AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0050760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0050760 MtrunA17_Chr1g0155721 96.581 117 4 0 2 118 3 119 3.31e-78 226
Msa0050760 MtrunA17_Chr3g0142051 80.909 110 21 0 2 111 3 112 2.17e-62 186
Msa0050760 MtrunA17_Chr5g0404831 67.593 108 35 0 4 111 7 114 7.78e-53 162
Msa0050760 MtrunA17_Chr7g0216481 50.980 102 50 0 11 112 32 133 4.85e-37 122
Msa0050760 MtrunA17_Chr8g0393201 50.000 108 54 0 4 111 226 333 6.71e-36 125
Msa0050760 MtrunA17_Chr8g0334481 40.566 106 63 0 3 108 24 129 3.11e-32 110
Msa0050760 MtrunA17_Chr7g0245141 39.286 112 68 0 3 114 22 133 6.84e-30 104
Msa0050760 MtrunA17_Chr5g0415761 44.954 109 60 0 5 113 20 128 1.20e-28 100
Msa0050760 MtrunA17_Chr5g0415771 45.283 106 58 0 7 112 21 126 7.71e-27 96.3
Msa0050760 MtrunA17_Chr2g0280411 38.261 115 71 0 4 118 8 122 1.60e-25 92.8
Msa0050760 MtrunA17_Chr5g0415741 42.202 109 63 0 5 113 18 126 3.03e-25 92.4
Msa0050760 MtrunA17_Chr2g0319291 33.929 112 74 0 4 115 9 120 4.32e-21 81.6
Msa0050760 MtrunA17_Chr4g0052481 38.298 94 56 1 8 99 62 155 1.30e-20 81.6
Msa0050760 MtrunA17_Chr4g0042051 35.294 102 66 0 4 105 9 110 1.26e-19 77.8
Msa0050760 MtrunA17_Chr1g0201781 40.789 76 44 1 25 99 76 151 3.29e-18 75.5
Msa0050760 MtrunA17_Chr3g0125821 35.780 109 65 3 8 114 70 175 4.69e-17 72.8
Msa0050760 MtrunA17_Chr6g0488561 30.172 116 76 3 5 117 75 188 7.35e-16 70.1
Msa0050760 MtrunA17_Chr7g0249461 38.095 105 61 2 5 108 79 180 1.36e-15 68.9
Msa0050760 MtrunA17_Chr3g0142031 70.732 41 12 0 61 101 5 45 1.45e-15 65.5
Msa0050760 MtrunA17_Chr7g0264661 33.721 86 55 1 26 111 44 127 1.73e-14 64.7
Msa0050760 MtrunA17_Chr2g0317731 39.474 76 45 1 25 99 84 159 4.15e-14 64.7
Msa0050760 MtrunA17_Chr3g0092051 28.319 113 76 3 4 113 86 196 1.80e-13 64.7
Msa0050760 MtrunA17_Chr8g0360031 36.364 88 54 2 25 110 87 174 3.44e-13 62.4
Msa0050760 MtrunA17_Chr1g0211871 36.842 95 48 4 26 114 85 173 5.23e-13 62.0
Msa0050760 MtrunA17_Chr4g0047431 31.132 106 69 1 5 110 3 104 1.01e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0050760 AT3G51030.1 68.519 108 34 0 4 111 5 112 1.28e-55 169
Msa0050760 AT1G45145.1 58.559 111 46 0 1 111 1 111 7.21e-48 149
Msa0050760 AT5G42980.1 58.120 117 49 0 1 117 1 117 8.29e-47 147
