Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004060 | Msa0097990 | 0.807134 | 5.861975e-50 | -8.615850e-47 |
| Msa0004860 | Msa0097990 | 0.808023 | 3.797230e-50 | -8.615850e-47 |
| Msa0004920 | Msa0097990 | 0.803706 | 3.067475e-49 | -8.615850e-47 |
| Msa0008410 | Msa0097990 | 0.828881 | 7.024116e-55 | -8.615850e-47 |
| Msa0010020 | Msa0097990 | 0.800422 | 1.452032e-48 | -8.615850e-47 |
| Msa0032260 | Msa0097990 | 0.821566 | 3.772235e-53 | -8.615850e-47 |
| Msa0043170 | Msa0097990 | 0.822984 | 1.767591e-53 | -8.615850e-47 |
| Msa0044020 | Msa0097990 | 0.815138 | 1.077659e-51 | -8.615850e-47 |
| Msa0048000 | Msa0097990 | 0.812939 | 3.293461e-51 | -8.615850e-47 |
| Msa0049400 | Msa0097990 | -0.810144 | 1.333603e-50 | -8.615850e-47 |
| Msa0050760 | Msa0097990 | 0.806307 | 8.766288e-50 | -8.615850e-47 |
| Msa0051770 | Msa0097990 | 0.829595 | 4.713669e-55 | -8.615850e-47 |
| Msa0053900 | Msa0097990 | 0.807799 | 4.237159e-50 | -8.615850e-47 |
| Msa0055150 | Msa0097990 | 0.807940 | 3.953398e-50 | -8.615850e-47 |
| Msa0057140 | Msa0097990 | 0.820168 | 7.907802e-53 | -8.615850e-47 |
| Msa0069260 | Msa0097990 | 0.803149 | 4.000231e-49 | -8.615850e-47 |
| Msa0069310 | Msa0097990 | 0.827890 | 1.218466e-54 | -8.615850e-47 |
| Msa0076000 | Msa0097990 | 0.806041 | 9.973697e-50 | -8.615850e-47 |
| Msa0081230 | Msa0097990 | 0.813269 | 2.787831e-51 | -8.615850e-47 |
| Msa0090030 | Msa0097990 | 0.805677 | 1.189251e-49 | -8.615850e-47 |
| Msa0094920 | Msa0097990 | 0.826839 | 2.176964e-54 | -8.615850e-47 |
| Msa0097990 | Msa0099510 | 0.818985 | 1.472402e-52 | -8.615850e-47 |
| Msa0097990 | Msa0102400 | 0.809777 | 1.600301e-50 | -8.615850e-47 |
| Msa0097990 | Msa0104610 | 0.805405 | 1.356257e-49 | -8.615850e-47 |
| Msa0097990 | Msa0127310 | 0.826242 | 3.019804e-54 | -8.615850e-47 |
| Msa0097990 | Msa0137040 | 0.807618 | 4.629050e-50 | -8.615850e-47 |
| Msa0097990 | Msa0141340 | 0.813856 | 2.071418e-51 | -8.615850e-47 |
| Msa0097990 | Msa0148120 | 0.833595 | 4.872539e-56 | -8.615850e-47 |
| Msa0097990 | Msa0148340 | 0.810579 | 1.074711e-50 | -8.615850e-47 |
| Msa0097990 | Msa0148360 | 0.805928 | 1.053191e-49 | -8.615850e-47 |
| Msa0097990 | Msa0154770 | 0.806353 | 8.572776e-50 | -8.615850e-47 |
| Msa0097990 | Msa0162770 | -0.816701 | 4.828048e-52 | -8.615850e-47 |
| Msa0097990 | Msa0172350 | 0.810197 | 1.299045e-50 | -8.615850e-47 |
| Msa0097990 | Msa0180790 | -0.814513 | 1.482519e-51 | -8.615850e-47 |
| Msa0097990 | Msa0185590 | 0.813301 | 2.742888e-51 | -8.615850e-47 |
| Msa0097990 | Msa0188680 | -0.815634 | 8.359207e-52 | -8.615850e-47 |
| Msa0097990 | Msa0191050 | 0.814060 | 1.867127e-51 | -8.615850e-47 |
| Msa0097990 | Msa0208810 | 0.806117 | 9.613358e-50 | -8.615850e-47 |
| Msa0097990 | Msa0211860 | 0.827437 | 1.565362e-54 | -8.615850e-47 |
| Msa0097990 | Msa0216240 | 0.805286 | 1.436299e-49 | -8.615850e-47 |
| Msa0097990 | Msa0223290 | 0.801401 | 9.161298e-49 | -8.615850e-47 |
| Msa0097990 | Msa0226470 | 0.809653 | 1.701071e-50 | -8.615850e-47 |
| Msa0097990 | Msa0227400 | 0.849618 | 2.881495e-60 | -8.615850e-47 |
| Msa0097990 | Msa0229490 | -0.826074 | 3.311622e-54 | -8.615850e-47 |
| Msa0097990 | Msa0233350 | 0.823684 | 1.213451e-53 | -8.615850e-47 |
| Msa0097990 | Msa0236440 | 0.823474 | 1.358734e-53 | -8.615850e-47 |
| Msa0097990 | Msa0239450 | 0.818086 | 2.355333e-52 | -8.615850e-47 |
| Msa0097990 | Msa0239940 | 0.809515 | 1.821777e-50 | -8.615850e-47 |
| Msa0097990 | Msa0259560 | 0.807357 | 5.257900e-50 | -8.615850e-47 |
| Msa0097990 | Msa0260210 | 0.822543 | 2.239958e-53 | -8.615850e-47 |
| Msa0097990 | Msa0260810 | 0.814705 | 1.344690e-51 | -8.615850e-47 |
| Msa0097990 | Msa0264930 | 0.825924 | 3.594628e-54 | -8.615850e-47 |
| Msa0097990 | Msa0270220 | -0.818599 | 1.801978e-52 | -8.615850e-47 |
| Msa0097990 | Msa0271040 | 0.803344 | 3.646396e-49 | -8.615850e-47 |
| Msa0097990 | Msa0275400 | -0.833807 | 4.313172e-56 | -8.615850e-47 |
| Msa0097990 | Msa0302980 | 0.809798 | 1.583222e-50 | -8.615850e-47 |
| Msa0097990 | Msa0304290 | 0.830896 | 2.267645e-55 | -8.615850e-47 |
| Msa0097990 | Msa0304330 | 0.836555 | 8.736162e-57 | -8.615850e-47 |
| Msa0097990 | Msa0305890 | 0.811587 | 6.499622e-51 | -8.615850e-47 |
| Msa0097990 | Msa0307830 | -0.810711 | 1.006170e-50 | -8.615850e-47 |
| Msa0097990 | Msa0308220 | 0.801051 | 1.080447e-48 | -8.615850e-47 |
| Msa0097990 | Msa0309350 | 0.810398 | 1.175858e-50 | -8.615850e-47 |
| Msa0097990 | Msa0311860 | 0.831569 | 1.549675e-55 | -8.615850e-47 |
| Msa0097990 | Msa0333330 | -0.802052 | 6.734937e-49 | -8.615850e-47 |
| Msa0097990 | Msa0333720 | -0.806297 | 8.809416e-50 | -8.615850e-47 |
| Msa0097990 | Msa0340810 | 0.811066 | 8.429174e-51 | -8.615850e-47 |
