AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1295150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1295150 MtrunA17_Chr8g0372611 100.000 160 0 0 1 160 1 160 9.58e-118 329
Msa1295150 MtrunA17_Chr4g0065131 97.500 160 4 0 1 160 1 160 5.33e-115 322
Msa1295150 MtrunA17_Chr1g0152301 93.168 161 10 1 1 160 1 161 1.93e-99 283
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1295150 AT3G48930.1 91.250 160 14 0 1 160 1 160 6.92e-98 279
Msa1295150 AT5G23740.1 90.000 160 15 1 1 160 1 159 5.20e-96 274
Msa1295150 AT4G30800.1 90.625 160 14 1 1 160 1 159 4.37e-94 270

Find 63 sgRNAs with CRISPR-Local

Find 275 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGAAGTTCTGATCAATTT+TGG 0.204991 8_3:+53194170 Msa1295150:three_prime_UTR
ATTACCTTCAGTGGCTTCTC+TGG 0.248135 8_3:-53192615 None:intergenic
GAAAAGGTGGAAACCGCTTC+TGG 0.285560 8_3:+53192564 Msa1295150:CDS
CTCACCTTGCTTCCGTGTTA+AGG 0.347416 8_3:+53193829 Msa1295150:CDS
TGTTACAGTTCGAAGAAATC+TGG 0.351234 8_3:+53192524 Msa1295150:intron
AGCAACCCAAAGTGTTTCTA+TGG 0.356385 8_3:+53192420 Msa1295150:CDS
TTCTGGAAATCAGTTGGTCT+TGG 0.368191 8_3:+53192581 Msa1295150:CDS
TTTAGCACTATGGCAAGTTC+CGG 0.400466 8_3:-53193613 None:intergenic
TTACCTTCAGTGGCTTCTCT+GGG 0.406115 8_3:-53192614 None:intergenic
AATATACCATAGAAACACTT+TGG 0.427654 8_3:-53192426 None:intergenic
TTGAAGTTATGTACTGTGAT+TGG 0.428216 8_3:+53194200 Msa1295150:three_prime_UTR
ACCCCGGATGGAAACATTGC+CGG 0.435918 8_3:-53193580 None:intergenic
GAAGGAGATCATGTTATTAT+CGG 0.436388 8_3:+53193851 Msa1295150:CDS
CTTGGGACACAATGTTATGA+TGG 0.439614 8_3:+53194249 Msa1295150:three_prime_UTR
ATGGAAACATTGCCGGTGAA+TGG 0.446336 8_3:-53193573 None:intergenic
TCACCGGCAATGTTTCCATC+CGG 0.450663 8_3:+53193577 Msa1295150:CDS
ATATACCATAGAAACACTTT+GGG 0.455860 8_3:-53192425 None:intergenic
TCTGGAAAGGGGAAGAGGCC+TGG 0.459223 8_3:+53192542 Msa1295150:CDS
CACCGGCAATGTTTCCATCC+GGG 0.463421 8_3:+53193578 Msa1295150:CDS
CACATTGAACCTCACAGTCT+TGG 0.470441 8_3:-53194017 None:intergenic
AGTTCGAAGAAATCTGGAAA+GGG 0.475713 8_3:+53192530 Msa1295150:intron
TGGACACTTCTTGTCAATGT+AGG 0.485606 8_3:-53193553 None:intergenic
TGAATAGAACTATTATTGTC+AGG 0.489336 8_3:+53193637 Msa1295150:CDS
GGCTAAGATACGACCCCGGA+TGG 0.500286 8_3:-53193592 None:intergenic
TCTGAGTGAGCGAGAGAAGA+AGG 0.501010 8_3:+53192234 None:intergenic
GCTGGATCATCTAGTGGTGC+AGG 0.501738 8_3:+53194055 Msa1295150:CDS
AAGTAATTCTGATTTCTGTA+TGG 0.502142 8_3:+53194149 Msa1295150:three_prime_UTR
AAGGGGAAGAGGCCTGGAAA+AGG 0.502986 8_3:+53192548 Msa1295150:CDS
ATCTAGTGGTGCAGGAAAGA+AGG 0.504250 8_3:+53194063 Msa1295150:CDS
ACCTTCAGTGGCTTCTCTGG+GGG 0.522306 8_3:-53192612 None:intergenic