Msa0050760 AT1G19730.1 57.265 117 49 1 2 117 3 119 4.67e-43 137
Msa0050760 AT3G17880.2 41.667 108 63 0 4 111 262 369 3.51e-31 114
Msa0050760 AT3G17880.1 41.667 108 63 0 4 111 269 376 4.44e-31 113
Msa0050760 AT5G39950.1 42.991 107 61 0 6 112 26 132 5.17e-31 107
Msa0050760 AT3G56420.1 41.346 104 61 0 2 105 37 140 1.14e-29 104
Msa0050760 AT3G56420.2 41.346 104 61 0 2 105 37 140 1.14e-29 104
Msa0050760 AT3G56420.3 41.346 104 61 0 2 105 37 140 1.14e-29 104
Msa0050760 AT3G08710.2 38.182 110 68 0 5 114 23 132 5.98e-29 102
Msa0050760 AT3G08710.3 38.182 110 68 0 5 114 23 132 5.98e-29 102
Msa0050760 AT3G08710.1 38.182 110 68 0 5 114 23 132 5.98e-29 102
Msa0050760 AT1G59730.1 39.286 112 68 0 1 112 17 128 1.61e-28 101
Msa0050760 AT1G69880.1 37.963 108 67 0 7 114 39 146 1.02e-26 97.1
Msa0050760 AT2G40790.2 40.196 102 61 0 4 105 39 140 1.78e-25 94.0
Msa0050760 AT2G40790.1 40.196 102 61 0 4 105 39 140 1.78e-25 94.0
Msa0050760 AT1G11530.1 39.604 101 61 0 5 105 2 102 8.10e-23 86.3
Msa0050760 AT2G35010.2 37.615 109 66 1 2 108 81 189 1.31e-20 82.8
Msa0050760 AT2G35010.1 37.615 109 66 1 2 108 81 189 1.31e-20 82.8
Msa0050760 AT1G43560.1 37.778 90 50 2 25 108 74 163 2.12e-17 73.6
Msa0050760 AT1G76760.1 39.474 76 45 1 25 99 79 154 7.22e-17 72.4
Msa0050760 AT4G26160.1 32.727 110 69 3 6 112 94 201 1.49e-16 72.8
Msa0050760 AT5G16400.1 41.463 82 47 1 28 108 98 179 4.31e-16 70.9
Msa0050760 AT1G31020.1 38.372 86 51 1 15 98 59 144 9.08e-16 69.3
Msa0050760 AT3G02730.1 38.636 88 53 1 28 114 88 175 1.28e-15 69.3
Msa0050760 AT4G32580.1 31.915 94 64 0 17 110 11 104 1.41e-12 60.8
Msa0050760 AT1G03680.1 30.088 113 72 4 3 111 69 178 1.44e-12 61.2
Msa0050760 AT3G15360.1 34.940 83 52 2 30 110 107 189 1.62e-12 61.6
Msa0050760 AT3G53220.1 31.395 86 57 1 26 111 42 125 9.42e-12 58.2
Msa0050760 AT4G29670.1 26.364 110 76 3 6 112 104 211 1.24e-11 59.7
Msa0050760 AT4G29670.2 27.711 83 58 1 6 88 104 184 2.24e-11 58.9
Msa0050760 AT4G04950.1 31.915 94 64 0 17 110 11 104 2.66e-11 59.7
Msa0050760 AT4G03520.1 32.530 83 54 2 30 110 101 183 4.48e-11 57.4

Find 46 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAAAATGGTCCCTTCTTC+TGG 0.228096 1_2:-4763002 Msa0050760:three_prime_UTR
GGCAATTATGTTGATGAAAA+TGG 0.244274 1_2:-4763015 Msa0050760:three_prime_UTR
ATGACTTCAGGAGTCTTCTT+AGG 0.296484 1_2:+4763730 None:intergenic