| Msa0097990 | Msa0347360 | 0.802690 | 4.978255e-49 | -8.615850e-47 |
| Msa0097990 | Msa0355270 | 0.801596 | 8.355030e-49 | -8.615850e-47 |
| Msa0097990 | Msa0369440 | 0.810909 | 9.119321e-51 | -8.615850e-47 |
| Msa0097990 | Msa0372660 | 0.807239 | 5.569875e-50 | -8.615850e-47 |
| Msa0097990 | Msa0372670 | 0.818519 | 1.878754e-52 | -8.615850e-47 |
| Msa0097990 | Msa0375090 | 0.802292 | 6.012517e-49 | -8.615850e-47 |
| Msa0097990 | Msa0393710 | 0.800232 | 1.587237e-48 | -8.615850e-47 |
| Msa0097990 | Msa0415810 | 0.810182 | 1.308692e-50 | -8.615850e-47 |
| Msa0097990 | Msa0419520 | 0.803483 | 3.411662e-49 | -8.615850e-47 |
| Msa0097990 | Msa0423360 | -0.812365 | 4.398415e-51 | -8.615850e-47 |
| Msa0097990 | Msa0436280 | -0.801047 | 1.082370e-48 | -8.615850e-47 |
| Msa0097990 | Msa0460930 | 0.812599 | 3.909643e-51 | -8.615850e-47 |
| Msa0097990 | Msa0464900 | 0.824869 | 6.389695e-54 | -8.615850e-47 |
| Msa0097990 | Msa0465550 | 0.815588 | 8.561378e-52 | -8.615850e-47 |
| Msa0097990 | Msa0469910 | -0.800735 | 1.253628e-48 | -8.615850e-47 |
| Msa0097990 | Msa0505770 | 0.805405 | 1.356417e-49 | -8.615850e-47 |
| Msa0097990 | Msa0534590 | 0.822561 | 2.217330e-53 | -8.615850e-47 |
| Msa0097990 | Msa0535030 | 0.800767 | 1.234941e-48 | -8.615850e-47 |
| Msa0097990 | Msa0535060 | 0.803574 | 3.267206e-49 | -8.615850e-47 |
| Msa0097990 | Msa0547400 | 0.808403 | 3.151265e-50 | -8.615850e-47 |
| Msa0097990 | Msa0556790 | 0.810133 | 1.341125e-50 | -8.615850e-47 |
| Msa0097990 | Msa0558810 | 0.807300 | 5.406192e-50 | -8.615850e-47 |
| Msa0097990 | Msa0558840 | 0.821474 | 3.960001e-53 | -8.615850e-47 |
| Msa0097990 | Msa0568820 | 0.828431 | 9.023946e-55 | -8.615850e-47 |
| Msa0097990 | Msa0575990 | -0.806532 | 7.857581e-50 | -8.615850e-47 |
| Msa0097990 | Msa0576100 | -0.814769 | 1.301345e-51 | -8.615850e-47 |
| Msa0097990 | Msa0577220 | 0.829203 | 5.870097e-55 | -8.615850e-47 |
| Msa0097990 | Msa0590800 | 0.825513 | 4.500302e-54 | -8.615850e-47 |
| Msa0097990 | Msa0600600 | 0.826718 | 2.326506e-54 | -8.615850e-47 |
| Msa0097990 | Msa0603540 | 0.807429 | 5.075838e-50 | -8.615850e-47 |
| Msa0097990 | Msa0619070 | 0.831663 | 1.469215e-55 | -8.615850e-47 |
| Msa0097990 | Msa0631120 | 0.819900 | 9.108532e-53 | -8.615850e-47 |
| Msa0097990 | Msa0641140 | 0.813594 | 2.365201e-51 | -8.615850e-47 |
| Msa0097990 | Msa0641190 | 0.808337 | 3.255011e-50 | -8.615850e-47 |
| Msa0097990 | Msa0655660 | -0.812981 | 3.225100e-51 | -8.615850e-47 |
| Msa0097990 | Msa0669340 | 0.813394 | 2.616678e-51 | -8.615850e-47 |
| Msa0097990 | Msa0669850 | 0.806608 | 7.572586e-50 | -8.615850e-47 |
| Msa0097990 | Msa0682900 | 0.805577 | 1.247923e-49 | -8.615850e-47 |
| Msa0097990 | Msa0682950 | 0.802142 | 6.454942e-49 | -8.615850e-47 |
| Msa0097990 | Msa0684350 | 0.803561 | 3.287514e-49 | -8.615850e-47 |
| Msa0097990 | Msa0684500 | 0.813149 | 2.962289e-51 | -8.615850e-47 |
| Msa0097990 | Msa0694840 | 0.819506 | 1.120677e-52 | -8.615850e-47 |
| Msa0097990 | Msa0698060 | 0.810741 | 9.914322e-51 | -8.615850e-47 |
| Msa0097990 | Msa0708520 | 0.809140 | 2.191577e-50 | -8.615850e-47 |
| Msa0097990 | Msa0709500 | 0.829791 | 4.224702e-55 | -8.615850e-47 |
| Msa0097990 | Msa0720820 | 0.810384 | 1.183907e-50 | -8.615850e-47 |
| Msa0097990 | Msa0724830 | 0.808583 | 2.883832e-50 | -8.615850e-47 |
| Msa0097990 | Msa0731710 | 0.804663 | 1.938632e-49 | -8.615850e-47 |
| Msa0097990 | Msa0743260 | 0.800076 | 1.707675e-48 | -8.615850e-47 |
| Msa0097990 | Msa0750430 | 0.803366 | 3.608043e-49 | -8.615850e-47 |
| Msa0097990 | Msa0754720 | -0.827237 | 1.748438e-54 | -8.615850e-47 |
| Msa0097990 | Msa0756630 | -0.810527 | 1.102590e-50 | -8.615850e-47 |
| Msa0097990 | Msa0761940 | 0.810883 | 9.236541e-51 | -8.615850e-47 |
| Msa0097990 | Msa0765380 | 0.807560 | 4.761366e-50 | -8.615850e-47 |
| Msa0097990 | Msa0770200 | 0.830362 | 3.064754e-55 | -8.615850e-47 |
| Msa0097990 | Msa0787260 | 0.800801 | 1.215632e-48 | -8.615850e-47 |
| Msa0097990 | Msa0788710 | 0.809440 | 1.889936e-50 | -8.615850e-47 |
| Msa0097990 | Msa0790390 | -0.820507 | 6.612642e-53 | -8.615850e-47 |
| Msa0097990 | Msa0790850 | 0.832281 | 1.033975e-55 | -8.615850e-47 |
| Msa0097990 | Msa0791820 | 0.830897 | 2.266714e-55 | -8.615850e-47 |
| Msa0097990 | Msa0792790 | -0.806324 | 8.691776e-50 | -8.615850e-47 |
| Msa0097990 | Msa0841940 | 0.802957 | 4.383672e-49 | -8.615850e-47 |
| Msa0097990 | Msa0863370 | 0.803256 | 3.801275e-49 | -8.615850e-47 |
| Msa0097990 | Msa0874500 | 0.833308 | 5.745914e-56 | -8.615850e-47 |
| Msa0097990 | Msa0899230 | 0.809580 | 1.763965e-50 | -8.615850e-47 |
| Msa0097990 | Msa0908170 | 0.826690 | 2.361937e-54 | -8.615850e-47 |