TACTTGTTCAGCCATGGTGA+TGG 0.529963 8_3:-53192297 None:intergenic
ACCGGCAATGTTTCCATCCG+GGG 0.533333 8_3:+53193579 Msa1295150:CDS
GACAAGAAGTGTCCATTCAC+CGG 0.534170 8_3:+53193561 Msa1295150:CDS
GCACCACTAGATGATCCAGC+TGG 0.537223 8_3:-53194052 None:intergenic
TTCTTTGTTACAGACTGAGA+AGG 0.537706 8_3:+53192388 Msa1295150:intron
GGGAAGAGGCCTGGAAAAGG+TGG 0.539251 8_3:+53192551 Msa1295150:CDS
CCTTGCTTCCGTGTTAAGGA+AGG 0.545045 8_3:+53193833 Msa1295150:CDS
GTGATTGACATTACCTTCAG+TGG 0.547077 8_3:-53192624 None:intergenic
ATCCGGGGTCGTATCTTAGC+CGG 0.548552 8_3:+53193594 Msa1295150:CDS
AGAAATCTGGAAAGGGGAAG+AGG 0.548779 8_3:+53192537 Msa1295150:CDS
TACCTTCAGTGGCTTCTCTG+GGG 0.550510 8_3:-53192613 None:intergenic
AACCGCTTCTGGAAATCAGT+TGG 0.551981 8_3:+53192575 Msa1295150:CDS
GACCAACTGATTTCCAGAAG+CGG 0.558273 8_3:-53192577 None:intergenic
AAGCAAGGTGAGACATGAGC+TGG 0.562393 8_3:-53193818 None:intergenic
GGAAGTTACTTGTTCAGCCA+TGG 0.570737 8_3:-53192303 None:intergenic
CAGTTCGAAGAAATCTGGAA+AGG 0.573205 8_3:+53192529 Msa1295150:intron
ATGTTATTATCGGACAATGC+AGG 0.580248 8_3:+53193861 Msa1295150:CDS
CTCTATTTAGGTATGAGAAG+AGG 0.586961 8_3:+53193783 Msa1295150:intron
GTGTTGAAAGTGATCCCAGC+TGG 0.594686 8_3:+53194037 Msa1295150:CDS
AACCTCACAGTCTTGGAGAG+TGG 0.603168 8_3:-53194010 None:intergenic
AGTGAGCGAGAGAAGAAGGT+AGG 0.608997 8_3:+53192238 Msa1295150:five_prime_UTR
CCATGGTGATGGAGTTGCAG+AGG 0.616042 8_3:-53192286 None:intergenic
CCTTCCTTAACACGGAAGCA+AGG 0.616216 8_3:-53193833 None:intergenic
GTTCGAAGAAATCTGGAAAG+GGG 0.616547 8_3:+53192531 Msa1295150:intron
ACTTTATTAAGAAGTATCAG+AGG 0.622717 8_3:+53193673 Msa1295150:CDS
CACCACTAGATGATCCAGCT+GGG 0.624692 8_3:-53194051 None:intergenic
CATGATCTCCTTCCTTAACA+CGG 0.626861 8_3:-53193841 None:intergenic
CCTCTGCAACTCCATCACCA+TGG 0.645543 8_3:+53192286 Msa1295150:exon
ATCCCAGCTGGATCATCTAG+TGG 0.646748 8_3:+53194049 Msa1295150:CDS
AGGTAGGTTTCAAGTTCGTG+CGG 0.650287 8_3:+53192254 Msa1295150:five_prime_UTR
GGCCACTCTCCAAGACTGTG+AGG 0.661246 8_3:+53194008 Msa1295150:intron
ATAGAACTATTATTGTCAGG+AGG 0.690212 8_3:+53193640 Msa1295150:CDS
TTCCGGCTAAGATACGACCC+CGG 0.732863 8_3:-53193596 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAAAAACAGAAATT+GGG - chr8_3:53192459-53192478 None:intergenic 10.0%
!!! CATTTTTTTTTTTATAATAC+AGG + chr8_3:53193528-53193547 Msa1295150:intron 10.0%
!! TAAAAAAAAAAACAGAAATT+GGG - chr8_3:53192459-53192478 None:intergenic 10.0%
!!! CATTTTTTTTTTTATAATAC+AGG + chr8_3:53193528-53193547 Msa1295150:intron 10.0%
!! GAAATTGTAAAATAAATGAA+TGG - chr8_3:53192371-53192390 None:intergenic 15.0%
!! GTAAAAAAAAAAACAGAAAT+TGG - chr8_3:53192460-53192479 None:intergenic 15.0%
!! TCTATGATTATATGATAAAT+TGG + chr8_3:53193071-53193090 Msa1295150:intron 15.0%