TTAGGAATCTCAGCTAGAAT+TGG 0.349137 1_2:+4763748 None:intergenic
ATAATACATTTATCCTTTGT+CGG 0.372131 1_2:-4763170 Msa0050760:three_prime_UTR
AGAAGGTAAGGAAGTGGATA+AGG 0.412033 1_2:-4763291 Msa0050760:CDS
TGACATGGTCCCTTTGTTGA+TGG 0.437230 1_2:-4763040 Msa0050760:three_prime_UTR
CTTATTCTTGAAAGAAGGTA+AGG 0.442943 1_2:-4763303 Msa0050760:CDS
ATATATATCTGCATAATTGT+TGG 0.444889 1_2:+4762960 Msa0050750:three_prime_UTR
ACCTTCTTATTCTTGAAAGA+AGG 0.451509 1_2:-4763308 Msa0050760:CDS
ACCTTGAGGAAGATGACTTC+AGG 0.453976 1_2:+4763718 None:intergenic
AAATGCAATCACCAAGCATA+AGG 0.465102 1_2:-4763240 Msa0050760:CDS
AATAGTAATCAACCAGAAGA+AGG 0.477075 1_2:+4762990 None:intergenic
TAAGGTAGTTGGTGCTAGGA+AGG 0.479587 1_2:-4763273 Msa0050760:CDS
AGTCACTACTCAATTGAAGT+AGG 0.485104 1_2:+4763104 None:intergenic
TGGATAAGGTAGTTGGTGCT+AGG 0.488936 1_2:-4763277 Msa0050760:CDS
AAGGAAGTGGATAAGGTAGT+TGG 0.491604 1_2:-4763284 Msa0050760:CDS
AACAGTTGCATCCTTATGCT+TGG 0.492616 1_2:+4763229 None:intergenic
ACCTTCTTTCAAGAATAAGA+AGG 0.495256 1_2:+4763307 None:intergenic
TTGAAAATAAATTGTTGCAT+TGG 0.497916 1_2:-4763127 Msa0050760:three_prime_UTR
TTCAGAGTGTTGCTGAGGAA+TGG 0.506641 1_2:-4763349 Msa0050760:intron
GGTGGATATTGATGAAGTAA+AGG 0.509236 1_2:-4763698 Msa0050760:intron
ATGGTCCCTTTGTTGATGGT+TGG 0.517569 1_2:-4763036 Msa0050760:three_prime_UTR
CTAGAATTGGAGCAATAAAA+CGG 0.524722 1_2:+4763761 None:intergenic
CTTGAAAGAAGGTAAGGAAG+TGG 0.537499 1_2:-4763297 Msa0050760:CDS
TGGTGCTAGGAAGGAAGAGC+TGG 0.539272 1_2:-4763264 Msa0050760:CDS
TCTTTCAAGAATAAGAAGGT+TGG 0.555397 1_2:+4763311 None:intergenic
TCCTGAAGTCATCTTCCTCA+AGG 0.561588 1_2:-4763719 Msa0050760:CDS
CTCCTCCTTCCACTGTTCAA+CGG 0.563671 1_2:+4765327 None:intergenic
ATAGTAATCAACCAGAAGAA+GGG 0.567472 1_2:+4762991 None:intergenic
AATTGCCAACCATCAACAAA+GGG 0.573039 1_2:+4763031 None:intergenic
GAAAAGATGAAAACCGACAA+AGG 0.590952 1_2:+4763157 None:intergenic
CATTGAATAATAGATTGTGG+TGG 0.597012 1_2:-4763812 Msa0050760:intron
GCAGCTGAAGGACAGGTGAT+CGG 0.598988 1_2:-4765358 Msa0050760:CDS
GTGGAAGGAGGAGATCCAGA+AGG 0.606920 1_2:-4765317 Msa0050760:CDS
TGGAAGGAGGAGATCCAGAA+GGG 0.610530 1_2:-4765316 Msa0050760:CDS
TGCTGAGGAATGGTCTGTTG+AGG 0.618156 1_2:-4763339 Msa0050760:CDS
CTTCATCAATATCCACCTTG+AGG 0.619089 1_2:+4763704 None:intergenic