| Msa0097990 | Msa0970030 | 0.837525 | 4.937503e-57 | -8.615850e-47 |
| Msa0097990 | Msa1013040 | 0.801044 | 1.084257e-48 | -8.615850e-47 |
| Msa0097990 | Msa1014420 | 0.820585 | 6.345226e-53 | -8.615850e-47 |
| Msa0097990 | Msa1033560 | 0.807504 | 4.894778e-50 | -8.615850e-47 |
| Msa0097990 | Msa1040400 | 0.817114 | 3.900634e-52 | -8.615850e-47 |
| Msa0097990 | Msa1040800 | 0.800812 | 1.209172e-48 | -8.615850e-47 |
| Msa0097990 | Msa1040890 | 0.851424 | 8.953920e-61 | -8.615850e-47 |
| Msa0097990 | Msa1041520 | 0.828652 | 7.983011e-55 | -8.615850e-47 |
| Msa0097990 | Msa1052390 | 0.800015 | 1.757407e-48 | -8.615850e-47 |
| Msa0097990 | Msa1058760 | 0.808126 | 3.609279e-50 | -8.615850e-47 |
| Msa0097990 | Msa1069660 | -0.801380 | 9.254274e-49 | -8.615850e-47 |
| Msa0097990 | Msa1079370 | -0.821414 | 4.089289e-53 | -8.615850e-47 |
| Msa0097990 | Msa1081560 | 0.849645 | 2.830898e-60 | -8.615850e-47 |
| Msa0097990 | Msa1083150 | 0.819528 | 1.107797e-52 | -8.615850e-47 |
| Msa0097990 | Msa1089840 | 0.829551 | 4.831074e-55 | -8.615850e-47 |
| Msa0097990 | Msa1091530 | 0.802275 | 6.059946e-49 | -8.615850e-47 |
| Msa0097990 | Msa1125470 | 0.807107 | 5.941451e-50 | -8.615850e-47 |
| Msa0097990 | Msa1125550 | 0.812513 | 4.081693e-51 | -8.615850e-47 |
| Msa0097990 | Msa1125760 | 0.815497 | 8.969809e-52 | -8.615850e-47 |
| Msa0097990 | Msa1127130 | 0.826710 | 2.336775e-54 | -8.615850e-47 |
| Msa0097990 | Msa1127890 | 0.838665 | 2.512169e-57 | -8.615850e-47 |
| Msa0097990 | Msa1130210 | -0.807571 | 4.735769e-50 | -8.615850e-47 |
| Msa0097990 | Msa1130670 | -0.803171 | 3.959634e-49 | -8.615850e-47 |
| Msa0097990 | Msa1145250 | -0.815348 | 9.678163e-52 | -8.615850e-47 |
| Msa0097990 | Msa1165870 | 0.844887 | 5.723100e-59 | -8.615850e-47 |
| Msa0097990 | Msa1166410 | 0.840900 | 6.579944e-58 | -8.615850e-47 |
| Msa0097990 | Msa1171360 | 0.828184 | 1.035359e-54 | -8.615850e-47 |
| Msa0097990 | Msa1187840 | 0.819600 | 1.066604e-52 | -8.615850e-47 |
| Msa0097990 | Msa1190890 | -0.819221 | 1.301220e-52 | -8.615850e-47 |
| Msa0097990 | Msa1202150 | 0.806054 | 9.911040e-50 | -8.615850e-47 |
| Msa0097990 | Msa1214890 | 0.815833 | 7.547663e-52 | -8.615850e-47 |
| Msa0097990 | Msa1217660 | 0.807919 | 3.994082e-50 | -8.615850e-47 |
| Msa0097990 | Msa1217860 | 0.810279 | 1.247299e-50 | -8.615850e-47 |
| Msa0097990 | Msa1217940 | 0.814575 | 1.437121e-51 | -8.615850e-47 |
| Msa0097990 | Msa1218600 | 0.832817 | 7.612024e-56 | -8.615850e-47 |
| Msa0097990 | Msa1227400 | 0.805801 | 1.120049e-49 | -8.615850e-47 |
| Msa0097990 | Msa1240180 | 0.815850 | 7.484466e-52 | -8.615850e-47 |
| Msa0097990 | Msa1240210 | 0.819498 | 1.125134e-52 | -8.615850e-47 |
| Msa0097990 | Msa1246530 | -0.806202 | 9.222409e-50 | -8.615850e-47 |
| Msa0097990 | Msa1249240 | 0.813292 | 2.755454e-51 | -8.615850e-47 |
| Msa0097990 | Msa1255040 | -0.811655 | 6.282042e-51 | -8.615850e-47 |
| Msa0097990 | Msa1258050 | 0.804219 | 2.399936e-49 | -8.615850e-47 |
| Msa0097990 | Msa1269300 | 0.831233 | 1.875017e-55 | -8.615850e-47 |
| Msa0097990 | Msa1269580 | -0.810791 | 9.671831e-51 | -8.615850e-47 |
| Msa0097990 | Msa1283170 | 0.813437 | 2.561221e-51 | -8.615850e-47 |
| Msa0097990 | Msa1295110 | 0.801474 | 8.851498e-49 | -8.615850e-47 |
| Msa0097990 | Msa1295490 | -0.816888 | 4.384868e-52 | -8.615850e-47 |
| Msa0097990 | Msa1300860 | 0.817935 | 2.546814e-52 | -8.615850e-47 |
| Msa0097990 | Msa1316830 | 0.801822 | 7.511726e-49 | -8.615850e-47 |
| Msa0097990 | Msa1320620 | 0.810967 | 8.858098e-51 | -8.615850e-47 |
| Msa0097990 | Msa1328220 | 0.809053 | 2.287911e-50 | -8.615850e-47 |
| Msa0097990 | Msa1331910 | 0.844369 | 7.890373e-59 | -8.615850e-47 |
| Msa0097990 | Msa1331920 | 0.834948 | 2.230511e-56 | -8.615850e-47 |
| Msa0097990 | Msa1332870 | -0.810748 | 9.880344e-51 | -8.615850e-47 |
| Msa0097990 | Msa1356440 | 0.835404 | 1.711773e-56 | -8.615850e-47 |
| Msa0097990 | Msa1359390 | 0.800611 | 1.328844e-48 | -8.615850e-47 |
| Msa0097990 | Msa1371090 | 0.822078 | 2.871571e-53 | -8.615850e-47 |
| Msa0097990 | Msa1385670 | 0.843758 | 1.150968e-58 | -8.615850e-47 |
| Msa0097990 | Msa1386230 | 0.808608 | 2.849108e-50 | -8.615850e-47 |
| Msa0097990 | Msa1390310 | 0.818031 | 2.423078e-52 | -8.615850e-47 |
| Msa0097990 | Msa1395870 | 0.807048 | 6.112650e-50 | -8.615850e-47 |
| Msa0097990 | Msa1397340 | 0.804408 | 2.191866e-49 | -8.615850e-47 |
| Msa0097990 | Msa1403580 | -0.818883 | 1.553870e-52 | -8.615850e-47 |
| Msa0097990 | Msa1403930 | -0.822467 | 2.332398e-53 | -8.615850e-47 |
| Msa0097990 | Msa1404540 | 0.819185 | 1.326375e-52 | -8.615850e-47 |
| Msa0097990 | Msa1416390 | 0.806260 | 8.966894e-50 | -8.615850e-47 |
