AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0960160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0960160 MtrunA17_Chr6g0485111 59.409 372 59 9 1 288 1 364 1.64e-132 382
Msa0960160 MtrunA17_Chr8g0390691 40.000 375 122 10 1 288 1 359 1.48e-63 205
Msa0960160 MtrunA17_Chr1g0169271 36.765 136 60 3 28 139 43 176 4.48e-19 86.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0960160 AT3G24460.2 38.753 369 133 10 6 288 8 369 6.25e-65 209
Msa0960160 AT3G24460.1 38.753 369 133 10 6 288 8 369 6.25e-65 209
Msa0960160 AT4G13345.3 55.479 146 40 2 17 139 14 157 2.20e-37 135
Msa0960160 AT4G13345.7 55.479 146 40 2 17 139 14 157 2.20e-37 135
Msa0960160 AT4G13345.5 55.479 146 40 2 17 139 14 157 5.76e-37 135
Msa0960160 AT4G13345.5 45.918 98 28 2 211 284 258 354 2.43e-19 87.4
Msa0960160 AT4G13345.4 55.479 146 40 2 17 139 14 157 1.69e-36 135
Msa0960160 AT4G13345.4 46.078 102 30 2 211 288 258 358 4.36e-20 89.7
Msa0960160 AT4G13345.1 55.479 146 40 2 17 139 14 157 1.88e-36 134
Msa0960160 AT4G13345.1 46.078 102 30 2 211 288 258 358 4.53e-20 89.7
Msa0960160 AT4G13345.2 55.479 146 40 2 17 139 14 157 2.02e-36 134
Msa0960160 AT4G13345.2 45.098 102 31 2 211 288 258 358 1.14e-19 88.6
Msa0960160 AT4G13345.6 55.479 146 40 2 17 139 14 157 2.02e-36 134
Msa0960160 AT4G13345.6 45.098 102 31 2 211 288 258 358 1.14e-19 88.6
Msa0960160 AT2G33205.6 33.333 144 70 3 27 146 40 181 6.47e-15 74.7
Msa0960160 AT2G33205.6 65.854 41 14 0 241 281 330 370 3.19e-12 66.6
Msa0960160 AT2G33205.3 33.333 144 70 3 27 146 40 181 6.76e-15 74.3
Msa0960160 AT2G33205.4 33.333 144 70 3 27 146 40 181 6.76e-15 74.3
Msa0960160 AT2G33205.1 33.333 144 70 3 27 146 40 181 1.11e-14 74.3
Msa0960160 AT2G33205.1 54.237 59 26 1 230 288 318 375 8.68e-13 68.6
Msa0960160 AT2G33205.8 33.333 144 70 3 27 146 40 181 1.12e-14 74.3
Msa0960160 AT2G33205.8 58.333 48 20 0 241 288 330 377 1.62e-12 67.8
Msa0960160 AT2G33205.5 33.333 144 70 3 27 146 40 181 1.12e-14 74.3
Msa0960160 AT2G33205.5 58.333 48 20 0 241 288 330 377 1.62e-12 67.8
Msa0960160 AT2G33205.9 33.333 144 70 3 27 146 40 181 1.15e-14 74.3
Msa0960160 AT2G33205.9 37.143 105 59 2 184 288 280 377 1.37e-12 68.2
Msa0960160 AT2G33205.2 37.143 105 59 2 184 288 185 282 6.53e-13 68.6
Msa0960160 AT2G33205.7 37.143 105 59 2 184 288 170 267 6.87e-13 68.6

Find 83 sgRNAs with CRISPR-Local

Find 395 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGGGGAAGTTGCACATTT+TGG 0.202942 6_3:-79193346 Msa0960160:intron
ACTATCTGATAGATCAAAAT+TGG 0.241729 6_3:+79189416 None:intergenic
CTGATGCATTGATCTCCTTC+TGG 0.269494 6_3:+79191740 None:intergenic
TTATGCTTACTAGTTGAATT+AGG 0.274629 6_3:+79193217 None:intergenic
AGCAATTTAGTCTATGATAT+TGG 0.274697 6_3:-79196851 Msa0960160:five_prime_UTR
TTTCTCTTGTTTCTCTCAAT+TGG 0.293298 6_3:-79196912 Msa0960160:five_prime_UTR
GAGATACACTTGTCATGATT+TGG 0.294464 6_3:+79192632 None:intergenic
TCTGAATTGATTGATCTCTA+TGG 0.300155 6_3:-79193628 Msa0960160:intron
CCTTGAAAGGGACAACAATA+TGG 0.307837 6_3:-79197137 None:intergenic
CCAAGAGATACATGGCATTC+TGG 0.323171 6_3:-79193712 Msa0960160:intron
AGGATATATGAACATGTAAA+TGG 0.325827 6_3:+79189276 None:intergenic
CAAATACCATCACATGGATT+TGG 0.338082 6_3:+79192770 None:intergenic
GATGATGTTCCATATGGATA+TGG 0.339974 6_3:-79190789 Msa0960160:CDS
CAAAGTTGGAAAAGACTGTT+TGG 0.346464 6_3:-79194107 Msa0960160:CDS
CCTTTAGTCCACAACCTTGT+TGG 0.356113 6_3:+79194459 None:intergenic
TATTTCTGTGTACCATCCTT+TGG 0.358026 6_3:+79189303 None:intergenic
TTGATGGCAAGATATGTCTA+TGG 0.370296 6_3:-79194395 Msa0960160:CDS
TACTTTGCAATGCTATTGAT+TGG 0.370812 6_3:-79190732 Msa0960160:CDS
ATGAAGCATATAAGCTTATA+CGG 0.380266 6_3:-79197094 Msa0960160:five_prime_UTR
AAATGCATCAAATCCTTTGA+TGG 0.383037 6_3:-79194411 Msa0960160:CDS
TTAATGTTGTTGCTTTCTCT+TGG 0.384289 6_3:+79194488 None:intergenic
GGGCAACCAAGATTGTTCTA+TGG 0.386886 6_3:-79193684 Msa0960160:CDS
CGTTACTTACAATCATTAGA+TGG 0.393097 6_3:-79189249 Msa0960160:three_prime_UTR
TGGGTTCTTGTAGAAGTCTA+TGG 0.393716 6_3:-79189175 Msa0960160:three_prime_UTR
ATTTATCAGTTCAATGCATT+GGG 0.400158 6_3:-79189194 Msa0960160:three_prime_UTR
TGTCTTGCCTTCCATACAAT+TGG 0.400690 6_3:+79189502 None:intergenic
AATTTATCAGTTCAATGCAT+TGG 0.413494 6_3:-79189195 Msa0960160:three_prime_UTR
GTGGACTAAAGGATTCTTCA+TGG 0.420163 6_3:-79194448 Msa0960160:CDS
CATGTGATGGTATTTGCAAC+AGG 0.432557 6_3:-79192763 Msa0960160:CDS
GGAACATCATCTTCTTCTGC+TGG 0.439187 6_3:+79190801 None:intergenic
TATAATCCATAGAACAATCT+TGG 0.444057 6_3:+79193678 None:intergenic
TGAATAGTGTGTAACATTAG+TGG 0.445733 6_3:-79194526 Msa0960160:five_prime_UTR
TTTACATGTTCATATATCCT+TGG 0.449738 6_3:-79189273 Msa0960160:three_prime_UTR
ACATATAGCCCCATCAATCC+TGG 0.458090 6_3:+79192458 None:intergenic
CTAATTTCAACAATAAGAAT+AGG 0.458367 6_3:+79189137 None:intergenic
TAGCTGCTAATATGTTGGCA+TGG 0.464913 6_3:-79194361 Msa0960160:CDS
GAAGAAGATGATGTTCCATA+TGG 0.466677 6_3:-79190795 Msa0960160:CDS
TGCTGATAGCTCCAATTGTA+TGG 0.471218 6_3:-79189513 Msa0960160:CDS
CCAACAAGGTTGTGGACTAA+AGG 0.475753 6_3:-79194459 Msa0960160:CDS
GATCAATGCATCAGAACATC+AGG 0.477126 6_3:-79191731 Msa0960160:CDS
TTGCAATGCTATTGATTGGA+TGG 0.487844 6_3:-79190728 Msa0960160:CDS
AGAATAGAAGATCTTCTTAG+TGG 0.490986 6_3:-79194594 Msa0960160:five_prime_UTR
CTATTCAAGTATATGATCAA+TGG 0.495256 6_3:+79194542 None:intergenic
ATTATGCTCGTACTATGTAA+TGG 0.495790 6_3:-79189445 Msa0960160:three_prime_UTR