TCATACCGTTGAACAGTGGA+AGG 0.620633 1_2:-4765332 Msa0050760:CDS
TAATTGCCAACCATCAACAA+AGG 0.621385 1_2:+4763030 None:intergenic
ATTGGAGCAATAAAACGGCA+TGG 0.627618 1_2:+4763766 None:intergenic
CCTATTTCAGAGTGTTGCTG+AGG 0.630806 1_2:-4763354 Msa0050760:intron
TACCGTTGAACAGTGGAAGG+AGG 0.648899 1_2:-4765329 Msa0050760:CDS
TGAAGTCATCTTCCTCAAGG+TGG 0.658466 1_2:-4763716 Msa0050760:CDS
GTGTTCATACCGTTGAACAG+TGG 0.666984 1_2:-4765336 Msa0050760:CDS
ATAATTTGATGTAAATGACA+TGG 0.737526 1_2:-4763055 Msa0050760:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGTATATTTTAGTGTATTT+GGG - chr1_2:4763298-4763317 Msa0050760:CDS 15.0%
!!! ACAATTTTGTTTTTCATTAT+TGG + chr1_2:4763633-4763652 None:intergenic 15.0%
!! ATAAAATAAACTCTAAACAA+GGG - chr1_2:4764094-4764113 Msa0050760:intron 15.0%
!! TTAAATTAAGCATTTAATGT+AGG + chr1_2:4764147-4764166 None:intergenic 15.0%
!!! ATGTTTCTAATATTTTAAGA+TGG - chr1_2:4764924-4764943 Msa0050760:intron 15.0%
!!! CTTTTGGATCAAAATATATA+GGG + chr1_2:4763198-4763217 None:intergenic 20.0%
!!! ACTTTTGGATCAAAATATAT+AGG + chr1_2:4763199-4763218 None:intergenic 20.0%
!!! CATGTATATTTTAGTGTATT+TGG - chr1_2:4763297-4763316 Msa0050760:CDS 20.0%
!! GTTTGTGATGATATATTATA+TGG - chr1_2:4763421-4763440 Msa0050760:intron 20.0%
!! TGTTAAAAACCTAATTATAG+TGG - chr1_2:4763455-4763474 Msa0050760:intron 20.0%
!! CAAATTACTTATATATACTC+TGG + chr1_2:4763699-4763718 None:intergenic 20.0%
!! CAGAGTATATATAAGTAATT+TGG - chr1_2:4763697-4763716 Msa0050760:intron 20.0%
!! TTCTTCGAGTATTATATTAT+AGG + chr1_2:4763985-4764004 None:intergenic 20.0%
!!! CTTGTTTAGAGTTTATTTTA+TGG + chr1_2:4764095-4764114 None:intergenic 20.0%
!! CATAAAATAAACTCTAAACA+AGG - chr1_2:4764093-4764112 Msa0050760:intron 20.0%
!!! CAACAAAGAATTTATTTTGT+TGG - chr1_2:4764336-4764355 Msa0050760:intron 20.0%
!! ATAAAGGTGGTTATAAATTA+AGG + chr1_2:4764407-4764426 None:intergenic 20.0%
!! TTTCATTGAATAATAGATTG+TGG - chr1_2:4764551-4764570 Msa0050760:intron 20.0%
!! ATTAAACTTGAGAAAGAATA+AGG + chr1_2:4764719-4764738 None:intergenic 20.0%
!! ATAATACATTTATCCTTTGT+CGG - chr1_2:4765196-4765215 Msa0050760:intron 20.0%
!! TTGAAAATAAATTGTTGCAT+TGG - chr1_2:4765239-4765258 Msa0050760:intron 20.0%
!! ATAATTTGATGTAAATGACA+TGG - chr1_2:4765311-4765330 Msa0050760:CDS 20.0%