!! TGTTTGTAAATAAATAATAG+TGG + chr8_3:53193126-53193145 Msa1295150:intron 15.0%
!!! GTTTCAATTATTTTGAATTT+TGG + chr8_3:53194285-53194304 Msa1295150:three_prime_UTR 15.0%
!! GAAATTGTAAAATAAATGAA+TGG - chr8_3:53192371-53192390 None:intergenic 15.0%
!! GTAAAAAAAAAAACAGAAAT+TGG - chr8_3:53192460-53192479 None:intergenic 15.0%
!! TCTATGATTATATGATAAAT+TGG + chr8_3:53193071-53193090 Msa1295150:intron 15.0%
!! TGTTTGTAAATAAATAATAG+TGG + chr8_3:53193126-53193145 Msa1295150:intron 15.0%
!!! GTTTCAATTATTTTGAATTT+TGG + chr8_3:53194285-53194304 Msa1295150:three_prime_UTR 15.0%
!!! TAGTAACAGTGTTTAATTTT+AGG + chr8_3:53192655-53192674 Msa1295150:intron 20.0%
!!! AGTAACAGTGTTTAATTTTA+GGG + chr8_3:53192656-53192675 Msa1295150:intron 20.0%
!!! TATGTTCTAAACTTACATAT+AGG + chr8_3:53192691-53192710 Msa1295150:intron 20.0%
!!! ATTTATGTATGTTTTGATAC+TGG + chr8_3:53192957-53192976 Msa1295150:intron 20.0%
!! TATTTATTTACAAACACAAC+AGG - chr8_3:53193122-53193141 None:intergenic 20.0%
!! GCAATACTTATTCTAATTAT+TGG + chr8_3:53193170-53193189 Msa1295150:intron 20.0%
!! GAGAAGTAACAAAAAAAAAA+GGG - chr8_3:53193766-53193785 None:intergenic 20.0%
!! AGAGAAGTAACAAAAAAAAA+AGG - chr8_3:53193767-53193786 None:intergenic 20.0%
!!! TTTTTGTTACTTCTCTATTT+AGG + chr8_3:53193771-53193790 Msa1295150:intron 20.0%
!!! TTCGTTATTATGTTTTTTCT+TGG + chr8_3:53194231-53194250 Msa1295150:three_prime_UTR 20.0%
!!! TCGTTATTATGTTTTTTCTT+GGG + chr8_3:53194232-53194251 Msa1295150:three_prime_UTR 20.0%
!!! TAGTAACAGTGTTTAATTTT+AGG + chr8_3:53192655-53192674 Msa1295150:intron 20.0%
!!! AGTAACAGTGTTTAATTTTA+GGG + chr8_3:53192656-53192675 Msa1295150:intron 20.0%
!!! TATGTTCTAAACTTACATAT+AGG + chr8_3:53192691-53192710 Msa1295150:intron 20.0%
!!! ATTTATGTATGTTTTGATAC+TGG + chr8_3:53192957-53192976 Msa1295150:intron 20.0%
!! TATTTATTTACAAACACAAC+AGG - chr8_3:53193122-53193141 None:intergenic 20.0%
!! GCAATACTTATTCTAATTAT+TGG + chr8_3:53193170-53193189 Msa1295150:intron 20.0%
!! GAGAAGTAACAAAAAAAAAA+GGG - chr8_3:53193766-53193785 None:intergenic 20.0%
!! AGAGAAGTAACAAAAAAAAA+AGG - chr8_3:53193767-53193786 None:intergenic 20.0%
!!! TTTTTGTTACTTCTCTATTT+AGG + chr8_3:53193771-53193790 Msa1295150:intron 20.0%
!!! TTCGTTATTATGTTTTTTCT+TGG + chr8_3:53194231-53194250 Msa1295150:three_prime_UTR 20.0%
!!! TCGTTATTATGTTTTTTCTT+GGG + chr8_3:53194232-53194251 Msa1295150:three_prime_UTR 20.0%
! AAAAAGAAATTGTAGAACGA+AGG - chr8_3:53192340-53192359 None:intergenic 25.0%
!!! TCGTTCTACAATTTCTTTTT+TGG + chr8_3:53192340-53192359 Msa1295150:intron 25.0%
! ATATACCATAGAAACACTTT+GGG - chr8_3:53192428-53192447 None:intergenic 25.0%
! AATATACCATAGAAACACTT+TGG - chr8_3:53192429-53192448 None:intergenic 25.0%