| Msa0097990 | Msa1425010 | 0.808047 | 3.751679e-50 | -8.615850e-47 |
| Msa0097990 | Msa1431060 | 0.824883 | 6.341787e-54 | -8.615850e-47 |
| Msa0097990 | Msa1439960 | 0.820287 | 7.428984e-53 | -8.615850e-47 |
| Msa0097990 | Msa1440000 | 0.803819 | 2.906191e-49 | -8.615850e-47 |
| Msa0097990 | Msa1440600 | 0.804149 | 2.480777e-49 | -8.615850e-47 |
| Msa0097990 | Msa1442220 | -0.823278 | 1.509586e-53 | -8.615850e-47 |
| Msa0097990 | Msa1443290 | -0.810175 | 1.313746e-50 | -8.615850e-47 |
| Msa0097990 | Msa1444310 | 0.813912 | 2.013178e-51 | -8.615850e-47 |
| Msa0097990 | Msa1452480 | 0.802891 | 4.523385e-49 | -8.615850e-47 |
| Msa0097990 | Msa1461280 | 0.827513 | 1.500649e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 75 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCTATATGTGAAGAAATT+AGG | 0.140891 | 1_3:+3883618 | Msa0097980:intron |
| GTTAAATAATAACCGTTTAA+TGG | 0.179677 | 1_3:-3885716 | Msa0097990:five_prime_UTR |
| CCATTTGTTTGTTGAAATCT+TGG | 0.225064 | 1_3:-3885579 | Msa0097990:five_prime_UTR |
| GAACACACAGATAATGAAAA+AGG | 0.229430 | 1_3:+3883823 | Msa0097980:intron |
| CCTACATCACAAGAAATAAT+TGG | 0.264657 | 1_3:+3883514 | Msa0097980:CDS |
| CAATGTCTGCGAACTTGATT+TGG | 0.278261 | 1_3:-3885543 | Msa0097990:five_prime_UTR |
| CAGAATCCTAATTGGCAAAA+TGG | 0.286029 | 1_3:+3883433 | Msa0097980:CDS |
| TTAAATAATAACCGTTTAAT+GGG | 0.303053 | 1_3:-3885715 | Msa0097990:five_prime_UTR |
| CAATTATATGGAACTCAATA+TGG | 0.313814 | 1_3:+3883313 | Msa0097980:CDS |
| TTCTATATGTGAAGAAATTA+GGG | 0.352386 | 1_3:+3883619 | Msa0097980:intron |
| CGTGGACCCAGAATCCTAAT+TGG | 0.355576 | 1_3:+3883425 | Msa0097980:CDS |
| GAATGAATTCATCAAGTATA+AGG | 0.361705 | 1_3:+3884347 | None:intergenic |
| GTTGTAGACATTCAGAAAGT+TGG | 0.365354 | 1_3:-3883859 | Msa0097990:three_prime_UTR |
| CCAATTATTTCTTGTGATGT+AGG | 0.376828 | 1_3:-3883514 | Msa0097990:three_prime_UTR |
| TTGTAGACATTCAGAAAGTT+GGG | 0.378542 | 1_3:-3883858 | Msa0097990:three_prime_UTR |
| GGGTATGAGGAAAGATGATT+TGG | 0.386388 | 1_3:-3883492 | Msa0097990:three_prime_UTR |
| AACAAATGTTACCCATTAAA+CGG | 0.387866 | 1_3:+3885704 | None:intergenic |
| TCTTGCCCATTTGTCTTGGA+TGG | 0.392860 | 1_3:-3883584 | Msa0097990:three_prime_UTR |
| TCTTGTGATGTAGGGGTATG+AGG | 0.395732 | 1_3:-3883505 | Msa0097990:three_prime_UTR |
| TCCAACGATTGAAGTAATCT+TGG | 0.396123 | 1_3:-3883539 | Msa0097990:three_prime_UTR |
| TGATGATTTACTATTGCAAT+TGG | 0.398465 | 1_3:-3883987 | Msa0097990:CDS |
| AAATTACTGTTCACAGATGA+TGG | 0.416554 | 1_3:+3885846 | None:intergenic |
| CTTGCCCATTTGTCTTGGAT+GGG | 0.417595 | 1_3:-3883583 | Msa0097990:three_prime_UTR |
| CAATTATTTCTTGTGATGTA+GGG | 0.418076 | 1_3:-3883513 | Msa0097990:three_prime_UTR |
| CAGGCTATCATTGAAAGAAT+GGG | 0.419258 | 1_3:-3884069 | Msa0097990:five_prime_UTR |
| GGTATGAGGAAAGATGATTT+GGG | 0.428294 | 1_3:-3883491 | Msa0097990:three_prime_UTR |
| GCAGGCTATCATTGAAAGAA+TGG | 0.433845 | 1_3:-3884070 | Msa0097990:intron |
| GAAGCTGTAGTTCTATATAT+TGG | 0.435208 | 1_3:-3885758 | Msa0097990:five_prime_UTR |
| ATCTTATTACACCAGTACTT+TGG | 0.438490 | 1_3:-3883649 | Msa0097990:three_prime_UTR |
| ATTATACAGTTCTATATCTC+TGG | 0.448782 | 1_3:+3883758 | Msa0097980:intron |
| CCAAGATTTCAACAAACAAA+TGG | 0.450421 | 1_3:+3885579 | None:intergenic |
| TTGCCCATTTGTCTTGGATG+GGG | 0.457853 | 1_3:-3883582 | Msa0097990:three_prime_UTR |
| GTAATATACCGGAGATATGC+TGG | 0.461155 | 1_3:-3885662 | Msa0097990:five_prime_UTR |
| AAGATCTTGCCCATTTGTCT+TGG | 0.472158 | 1_3:-3883588 | Msa0097990:three_prime_UTR |
| TGTATCACTCATTGTGAGAC+GGG | 0.493371 | 1_3:+3883726 | Msa0097980:intron |
| AGAAATGACTATTCTGCAAT+GGG | 0.495928 | 1_3:+3883457 | Msa0097980:CDS |
| TCCAAGATTACTTCAATCGT+TGG | 0.497011 | 1_3:+3883538 | Msa0097980:intron |
| ATGTATTATGTACACTTCCA+TGG | 0.500745 | 1_3:-3883905 | Msa0097990:CDS |
| AGGGACAGATTCCAAAGTAC+TGG | 0.510784 | 1_3:+3883638 | Msa0097980:intron |
| CTTGATGAATTCATTCTAGC+GGG | 0.516282 | 1_3:-3884340 | Msa0097990:five_prime_UTR |
| AAGAAATGACTATTCTGCAA+TGG | 0.540060 | 1_3:+3883456 | Msa0097980:CDS |
| AAAACAGTCCAGCATATCTC+CGG | 0.546650 | 1_3:+3885654 | None:intergenic |
| TGCCCATTTGTCTTGGATGG+GGG | 0.548139 | 1_3:-3883581 | Msa0097990:three_prime_UTR |
| CATTTCAGCAGAGTCACGAC+AGG | 0.554284 | 1_3:-3884017 | Msa0097990:five_prime_UTR |
| GTATGAGGAAAGATGATTTG+GGG | 0.565026 | 1_3:-3883490 | Msa0097990:three_prime_UTR |
| CATGAGGAAGCAAAAGAGAT+GGG | 0.565553 | 1_3:+3885879 | None:intergenic |
| ACATGAGGAAGCAAAAGAGA+TGG | 0.565607 | 1_3:+3885878 | None:intergenic |
| TGTACATAATACATGGCTCA+AGG | 0.566144 | 1_3:+3883914 | Msa0097980:intron |
| AATTATTTCTTGTGATGTAG+GGG | 0.566909 | 1_3:-3883512 | Msa0097990:three_prime_UTR |