!! ATATATATCTGCATAATTGT+TGG + chr1_2:4765409-4765428 None:intergenic 20.0%
! ATTCGAAAGAAGAGAAAAAA+TGG - chr1_2:4762986-4763005 Msa0050760:three_prime_UTR 25.0%
!!! TTTGATGAATACCAGTTTTT+TGG + chr1_2:4763084-4763103 None:intergenic 25.0%
!! GAACAATTCATAAACACTTT+TGG + chr1_2:4763214-4763233 None:intergenic 25.0%
!!! TATTTTGACCATACTTTAGT+AGG + chr1_2:4763484-4763503 None:intergenic 25.0%
! ATGATTATGACATTCATATG+TGG + chr1_2:4764043-4764062 None:intergenic 25.0%
!! TATTTTATGGCACAAGTATT+TGG + chr1_2:4764082-4764101 None:intergenic 25.0%
! AAAAAAACTAACCTAGAGAA+TGG + chr1_2:4764122-4764141 None:intergenic 25.0%
!!! TTGCCATTTTTATATATGCA+TGG - chr1_2:4764208-4764227 Msa0050760:intron 25.0%
! AGGCTAATAATAACATTGAA+AGG + chr1_2:4764262-4764281 None:intergenic 25.0%
! AAATTACTAAGTTAGTGTCA+CGG + chr1_2:4764291-4764310 None:intergenic 25.0%
! CAAAACAAATAAGCACATAA+AGG + chr1_2:4764423-4764442 None:intergenic 25.0%
!! CTTTATGTGCTTATTTGTTT+TGG - chr1_2:4764421-4764440 Msa0050760:intron 25.0%
! TAATTAGGTTTTTAACACCG+TGG + chr1_2:4763452-4763471 None:intergenic 30.0%
AGTAGGAAACCACTATAATT+AGG + chr1_2:4763467-4763486 None:intergenic 30.0%
TAATTTAACCGTCAAACCTA+TGG - chr1_2:4763502-4763521 Msa0050760:intron 30.0%
!! CACAGTTGGCAAATTTTAAT+TGG + chr1_2:4763917-4763936 None:intergenic 30.0%
!!! AGAATTTTTCAAGACACAGT+TGG + chr1_2:4763931-4763950 None:intergenic 30.0%
GGACCATGCATATATAAAAA+TGG + chr1_2:4764214-4764233 None:intergenic 30.0%
! TTTTTATATATGCATGGTCC+AGG - chr1_2:4764214-4764233 Msa0050760:intron 30.0%
AACAAATAAGCACATAAAGG+TGG + chr1_2:4764420-4764439 None:intergenic 30.0%
CATTGAATAATAGATTGTGG+TGG - chr1_2:4764554-4764573 Msa0050760:intron 30.0%
CTAGAATTGGAGCAATAAAA+CGG + chr1_2:4764608-4764627 None:intergenic 30.0%
! TGTAGTTTTTGTCAAAATCG+TGG - chr1_2:4764799-4764818 Msa0050760:intron 30.0%
GATCATAAGATGACATAACA+TGG + chr1_2:4764879-4764898 None:intergenic 30.0%
TCTTTCAAGAATAAGAAGGT+TGG + chr1_2:4765058-4765077 None:intergenic 30.0%
ACCTTCTTATTCTTGAAAGA+AGG - chr1_2:4765058-4765077 Msa0050760:intron 30.0%
ACCTTCTTTCAAGAATAAGA+AGG + chr1_2:4765062-4765081 None:intergenic 30.0%
CTTATTCTTGAAAGAAGGTA+AGG - chr1_2:4765063-4765082 Msa0050760:intron 30.0%
! GGCAATTATGTTGATGAAAA+TGG - chr1_2:4765351-4765370 Msa0050760:CDS 30.0%