CATTAATTTGCAGCTAAGGA+AGG 0.506153 6_3:-79190832 Msa0960160:intron
CATTTGTGCTAGAATCCAAT+TGG 0.512599 6_3:+79189376 None:intergenic
TCTGTGTACCATCCTTTGGA+TGG 0.517292 6_3:+79189307 None:intergenic
AGTGAAGAAATTAAAAGAGA+AGG 0.524149 6_3:+79197020 None:intergenic
TTGAGGAGGCATGATGGTAT+TGG 0.529147 6_3:+79192688 None:intergenic
TGCTTACTAGTTGAATTAGG+AGG 0.533605 6_3:+79193220 None:intergenic
AAAGTTGGAAAAGACTGTTT+GGG 0.535404 6_3:-79194106 Msa0960160:CDS
TAGTGCATTGACTGAACTCA+AGG 0.537938 6_3:-79194312 Msa0960160:CDS
AATAGTAACCAACAAGGTTG+TGG 0.539024 6_3:-79194467 Msa0960160:CDS
TAGAGATCAATCAATTCAGA+AGG 0.539665 6_3:+79193631 None:intergenic
AGCTGCTAATATGTTGGCAT+GGG 0.541683 6_3:-79194360 Msa0960160:CDS
ATTAATTTGCAGCTAAGGAA+GGG 0.543167 6_3:-79190831 Msa0960160:intron
TACATGGCATTCTGGATGGT+GGG 0.553354 6_3:-79193704 Msa0960160:CDS
AGAAATTAAAAGAGAAGGAG+TGG 0.558708 6_3:+79197025 None:intergenic
TAGACATATCTTGCCATCAA+AGG 0.559648 6_3:+79194398 None:intergenic
GATAGCTCCAATTGTATGGA+AGG 0.571406 6_3:-79189509 Msa0960160:CDS
GAGATACATGGCATTCTGGA+TGG 0.589052 6_3:-79193708 Msa0960160:CDS
CTCTCATTCCATCCAAAGGA+TGG 0.589491 6_3:-79189315 Msa0960160:three_prime_UTR
TTGTGTCAATAGGTAAATGG+TGG 0.592494 6_3:-79192491 Msa0960160:intron
CATCCTTTGGATGGAATGAG+AGG 0.592659 6_3:+79189316 None:intergenic
AATATGTTGAGGAGGCATGA+TGG 0.594347 6_3:+79192682 None:intergenic
CTGTTGCAAATACCATCACA+TGG 0.597757 6_3:+79192764 None:intergenic
AGAAGATCTTCTTAGTGGAG+TGG 0.604451 6_3:-79194589 Msa0960160:five_prime_UTR
TACATAGTACGAGCATAATG+AGG 0.608914 6_3:+79189449 None:intergenic
AATTAAAAGAGAAGGAGTGG+TGG 0.612518 6_3:+79197028 None:intergenic
ACTCCTCTCATTCCATCCAA+AGG 0.616042 6_3:-79189319 Msa0960160:three_prime_UTR
ATACATGGCATTCTGGATGG+TGG 0.619650 6_3:-79193705 Msa0960160:CDS
TGAATGAACCAAGAGATACA+TGG 0.628217 6_3:-79193720 Msa0960160:intron
ATGATTGTAAGTAACGTCCA+AGG 0.630967 6_3:+79189256 None:intergenic
GTGCAGCCAAATCCATGTGA+TGG 0.636534 6_3:-79192776 Msa0960160:intron
TGCAAAGTACATAGCTCCTG+TGG 0.637719 6_3:+79190746 None:intergenic
GCACTGTAACCAAAACAGAC+TGG 0.637874 6_3:-79191709 Msa0960160:CDS
AGTGCATTGACTGAACTCAA+GGG 0.641155 6_3:-79194311 Msa0960160:intron
TGTGCATGCAGTGAACCAGA+AGG 0.646240 6_3:-79191755 Msa0960160:intron
AAAGGGACAACAATATGGAG+AGG 0.654825 6_3:-79197132 None:intergenic
AGAGATCAATCAATTCAGAA+GGG 0.664107 6_3:+79193632 None:intergenic
AAAGACTGTTTGGGAGCACA+TGG 0.665233 6_3:-79194097 Msa0960160:CDS
TATTGGATTAACATATACAA+AGG 0.674358 6_3:-79196834 Msa0960160:intron
AACATTAATAGTAACCAACA+AGG 0.715322 6_3:-79194473 Msa0960160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAACAAAACAAAATT+TGG - chr6_3:79189917-79189936 Msa0960160:intron 10.0%
!!! TTTTTCAATAAAAAATGAAA+AGG + chr6_3:79190350-79190369 None:intergenic 10.0%
!!! CTTCTTTTTAAATTAAATTA+TGG - chr6_3:79190644-79190663 Msa0960160:intron 10.0%
!!! TCTCTTTAAAAAATATTTAA+TGG + chr6_3:79190699-79190718 None:intergenic 10.0%
!! ATTGTAAAAAAAAGATATTT+AGG + chr6_3:79190810-79190829 None:intergenic 10.0%
!!! TTATTTATTTATTTTGTGAA+AGG - chr6_3:79191504-79191523 Msa0960160:intron 10.0%
!!! ATTGAAATTTTATTTGATAA+AGG + chr6_3:79192213-79192232 None:intergenic 10.0%
!! ATCAAATAAAATTTCAATTA+TGG - chr6_3:79192215-79192234 Msa0960160:intron 10.0%
!! TCAAATAAAATTTCAATTAT+GGG - chr6_3:79192216-79192235 Msa0960160:intron 10.0%
!!! CTCTATTATATATTTAAAAT+AGG - chr6_3:79192819-79192838 Msa0960160:intron 10.0%
!!! AATTATTATCTATATTTTTC+AGG - chr6_3:79193004-79193023 Msa0960160:intron 10.0%
!!! ATTATTATCTATATTTTTCA+GGG - chr6_3:79193005-79193024 Msa0960160:intron 10.0%
!! AAATTTAAAAATGCAAAAAA+AGG + chr6_3:79193859-79193878 None:intergenic 10.0%
!! ATATTCAATAGAAATAAAAA+GGG + chr6_3:79194460-79194479 None:intergenic 10.0%
!! TATATTCAATAGAAATAAAA+AGG + chr6_3:79194461-79194480 None:intergenic 10.0%
!!! GTATGAATTTTTTATTTTAT+TGG + chr6_3:79194892-79194911 None:intergenic 10.0%
!! ATAAAATATGTGTTTATGAA+AGG + chr6_3:79189488-79189507 None:intergenic 15.0%
!!! TTTTATCAATCTTTTATTGA+TGG - chr6_3:79190251-79190270 Msa0960160:intron 15.0%
!!! CTTTTTTAATTTTCAATTGT+TGG + chr6_3:79190451-79190470 None:intergenic 15.0%
!!! TATTTTTTATGATGATGTTT+TGG - chr6_3:79192487-79192506 Msa0960160:intron 15.0%
!!! TGACATAATTACTTTTTTTT+GGG - chr6_3:79192884-79192903 Msa0960160:intron 15.0%
!!! TAAGAGTATTTTTATAAGAA+AGG + chr6_3:79193187-79193206 None:intergenic 15.0%
!!! TAAATAAAACACATACTTTT+GGG + chr6_3:79193650-79193669 None:intergenic 15.0%
!!! TTAAATAAAACACATACTTT+TGG + chr6_3:79193651-79193670 None:intergenic 15.0%
!!! AAAATTGGTTTTGATTAAAT+TGG - chr6_3:79193935-79193954 Msa0960160:intron 15.0%
!!! TTTTCATATTAAAAATGTCT+CGG - chr6_3:79194276-79194295 Msa0960160:intron 15.0%
!!! TTATGTTTGTTTATGTATTT+TGG - chr6_3:79194646-79194665 Msa0960160:intron 15.0%
!!! CAATATTAAAATCAAACTTT+TGG - chr6_3:79195353-79195372 Msa0960160:intron 15.0%
!!! GTTTTTTTTTTTCCTTTTTT+CGG - chr6_3:79196016-79196035 Msa0960160:intron 15.0%
!!! TTCATTTTTTAAACTACTAT+TGG - chr6_3:79196330-79196349 Msa0960160:intron 15.0%
!! TATTGGATTAACATATACAA+AGG - chr6_3:79189418-79189437 Msa0960160:three_prime_UTR 20.0%
!! TAAACATATGAAAAAACATG+AGG + chr6_3:79189582-79189601 None:intergenic 20.0%
!! AAAATGAGAGAAAATGTTTA+AGG + chr6_3:79189614-79189633 None:intergenic 20.0%
!!! TATGTCATTTTGTTTTTGAA+TGG - chr6_3:79189743-79189762 Msa0960160:intron 20.0%
