 64.7
Msa1440600 MtrunA17_Chr2g0317731 39.474 76 45 1 25 99 84 159 4.15e-14 64.7
Msa1440600 MtrunA17_Chr3g0092051 28.319 113 76 3 4 113 86 196 1.80e-13 64.7
Msa1440600 MtrunA17_Chr8g0360031 36.364 88 54 2 25 110 87 174 3.44e-13 62.4
Msa1440600 MtrunA17_Chr1g0211871 36.842 95 48 4 26 114 85 173 5.23e-13 62.0
Msa1440600 MtrunA17_Chr4g0047431 31.132 106 69 1 5 110 3 104 1.01e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1440600 AT3G51030.1 68.519 108 34 0 4 111 5 112 1.28e-55 169
Msa1440600 AT1G45145.1 58.559 111 46 0 1 111 1 111 7.21e-48 149
Msa1440600 AT5G42980.1 58.120 117 49 0 1 117 1 117 8.29e-47 147
Msa1440600 AT1G19730.1 57.265 117 49 1 2 117 3 119 4.67e-43 137
Msa1440600 AT3G17880.2 41.667 108 63 0 4 111 262 369 3.51e-31 114
Msa1440600 AT3G17880.1 41.667 108 63 0 4 111 269 376 4.44e-31 113
Msa1440600 AT5G39950.1 42.991 107 61 0 6 112 26 132 5.17e-31 107
Msa1440600 AT3G56420.1 41.346 104 61 0 2 105 37 140 1.14e-29 104
Msa1440600 AT3G56420.2 41.346 104 61 0 2 105 37 140 1.14e-29 104
Msa1440600 AT3G56420.3 41.346 104 61 0 2 105 37 140 1.14e-29 104
Msa1440600 AT3G08710.2 38.182 110 68 0 5 114 23 132 5.98e-29 102
Msa1440600 AT3G08710.3 38.182 110 68 0 5 114 23 132 5.98e-29 102
Msa1440600 AT3G08710.1 38.182 110 68 0 5 114 23 132 5.98e-29 102
Msa1440600 AT1G59730.1 39.286 112 68 0 1 112 17 128 1.61e-28 101
Msa1440600 AT1G69880.1 37.963 108 67 0 7 114 39 146 1.02e-26 97.1
Msa1440600 AT2G40790.2 40.196 102 61 0 4 105 39 140 1.78e-25 94.0
Msa1440600 AT2G40790.1 40.196 102 61 0 4 105 39 140 1.78e-25 94.0
Msa1440600 AT1G11530.1 39.604 101 61 0 5 105 2 102 8.10e-23 86.3
Msa1440600 AT2G35010.2 37.615 109 66 1 2 108 81 189 1.31e-20 82.8
Msa1440600 AT2G35010.1 37.615 109 66 1 2 108 81 189 1.31e-20 82.8
Msa1440600 AT1G43560.1 37.778 90 50 2 25 108 74 163 2.12e-17 73.6
Msa1440600 AT1G76760.1 39.474 76 45 1 25 99 79 154 7.22e-17 72.4
Msa1440600 AT4G26160.1 32.727 110 69 3 6 112 94 201 1.49e-16 72.8
Msa1440600 AT5G16400.1 41.463 82 47 1 28 108 98 179 4.31e-16 70.9
Msa1440600 AT1G31020.1 38.372 86 51 1 15 98 59 144 9.08e-16 69.3
Msa1440600 AT3G02730.1 38.636 88 53 1 28 114 88 175 1.28e-15 69.3
Msa1440600 AT4G32580.1 31.915 94 64 0 17 110 11 104 1.41e-12 60.8
Msa1440600 AT1G03680.1 30.088 113 72 4 3 111 69 178 1.44e-12 61.2
Msa1440600 AT3G15360.1 34.940 83 52 2 30 110 107 189 1.62e-12 61.6