ATAGTAATCAACCAGAAGAA+GGG + chr1_2:4765378-4765397 None:intergenic 30.0%
AATAGTAATCAACCAGAAGA+AGG + chr1_2:4765379-4765398 None:intergenic 30.0%
!! AGAGGAGATTAGTCTCATAA+CGG - chr1_2:4763386-4763405 Msa0050760:intron 35.0%
!! GATTAGTCTCATAACGGATT+TGG - chr1_2:4763392-4763411 Msa0050760:intron 35.0%
TATATTATATGGAGCCACCA+CGG - chr1_2:4763432-4763451 Msa0050760:intron 35.0%
AGTGGTTTCCTACTAAAGTA+TGG - chr1_2:4763473-4763492 Msa0050760:intron 35.0%
GCACTATTTGCCATAATTCA+AGG - chr1_2:4763852-4763871 Msa0050760:intron 35.0%
CTATTTGCCATAATTCAAGG+AGG - chr1_2:4763855-4763874 Msa0050760:intron 35.0%
TTAGGAATCTCAGCTAGAAT+TGG + chr1_2:4764621-4764640 None:intergenic 35.0%
GGTGGATATTGATGAAGTAA+AGG - chr1_2:4764668-4764687 Msa0050760:intron 35.0%
!! AACTAGTCTTAAAGCCGATT+CGG - chr1_2:4764989-4765008 Msa0050760:intron 35.0%
AAATGCAATCACCAAGCATA+AGG - chr1_2:4765126-4765145 Msa0050760:intron 35.0%
GAAAAGATGAAAACCGACAA+AGG + chr1_2:4765212-4765231 None:intergenic 35.0%
AGTCACTACTCAATTGAAGT+AGG + chr1_2:4765265-4765284 None:intergenic 35.0%
AATTGCCAACCATCAACAAA+GGG + chr1_2:4765338-4765357 None:intergenic 35.0%
TAATTGCCAACCATCAACAA+AGG + chr1_2:4765339-4765358 None:intergenic 35.0%
AGAGAAAAAATGGCAGCTGA+AGG - chr1_2:4762996-4763015 Msa0050760:three_prime_UTR 40.0%
!!! TTTTGGAGTCATTTCCCTTC+TGG + chr1_2:4763067-4763086 None:intergenic 40.0%
GGGAAATGACTCCAAAAAAC+TGG - chr1_2:4763070-4763089 Msa0050760:three_prime_UTR 40.0%
AATATTGCCCTAGATCATCG+TGG - chr1_2:4763250-4763269 Msa0050760:CDS 40.0%
TTAGACCGCAACTTAAAGCT+CGG + chr1_2:4763345-4763364 None:intergenic 40.0%
! TTAGGTTTTTAACACCGTGG+TGG + chr1_2:4763449-4763468 None:intergenic 40.0%
GGCAAATAGTGCATTGTGAT+TGG + chr1_2:4763844-4763863 None:intergenic 40.0%
TGTGGCTGAAAAATAGGAAG+TGG - chr1_2:4763878-4763897 Msa0050760:intron 40.0%
!! AAACAAGGGTACCATTCTCT+AGG - chr1_2:4764108-4764127 Msa0050760:intron 40.0%
!! AGTTAGTGTCACGGTTTTAG+AGG + chr1_2:4764282-4764301 None:intergenic 40.0%
!!! TGGTGGATTTTACTGCTTCA+TGG - chr1_2:4764571-4764590 Msa0050760:intron 40.0%
! GATTTTACTGCTTCATGGTG+TGG - chr1_2:4764576-4764595 Msa0050760:intron 40.0%
ATTGGAGCAATAAAACGGCA+TGG + chr1_2:4764603-4764622 None:intergenic 40.0%
ATGACTTCAGGAGTCTTCTT+AGG + chr1_2:4764639-4764658 None:intergenic 40.0%
CTTCATCAATATCCACCTTG+AGG + chr1_2:4764665-4764684 None:intergenic 40.0%