| TGCAACAAGCAGCTCAAGCT+AGG | 0.574393 | 1_3:+3883380 | Msa0097980:CDS |
| CATAATACATGGCTCAAGGG+TGG | 0.577888 | 1_3:+3883918 | Msa0097980:intron |
| AATTACTGTTCACAGATGAT+GGG | 0.586941 | 1_3:+3885847 | None:intergenic |
| CTGTAAATTGCAATATTACG+TGG | 0.599616 | 1_3:+3883407 | Msa0097980:CDS |
| ACACGAGATTTAAGAAACCA+TGG | 0.601898 | 1_3:+3883888 | Msa0097980:intron |
| ACTTGATGAATTCATTCTAG+CGG | 0.603094 | 1_3:-3884341 | Msa0097990:five_prime_UTR |
| TATGAGGAAAGATGATTTGG+GGG | 0.607071 | 1_3:-3883489 | Msa0097990:three_prime_UTR |
| TGTAGACATTCAGAAAGTTG+GGG | 0.610223 | 1_3:-3883857 | Msa0097990:three_prime_UTR |
| ATAATACATGGCTCAAGGGT+GGG | 0.610710 | 1_3:+3883919 | Msa0097980:intron |
| GTACATAATACATGGCTCAA+GGG | 0.615332 | 1_3:+3883915 | Msa0097980:intron |
| GTACACACAAGGTAATATAC+CGG | 0.616996 | 1_3:-3885673 | Msa0097990:five_prime_UTR |
| GTGTATCACTCATTGTGAGA+CGG | 0.617358 | 1_3:+3883725 | Msa0097980:intron |
| TGATGGGAAAATCAAACATG+AGG | 0.628305 | 1_3:+3885863 | None:intergenic |
| ATGGAAGTGTACATAATACA+TGG | 0.629812 | 1_3:+3883907 | Msa0097980:intron |
| CTAACTACAAAGAAGCACAA+TGG | 0.630559 | 1_3:+3883788 | Msa0097980:intron |
| ACTGCAAGAAACAAGCAAGA+AGG | 0.630829 | 1_3:-3884314 | Msa0097990:intron |
| GTTGCAGTTTCGTACACACA+AGG | 0.632236 | 1_3:-3885684 | Msa0097990:five_prime_UTR |
| AGGCTATCATTGAAAGAATG+GGG | 0.635618 | 1_3:-3884068 | Msa0097990:five_prime_UTR |
| TGTGAACAGTAATTTATCTG+TGG | 0.644992 | 1_3:-3885838 | Msa0097990:five_prime_UTR |
| TGACATCACTGATAATGAGT+TGG | 0.649266 | 1_3:-3885618 | Msa0097990:five_prime_UTR |
| GGCTATCATTGAAAGAATGG+GGG | 0.667109 | 1_3:-3884067 | Msa0097990:five_prime_UTR |
| GTATCACTCATTGTGAGACG+GGG | 0.677728 | 1_3:+3883727 | Msa0097980:intron |
| ATTTCAGCAGAGTCACGACA+GGG | 0.688002 | 1_3:-3884016 | Msa0097990:five_prime_UTR |
| GATGCACGGTTACTAAACAA+CGG | 0.691729 | 1_3:+3885912 | None:intergenic |
| TATCACTCATTGTGAGACGG+GGG | 0.725206 | 1_3:+3883728 | Msa0097980:intron |
| ATGAGGAAAGATGATTTGGG+GGG | 0.787407 | 1_3:-3883488 | Msa0097990:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATAATAACCGTTTAAT+GGG | - | chr1_3:3883517-3883536 | Msa0097990:three_prime_UTR | 15.0% |
| !! | TTTATGATACAAAATAATAG+TGG | - | chr1_3:3883944-3883963 | Msa0097990:CDS | 15.0% |
| !!! | AAATAATAGTGGAATATAAA+AGG | - | chr1_3:3883955-3883974 | Msa0097990:CDS | 15.0% |
| !!! | AATAATAGTGGAATATAAAA+GGG | - | chr1_3:3883956-3883975 | Msa0097990:CDS | 15.0% |
| !! | GTTAAATAATAACCGTTTAA+TGG | - | chr1_3:3883516-3883535 | Msa0097990:three_prime_UTR | 20.0% |
| !!! | TTTTTTAGAACTAAAACATG+TGG | + | chr1_3:3884182-3884201 | Msa0097980:intron | 20.0% |
| !!! | AAGGACATTTTTCATATATA+TGG | + | chr1_3:3884381-3884400 | None:intergenic | 20.0% |
| !!! | TTTAGTTTTATCTGATTTGA+AGG | - | chr1_3:3884858-3884877 | Msa0097990:intron | 20.0% |
| !! | TTCTATATGTGAAGAAATTA+GGG | + | chr1_3:3885616-3885635 | None:intergenic | 20.0% |
| !! | ATTCTATATGTGAAGAAATT+AGG | + | chr1_3:3885617-3885636 | None:intergenic | 20.0% |
| ! | AACAAATGTTACCCATTAAA+CGG | + | chr1_3:3883531-3883550 | Msa0097980:CDS | 25.0% |
| ! | CATGATTACTGAAAAACAAA+AGG | + | chr1_3:3883754-3883773 | Msa0097980:intron | 25.0% |
| !!! | TTGTTTTTCAGTAATCATGT+AGG | - | chr1_3:3883755-3883774 | Msa0097990:three_prime_UTR | 25.0% |
| !!! | TGTTTTTCAGTAATCATGTA+GGG | - | chr1_3:3883756-3883775 | Msa0097990:three_prime_UTR | 25.0% |
| ! | TGCTTAGATATTCAAAACAT+TGG | - | chr1_3:3883795-3883814 | Msa0097990:three_prime_UTR | 25.0% |
| ! | GTTATCTATCTTTGTATTGT+TGG | - | chr1_3:3883830-3883849 | Msa0097990:three_prime_UTR | 25.0% |
| !!! | TGGTAATGCTATAATGATTT+TGG | - | chr1_3:3883850-3883869 | Msa0097990:three_prime_UTR | 25.0% |
| !! | GGTAATGCTATAATGATTTT+GGG | - | chr1_3:3883851-3883870 | Msa0097990:three_prime_UTR | 25.0% |
| ! | ATTTATAGAAAACGATGTCT+CGG | - | chr1_3:3883902-3883921 | Msa0097990:CDS | 25.0% |
| ! | TTTAGATCAAAGTGGAAAAT+GGG | + | chr1_3:3884218-3884237 | Msa0097980:intron | 25.0% |
| ! | GCAATTGCAAATTATTTACT+AGG | + | chr1_3:3884346-3884365 | None:intergenic | 25.0% |
| ! | AAAAATTTGTACACACAACA+AGG | + | chr1_3:3884436-3884455 | None:intergenic | 25.0% |
| !!! | TCACTTCTTTCATTTGTTTT+TGG | - | chr1_3:3884585-3884604 | Msa0097990:intron | 25.0% |
| ! | GTATGTTAAATTAGACACAA+TGG | + | chr1_3:3884667-3884686 | None:intergenic | 25.0% |
| ! | GAATGAATTCATCAAGTATA+AGG | + | chr1_3:3884888-3884907 | None:intergenic | 25.0% |
| ! | TGATGATTTACTATTGCAAT+TGG | - | chr1_3:3885245-3885264 | Msa0097990:intron | 25.0% |
| ! | AACACACAGATAATGAAAAA+GGG | + | chr1_3:3885411-3885430 | None:intergenic | 25.0% |
| ! | ATTATACAGTTCTATATCTC+TGG | + | chr1_3:3885477-3885496 | None:intergenic | 25.0% |