Msa1440600 AT3G53220.1 31.395 86 57 1 26 111 42 125 9.42e-12 58.2
Msa1440600 AT4G29670.1 26.364 110 76 3 6 112 104 211 1.24e-11 59.7
Msa1440600 AT4G29670.2 27.711 83 58 1 6 88 104 184 2.24e-11 58.9
Msa1440600 AT4G04950.1 31.915 94 64 0 17 110 11 104 2.66e-11 59.7
Msa1440600 AT4G03520.1 32.530 83 54 2 30 110 101 183 4.48e-11 57.4

Find 46 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAAAATGGTCCCTTCTTC+TGG 0.228096 tig0029094:-5664 Msa1440600:three_prime_UTR
GGCAATTATGTTGATGAAAA+TGG 0.244274 tig0029094:-5677 Msa1440600:three_prime_UTR
ATGACTTCAGGAGTCTTCTT+AGG 0.296484 tig0029094:+6392 None:intergenic
TTAGGAATCTCAGCTAGAAT+TGG 0.349137 tig0029094:+6410 None:intergenic
ATAATACATTTATCCTTTGT+CGG 0.372131 tig0029094:-5832 Msa1440600:three_prime_UTR
AGAAGGTAAGGAAGTGGATA+AGG 0.412033 tig0029094:-5953 Msa1440600:CDS
TGACATGGTCCCTTTGTTGA+TGG 0.437230 tig0029094:-5702 Msa1440600:three_prime_UTR
CTTATTCTTGAAAGAAGGTA+AGG 0.442943 tig0029094:-5965 Msa1440600:CDS
ATATATATCTGCATAATTGT+TGG 0.444889 tig0029094:+5622 Msa1440590:three_prime_UTR
ACCTTCTTATTCTTGAAAGA+AGG 0.451509 tig0029094:-5970 Msa1440600:CDS
ACCTTGAGGAAGATGACTTC+AGG 0.453976 tig0029094:+6380 None:intergenic
AAATGCAATCACCAAGCATA+AGG 0.465102 tig0029094:-5902 Msa1440600:CDS
AATAGTAATCAACCAGAAGA+AGG 0.477075 tig0029094:+5652 None:intergenic
TAAGGTAGTTGGTGCTAGGA+AGG 0.479587 tig0029094:-5935 Msa1440600:CDS
AGTCACTACTCAATTGAAGT+AGG 0.485104 tig0029094:+5766 None:intergenic
TGGATAAGGTAGTTGGTGCT+AGG 0.488936 tig0029094:-5939 Msa1440600:CDS
AAGGAAGTGGATAAGGTAGT+TGG 0.491604 tig0029094:-5946 Msa1440600:CDS
AACAGTTGCATCCTTATGCT+TGG 0.492616 tig0029094:+5891 None:intergenic
ACCTTCTTTCAAGAATAAGA+AGG 0.495256 tig0029094:+5969 None:intergenic
TTGAAAATAAATTGTTGCAT+TGG 0.497916 tig0029094:-5789 Msa1440600:three_prime_UTR
TTCAGAGTGTTGCTGAGGAA+TGG 0.506641 tig0029094:-6011 Msa1440600:intron
GGTGGATATTGATGAAGTAA+AGG 0.509236 tig0029094:-6360 Msa1440600:intron
ATGGTCCCTTTGTTGATGGT+TGG 0.517569 tig0029094:-5698 Msa1440600:three_prime_UTR
CTAGAATTGGAGCAATAAAA+CGG 0.524722 tig0029094:+6423 None:intergenic
CTTGAAAGAAGGTAAGGAAG+TGG 0.537499 tig0029094:-5959 Msa1440600:CDS
TGGTGCTAGGAAGGAAGAGC+TGG 0.539272 tig0029094:-5926 Msa1440600:CDS
TCTTTCAAGAATAAGAAGGT+TGG 0.555397 tig0029094:+5973 None:intergenic
TCCTGAAGTCATCTTCCTCA+AGG 0.561588 tig0029094:-6381 Msa1440600:CDS