CTTGAAAGAAGGTAAGGAAG+TGG - chr1_2:4765069-4765088 Msa0050760:intron 40.0%
AGAAGGTAAGGAAGTGGATA+AGG - chr1_2:4765075-4765094 Msa0050760:intron 40.0%
AAGGAAGTGGATAAGGTAGT+TGG - chr1_2:4765082-4765101 Msa0050760:intron 40.0%
AACAGTTGCATCCTTATGCT+TGG + chr1_2:4765140-4765159 None:intergenic 40.0%
ATGAAAATGGTCCCTTCTTC+TGG - chr1_2:4765364-4765383 Msa0050760:CDS 40.0%
AAAAATGGCAGCTGAAGGAC+AGG - chr1_2:4763001-4763020 Msa0050760:three_prime_UTR 45.0%
GTGTTCATACCGTTGAACAG+TGG - chr1_2:4763030-4763049 Msa0050760:three_prime_UTR 45.0%
TCATACCGTTGAACAGTGGA+AGG - chr1_2:4763034-4763053 Msa0050760:three_prime_UTR 45.0%
ACACTGTCCACGATGATCTA+GGG + chr1_2:4763260-4763279 None:intergenic 45.0%
AACACTGTCCACGATGATCT+AGG + chr1_2:4763261-4763280 None:intergenic 45.0%
!! ATCACCCGAGCTTTAAGTTG+CGG - chr1_2:4763337-4763356 Msa0050760:CDS 45.0%
TAGACCGCAACTTAAAGCTC+GGG + chr1_2:4763344-4763363 None:intergenic 45.0%
TAATCTCCTCTCGTGTGCTT+AGG + chr1_2:4763377-4763396 None:intergenic 45.0%
CTTGTGCACCATAGGTTTGA+CGG + chr1_2:4763513-4763532 None:intergenic 45.0%
TTGTCTCACTTGTGCACCAT+AGG + chr1_2:4763521-4763540 None:intergenic 45.0%
TGCCATAATTCAAGGAGGTG+TGG - chr1_2:4763860-4763879 Msa0050760:intron 45.0%
AGCCACACCTCCTTGAATTA+TGG + chr1_2:4763865-4763884 None:intergenic 45.0%
! AGGAGGTGTGGCTGAAAAAT+AGG - chr1_2:4763872-4763891 Msa0050760:intron 45.0%
TAACGCAAGTTCGTTCATCC+TGG + chr1_2:4764235-4764254 None:intergenic 45.0%
TCCTGAAGTCATCTTCCTCA+AGG - chr1_2:4764647-4764666 Msa0050760:intron 45.0%
ACCTTGAGGAAGATGACTTC+AGG + chr1_2:4764651-4764670 None:intergenic 45.0%
TGAAGTCATCTTCCTCAAGG+TGG - chr1_2:4764650-4764669 Msa0050760:intron 45.0%
!! CACTCTGAAATAGGCCGAAT+CGG + chr1_2:4765006-4765025 None:intergenic 45.0%
!! CCTCAGCAACACTCTGAAAT+AGG + chr1_2:4765015-4765034 None:intergenic 45.0%
!! CCTATTTCAGAGTGTTGCTG+AGG - chr1_2:4765012-4765031 Msa0050760:intron 45.0%
!! TTCAGAGTGTTGCTGAGGAA+TGG - chr1_2:4765017-4765036 Msa0050760:intron 45.0%
! TGGATAAGGTAGTTGGTGCT+AGG - chr1_2:4765089-4765108 Msa0050760:intron 45.0%
!! TAAGGTAGTTGGTGCTAGGA+AGG - chr1_2:4765093-4765112 Msa0050760:intron 45.0%
TGACATGGTCCCTTTGTTGA+TGG - chr1_2:4765326-4765345 Msa0050760:CDS 45.0%
!! ATGGTCCCTTTGTTGATGGT+TGG - chr1_2:4765330-4765349 Msa0050760:CDS 45.0%