| !! | CAATTATTTCTTGTGATGTA+GGG | - | chr1_3:3885719-3885738 | Msa0097990:five_prime_UTR | 25.0% |
| !! | AATTATTTCTTGTGATGTAG+GGG | - | chr1_3:3885720-3885739 | Msa0097990:five_prime_UTR | 25.0% |
| AATTACTGTTCACAGATGAT+GGG | + | chr1_3:3883388-3883407 | Msa0097980:CDS | 30.0% | |
| AAATTACTGTTCACAGATGA+TGG | + | chr1_3:3883389-3883408 | Msa0097980:CDS | 30.0% | |
| TGTGAACAGTAATTTATCTG+TGG | - | chr1_3:3883394-3883413 | Msa0097990:three_prime_UTR | 30.0% | |
| ! | GAAGCTGTAGTTCTATATAT+TGG | - | chr1_3:3883474-3883493 | Msa0097990:three_prime_UTR | 30.0% |
| CCAAGATTTCAACAAACAAA+TGG | + | chr1_3:3883656-3883675 | Msa0097980:intron | 30.0% | |
| ! | CCATTTGTTTGTTGAAATCT+TGG | - | chr1_3:3883653-3883672 | Msa0097990:three_prime_UTR | 30.0% |
| !!! | TTTGGTTTTTAACTTCCACA+AGG | - | chr1_3:3883707-3883726 | Msa0097990:three_prime_UTR | 30.0% |
| TGACAAAATAACAAACCTTG+TGG | + | chr1_3:3883725-3883744 | Msa0097980:intron | 30.0% | |
| !! | GTTTTTCAGTAATCATGTAG+GGG | - | chr1_3:3883757-3883776 | Msa0097990:three_prime_UTR | 30.0% |
| AATATAAAAGGGTAGATGGA+TGG | - | chr1_3:3883967-3883986 | Msa0097990:CDS | 30.0% | |
| ATATAAAAGGGTAGATGGAT+GGG | - | chr1_3:3883968-3883987 | Msa0097990:CDS | 30.0% | |
| !!! | GAAGAATCTGAGTGTTTTTT+AGG | - | chr1_3:3884008-3884027 | Msa0097990:exon | 30.0% |
| GCAAAAGTTGAAATACATGA+TGG | - | chr1_3:3884060-3884079 | Msa0097990:five_prime_UTR | 30.0% | |
| TTAGATCAAAGTGGAAAATG+GGG | + | chr1_3:3884217-3884236 | Msa0097980:intron | 30.0% | |
| CTTTAGATCAAAGTGGAAAA+TGG | + | chr1_3:3884219-3884238 | Msa0097980:intron | 30.0% | |
| GAAGTTGGATCTAGTATTTA+CGG | + | chr1_3:3884313-3884332 | Msa0097980:intron | 30.0% | |
| TTCATATATATGGCAGCAAA+TGG | + | chr1_3:3884371-3884390 | None:intergenic | 30.0% | |
| TATATGAAAAATGTCCTTGC+AGG | - | chr1_3:3884383-3884402 | Msa0097990:intron | 30.0% | |
| GTGTCTAATTTAACATACAG+CGG | - | chr1_3:3884669-3884688 | Msa0097990:intron | 30.0% | |
| CAGATAAAACTAAATGAGCA+AGG | + | chr1_3:3884852-3884871 | None:intergenic | 30.0% | |
| ACTTGATGAATTCATTCTAG+CGG | - | chr1_3:3884891-3884910 | Msa0097990:intron | 30.0% | |
| CATAGGTACCTTATGATTTA+AGG | - | chr1_3:3885003-3885022 | Msa0097990:intron | 30.0% | |
| ! | AACACAAAACAGGTTAGTTA+AGG | + | chr1_3:3885141-3885160 | None:intergenic | 30.0% |
| ! | ATGGAAGTGTACATAATACA+TGG | + | chr1_3:3885328-3885347 | None:intergenic | 30.0% |
| ATGTATTATGTACACTTCCA+TGG | - | chr1_3:3885327-3885346 | Msa0097990:intron | 30.0% | |
| TTGTAGACATTCAGAAAGTT+GGG | - | chr1_3:3885374-3885393 | Msa0097990:intron | 30.0% | |
| GAACACACAGATAATGAAAA+AGG | + | chr1_3:3885412-3885431 | None:intergenic | 30.0% | |
| !!! | CTTGCTCATTTCACTTTTTA+AGG | - | chr1_3:3885529-3885548 | Msa0097990:five_prime_UTR | 30.0% |
| ATCTTATTACACCAGTACTT+TGG | - | chr1_3:3885583-3885602 | Msa0097990:five_prime_UTR | 30.0% | |
| CCTACATCACAAGAAATAAT+TGG | + | chr1_3:3885721-3885740 | None:intergenic | 30.0% | |
| ! | CCAATTATTTCTTGTGATGT+AGG | - | chr1_3:3885718-3885737 | Msa0097990:five_prime_UTR | 30.0% |
| AGAAATGACTATTCTGCAAT+GGG | + | chr1_3:3885778-3885797 | None:intergenic | 30.0% | |
| AAGAAATGACTATTCTGCAA+TGG | + | chr1_3:3885779-3885798 | None:intergenic | 30.0% | |
| ! | TTTCTTCCATTTTGCCAATT+AGG | - | chr1_3:3885793-3885812 | Msa0097990:five_prime_UTR | 30.0% |
| ! | ATTTTGCCAATTAGGATTCT+GGG | - | chr1_3:3885801-3885820 | Msa0097990:five_prime_UTR | 30.0% |
| CTGTAAATTGCAATATTACG+TGG | + | chr1_3:3885828-3885847 | None:intergenic | 30.0% | |
| TGATGGGAAAATCAAACATG+AGG | + | chr1_3:3883372-3883391 | Msa0097980:CDS | 35.0% | |
| !!! | AGCATTCTGCTGTTTTAAAG+TGG | - | chr1_3:3883449-3883468 | Msa0097990:three_prime_UTR | 35.0% |
| GTACACACAAGGTAATATAC+CGG | - | chr1_3:3883559-3883578 | Msa0097990:three_prime_UTR | 35.0% | |
| ! | TGACATCACTGATAATGAGT+TGG | - | chr1_3:3883614-3883633 | Msa0097990:three_prime_UTR | 35.0% |
| CTCGGAAATCGAGATAAATT+AGG | - | chr1_3:3883920-3883939 | Msa0097990:CDS | 35.0% | |
| GTGGAATATAAAAGGGTAGA+TGG | - | chr1_3:3883963-3883982 | Msa0097990:CDS | 35.0% | |
| GGTGTCAGAATTAGAATTAG+CGG | - | chr1_3:3884098-3884117 | Msa0097990:intron | 35.0% | |
| GTGTCAGAATTAGAATTAGC+GGG | - | chr1_3:3884099-3884118 | Msa0097990:intron | 35.0% | |
| TGTCAGAATTAGAATTAGCG+GGG | - | chr1_3:3884100-3884119 | Msa0097990:intron | 35.0% | |
| TAGACTCACTATTCAACTGT+AGG | - | chr1_3:3884147-3884166 | Msa0097990:intron | 35.0% | |
| AACAAGGCTTGTATTGAAGA+CGG | + | chr1_3:3884420-3884439 | None:intergenic | 35.0% | |
| !! | AAGGTTGCTTTGGATCTTTT+GGG | + | chr1_3:3884520-3884539 | None:intergenic | 35.0% |
| !! | TAAGGTTGCTTTGGATCTTT+TGG | + | chr1_3:3884521-3884540 | None:intergenic | 35.0% |
| AAGTGAGAATAAGGTTGCTT+TGG | + | chr1_3:3884530-3884549 | None:intergenic | 35.0% | |