CTCCTCCTTCCACTGTTCAA+CGG 0.563671 tig0029094:+7988 None:intergenic
ATAGTAATCAACCAGAAGAA+GGG 0.567472 tig0029094:+5653 None:intergenic
AATTGCCAACCATCAACAAA+GGG 0.573039 tig0029094:+5693 None:intergenic
GAAAAGATGAAAACCGACAA+AGG 0.590952 tig0029094:+5819 None:intergenic
CATTGAATAATAGATTGTGG+TGG 0.597012 tig0029094:-6474 Msa1440600:intron
GCAGCTGAAGGACAGGTGAT+CGG 0.598988 tig0029094:-8019 Msa1440600:CDS
GTGGAAGGAGGAGATCCAGA+AGG 0.606920 tig0029094:-7978 Msa1440600:CDS
TGGAAGGAGGAGATCCAGAA+GGG 0.610530 tig0029094:-7977 Msa1440600:CDS
TGCTGAGGAATGGTCTGTTG+AGG 0.618156 tig0029094:-6001 Msa1440600:CDS
CTTCATCAATATCCACCTTG+AGG 0.619089 tig0029094:+6366 None:intergenic
TCATACCGTTGAACAGTGGA+AGG 0.620633 tig0029094:-7993 Msa1440600:CDS
TAATTGCCAACCATCAACAA+AGG 0.621385 tig0029094:+5692 None:intergenic
ATTGGAGCAATAAAACGGCA+TGG 0.627618 tig0029094:+6428 None:intergenic
CCTATTTCAGAGTGTTGCTG+AGG 0.630806 tig0029094:-6016 Msa1440600:intron
TACCGTTGAACAGTGGAAGG+AGG 0.648899 tig0029094:-7990 Msa1440600:CDS
TGAAGTCATCTTCCTCAAGG+TGG 0.658466 tig0029094:-6378 Msa1440600:CDS
GTGTTCATACCGTTGAACAG+TGG 0.666984 tig0029094:-7997 Msa1440600:CDS
ATAATTTGATGTAAATGACA+TGG 0.737526 tig0029094:-5717 Msa1440600:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGTATATTTTAGTGTATTT+GGG - tig0029094:5958-5977 Msa1440600:CDS 15.0%
!!! ACAATTTTGTTTTTCATTAT+TGG + tig0029094:6293-6312 None:intergenic 15.0%
!! ATAAAATAAACTCTAAACAA+GGG - tig0029094:6754-6773 Msa1440600:intron 15.0%
!! TTAAATTAAGCATTTAATGT+AGG + tig0029094:6807-6826 None:intergenic 15.0%
!!! ATGTTTCTAATATTTTAAGA+TGG - tig0029094:7585-7604 Msa1440600:intron 15.0%
!!! CTTTTGGATCAAAATATATA+GGG + tig0029094:5858-5877 None:intergenic 20.0%
!!! ACTTTTGGATCAAAATATAT+AGG + tig0029094:5859-5878 None:intergenic 20.0%
!!! CATGTATATTTTAGTGTATT+TGG - tig0029094:5957-5976 Msa1440600:CDS 20.0%
!! GTTTGTGATGATATATTATA+TGG - tig0029094:6081-6100 Msa1440600:intron 20.0%
!! TGTTAAAAACCTAATTATAG+TGG - tig0029094:6115-6134 Msa1440600:intron 20.0%
!! CAAATTACTTATATATACTC+TGG + tig0029094:6359-6378 None:intergenic 20.0%
!! CAGAGTATATATAAGTAATT+TGG - tig0029094:6357-6376 Msa1440600:intron 20.0%
!! TTCTTCGAGTATTATATTAT+AGG + tig0029094:6645-6664 None:intergenic 20.0%
!!! CTTGTTTAGAGTTTATTTTA+TGG + tig0029094:6755-6774 None:intergenic 20.0%
!! CATAAAATAAACTCTAAACA+AGG - tig0029094:6753-6772 Msa1440600:intron 20.0%