! AAACTTACATATAGGAATGT+AGG + chr8_3:53192699-53192718 Msa1295150:intron 25.0%
! AACTTACATATAGGAATGTA+GGG + chr8_3:53192700-53192719 Msa1295150:intron 25.0%
! AACTAAAACAAATACACTCA+AGG - chr8_3:53192743-53192762 None:intergenic 25.0%
!!! ATTTTAGTCCTCAAATGTAT+TGG + chr8_3:53192767-53192786 Msa1295150:intron 25.0%
! TTACCTAAAAATGTAGTCTT+TGG + chr8_3:53192845-53192864 Msa1295150:intron 25.0%
!! ATTCCAAAGACTACATTTTT+AGG - chr8_3:53192851-53192870 None:intergenic 25.0%
!! GTATTGAGACATGTAATTTT+TGG + chr8_3:53193253-53193272 Msa1295150:intron 25.0%
!!! AGACATGTAATTTTTGGTTA+TGG + chr8_3:53193259-53193278 Msa1295150:intron 25.0%
! GGTTATGTTATGTTATGTTA+CGG + chr8_3:53193280-53193299 Msa1295150:intron 25.0%
! AATTTCACTTTCAAAGTAAC+TGG - chr8_3:53193426-53193445 None:intergenic 25.0%
!! ATTGTTAATAGCTCTATGTA+TGG + chr8_3:53193467-53193486 Msa1295150:intron 25.0%
!!! TTCTGTTTCTAATACAGAAA+TGG + chr8_3:53193505-53193524 Msa1295150:intron 25.0%
!!! TTCTATTCATTTTAGCACTA+TGG - chr8_3:53193626-53193645 None:intergenic 25.0%
! TGAATAGAACTATTATTGTC+AGG + chr8_3:53193637-53193656 Msa1295150:CDS 25.0%
!!! ACTTTATTAAGAAGTATCAG+AGG + chr8_3:53193673-53193692 Msa1295150:CDS 25.0%
! AAGTGTGCAAATAAAAAATG+GGG - chr8_3:53193724-53193743 None:intergenic 25.0%
! CAAGTGTGCAAATAAAAAAT+GGG - chr8_3:53193725-53193744 None:intergenic 25.0%
! AAGTAATTCTGATTTCTGTA+TGG + chr8_3:53194149-53194168 Msa1295150:three_prime_UTR 25.0%
! AAAAAGAAATTGTAGAACGA+AGG - chr8_3:53192340-53192359 None:intergenic 25.0%
!!! TCGTTCTACAATTTCTTTTT+TGG + chr8_3:53192340-53192359 Msa1295150:intron 25.0%
! ATATACCATAGAAACACTTT+GGG - chr8_3:53192428-53192447 None:intergenic 25.0%
! AATATACCATAGAAACACTT+TGG - chr8_3:53192429-53192448 None:intergenic 25.0%
! AAACTTACATATAGGAATGT+AGG + chr8_3:53192699-53192718 Msa1295150:intron 25.0%
! AACTTACATATAGGAATGTA+GGG + chr8_3:53192700-53192719 Msa1295150:intron 25.0%
! AACTAAAACAAATACACTCA+AGG - chr8_3:53192743-53192762 None:intergenic 25.0%
!!! ATTTTAGTCCTCAAATGTAT+TGG + chr8_3:53192767-53192786 Msa1295150:intron 25.0%
! TTACCTAAAAATGTAGTCTT+TGG + chr8_3:53192845-53192864 Msa1295150:intron 25.0%
!! ATTCCAAAGACTACATTTTT+AGG - chr8_3:53192851-53192870 None:intergenic 25.0%
!! GTATTGAGACATGTAATTTT+TGG + chr8_3:53193253-53193272 Msa1295150:intron 25.0%
!!! AGACATGTAATTTTTGGTTA+TGG + chr8_3:53193259-53193278 Msa1295150:intron 25.0%
! GGTTATGTTATGTTATGTTA+CGG + chr8_3:53193280-53193299 Msa1295150:intron 25.0%
! AATTTCACTTTCAAAGTAAC+TGG - chr8_3:53193426-53193445 None:intergenic 25.0%
!! ATTGTTAATAGCTCTATGTA+TGG + chr8_3:53193467-53193486 Msa1295150:intron 25.0%
!!! TTCTGTTTCTAATACAGAAA+TGG + chr8_3:53193505-53193524 Msa1295150:intron 25.0%