!! AAGATTAATGACATAAAAAC+AGG + chr6_3:79189769-79189788 None:intergenic 20.0%
!!! GTTTTTATGTCATTAATCTT+TGG - chr6_3:79189769-79189788 Msa0960160:intron 20.0%
!! CAAACTAATAATTCAAAGAA+TGG + chr6_3:79189845-79189864 None:intergenic 20.0%
!!! TTACTTTACTTTATTTTCCA+GGG + chr6_3:79190321-79190340 None:intergenic 20.0%
!!! ATTACTTTACTTTATTTTCC+AGG + chr6_3:79190322-79190341 None:intergenic 20.0%
!!! TTTTAATTTTCAATTGTTGG+AGG + chr6_3:79190448-79190467 None:intergenic 20.0%
!!! GTTTTTTCTTTCTTATTTTG+AGG - chr6_3:79190543-79190562 Msa0960160:intron 20.0%
!!! TTTAAAGACAAATTTTGTTG+AGG - chr6_3:79190776-79190795 Msa0960160:CDS 20.0%
!!! GTTTTAGAAATTTTTTTGAG+AGG - chr6_3:79190918-79190937 Msa0960160:intron 20.0%
!!! TGTTCTATGGAATTTTATTT+TGG - chr6_3:79191111-79191130 Msa0960160:intron 20.0%
!!! GTTCTATGGAATTTTATTTT+GGG - chr6_3:79191112-79191131 Msa0960160:intron 20.0%
!!! TTCTATGGAATTTTATTTTG+GGG - chr6_3:79191113-79191132 Msa0960160:intron 20.0%
!! AAGAAGAAAAAAATCTATGA+TGG - chr6_3:79191282-79191301 Msa0960160:intron 20.0%
!! AGAAGAAAAAAATCTATGAT+GGG - chr6_3:79191283-79191302 Msa0960160:intron 20.0%
!! ATAAATAAACAACTACTAGA+TGG + chr6_3:79191492-79191511 None:intergenic 20.0%
!!! TTTATTTTGTGAAAGGAAAA+AGG - chr6_3:79191511-79191530 Msa0960160:intron 20.0%
!!! TAACGAATTTTCCATAAAAT+TGG - chr6_3:79191594-79191613 Msa0960160:intron 20.0%
!! AATTTATCAATTGACTATAG+AGG + chr6_3:79192036-79192055 None:intergenic 20.0%
!! TCTAACAAATATTGAATTAC+AGG - chr6_3:79192110-79192129 Msa0960160:intron 20.0%
!!! CATATATATAGTCTAGTTTA+TGG - chr6_3:79192239-79192258 Msa0960160:intron 20.0%
!!! ATATGATATAGTCTAGTTTA+TGG - chr6_3:79192273-79192292 Msa0960160:intron 20.0%
!! AAATAGCTAATCAAGAATTA+AGG + chr6_3:79192472-79192491 None:intergenic 20.0%
!! CAAACATAGAGATTAATAAT+TGG + chr6_3:79192668-79192687 None:intergenic 20.0%
!!! TTCAATTGCTTTAAAATTGT+CGG + chr6_3:79192745-79192764 None:intergenic 20.0%
!! AAAAAAAGTAATTATGTCAG+AGG + chr6_3:79192883-79192902 None:intergenic 20.0%
!!! CTGACATAATTACTTTTTTT+TGG - chr6_3:79192883-79192902 Msa0960160:intron 20.0%
!!! ATTTTTATCGATTTGTGTTA+GGG - chr6_3:79194003-79194022 Msa0960160:intron 20.0%
!!! TTTTAGTAGAATTGACTTTA+GGG - chr6_3:79194056-79194075 Msa0960160:intron 20.0%
!! ACTTTCGAAAATCAAATTTA+AGG + chr6_3:79194145-79194164 None:intergenic 20.0%
!! TTTCATATTAAAAATGTCTC+GGG - chr6_3:79194277-79194296 Msa0960160:intron 20.0%
!!! ACATATTTTTCTAACTAGTT+TGG - chr6_3:79194686-79194705 Msa0960160:intron 20.0%
!! TCATTGGAAACATATTTATT+GGG + chr6_3:79195696-79195715 None:intergenic 20.0%
!! TTCATTGGAAACATATTTAT+TGG + chr6_3:79195697-79195716 None:intergenic 20.0%
!!! AAGAACAGCTATAAATTTTT+TGG - chr6_3:79195899-79195918 Msa0960160:intron 20.0%
!!! CAATGTTCATAGATTTTTTT+TGG - chr6_3:79196362-79196381 Msa0960160:intron 20.0%
!!! AGGTTTTCACTAAAAAAAAA+TGG + chr6_3:79196656-79196675 None:intergenic 20.0%
!!! TTCTTATCATTTTTACAGTA+TGG - chr6_3:79196715-79196734 Msa0960160:intron 20.0%
!! CTAATTTCAACAATAAGAAT+AGG + chr6_3:79197118-79197137 None:intergenic 20.0%
! ATGAAGCATATAAGCTTATA+CGG - chr6_3:79189158-79189177 Msa0960160:three_prime_UTR 25.0%
! AGTGAAGAAATTAAAAGAGA+AGG + chr6_3:79189235-79189254 None:intergenic 25.0%
! AGCAATTTAGTCTATGATAT+TGG - chr6_3:79189401-79189420 Msa0960160:three_prime_UTR 25.0%
! ATTCATTCTCATAAGAAACA+TGG + chr6_3:79189543-79189562 None:intergenic 25.0%
! TTCAAAGAATGGTGAATATA+TGG + chr6_3:79189834-79189853 None:intergenic 25.0%
! ACATATATGAACATGTTTGA+TGG - chr6_3:79189889-79189908 Msa0960160:intron 25.0%
! CATATATGAACATGTTTGAT+GGG - chr6_3:79189890-79189909 Msa0960160:intron 25.0%
!!! CTATGTTTACTTTTGTTGAA+GGG + chr6_3:79190109-79190128 None:intergenic 25.0%
!!! ACTCTACTTTTGTCTAAAAA+TGG + chr6_3:79190519-79190538 None:intergenic 25.0%
! AAGAAAAAATTGATCTGGTT+TGG + chr6_3:79190997-79191016 None:intergenic 25.0%
!!! ACCAGATCAATTTTTTCTTT+AGG - chr6_3:79190998-79191017 Msa0960160:intron 25.0%
! TCCTAAAGAAAAAATTGATC+TGG + chr6_3:79191002-79191021 None:intergenic 25.0%
! ATTCTAAATACCAACCTTTA+AGG + chr6_3:79191216-79191235 None:intergenic 25.0%
!!! AAGGTTGGTATTTAGAATTT+TGG - chr6_3:79191218-79191237 Msa0960160:intron 25.0%
!!! TTTTTTCTTCTTCTCTCTTT+TGG + chr6_3:79191274-79191293 None:intergenic 25.0%
! TTCAGTTGAATTTCTAAACT+AGG - chr6_3:79191426-79191445 Msa0960160:intron 25.0%
! TCAGTTGAATTTCTAAACTA+GGG - chr6_3:79191427-79191446 Msa0960160:intron 25.0%
!! TTTCTTTTATCTGAAAACAG+AGG - chr6_3:79191450-79191469 Msa0960160:intron 25.0%
!! TTCTTTTATCTGAAAACAGA+GGG - chr6_3:79191451-79191470 Msa0960160:intron 25.0%
! TGTAGTACAATTTACAATAC+AGG - chr6_3:79191629-79191648 Msa0960160:intron 25.0%
! GTAGTACAATTTACAATACA+GGG - chr6_3:79191630-79191649 Msa0960160:intron 25.0%
! CTATTCAAGTATATGATCAA+TGG + chr6_3:79191713-79191732 None:intergenic 25.0%
! AACATTAATAGTAACCAACA+AGG - chr6_3:79191779-79191798 Msa0960160:intron 25.0%
! TTTAGTTAGTGTGCTTAATT+TGG - chr6_3:79191998-79192017 Msa0960160:intron 25.0%
! ATGACAAGAATATACTATCA+TGG + chr6_3:79192075-79192094 None:intergenic 25.0%
! TATAATGCTTATTATGCACA+AGG + chr6_3:79192317-79192336 None:intergenic 25.0%
! ACAATGCATTATTATATGCA+GGG - chr6_3:79192363-79192382 Msa0960160:intron 25.0%
! TATAATCCATAGAACAATCT+TGG + chr6_3:79192577-79192596 None:intergenic 25.0%
!!! ATAATTACTTTTTTTTGGGC+AGG - chr6_3:79192888-79192907 Msa0960160:intron 25.0%