!!! CAACAAAGAATTTATTTTGT+TGG - tig0029094:6996-7015 Msa1440600:intron 20.0%
!! ATAAAGGTGGTTATAAATTA+AGG + tig0029094:7067-7086 None:intergenic 20.0%
!! TTTCATTGAATAATAGATTG+TGG - tig0029094:7212-7231 Msa1440600:intron 20.0%
!! ATTAAACTTGAGAAAGAATA+AGG + tig0029094:7380-7399 None:intergenic 20.0%
!! ATAATACATTTATCCTTTGT+CGG - tig0029094:7857-7876 Msa1440600:intron 20.0%
!! TTGAAAATAAATTGTTGCAT+TGG - tig0029094:7900-7919 Msa1440600:intron 20.0%
!! ATAATTTGATGTAAATGACA+TGG - tig0029094:7972-7991 Msa1440600:CDS 20.0%
!! ATATATATCTGCATAATTGT+TGG + tig0029094:8070-8089 None:intergenic 20.0%
! ATTCGAAAGAAGAGAAAAAA+TGG - tig0029094:5648-5667 Msa1440600:three_prime_UTR 25.0%
!!! TTTGATGAATACCAGTTTTT+TGG + tig0029094:5746-5765 None:intergenic 25.0%
!! GAACAATTCATAAACACTTT+TGG + tig0029094:5874-5893 None:intergenic 25.0%
!!! TATTTTGACCATACTTTAGT+AGG + tig0029094:6144-6163 None:intergenic 25.0%
! ATGATTATGACATTCATATG+TGG + tig0029094:6703-6722 None:intergenic 25.0%
!! TATTTTATGGCACAAGTATT+TGG + tig0029094:6742-6761 None:intergenic 25.0%
! AAAAAAACTAACCTAGAGAA+TGG + tig0029094:6782-6801 None:intergenic 25.0%
!!! TTGCCATTTTTATATATGCA+TGG - tig0029094:6868-6887 Msa1440600:intron 25.0%
! AGGCTAATAATAACATTGAA+AGG + tig0029094:6922-6941 None:intergenic 25.0%
! AAATTACTAAGTTAGTGTCA+CGG + tig0029094:6951-6970 None:intergenic 25.0%
! CAAAACAAATAAGCACATAA+AGG + tig0029094:7083-7102 None:intergenic 25.0%
!! CTTTATGTGCTTATTTGTTT+TGG - tig0029094:7081-7100 Msa1440600:intron 25.0%
! TAATTAGGTTTTTAACACCG+TGG + tig0029094:6112-6131 None:intergenic 30.0%
AGTAGGAAACCACTATAATT+AGG + tig0029094:6127-6146 None:intergenic 30.0%
TAATTTAACCGTCAAACCTA+TGG - tig0029094:6162-6181 Msa1440600:intron 30.0%
!! CACAGTTGGCAAATTTTAAT+TGG + tig0029094:6577-6596 None:intergenic 30.0%
!!! AGAATTTTTCAAGACACAGT+TGG + tig0029094:6591-6610 None:intergenic 30.0%
GGACCATGCATATATAAAAA+TGG + tig0029094:6874-6893 None:intergenic 30.0%
! TTTTTATATATGCATGGTCC+AGG - tig0029094:6874-6893 Msa1440600:intron 30.0%
AACAAATAAGCACATAAAGG+TGG + tig0029094:7080-7099 None:intergenic 30.0%
CATTGAATAATAGATTGTGG+TGG - tig0029094:7215-7234 Msa1440600:intron 30.0%
CTAGAATTGGAGCAATAAAA+CGG + tig0029094:7269-7288 None:intergenic 30.0%
! TGTAGTTTTTGTCAAAATCG+TGG - tig0029094:7460-7479 Msa1440600:intron 30.0%