| TGCTCAATTAGAAACTCAAC+AGG | + | chr1_3:3884625-3884644 | None:intergenic | 35.0% | |
| CAGCAATCACAAACTTCATT+TGG | + | chr1_3:3884748-3884767 | None:intergenic | 35.0% | |
| AATGAAGTTTGTGATTGCTG+AGG | - | chr1_3:3884748-3884767 | Msa0097990:intron | 35.0% | |
| ATGAAGTTTGTGATTGCTGA+GGG | - | chr1_3:3884749-3884768 | Msa0097990:intron | 35.0% | |
| CTTGATGAATTCATTCTAGC+GGG | - | chr1_3:3884892-3884911 | Msa0097990:intron | 35.0% | |
| ! | GACATGTGATTGCTAGTTTA+AGG | - | chr1_3:3884971-3884990 | Msa0097990:intron | 35.0% |
| CAGTTAGGCCTTAAATCATA+AGG | + | chr1_3:3885014-3885033 | None:intergenic | 35.0% | |
| TCGATTTCCTTTGCTTCTTT+GGG | - | chr1_3:3885034-3885053 | Msa0097990:intron | 35.0% | |
| ! | ACAGGTTAGTTAAGGAATTG+TGG | + | chr1_3:3885133-3885152 | None:intergenic | 35.0% |
| CAGGCTATCATTGAAAGAAT+GGG | - | chr1_3:3885163-3885182 | Msa0097990:intron | 35.0% | |
| AGGCTATCATTGAAAGAATG+GGG | - | chr1_3:3885164-3885183 | Msa0097990:intron | 35.0% | |
| GTACATAATACATGGCTCAA+GGG | + | chr1_3:3885320-3885339 | None:intergenic | 35.0% | |
| TGTACATAATACATGGCTCA+AGG | + | chr1_3:3885321-3885340 | None:intergenic | 35.0% | |
| ACACGAGATTTAAGAAACCA+TGG | + | chr1_3:3885347-3885366 | None:intergenic | 35.0% | |
| GTTGTAGACATTCAGAAAGT+TGG | - | chr1_3:3885373-3885392 | Msa0097990:intron | 35.0% | |
| TGTAGACATTCAGAAAGTTG+GGG | - | chr1_3:3885375-3885394 | Msa0097990:intron | 35.0% | |
| ! | CTAACTACAAAGAAGCACAA+TGG | + | chr1_3:3885447-3885466 | None:intergenic | 35.0% |
| TCCAACGATTGAAGTAATCT+TGG | - | chr1_3:3885693-3885712 | Msa0097990:five_prime_UTR | 35.0% | |
| TCCAAGATTACTTCAATCGT+TGG | + | chr1_3:3885697-3885716 | None:intergenic | 35.0% | |
| GGTATGAGGAAAGATGATTT+GGG | - | chr1_3:3885741-3885760 | Msa0097990:five_prime_UTR | 35.0% | |
| GTATGAGGAAAGATGATTTG+GGG | - | chr1_3:3885742-3885761 | Msa0097990:five_prime_UTR | 35.0% | |
| ! | TATGAGGAAAGATGATTTGG+GGG | - | chr1_3:3885743-3885762 | Msa0097990:five_prime_UTR | 35.0% |
| CAGAATCCTAATTGGCAAAA+TGG | + | chr1_3:3885802-3885821 | None:intergenic | 35.0% | |
| ! | CATTTTGCCAATTAGGATTC+TGG | - | chr1_3:3885800-3885819 | Msa0097990:five_prime_UTR | 35.0% |
| !! | ACAAGAGCACCAAAAATTGT+GGG | + | chr1_3:3885881-3885900 | None:intergenic | 35.0% |
| !! | AACAAGAGCACCAAAAATTG+TGG | + | chr1_3:3885882-3885901 | None:intergenic | 35.0% |
| GATGCACGGTTACTAAACAA+CGG | + | chr1_3:3883323-3883342 | Msa0097980:intron | 40.0% | |
| TGGGAGAAAAAACTGATGCA+CGG | + | chr1_3:3883337-3883356 | Msa0097980:intron | 40.0% | |
| CATGAGGAAGCAAAAGAGAT+GGG | + | chr1_3:3883356-3883375 | Msa0097980:CDS | 40.0% | |
| ACATGAGGAAGCAAAAGAGA+TGG | + | chr1_3:3883357-3883376 | Msa0097980:CDS | 40.0% | |
| GTAATATACCGGAGATATGC+TGG | - | chr1_3:3883570-3883589 | Msa0097990:three_prime_UTR | 40.0% | |
| AAAACAGTCCAGCATATCTC+CGG | + | chr1_3:3883581-3883600 | Msa0097980:intron | 40.0% | |
| CAATGTCTGCGAACTTGATT+TGG | - | chr1_3:3883689-3883708 | Msa0097990:three_prime_UTR | 40.0% | |
| !! | GATGCTGCTTTAGATCAAAG+TGG | + | chr1_3:3884226-3884245 | Msa0097980:intron | 40.0% |
| CTAGGTCTTCTACAAGAAGT+TGG | + | chr1_3:3884328-3884347 | Msa0097980:intron | 40.0% | |
| ! | CGGAATCAAATTTTCCTGCA+AGG | + | chr1_3:3884400-3884419 | None:intergenic | 40.0% |
| !! | AGGTTGCTTTGGATCTTTTG+GGG | + | chr1_3:3884519-3884538 | None:intergenic | 40.0% |
| CGTAGTGAACAGTAAGACTT+AGG | + | chr1_3:3884710-3884729 | None:intergenic | 40.0% | |
| ACTGCAAGAAACAAGCAAGA+AGG | - | chr1_3:3884918-3884937 | Msa0097990:intron | 40.0% | |
| AGCAAAGGAAATCGACAGTT+AGG | + | chr1_3:3885029-3885048 | None:intergenic | 40.0% | |
| ! | GTCGATTTCCTTTGCTTCTT+TGG | - | chr1_3:3885033-3885052 | Msa0097990:intron | 40.0% |
| AAATGTGCCCAAAGAAGCAA+AGG | + | chr1_3:3885044-3885063 | None:intergenic | 40.0% | |
| TTCTCTGCTTACGACAATTG+CGG | - | chr1_3:3885062-3885081 | Msa0097990:intron | 40.0% | |
| ! | CTAACCTGTTTTGTGTTTGC+AGG | - | chr1_3:3885144-3885163 | Msa0097990:intron | 40.0% |
| ATAGCCTGCAAACACAAAAC+AGG | + | chr1_3:3885151-3885170 | None:intergenic | 40.0% | |
| GCAGGCTATCATTGAAAGAA+TGG | - | chr1_3:3885162-3885181 | Msa0097990:intron | 40.0% | |
| GGCTATCATTGAAAGAATGG+GGG | - | chr1_3:3885165-3885184 | Msa0097990:intron | 40.0% | |
| ATAATACATGGCTCAAGGGT+GGG | + | chr1_3:3885316-3885335 | None:intergenic | 40.0% | |
| TGTATCACTCATTGTGAGAC+GGG | + | chr1_3:3885509-3885528 | None:intergenic | 40.0% | |
| GTGTATCACTCATTGTGAGA+CGG | + | chr1_3:3885510-3885529 | None:intergenic | 40.0% | |
| AAGATCTTGCCCATTTGTCT+TGG | - | chr1_3:3885644-3885663 | Msa0097990:five_prime_UTR | 40.0% | |
| GGGTATGAGGAAAGATGATT+TGG | - | chr1_3:3885740-3885759 | Msa0097990:five_prime_UTR | 40.0% | |