!!! TAATTACTTTTTTTTGGGCA+GGG - chr6_3:79192889-79192908 Msa0960160:intron 25.0%
! TTATGCTTACTAGTTGAATT+AGG + chr6_3:79193038-79193057 None:intergenic 25.0%
!! AGGTTCATATTTTATCTGTT+TGG - chr6_3:79193509-79193528 Msa0960160:intron 25.0%
!! TCATATTTTATCTGTTTGGT+TGG - chr6_3:79193513-79193532 Msa0960160:intron 25.0%
!! CATATTTTATCTGTTTGGTT+GGG - chr6_3:79193514-79193533 Msa0960160:intron 25.0%
!!! GGATAATTTTGATGTACATT+TGG - chr6_3:79193535-79193554 Msa0960160:intron 25.0%
! AAGTGATGAAAAATATGTTG+AGG + chr6_3:79193584-79193603 None:intergenic 25.0%
!! TCAACATATTTTTCATCACT+TGG - chr6_3:79193583-79193602 Msa0960160:intron 25.0%
! TCACATGAAAATCATATGAT+GGG + chr6_3:79193705-79193724 None:intergenic 25.0%
! TTCACATGAAAATCATATGA+TGG + chr6_3:79193706-79193725 None:intergenic 25.0%
!! GAAATTTTCCCTAGAAAAAA+AGG + chr6_3:79193729-79193748 None:intergenic 25.0%
!! TTTTTGTGTCAATAGGTAAA+TGG - chr6_3:79193758-79193777 Msa0960160:intron 25.0%
!!! GATTTTTATCGATTTGTGTT+AGG - chr6_3:79194002-79194021 Msa0960160:intron 25.0%
! CATCACAAGTTAGAAATATT+AGG - chr6_3:79194033-79194052 Msa0960160:intron 25.0%
!!! GTTTTAGTAGAATTGACTTT+AGG - chr6_3:79194055-79194074 Msa0960160:intron 25.0%
! ATTATTATGATGTCACAAGA+TGG + chr6_3:79194758-79194777 None:intergenic 25.0%
! AAATTCATACAAACCAATTG+TGG - chr6_3:79194902-79194921 Msa0960160:intron 25.0%
! TCATTTACTATGTGATAAGA+TGG - chr6_3:79195057-79195076 Msa0960160:intron 25.0%
! CAAAAGACAAAAAGAAAACA+TGG + chr6_3:79195139-79195158 None:intergenic 25.0%
!!! ATATCATTAATTTGCAGCTA+AGG - chr6_3:79195416-79195435 Msa0960160:intron 25.0%
! AACTTAAAAAACCAAGTATG+AGG + chr6_3:79195602-79195621 None:intergenic 25.0%
! TCAAAGAAAAGAAAAACAAG+TGG - chr6_3:79195630-79195649 Msa0960160:intron 25.0%
! CAAAGAAAAGAAAAACAAGT+GGG - chr6_3:79195631-79195650 Msa0960160:intron 25.0%
! TTTATAGTAGCATGTGTATT+TGG - chr6_3:79195820-79195839 Msa0960160:intron 25.0%
! TAACCTATTTAGCATATGTT+AGG - chr6_3:79196081-79196100 Msa0960160:intron 25.0%
! ATACCTAACATATGCTAAAT+AGG + chr6_3:79196087-79196106 None:intergenic 25.0%
!! ATAGATCCTTTAAGTTTCTA+AGG + chr6_3:79196590-79196609 None:intergenic 25.0%
! TAGAACAATAGATCTTATGA+AGG + chr6_3:79196676-79196695 None:intergenic 25.0%
! ACTATCTGATAGATCAAAAT+TGG + chr6_3:79196839-79196858 None:intergenic 25.0%
!!! TAATTTTAGTCAGAACCAAT+TGG - chr6_3:79196861-79196880 Msa0960160:five_prime_UTR 25.0%
! AGGATATATGAACATGTAAA+TGG + chr6_3:79196979-79196998 None:intergenic 25.0%
! TTTACATGTTCATATATCCT+TGG - chr6_3:79196979-79196998 Msa0960160:five_prime_UTR 25.0%
! AATTTATCAGTTCAATGCAT+TGG - chr6_3:79197057-79197076 Msa0960160:five_prime_UTR 25.0%
! ATTTATCAGTTCAATGCATT+GGG - chr6_3:79197058-79197077 Msa0960160:five_prime_UTR 25.0%
AGAAATTAAAAGAGAAGGAG+TGG + chr6_3:79189230-79189249 None:intergenic 30.0%
! TTTCTCTTGTTTCTCTCAAT+TGG - chr6_3:79189340-79189359 Msa0960160:three_prime_UTR 30.0%
GAGAGAAAAAGAGAGATTAA+GGG - chr6_3:79189362-79189381 Msa0960160:three_prime_UTR 30.0%
! ACTTTTGTTGAAGGGTAAAT+AGG + chr6_3:79190101-79190120 None:intergenic 30.0%
!! CCTATGTTTACTTTTGTTGA+AGG + chr6_3:79190110-79190129 None:intergenic 30.0%
CCTTCAACAAAAGTAAACAT+AGG - chr6_3:79190107-79190126 Msa0960160:intron 30.0%
AAAACTCTTTAGCACTACAA+AGG - chr6_3:79190368-79190387 Msa0960160:intron 30.0%
TTTACCTTCTACAAGAAGAT+TGG + chr6_3:79191057-79191076 None:intergenic 30.0%
AAATTCCATAGAACATTCCT+TGG + chr6_3:79191106-79191125 None:intergenic 30.0%
!!! TATGGAATTTTATTTTGGGG+TGG - chr6_3:79191116-79191135 Msa0960160:intron 30.0%
!!! ATGGAATTTTATTTTGGGGT+GGG - chr6_3:79191117-79191136 Msa0960160:intron 30.0%
CATTAAGATTCCCTTCAATT+TGG + chr6_3:79191179-79191198 None:intergenic 30.0%
AATCAGAACTCTAACCTTAA+CGG - chr6_3:79191372-79191391 Msa0960160:intron 30.0%
! ATAAAAACTTGTTCCCGTTA+AGG + chr6_3:79191389-79191408 None:intergenic 30.0%
CTTCAACTATAAGCTTCAAT+TGG + chr6_3:79191573-79191592 None:intergenic 30.0%
! GAAAAGACTCACCAATTTTA+TGG + chr6_3:79191608-79191627 None:intergenic 30.0%
AGAATAGAAGATCTTCTTAG+TGG - chr6_3:79191658-79191677 Msa0960160:intron 30.0%
TGAATAGTGTGTAACATTAG+TGG - chr6_3:79191726-79191745 Msa0960160:CDS 30.0%
ACATTAGTGGAAGAAAAAGA+TGG - chr6_3:79191739-79191758 Msa0960160:CDS 30.0%
!! TTAATGTTGTTGCTTTCTCT+TGG + chr6_3:79191767-79191786 None:intergenic 30.0%
AAATGCATCAAATCCTTTGA+TGG - chr6_3:79191841-79191860 Msa0960160:intron 30.0%
!!! TTTTCTAGCTGCTAATATGT+TGG - chr6_3:79191886-79191905 Msa0960160:intron 30.0%
CAATTGACTATAGAGGATTT+AGG + chr6_3:79192029-79192048 None:intergenic 30.0%
AAAGTTGGAAAAGACTGTTT+GGG - chr6_3:79192146-79192165 Msa0960160:intron 30.0%
GACAATGCATTATTATATGC+AGG - chr6_3:79192362-79192381 Msa0960160:intron 30.0%
GTAGTCTAGTGACTATAAAT+GGG + chr6_3:79192412-79192431 None:intergenic 30.0%
AGTAGTCTAGTGACTATAAA+TGG + chr6_3:79192413-79192432 None:intergenic 30.0%
AGAGATCAATCAATTCAGAA+GGG + chr6_3:79192623-79192642 None:intergenic 30.0%
TAGAGATCAATCAATTCAGA+AGG + chr6_3:79192624-79192643 None:intergenic 30.0%
TCTGAATTGATTGATCTCTA+TGG - chr6_3:79192624-79192643 Msa0960160:CDS 30.0%
AATTGATTGATCTCTATGGT+TGG - chr6_3:79192628-79192647 Msa0960160:CDS 30.0%
ATCAAGCCAAATGATTCAAT+CGG - chr6_3:79192707-79192726 Msa0960160:CDS 30.0%
!!! AATTACTTTTTTTTGGGCAG+GGG - chr6_3:79192890-79192909 Msa0960160:intron 30.0%
CAGAAAAATATGCAGAAAGA+TGG - chr6_3:79193094-79193113 Msa0960160:intron 30.0%