GATCATAAGATGACATAACA+TGG + tig0029094:7540-7559 None:intergenic 30.0%
TCTTTCAAGAATAAGAAGGT+TGG + tig0029094:7719-7738 None:intergenic 30.0%
ACCTTCTTATTCTTGAAAGA+AGG - tig0029094:7719-7738 Msa1440600:intron 30.0%
ACCTTCTTTCAAGAATAAGA+AGG + tig0029094:7723-7742 None:intergenic 30.0%
CTTATTCTTGAAAGAAGGTA+AGG - tig0029094:7724-7743 Msa1440600:intron 30.0%
! GGCAATTATGTTGATGAAAA+TGG - tig0029094:8012-8031 Msa1440600:CDS 30.0%
ATAGTAATCAACCAGAAGAA+GGG + tig0029094:8039-8058 None:intergenic 30.0%
AATAGTAATCAACCAGAAGA+AGG + tig0029094:8040-8059 None:intergenic 30.0%
!! AGAGGAGATTAGTCTCATAA+CGG - tig0029094:6046-6065 Msa1440600:intron 35.0%
!! GATTAGTCTCATAACGGATT+TGG - tig0029094:6052-6071 Msa1440600:intron 35.0%
TATATTATATGGAGCCACCA+CGG - tig0029094:6092-6111 Msa1440600:intron 35.0%
AGTGGTTTCCTACTAAAGTA+TGG - tig0029094:6133-6152 Msa1440600:intron 35.0%
GCACTATTTGCCATAATTCA+AGG - tig0029094:6512-6531 Msa1440600:intron 35.0%
CTATTTGCCATAATTCAAGG+AGG - tig0029094:6515-6534 Msa1440600:intron 35.0%
TTAGGAATCTCAGCTAGAAT+TGG + tig0029094:7282-7301 None:intergenic 35.0%
GGTGGATATTGATGAAGTAA+AGG - tig0029094:7329-7348 Msa1440600:intron 35.0%
!! AACTAGTCTTAAAGCCGATT+CGG - tig0029094:7650-7669 Msa1440600:intron 35.0%
AAATGCAATCACCAAGCATA+AGG - tig0029094:7787-7806 Msa1440600:intron 35.0%
GAAAAGATGAAAACCGACAA+AGG + tig0029094:7873-7892 None:intergenic 35.0%
AGTCACTACTCAATTGAAGT+AGG + tig0029094:7926-7945 None:intergenic 35.0%
AATTGCCAACCATCAACAAA+GGG + tig0029094:7999-8018 None:intergenic 35.0%
TAATTGCCAACCATCAACAA+AGG + tig0029094:8000-8019 None:intergenic 35.0%
AGAGAAAAAATGGCAGCTGA+AGG - tig0029094:5658-5677 Msa1440600:three_prime_UTR 40.0%
!!! TTTTGGAGTCATTTCCCTTC+TGG + tig0029094:5729-5748 None:intergenic 40.0%
GGGAAATGACTCCAAAAAAC+TGG - tig0029094:5732-5751 Msa1440600:three_prime_UTR 40.0%
AATATTGCCCTAGATCATCG+TGG - tig0029094:5910-5929 Msa1440600:CDS 40.0%
TTAGACCGCAACTTAAAGCT+CGG + tig0029094:6005-6024 None:intergenic 40.0%
! TTAGGTTTTTAACACCGTGG+TGG + tig0029094:6109-6128 None:intergenic 40.0%
GGCAAATAGTGCATTGTGAT+TGG + tig0029094:6504-6523 None:intergenic 40.0%
TGTGGCTGAAAAATAGGAAG+TGG - tig0029094:6538-6557 Msa1440600:intron 40.0%
!! AAACAAGGGTACCATTCTCT+AGG - tig0029094:6768-6787 Msa1440600:intron 40.0%
!! AGTTAGTGTCACGGTTTTAG+AGG + tig0029094:6942-6961 None:intergenic 40.0%
!!! TGGTGGATTTTACTGCTTCA+TGG - tig0029094:7232-7251 Msa1440600:intron 40.0%