TACCGTTGAACAGTGGAAGG+AGG - chr1_2:4763037-4763056 Msa0050760:three_prime_UTR 50.0%
CTCCTCCTTCCACTGTTCAA+CGG + chr1_2:4763042-4763061 None:intergenic 50.0%
TGGAAGGAGGAGATCCAGAA+GGG - chr1_2:4763050-4763069 Msa0050760:three_prime_UTR 50.0%
TCCTCTCGTGTGCTTAGGTT+CGG + chr1_2:4763372-4763391 None:intergenic 50.0%
TGCTGAGGAATGGTCTGTTG+AGG - chr1_2:4765027-4765046 Msa0050760:intron 50.0%
GCAGCTGAAGGACAGGTGAT+CGG - chr1_2:4763008-4763027 Msa0050760:three_prime_UTR 55.0%
GTGGAAGGAGGAGATCCAGA+AGG - chr1_2:4763049-4763068 Msa0050760:three_prime_UTR 55.0%
TCCGAACCTAAGCACACGAG+AGG - chr1_2:4763368-4763387 Msa0050760:intron 55.0%
! TGGTGCTAGGAAGGAAGAGC+TGG - chr1_2:4765102-4765121 Msa0050760:intron 55.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 4762941 4765447 4762941 ID=Msa0050760;Name=Msa0050760
chr1_2 mRNA 4762941 4765447 4762941 ID=Msa0050760-mRNA-1;Parent=Msa0050760;Name=Msa0050760-mRNA-1;_AED=0.03;_eAED=0.03;_QI=64|1|1|1|1|1|3|276|119
chr1_2 exon 4762941 4763366 4762941 ID=Msa0050760-mRNA-1:exon:1284;Parent=Msa0050760-mRNA-1
chr1_2 exon 4763699 4763821 4763699 ID=Msa0050760-mRNA-1:exon:1283;Parent=Msa0050760-mRNA-1
chr1_2 exon 4765297 4765447 4765297 ID=Msa0050760-mRNA-1:exon:1282;Parent=Msa0050760-mRNA-1
chr1_2 five_prime_UTR 4765384 4765447 4765384 ID=Msa0050760-mRNA-1:five_prime_utr;Parent=Msa0050760-mRNA-1
chr1_2 CDS 4765297 4765383 4765297 ID=Msa0050760-mRNA-1:cds;Parent=Msa0050760-mRNA-1
chr1_2 CDS 4763699 4763821 4763699 ID=Msa0050760-mRNA-1:cds;Parent=Msa0050760-mRNA-1
chr1_2 CDS 4763217 4763366 4763217 ID=Msa0050760-mRNA-1:cds;Parent=Msa0050760-mRNA-1
chr1_2 three_prime_UTR 4762941 4763216 4762941 ID=Msa0050760-mRNA-1:three_prime_utr;Parent=Msa0050760-mRNA-1
Gene Sequence

>Msa0050760

ATGGCAGCTGAAGGACAGGTGATCGGTGTTCATACCGTTGAACAGTGGAAGGAGGAGATCCAGAAGGGAAATGACTCCAAAAAACTGATTGTGGTGGATTTTACTGCTTCATGGTGTGGTCCATGCCGTTTTATTGCTCCAATTCTAGCTGAGATTCCTAAGAAGACTCCTGAAGTCATCTTCCTCAAGGTGGATATTGATGAAGTAAAGAGTGTTGCTGAGGAATGGTCTGTTGAGGCTATGCCAACCTTCTTATTCTTGAAAGAAGGTAAGGAAGTGGATAAGGTAGTTGGTGCTAGGAAGGAAGAGCTGGAAAATGCAATCACCAAGCATAAGGATGCAACTGTTGCTACTACTTGA

Protein sequence

>Msa0050760

MAAEGQVIGVHTVEQWKEEIQKGNDSKKLIVVDFTASWCGPCRFIAPILAEIPKKTPEVIFLKVDIDEVKSVAEEWSVEAMPTFLFLKEGKEVDKVVGARKEELENAITKHKDATVATT*