AAATATGCAGAAAGATGGTA+TGG - chr6_3:79193099-79193118 Msa0960160:intron 30.0%
! ACGATATGATGTGTTTTCAT+TGG + chr6_3:79193330-79193349 None:intergenic 30.0%
TGATGAAAAATATGTTGAGG+AGG + chr6_3:79193581-79193600 None:intergenic 30.0%
! AAATCATATGATGGGAGAAA+AGG + chr6_3:79193697-79193716 None:intergenic 30.0%
!!! TCATGTGAACCTTTTTTTCT+AGG - chr6_3:79193717-79193736 Msa0960160:intron 30.0%
!!! CATGTGAACCTTTTTTTCTA+GGG - chr6_3:79193718-79193737 Msa0960160:intron 30.0%
!!! GTGAACTTTTTTGTGTCAAT+AGG - chr6_3:79193751-79193770 Msa0960160:intron 30.0%
!! ATTTTAAGTCCAGGATTGAT+GGG - chr6_3:79193785-79193804 Msa0960160:intron 30.0%
TATATGTTGTCTTCCTTTGT+TGG - chr6_3:79193810-79193829 Msa0960160:intron 30.0%
TTTAGCATGTATTTAGTGTG+CGG - chr6_3:79193907-79193926 Msa0960160:intron 30.0%
AAAGATTCTAAGCATGTGTT+TGG + chr6_3:79194331-79194350 None:intergenic 30.0%
! CTTAGAATCTTTTCTCCAAA+AGG - chr6_3:79194339-79194358 Msa0960160:CDS 30.0%
! TGTGTTTTATATTGCATCCA+TGG + chr6_3:79194367-79194386 None:intergenic 30.0%
ATATGTTCTCAAGTAACAAG+AGG + chr6_3:79194672-79194691 None:intergenic 30.0%
TTAAGCAATGTTGTCAAAAC+TGG + chr6_3:79195036-79195055 None:intergenic 30.0%
! GTTATTGCAACATTTTCAAC+AGG - chr6_3:79195300-79195319 Msa0960160:intron 30.0%
!! ATTAATTTGCAGCTAAGGAA+GGG - chr6_3:79195421-79195440 Msa0960160:intron 30.0%
TGGAAAAAACCATATCCATA+TGG + chr6_3:79195475-79195494 None:intergenic 30.0%
TACTTTGCAATGCTATTGAT+TGG - chr6_3:79195520-79195539 Msa0960160:intron 30.0%
CATCATTCAATGAGAAAGTA+TGG - chr6_3:79195553-79195572 Msa0960160:intron 30.0%
TTCCATCTTGTTCATGTTAT+GGG - chr6_3:79195576-79195595 Msa0960160:intron 30.0%
ATATGTTTCCAATGAAGCTT+AGG - chr6_3:79195701-79195720 Msa0960160:intron 30.0%
CAGAATAGTAAATGAATGGT+TGG - chr6_3:79195974-79195993 Msa0960160:intron 30.0%
ATCATATTGCTTCCGAAAAA+AGG + chr6_3:79196031-79196050 None:intergenic 30.0%
TTAGCATATGTTAGGTATCA+CGG - chr6_3:79196089-79196108 Msa0960160:intron 30.0%
TAGCTTATAGAAAATCATGG+TGG + chr6_3:79196139-79196158 None:intergenic 30.0%
GTGTAGCTTATAGAAAATCA+TGG + chr6_3:79196142-79196161 None:intergenic 30.0%
GAAACAAACGTGAAACTTAA+AGG + chr6_3:79196612-79196631 None:intergenic 30.0%
! ATAGGTCCTTTAAGTTTCTA+AGG - chr6_3:79196428-79196447 Msa0960160:intron 30.0%
! ATAGGTCCTTTAAGTTTCTA+AGG - chr6_3:79196428-79196447 Msa0960160:intron 30.0%
CTGAAACCTTAGAAACTTAA+AGG + chr6_3:79196552-79196571 None:intergenic 30.0%
!! AAGTTTCTAAGGTTTCAGAT+AGG - chr6_3:79196468-79196487 Msa0960160:intron 30.0%
GAAACAAACTCGAAACTTAA+AGG - chr6_3:79196523-79196542 Msa0960160:intron 30.0%
!! AAGTTTCTAAGGTTTCAGAT+AGG + chr6_3:79196468-79196487 None:intergenic 30.0%
CTGAAACCTTAGAAACTTAA+AGG - chr6_3:79196552-79196571 Msa0960160:intron 30.0%
! ATAGGTCCTTTAAGTTTCTA+AGG + chr6_3:79196428-79196447 None:intergenic 30.0%
GAAACAAACGTGAAACTTAA+AGG - chr6_3:79196612-79196631 Msa0960160:intron 30.0%
TTGTTCTAATGCACATCTAA+TGG - chr6_3:79196688-79196707 Msa0960160:intron 30.0%
ATTATGCTCGTACTATGTAA+TGG - chr6_3:79196807-79196826 Msa0960160:intron 30.0%
CGTTACTTACAATCATTAGA+TGG - chr6_3:79197003-79197022 Msa0960160:five_prime_UTR 30.0%
AATTAAAAGAGAAGGAGTGG+TGG + chr6_3:79189227-79189246 None:intergenic 35.0%
GGAGAGAAAAAGAGAGATTA+AGG - chr6_3:79189361-79189380 Msa0960160:three_prime_UTR 35.0%
TTGTTTCCTTTGTAGCTTTC+GGG + chr6_3:79190399-79190418 None:intergenic 35.0%
CTTGTTTCCTTTGTAGCTTT+CGG + chr6_3:79190400-79190419 None:intergenic 35.0%
TTACTCTATATAGTTGTGCG+TGG - chr6_3:79190741-79190760 Msa0960160:CDS 35.0%
CATACCAATCTTCTTGTAGA+AGG - chr6_3:79191050-79191069 Msa0960160:intron 35.0%
!!! AATTTTATTTTGGGGTGGGA+GGG - chr6_3:79191121-79191140 Msa0960160:intron 35.0%
ACTACTACCATCCAAATTGA+AGG - chr6_3:79191165-79191184 Msa0960160:intron 35.0%
CTACTACCATCCAAATTGAA+GGG - chr6_3:79191166-79191185 Msa0960160:intron 35.0%
AAGATTCCCTTCAATTTGGA+TGG + chr6_3:79191175-79191194 None:intergenic 35.0%
TGAAGGGAATCTTAATGACA+TGG - chr6_3:79191182-79191201 Msa0960160:intron 35.0%
CTTCTAAATGATTCATGCGT+AGG + chr6_3:79191352-79191371 None:intergenic 35.0%
ATCAGAACTCTAACCTTAAC+GGG - chr6_3:79191373-79191392 Msa0960160:intron 35.0%
TGTGAAAGGAAAAAGGCTAA+TGG - chr6_3:79191518-79191537 Msa0960160:intron 35.0%
AATAGTAACCAACAAGGTTG+TGG - chr6_3:79191785-79191804 Msa0960160:intron 35.0%
TAGACATATCTTGCCATCAA+AGG + chr6_3:79191857-79191876 None:intergenic 35.0%
! TTGATGGCAAGATATGTCTA+TGG - chr6_3:79191857-79191876 Msa0960160:intron 35.0%
TGACTATAGAGGATTTAGGT+TGG + chr6_3:79192025-79192044 None:intergenic 35.0%
!!! GGTTTTAAAGCATGCAAAGT+TGG - chr6_3:79192131-79192150 Msa0960160:intron 35.0%
CAAAGTTGGAAAAGACTGTT+TGG - chr6_3:79192145-79192164 Msa0960160:intron 35.0%
GCATTATTATATGCAGGGAT+CGG - chr6_3:79192368-79192387 Msa0960160:intron 35.0%
CATTATTATATGCAGGGATC+GGG - chr6_3:79192369-79192388 Msa0960160:intron 35.0%
ATTATTATATGCAGGGATCG+GGG - chr6_3:79192370-79192389 Msa0960160:intron 35.0%
!!! TGATGTTTTGGTCAACTACA+AGG - chr6_3:79192499-79192518 Msa0960160:intron 35.0%
TGAATGAACCAAGAGATACA+TGG - chr6_3:79192532-79192551 Msa0960160:intron 35.0%
GTTCAACCGATTGAATCATT+TGG + chr6_3:79192716-79192735 None:intergenic 35.0%
!! GCTTTAAAATTGTCGGTTCA+CGG + chr6_3:79192738-79192757 None:intergenic 35.0%
GCAATTGAACTATGACTTGA+AGG - chr6_3:79192756-79192775 Msa0960160:CDS 35.0%
TGCTTACTAGTTGAATTAGG+AGG + chr6_3:79193035-79193054 None:intergenic 35.0%