! GATTTTACTGCTTCATGGTG+TGG - tig0029094:7237-7256 Msa1440600:intron 40.0%
ATTGGAGCAATAAAACGGCA+TGG + tig0029094:7264-7283 None:intergenic 40.0%
ATGACTTCAGGAGTCTTCTT+AGG + tig0029094:7300-7319 None:intergenic 40.0%
CTTCATCAATATCCACCTTG+AGG + tig0029094:7326-7345 None:intergenic 40.0%
CTTGAAAGAAGGTAAGGAAG+TGG - tig0029094:7730-7749 Msa1440600:intron 40.0%
AGAAGGTAAGGAAGTGGATA+AGG - tig0029094:7736-7755 Msa1440600:intron 40.0%
AAGGAAGTGGATAAGGTAGT+TGG - tig0029094:7743-7762 Msa1440600:intron 40.0%
AACAGTTGCATCCTTATGCT+TGG + tig0029094:7801-7820 None:intergenic 40.0%
ATGAAAATGGTCCCTTCTTC+TGG - tig0029094:8025-8044 Msa1440600:CDS 40.0%
AAAAATGGCAGCTGAAGGAC+AGG - tig0029094:5663-5682 Msa1440600:three_prime_UTR 45.0%
GTGTTCATACCGTTGAACAG+TGG - tig0029094:5692-5711 Msa1440600:three_prime_UTR 45.0%
TCATACCGTTGAACAGTGGA+AGG - tig0029094:5696-5715 Msa1440600:three_prime_UTR 45.0%
ACACTGTCCACGATGATCTA+GGG + tig0029094:5920-5939 None:intergenic 45.0%
AACACTGTCCACGATGATCT+AGG + tig0029094:5921-5940 None:intergenic 45.0%
!! ATCACCCGAGCTTTAAGTTG+CGG - tig0029094:5997-6016 Msa1440600:CDS 45.0%
TAGACCGCAACTTAAAGCTC+GGG + tig0029094:6004-6023 None:intergenic 45.0%
TAATCTCCTCTCGTGTGCTT+AGG + tig0029094:6037-6056 None:intergenic 45.0%
CTTGTGCACCATAGGTTTGA+CGG + tig0029094:6173-6192 None:intergenic 45.0%
TTGTCTCACTTGTGCACCAT+AGG + tig0029094:6181-6200 None:intergenic 45.0%
TGCCATAATTCAAGGAGGTG+TGG - tig0029094:6520-6539 Msa1440600:intron 45.0%
AGCCACACCTCCTTGAATTA+TGG + tig0029094:6525-6544 None:intergenic 45.0%
! AGGAGGTGTGGCTGAAAAAT+AGG - tig0029094:6532-6551 Msa1440600:intron 45.0%
TAACGCAAGTTCGTTCATCC+TGG + tig0029094:6895-6914 None:intergenic 45.0%
TCCTGAAGTCATCTTCCTCA+AGG - tig0029094:7308-7327 Msa1440600:intron 45.0%
ACCTTGAGGAAGATGACTTC+AGG + tig0029094:7312-7331 None:intergenic 45.0%
TGAAGTCATCTTCCTCAAGG+TGG - tig0029094:7311-7330 Msa1440600:intron 45.0%
!! CACTCTGAAATAGGCCGAAT+CGG + tig0029094:7667-7686 None:intergenic 45.0%
!! CCTCAGCAACACTCTGAAAT+AGG + tig0029094:7676-7695 None:intergenic 45.0%
!! CCTATTTCAGAGTGTTGCTG+AGG - tig0029094:7673-7692 Msa1440600:intron 45.0%
!! TTCAGAGTGTTGCTGAGGAA+TGG - tig0029094:7678-7697 Msa1440600:intron 45.0%
! TGGATAAGGTAGTTGGTGCT+AGG - tig0029094:7750-7769 Msa1440600:intron 45.0%
!! TAAGGTAGTTGGTGCTAGGA+AGG - tig0029094:7754-7773 Msa1440600:intron 45.0%