| ! | ATGAGGAAAGATGATTTGGG+GGG | - | chr1_3:3885744-3885763 | Msa0097990:five_prime_UTR | 40.0% |
| !! | AAGAGCACCAAAAATTGTGG+GGG | + | chr1_3:3885879-3885898 | None:intergenic | 40.0% |
| !! | CAAGAGCACCAAAAATTGTG+GGG | + | chr1_3:3885880-3885899 | None:intergenic | 40.0% |
| GTTGCAGTTTCGTACACACA+AGG | - | chr1_3:3883548-3883567 | Msa0097990:three_prime_UTR | 45.0% | |
| TAAAAGGGTAGATGGATGGG+TGG | - | chr1_3:3883971-3883990 | Msa0097990:CDS | 45.0% | |
| TGGATGGGTGGATATGGAAT+AGG | - | chr1_3:3883983-3884002 | Msa0097990:CDS | 45.0% | |
| GGATGGGTGGATATGGAATA+GGG | - | chr1_3:3883984-3884003 | Msa0097990:CDS | 45.0% | |
| TGATGGCACAAAAAGAGCTG+AGG | - | chr1_3:3884077-3884096 | Msa0097990:intron | 45.0% | |
| CAAAGTGGAAAATGGGGCAA+AGG | + | chr1_3:3884211-3884230 | Msa0097980:intron | 45.0% | |
| ACTGCAGCGAAGTGAGAATA+AGG | + | chr1_3:3884539-3884558 | None:intergenic | 45.0% | |
| AGTTTGTGATTGCTGAGGGT+TGG | - | chr1_3:3884753-3884772 | Msa0097990:intron | 45.0% | |
| GTTTGTGATTGCTGAGGGTT+GGG | - | chr1_3:3884754-3884773 | Msa0097990:intron | 45.0% | |
| ! | GTTTAAGGCTTGAGCTGCAT+AGG | - | chr1_3:3884986-3885005 | Msa0097990:intron | 45.0% |
| ATTTCAGCAGAGTCACGACA+GGG | - | chr1_3:3885216-3885235 | Msa0097990:intron | 45.0% | |
| CATAATACATGGCTCAAGGG+TGG | + | chr1_3:3885317-3885336 | None:intergenic | 45.0% | |
| TATCACTCATTGTGAGACGG+GGG | + | chr1_3:3885507-3885526 | None:intergenic | 45.0% | |
| GTATCACTCATTGTGAGACG+GGG | + | chr1_3:3885508-3885527 | None:intergenic | 45.0% | |
| AGGGACAGATTCCAAAGTAC+TGG | + | chr1_3:3885597-3885616 | None:intergenic | 45.0% | |
| TCTTGCCCATTTGTCTTGGA+TGG | - | chr1_3:3885648-3885667 | Msa0097990:five_prime_UTR | 45.0% | |
| CTTGCCCATTTGTCTTGGAT+GGG | - | chr1_3:3885649-3885668 | Msa0097990:five_prime_UTR | 45.0% | |
| TTGCCCATTTGTCTTGGATG+GGG | - | chr1_3:3885650-3885669 | Msa0097990:five_prime_UTR | 45.0% | |
| TTCCCCCATCCAAGACAAAT+GGG | + | chr1_3:3885656-3885675 | None:intergenic | 45.0% | |
| TTTCCCCCATCCAAGACAAA+TGG | + | chr1_3:3885657-3885676 | None:intergenic | 45.0% | |
| ! | TCTTGTGATGTAGGGGTATG+AGG | - | chr1_3:3885727-3885746 | Msa0097990:five_prime_UTR | 45.0% |
| ! | GTTGCATCCCCCACAATTTT+TGG | - | chr1_3:3885869-3885888 | Msa0097990:five_prime_UTR | 45.0% |
| !! | TGATTTAATATATTATAAAT+TGG | - | chr1_3:3884124-3884143 | Msa0097990:intron | 5.0% |
| GGTAGATGGATGGGTGGATA+TGG | - | chr1_3:3883977-3883996 | Msa0097990:CDS | 50.0% | |
| !! | AGGAGTGCCACATCAGAAGA+TGG | - | chr1_3:3884028-3884047 | Msa0097990:five_prime_UTR | 50.0% |
| GTGCCACATCAGAAGATGGT+CGG | - | chr1_3:3884032-3884051 | Msa0097990:five_prime_UTR | 50.0% | |
| CATCCGACCATCTTCTGATG+TGG | + | chr1_3:3884038-3884057 | Msa0097980:intron | 50.0% | |
| CATCAGAAGATGGTCGGATG+TGG | - | chr1_3:3884038-3884057 | Msa0097990:five_prime_UTR | 50.0% | |
| CATTTCAGCAGAGTCACGAC+AGG | - | chr1_3:3885215-3885234 | Msa0097990:intron | 50.0% | |
| TGCCCATTTGTCTTGGATGG+GGG | - | chr1_3:3885651-3885670 | Msa0097990:five_prime_UTR | 50.0% | |
| ! | AAGATGATTTGGGGGGCACA+TGG | - | chr1_3:3885751-3885770 | Msa0097990:five_prime_UTR | 50.0% |
| CGTGGACCCAGAATCCTAAT+TGG | + | chr1_3:3885810-3885829 | None:intergenic | 50.0% | |
| TGCAACAAGCAGCTCAAGCT+AGG | + | chr1_3:3885855-3885874 | None:intergenic | 50.0% | |
| GTGATTGCTGAGGGTTGGGT+TGG | - | chr1_3:3884758-3884777 | Msa0097990:intron | 55.0% | |
| !! | TGCTGAGGGTTGGGTTGGAG+TGG | - | chr1_3:3884763-3884782 | Msa0097990:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 3883319 | 3885935 | 3883319 | ID=Msa0097990;Name=Msa0097990 |
| chr1_3 | mRNA | 3883319 | 3885935 | 3883319 | ID=Msa0097990-mRNA-1;Parent=Msa0097990;Name=Msa0097990-mRNA-1;_AED=0.02;_eAED=0.02;_QI=548|1|1|1|0.5|0.66|3|578|37 |
| chr1_3 | exon | 3883319 | 3884088 | 3883319 | ID=Msa0097990-mRNA-1:exon:1237;Parent=Msa0097990-mRNA-1 |
| chr1_3 | exon | 3884315 | 3884374 | 3884315 | ID=Msa0097990-mRNA-1:exon:1236;Parent=Msa0097990-mRNA-1 |
| chr1_3 | exon | 3885526 | 3885935 | 3885526 | ID=Msa0097990-mRNA-1:exon:1235;Parent=Msa0097990-mRNA-1 |
| chr1_3 | five_prime_UTR | 3885526 | 3885935 | 3885526 | ID=Msa0097990-mRNA-1:five_prime_utr;Parent=Msa0097990-mRNA-1 |
| chr1_3 | five_prime_UTR | 3884315 | 3884374 | 3884315 | ID=Msa0097990-mRNA-1:five_prime_utr;Parent=Msa0097990-mRNA-1 |
| chr1_3 | five_prime_UTR | 3884011 | 3884088 | 3884011 | ID=Msa0097990-mRNA-1:five_prime_utr;Parent=Msa0097990-mRNA-1 |
| chr1_3 | CDS | 3883897 | 3884010 | 3883897 | ID=Msa0097990-mRNA-1:cds;Parent=Msa0097990-mRNA-1 |
| chr1_3 | three_prime_UTR | 3883319 | 3883896 | 3883319 | ID=Msa0097990-mRNA-1:three_prime_utr;Parent=Msa0097990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