GCATAATCAGCTTCATTACT+TGG - chr6_3:79193052-79193071 Msa0960160:intron 35.0%
! GATGTGTTTTCATTGGATGT+CGG + chr6_3:79193323-79193342 None:intergenic 35.0%
CAAATACCATCACATGGATT+TGG + chr6_3:79193485-79193504 None:intergenic 35.0%
GAGATACACTTGTCATGATT+TGG + chr6_3:79193623-79193642 None:intergenic 35.0%
TTGTGTCAATAGGTAAATGG+TGG - chr6_3:79193761-79193780 Msa0960160:intron 35.0%
!! CATTTTAAGTCCAGGATTGA+TGG - chr6_3:79193784-79193803 Msa0960160:intron 35.0%
!! TTTTAAGTCCAGGATTGATG+GGG - chr6_3:79193786-79193805 Msa0960160:intron 35.0%
TAGTGTGCGGTGATAAAAAT+TGG - chr6_3:79193920-79193939 Msa0960160:intron 35.0%
!! AGTAGAATTGACTTTAGGGT+TGG - chr6_3:79194060-79194079 Msa0960160:intron 35.0%
!! GATTTTCGAAAGTACAATCG+CGG - chr6_3:79194152-79194171 Msa0960160:intron 35.0%
CAAAAATTTGATTGCGAACG+TGG - chr6_3:79194303-79194322 Msa0960160:intron 35.0%
TATAAGACATGATTGCATGC+AGG + chr6_3:79194395-79194414 None:intergenic 35.0%
ATTATGATGTCACAAGATGG+TGG + chr6_3:79194755-79194774 None:intergenic 35.0%
AACTTAACCAGAGAAGAAAC+CGG - chr6_3:79194805-79194824 Msa0960160:intron 35.0%
CATGGTTCAATTCGTCTAAT+CGG - chr6_3:79194842-79194861 Msa0960160:intron 35.0%
TTCGTCTAATCGGTTAAACT+AGG - chr6_3:79194852-79194871 Msa0960160:intron 35.0%
TCGTCTAATCGGTTAAACTA+GGG - chr6_3:79194853-79194872 Msa0960160:intron 35.0%
AAACCAATTGTGGTTCAACT+TGG - chr6_3:79194912-79194931 Msa0960160:intron 35.0%
ACAAAACTGTGAATCAACTG+TGG - chr6_3:79194949-79194968 Msa0960160:intron 35.0%
!! AATCAACTAGTCTTCTAGGT+TGG + chr6_3:79194980-79194999 None:intergenic 35.0%
!! TAGGAATCAACTAGTCTTCT+AGG + chr6_3:79194984-79195003 None:intergenic 35.0%
TCGATTCAACTGGTTGAATT+AGG + chr6_3:79195003-79195022 None:intergenic 35.0%
AACACTACTGTCTTCAATGT+TGG - chr6_3:79195223-79195242 Msa0960160:intron 35.0%
TGACATGTGACAATAACTGT+TGG - chr6_3:79195247-79195266 Msa0960160:intron 35.0%
CATAGATTCCAAATGCTTTC+AGG - chr6_3:79195323-79195342 Msa0960160:intron 35.0%
!! GAAACAAACCTGAAAGCATT+TGG + chr6_3:79195334-79195353 None:intergenic 35.0%
!! CATTAATTTGCAGCTAAGGA+AGG - chr6_3:79195420-79195439 Msa0960160:intron 35.0%
GAAGAAGATGATGTTCCATA+TGG - chr6_3:79195457-79195476 Msa0960160:intron 35.0%
GATGATGTTCCATATGGATA+TGG - chr6_3:79195463-79195482 Msa0960160:intron 35.0%
!!! TTCCATTTTGTTTTTGCCAC+AGG - chr6_3:79195490-79195509 Msa0960160:intron 35.0%
! TTGCAATGCTATTGATTGGA+TGG - chr6_3:79195524-79195543 Msa0960160:intron 35.0%
GTTCCATCTTGTTCATGTTA+TGG - chr6_3:79195575-79195594 Msa0960160:intron 35.0%
GGGTCAGAATAGTAAATGAA+TGG - chr6_3:79195970-79195989 Msa0960160:intron 35.0%
TTGTAGCTTCTACGAAATCA+CGG - chr6_3:79196163-79196182 Msa0960160:intron 35.0%
ATTTGATGTCCACTACATGT+CGG - chr6_3:79196264-79196283 Msa0960160:intron 35.0%
GTTTCACGTTTGTTTCAGAT+AGG - chr6_3:79196410-79196429 Msa0960160:intron 35.0%
CTGACACCTTAGAAACTTAA+AGG + chr6_3:79196581-79196600 None:intergenic 35.0%
!! AAGTTTCTAAGGTGTCAGAT+AGG - chr6_3:79196439-79196458 Msa0960160:intron 35.0%
!! GTTTCGAGTTTGTTTCAGAT+AGG + chr6_3:79196519-79196538 None:intergenic 35.0%
!! AAGTTTCTAAGGTGTCAGAT+AGG + chr6_3:79196439-79196458 None:intergenic 35.0%
CTGACACCTTAGAAACTTAA+AGG - chr6_3:79196581-79196600 Msa0960160:intron 35.0%
TACATAGTACGAGCATAATG+AGG + chr6_3:79196806-79196825 None:intergenic 35.0%
CATTTGTGCTAGAATCCAAT+TGG + chr6_3:79196879-79196898 None:intergenic 35.0%
! TATTTCTGTGTACCATCCTT+TGG + chr6_3:79196952-79196971 None:intergenic 35.0%
ATGATTGTAAGTAACGTCCA+AGG + chr6_3:79196999-79197018 None:intergenic 35.0%
TCGAGTTTAGTGAAAATCCC+TGG - chr6_3:79190301-79190320 Msa0960160:intron 40.0%
GAAAATCCCGAAAGCTACAA+AGG - chr6_3:79190390-79190409 Msa0960160:intron 40.0%
GTAGAAGGTAAATCAACCAC+AGG - chr6_3:79191065-79191084 Msa0960160:intron 40.0%
GTACGATAAAGTCTTACCTG+TGG + chr6_3:79191084-79191103 None:intergenic 40.0%
GGTAAGACTTTATCGTACCA+AGG - chr6_3:79191086-79191105 Msa0960160:intron 40.0%
TCGTACCAAGGAATGTTCTA+TGG - chr6_3:79191098-79191117 Msa0960160:intron 40.0%
!!! GAATTTTATTTTGGGGTGGG+AGG - chr6_3:79191120-79191139 Msa0960160:intron 40.0%
GGGAATCTTAATGACATGGT+AGG - chr6_3:79191186-79191205 Msa0960160:intron 40.0%
ACATGGTAGGCATACCTTAA+AGG - chr6_3:79191199-79191218 Msa0960160:intron 40.0%
AGAAGATCTTCTTAGTGGAG+TGG - chr6_3:79191663-79191682 Msa0960160:intron 40.0%
! GTGGACTAAAGGATTCTTCA+TGG - chr6_3:79191804-79191823 Msa0960160:intron 40.0%
TAGCTGCTAATATGTTGGCA+TGG - chr6_3:79191891-79191910 Msa0960160:intron 40.0%
AGCTGCTAATATGTTGGCAT+GGG - chr6_3:79191892-79191911 Msa0960160:intron 40.0%
!! TAGTGCATTGACTGAACTCA+AGG - chr6_3:79191940-79191959 Msa0960160:intron 40.0%
!! AGTGCATTGACTGAACTCAA+GGG - chr6_3:79191941-79191960 Msa0960160:intron 40.0%
!!! TGGTGTTTTGAGAGTTAGCA+TGG - chr6_3:79192175-79192194 Msa0960160:intron 40.0%
!!! GGTGTTTTGAGAGTTAGCAT+GGG - chr6_3:79192176-79192195 Msa0960160:intron 40.0%
! CTATGACTTGAAGGTCTTGT+TGG - chr6_3:79192765-79192784 Msa0960160:CDS 40.0%
!!! AAGTTGCACATTTTGGAGCA+GGG - chr6_3:79192913-79192932 Msa0960160:intron 40.0%
CTGTTGCAAATACCATCACA+TGG + chr6_3:79193491-79193510 None:intergenic 40.0%
CATGTGATGGTATTTGCAAC+AGG - chr6_3:79193489-79193508 Msa0960160:intron 40.0%
! AATATGTTGAGGAGGCATGA+TGG + chr6_3:79193573-79193592 None:intergenic 40.0%
!! AATGGTGGCATTTTAAGTCC+AGG - chr6_3:79193776-79193795 Msa0960160:intron 40.0%
TTCTGATTGCACACCAACAA+AGG + chr6_3:79193826-79193845 None:intergenic 40.0%