TGACATGGTCCCTTTGTTGA+TGG - tig0029094:7987-8006 Msa1440600:CDS 45.0%
!! ATGGTCCCTTTGTTGATGGT+TGG - tig0029094:7991-8010 Msa1440600:CDS 45.0%
TACCGTTGAACAGTGGAAGG+AGG - tig0029094:5699-5718 Msa1440600:three_prime_UTR 50.0%
CTCCTCCTTCCACTGTTCAA+CGG + tig0029094:5704-5723 None:intergenic 50.0%
TGGAAGGAGGAGATCCAGAA+GGG - tig0029094:5712-5731 Msa1440600:three_prime_UTR 50.0%
TCCTCTCGTGTGCTTAGGTT+CGG + tig0029094:6032-6051 None:intergenic 50.0%
TGCTGAGGAATGGTCTGTTG+AGG - tig0029094:7688-7707 Msa1440600:intron 50.0%
GCAGCTGAAGGACAGGTGAT+CGG - tig0029094:5670-5689 Msa1440600:three_prime_UTR 55.0%
GTGGAAGGAGGAGATCCAGA+AGG - tig0029094:5711-5730 Msa1440600:three_prime_UTR 55.0%
TCCGAACCTAAGCACACGAG+AGG - tig0029094:6028-6047 Msa1440600:intron 55.0%
! TGGTGCTAGGAAGGAAGAGC+TGG - tig0029094:7763-7782 Msa1440600:intron 55.0%
Chromosome Type Strat End Strand Name
tig0029094 gene 5603 8108 5603 ID=Msa1440600;Name=Msa1440600
tig0029094 mRNA 5603 8108 5603 ID=Msa1440600-mRNA-1;Parent=Msa1440600;Name=Msa1440600-mRNA-1;_AED=0.03;_eAED=0.03;_QI=64|1|1|1|1|1|3|276|119
tig0029094 exon 5603 6028 5603 ID=Msa1440600-mRNA-1:exon:12332;Parent=Msa1440600-mRNA-1
tig0029094 exon 6361 6483 6361 ID=Msa1440600-mRNA-1:exon:12331;Parent=Msa1440600-mRNA-1
tig0029094 exon 7958 8108 7958 ID=Msa1440600-mRNA-1:exon:12330;Parent=Msa1440600-mRNA-1
tig0029094 five_prime_UTR 8045 8108 8045 ID=Msa1440600-mRNA-1:five_prime_utr;Parent=Msa1440600-mRNA-1
tig0029094 CDS 7958 8044 7958 ID=Msa1440600-mRNA-1:cds;Parent=Msa1440600-mRNA-1
tig0029094 CDS 6361 6483 6361 ID=Msa1440600-mRNA-1:cds;Parent=Msa1440600-mRNA-1
tig0029094 CDS 5879 6028 5879 ID=Msa1440600-mRNA-1:cds;Parent=Msa1440600-mRNA-1
tig0029094 three_prime_UTR 5603 5878 5603 ID=Msa1440600-mRNA-1:three_prime_utr;Parent=Msa1440600-mRNA-1
Gene Sequence

>Msa1440600

ATGGCAGCTGAAGGACAGGTGATCGGTGTTCATACCGTTGAACAGTGGAAGGAGGAGATCCAGAAGGGAAATGACTCCAAAAAACTGATTGTGGTGGATTTTACTGCTTCATGGTGTGGTCCATGCCGTTTTATTGCTCCAATTCTAGCTGAGATTCCTAAGAAGACTCCTGAAGTCATCTTCCTCAAGGTGGATATTGATGAAGTAAAGAGTGTTGCTGAGGAATGGTCTGTTGAGGCTATGCCAACCTTCTTATTCTTGAAAGAAGGTAAGGAAGTGGATAAGGTAGTTGGTGCTAGGAAGGAAGAGCTGGAAAATGCAATCACCAAGCATAAGGATGCAACTGTTGCTACTACTTGA

Protein sequence

>Msa1440600

MAAEGQVIGVHTVEQWKEEIQKGNDSKKLIVVDFTASWCGPCRFIAPILAEIPKKTPEVIFLKVDIDEVKSVAEEWSVEAMPTFLFLKEGKEVDKVVGARKEELENAITKHKDATVATT*