TTTGTTGGTGTGCAATCAGA+AGG - chr6_3:79193825-79193844 Msa0960160:intron 40.0%
! CTTTTCTCCAAAAGGAACCA+TGG - chr6_3:79194347-79194366 Msa0960160:CDS 40.0%
! ATTGCATCCATGGTTCCTTT+TGG + chr6_3:79194357-79194376 None:intergenic 40.0%
GATCAATGCATCAGAACATC+AGG - chr6_3:79194521-79194540 Msa0960160:five_prime_UTR 40.0%
! GATGTTTTGCCAGTCTGTTT+TGG + chr6_3:79194555-79194574 None:intergenic 40.0%
CGATTAGACGAATTGAACCA+TGG + chr6_3:79194844-79194863 None:intergenic 40.0%
! GAACCAAGTTGAACCACAAT+TGG + chr6_3:79194918-79194937 None:intergenic 40.0%
ATTCAACCAGTTGAATCGAC+CGG - chr6_3:79195004-79195023 Msa0960160:intron 40.0%
!! TGTTGGCAGAGCTTTGTTAT+TGG - chr6_3:79195264-79195283 Msa0960160:intron 40.0%
CTCCTGTGGCAAAAACAAAA+TGG + chr6_3:79195495-79195514 None:intergenic 40.0%
AGAATGCACCTAAGCTTCAT+TGG + chr6_3:79195712-79195731 None:intergenic 40.0%
TGAAGCTTAGGTGCATTCTT+TGG - chr6_3:79195713-79195732 Msa0960160:intron 40.0%
TGGAAACATTGTTCTGCAGA+TGG - chr6_3:79195919-79195938 Msa0960160:intron 40.0%
CATATGTTAGGTATCACGGT+GGG - chr6_3:79196093-79196112 Msa0960160:intron 40.0%
GATACCAAAGACACACTTAG+TGG - chr6_3:79196219-79196238 Msa0960160:intron 40.0%
!! TTTTTGGCCAAATACCTCCA+TGG - chr6_3:79196378-79196397 Msa0960160:intron 40.0%
! TTTTGGCCAAATACCTCCAT+GGG - chr6_3:79196379-79196398 Msa0960160:intron 40.0%
GGTTTCAGATAGGTCCTTAA+CGG - chr6_3:79196478-79196497 Msa0960160:intron 40.0%
TGCTGATAGCTCCAATTGTA+TGG - chr6_3:79196739-79196758 Msa0960160:intron 40.0%
GATAGCTCCAATTGTATGGA+AGG - chr6_3:79196743-79196762 Msa0960160:intron 40.0%
TGTCTTGCCTTCCATACAAT+TGG + chr6_3:79196753-79196772 None:intergenic 40.0%
TGGGTTCTTGTAGAAGTCTA+TGG - chr6_3:79197077-79197096 Msa0960160:five_prime_UTR 40.0%
GGTAGGCATACCTTAAAGGT+TGG - chr6_3:79191203-79191222 Msa0960160:intron 45.0%
CCTTTAGTCCACAACCTTGT+TGG + chr6_3:79191796-79191815 None:intergenic 45.0%
! CCAACAAGGTTGTGGACTAA+AGG - chr6_3:79191793-79191812 Msa0960160:intron 45.0%
! AAAGACTGTTTGGGAGCACA+TGG - chr6_3:79192155-79192174 Msa0960160:intron 45.0%
TTGTCCCTGTGTTATGCTCA+CGG + chr6_3:79192347-79192366 None:intergenic 45.0%
GACTATAAATGGGATGTCCG+AGG + chr6_3:79192402-79192421 None:intergenic 45.0%
CCAGAATGCCATGTATCTCT+TGG + chr6_3:79192543-79192562 None:intergenic 45.0%
CCAAGAGATACATGGCATTC+TGG - chr6_3:79192540-79192559 Msa0960160:intron 45.0%
GAGATACATGGCATTCTGGA+TGG - chr6_3:79192544-79192563 Msa0960160:intron 45.0%
ATACATGGCATTCTGGATGG+TGG - chr6_3:79192547-79192566 Msa0960160:intron 45.0%
TACATGGCATTCTGGATGGT+GGG - chr6_3:79192548-79192567 Msa0960160:intron 45.0%
GGGCAACCAAGATTGTTCTA+TGG - chr6_3:79192568-79192587 Msa0960160:intron 45.0%
!!! GGTCTTGTTGGTTCGTTTTC+TGG - chr6_3:79192777-79192796 Msa0960160:intron 45.0%
!!! GAAGTTGCACATTTTGGAGC+AGG - chr6_3:79192912-79192931 Msa0960160:intron 45.0%
! TTGAGGAGGCATGATGGTAT+TGG + chr6_3:79193567-79193586 None:intergenic 45.0%
ACATATAGCCCCATCAATCC+TGG + chr6_3:79193797-79193816 None:intergenic 45.0%
! CTGATGCATTGATCTCCTTC+TGG + chr6_3:79194515-79194534 None:intergenic 45.0%
GCACTGTAACCAAAACAGAC+TGG - chr6_3:79194543-79194562 Msa0960160:five_prime_UTR 45.0%
TTGTCAAAACTGGACCGAAC+CGG + chr6_3:79195026-79195045 None:intergenic 45.0%
GGAACATCATCTTCTTCTGC+TGG + chr6_3:79195454-79195473 None:intergenic 45.0%
TGCAAAGTACATAGCTCCTG+TGG + chr6_3:79195509-79195528 None:intergenic 45.0%
GGCCCATAACATGAACAAGA+TGG + chr6_3:79195581-79195600 None:intergenic 45.0%
CATGTTATGGGCCTCATACT+TGG - chr6_3:79195588-79195607 Msa0960160:intron 45.0%
TGCAGATGGTCACTTGATGT+GGG - chr6_3:79195933-79195952 Msa0960160:intron 45.0%
TACTATTCTGACCCAAGCAC+TGG + chr6_3:79195964-79195983 None:intergenic 45.0%
GCATATGTTAGGTATCACGG+TGG - chr6_3:79196092-79196111 Msa0960160:intron 45.0%
GTGTGTCTTTGGTATCACAG+TGG + chr6_3:79196215-79196234 None:intergenic 45.0%
GTTGCCACTAAGTGTGTCTT+TGG + chr6_3:79196226-79196245 None:intergenic 45.0%
!! AAAGGACCCATGGAGGTATT+TGG + chr6_3:79196388-79196407 None:intergenic 45.0%
GAAACTTAAAGGACCCATGG+AGG + chr6_3:79196395-79196414 None:intergenic 45.0%
CGTGAAACTTAAAGGACCCA+TGG + chr6_3:79196620-79196639 None:intergenic 45.0%
TTCAGATAGGTCCTTAACGG+AGG - chr6_3:79196481-79196500 Msa0960160:intron 45.0%
CCTTCTATCAACCTCCGTTA+AGG + chr6_3:79196495-79196514 None:intergenic 45.0%
!! CCTTAACGGAGGTTGATAGA+AGG - chr6_3:79196492-79196511 Msa0960160:intron 45.0%
ACGTGAAACTTAAAGGACCC+AGG - chr6_3:79196619-79196638 Msa0960160:intron 45.0%
CGTGAAACTTAAAGGACCCA+GGG - chr6_3:79196620-79196639 Msa0960160:intron 45.0%
AAATGGCCAAATACCTCCCT+GGG + chr6_3:79196639-79196658 None:intergenic 45.0%
AAAATGGCCAAATACCTCCC+TGG + chr6_3:79196640-79196659 None:intergenic 45.0%
ACTCCTCTCATTCCATCCAA+AGG - chr6_3:79196933-79196952 Msa0960160:five_prime_UTR 45.0%
CATCCTTTGGATGGAATGAG+AGG + chr6_3:79196939-79196958 None:intergenic 45.0%
CTCTCATTCCATCCAAAGGA+TGG - chr6_3:79196937-79196956 Msa0960160:five_prime_UTR 45.0%
TCTGTGTACCATCCTTTGGA+TGG + chr6_3:79196948-79196967 None:intergenic 45.0%
!!! TCTATTATATATTTAAAATA+GGG - chr6_3:79192820-79192839 Msa0960160:intron 5.0%
!!! TTTATTTTGGGGTGGGAGGG+TGG - chr6_3:79191124-79191143 Msa0960160:intron 50.0%
!!! TTATTTTGGGGTGGGAGGGT+GGG - chr6_3:79191125-79191144 Msa0960160:intron 50.0%
ACATCCCGTGAGCATAACAC+AGG - chr6_3:79192339-79192358 Msa0960160:intron 50.0%
CATCCCGTGAGCATAACACA+GGG - chr6_3:79192340-79192359 Msa0960160:intron 50.0%
TGTCCCTGTGTTATGCTCAC+GGG + chr6_3:79192346-79192365 None:intergenic 50.0%
! GCAGGGGAAGTTGCACATTT+TGG - chr6_3:79192906-79192925 Msa0960160:intron 50.0%
GTGCAGCCAAATCCATGTGA+TGG - chr6_3:79193476-79193495 Msa0960160:intron 50.0%
TGTGCATGCAGTGAACCAGA+AGG - chr6_3:79194497-79194516 Msa0960160:CDS 50.0%
!! AGTCTCACCGGTTTCTTCTC+TGG + chr6_3:79194815-79194834 None:intergenic 50.0%
ACCAGTTGAATCGACCGGTT+CGG - chr6_3:79195009-79195028 Msa0960160:intron 50.0%
CTGCAGATGGTCACTTGATG+TGG - chr6_3:79195932-79195951 Msa0960160:intron 50.0%
GAAACTTAAAGGACCCAGGG+AGG - chr6_3:79196623-79196642 Msa0960160:intron 50.0%
!! AAAGGACCCAGGGAGGTATT+TGG - chr6_3:79196630-79196649 Msa0960160:intron 50.0%
!!! TATTTTGGGGTGGGAGGGTG+GGG - chr6_3:79191126-79191145 Msa0960160:intron 55.0%
CCATGGCTCAGAAGTCTCAC+CGG + chr6_3:79194827-79194846 None:intergenic 55.0%
! ACCGAACCGGTCGATTCAAC+TGG + chr6_3:79195013-79195032 None:intergenic 55.0%
GATGGTCACTTGATGTGGGC+TGG - chr6_3:79195937-79195956 Msa0960160:intron 55.0%
CGTCTCACACCGACATGTAG+TGG + chr6_3:79196276-79196295 None:intergenic 55.0%
!!! ATTTTGGGGTGGGAGGGTGG+GGG - chr6_3:79191127-79191146 Msa0960160:intron 60.0%
AGGGATCGGGGTTCGAACCT+CGG - chr6_3:79192382-79192401 Msa0960160:intron 60.0%
CCGGTGAGACTTCTGAGCCA+TGG - chr6_3:79194824-79194843 Msa0960160:intron 60.0%
!! ATGTGGGCTGGACCAGTGCT+TGG - chr6_3:79195949-79195968 Msa0960160:intron 60.0%
!! TGTGGGCTGGACCAGTGCTT+GGG - chr6_3:79195950-79195969 Msa0960160:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 79189127 79197147 79189127 ID=Msa0960160;Name=Msa0960160
chr6_3 mRNA 79189127 79197147 79189127 ID=Msa0960160-mRNA-1;Parent=Msa0960160;Name=Msa0960160-mRNA-1;_AED=0.14;_eAED=0.14;_QI=420|0.5|0.63|1|0.3|0.27|11|369|298
chr6_3 exon 79189127 79189541 79189127 ID=Msa0960160-mRNA-1:exon:14081;Parent=Msa0960160-mRNA-1
chr6_3 exon 79190705 79190841 79190705 ID=Msa0960160-mRNA-1:exon:14080;Parent=Msa0960160-mRNA-1
chr6_3 exon 79191697 79191766 79191697 ID=Msa0960160-mRNA-1:exon:14079;Parent=Msa0960160-mRNA-1
chr6_3 exon 79192447 79192501 79192447 ID=Msa0960160-mRNA-1:exon:14078;Parent=Msa0960160-mRNA-1
chr6_3 exon 79192621 79192792 79192621 ID=Msa0960160-mRNA-1:exon:14077;Parent=Msa0960160-mRNA-1
chr6_3 exon 79193227 79193248 79193227 ID=Msa0960160-mRNA-1:exon:14076;Parent=Msa0960160-mRNA-1
chr6_3 exon 79193340 79193364 79193340 ID=Msa0960160-mRNA-1:exon:14075;Parent=Msa0960160-mRNA-1
chr6_3 exon 79193629 79193727 79193629 ID=Msa0960160-mRNA-1:exon:14074;Parent=Msa0960160-mRNA-1
chr6_3 exon 79194077 79194142 79194077 ID=Msa0960160-mRNA-1:exon:14073;Parent=Msa0960160-mRNA-1
chr6_3 exon 79194312 79194623 79194312 ID=Msa0960160-mRNA-1:exon:14072;Parent=Msa0960160-mRNA-1
chr6_3 exon 79196835 79197147 79196835 ID=Msa0960160-mRNA-1:exon:14071;Parent=Msa0960160-mRNA-1
chr6_3 five_prime_UTR 79196835 79197147 79196835 ID=Msa0960160-mRNA-1:five_prime_utr;Parent=Msa0960160-mRNA-1
chr6_3 five_prime_UTR 79194517 79194623 79194517 ID=Msa0960160-mRNA-1:five_prime_utr;Parent=Msa0960160-mRNA-1
chr6_3 CDS 79194312 79194516 79194312 ID=Msa0960160-mRNA-1:cds;Parent=Msa0960160-mRNA-1
chr6_3 CDS 79194077 79194142 79194077 ID=Msa0960160-mRNA-1:cds;Parent=Msa0960160-mRNA-1
chr6_3 CDS 79193629 79193727 79193629 ID=Msa0960160-mRNA-1:cds;Parent=Msa0960160-mRNA-1
chr6_3 CDS 79193340 79193364 79193340 ID=Msa0960160-mRNA-1:cds;Parent=Msa0960160-mRNA-1
chr6_3 CDS 79193227 79193248 79193227 ID=Msa0960160-mRNA-1:cds;Parent=Msa0960160-mRNA-1
chr6_3 CDS 79192621 79192792 79192621 ID=Msa0960160-mRNA-1:cds;Parent=Msa0960160-mRNA-1
chr6_3 CDS 79192447 79192501 79192447 ID=Msa0960160-mRNA-1:cds;Parent=Msa0960160-mRNA-1
chr6_3 CDS 79191697 79191766 79191697 ID=Msa0960160-mRNA-1:cds;Parent=Msa0960160-mRNA-1
chr6_3 CDS 79190705 79190841 79190705 ID=Msa0960160-mRNA-1:cds;Parent=Msa0960160-mRNA-1
chr6_3 CDS 79189496 79189541 79189496 ID=Msa0960160-mRNA-1:cds;Parent=Msa0960160-mRNA-1
chr6_3 three_prime_UTR 79189127 79189495 79189127 ID=Msa0960160-mRNA-1:three_prime_utr;Parent=Msa0960160-mRNA-1
Gene Sequence

>Msa0960160

ATGGAACCAAGAGAAAGCAACAACATTAATAGTAACCAACAAGGTTGTGGACTAAAGGATTCTTCATGGTGTTGTCAATTCAAAAATGCATCAAATCCTTTGATGGCAAGATATGTCTATGGCTTGATTTTTCTAGCTGCTAATATGTTGGCATGGGCTACACGTGATGAACTTTCTAGTATTAGTGCATTGACTGAACTCAAGGGTTTTAAAGCATGCAAAGTTGGAAAAGACTGTTTGGGAGCACATGGTGTTTTGAGAGTTAGCATGGATACATGGCATTCTGGATGGTGGGCAACCAAGATTGTTCTATGGATTATATTGACAATCTTTACATTTTTACTCCCTTCTGAATTGATTGATCTCTATGGGGAAGTTGCACATTTTGGAGCAGGGGTTTTCCTCCTAATTCAACTACCAAATCCATGTGATGGTATTTGCAACAGGTTCATATTTTATCTGTTTGGTTGGGATAATTTTGATGTACATTTGGTATGCACCAATACCATCATGCCTCCTCAACATATTTTTCATCACTTGGACTTTAGTACTTCTCCAAATCATGACAAGTGTATCTCTTCACCCAAAAGTAAATGGTGGCATTTTAAGTCCAGGATTGATGGGGCTATATGTTGTCTTCCTTTTGAACCAGAAGGAGATCAATGCATCAGAACATCAGGCACTGTAACCAAAACAGACTGGCAAAACATCATTCTAAGGAAGGGTGATAAACCAGCAGAAGAAGATGATGTTCCATATGGATATGGTTTTTTCCATTTTGTTTTTGCCACAGGAGCTATGTACTTTGCAATGCTATTGATTGGATGGAATACTCATCATTCAATGAGAAATATGGATGCTGATAGCTCCAATTGTATGGAAGGCAAGACAGACTGA

Protein sequence

>Msa0960160

MEPRESNNINSNQQGCGLKDSSWCCQFKNASNPLMARYVYGLIFLAANMLAWATRDELSSISALTELKGFKACKVGKDCLGAHGVLRVSMDTWHSGWWATKIVLWIILTIFTFLLPSELIDLYGEVAHFGAGVFLLIQLPNPCDGICNRFIFYLFGWDNFDVHLVCTNTIMPPQHIFHHLDFSTSPNHDKCISSPKSKWWHFKSRIDGAICCLPFEPEGDQCIRTSGTVTKTDWQNIILRKGDKPAEEDDVPYGYGFFHFVFATGAMYFAMLLIGWNTHHSMRNMDADSSNCMEGKTD*