!!! TTCTATTCATTTTAGCACTA+TGG - chr8_3:53193626-53193645 None:intergenic 25.0%
! TGAATAGAACTATTATTGTC+AGG + chr8_3:53193637-53193656 Msa1295150:CDS 25.0%
!!! ACTTTATTAAGAAGTATCAG+AGG + chr8_3:53193673-53193692 Msa1295150:CDS 25.0%
! AAGTGTGCAAATAAAAAATG+GGG - chr8_3:53193724-53193743 None:intergenic 25.0%
! CAAGTGTGCAAATAAAAAAT+GGG - chr8_3:53193725-53193744 None:intergenic 25.0%
! AAGTAATTCTGATTTCTGTA+TGG + chr8_3:53194149-53194168 Msa1295150:three_prime_UTR 25.0%
TCCTCAAATGTATTGGATTT+GGG + chr8_3:53192774-53192793 Msa1295150:intron 30.0%
!! ACACTATTTCTTTTGCATAG+TGG + chr8_3:53192914-53192933 Msa1295150:intron 30.0%
TATAGACCAATTCTTTCAAG+CGG - chr8_3:53193309-53193328 None:intergenic 30.0%
ACACTTGCAAGACATAATAT+AGG - chr8_3:53193353-53193372 None:intergenic 30.0%
! AATAGCTCTATGTATGGTTA+CGG + chr8_3:53193473-53193492 Msa1295150:intron 30.0%
ATAGAACTATTATTGTCAGG+AGG + chr8_3:53193640-53193659 Msa1295150:CDS 30.0%
!! TTAAGAAGTATCAGAGGTAT+TGG + chr8_3:53193679-53193698 Msa1295150:intron 30.0%
! ATTGGTTTCCTTTCATACTA+TGG + chr8_3:53193697-53193716 Msa1295150:intron 30.0%
CCAAGTGTGCAAATAAAAAA+TGG - chr8_3:53193726-53193745 None:intergenic 30.0%
!!! CCATTTTTTATTTGCACACT+TGG + chr8_3:53193723-53193742 Msa1295150:intron 30.0%
GAAGGAGATCATGTTATTAT+CGG + chr8_3:53193851-53193870 Msa1295150:CDS 30.0%
TCCTACAGAAAGAAAAAGAA+AGG - chr8_3:53193906-53193925 None:intergenic 30.0%
TAAAGAAGTGGCACAAATAA+AGG - chr8_3:53193988-53194007 None:intergenic 30.0%
!! TTTATTTGTGCCACTTCTTT+AGG + chr8_3:53193987-53194006 Msa1295150:intron 30.0%
TTGAAGTTATGTACTGTGAT+TGG + chr8_3:53194200-53194219 Msa1295150:three_prime_UTR 30.0%
TCCTCAAATGTATTGGATTT+GGG + chr8_3:53192774-53192793 Msa1295150:intron 30.0%
!! ACACTATTTCTTTTGCATAG+TGG + chr8_3:53192914-53192933 Msa1295150:intron 30.0%
TATAGACCAATTCTTTCAAG+CGG - chr8_3:53193309-53193328 None:intergenic 30.0%
ACACTTGCAAGACATAATAT+AGG - chr8_3:53193353-53193372 None:intergenic 30.0%
! AATAGCTCTATGTATGGTTA+CGG + chr8_3:53193473-53193492 Msa1295150:intron 30.0%
ATAGAACTATTATTGTCAGG+AGG + chr8_3:53193640-53193659 Msa1295150:CDS 30.0%
!! TTAAGAAGTATCAGAGGTAT+TGG + chr8_3:53193679-53193698 Msa1295150:intron 30.0%
! ATTGGTTTCCTTTCATACTA+TGG + chr8_3:53193697-53193716 Msa1295150:intron 30.0%
CCAAGTGTGCAAATAAAAAA+TGG - chr8_3:53193726-53193745 None:intergenic 30.0%
!!! CCATTTTTTATTTGCACACT+TGG + chr8_3:53193723-53193742 Msa1295150:intron 30.0%
GAAGGAGATCATGTTATTAT+CGG + chr8_3:53193851-53193870 Msa1295150:CDS 30.0%
TCCTACAGAAAGAAAAAGAA+AGG - chr8_3:53193906-53193925 None:intergenic 30.0%
TAAAGAAGTGGCACAAATAA+AGG - chr8_3:53193988-53194007 None:intergenic 30.0%
!! TTTATTTGTGCCACTTCTTT+AGG + chr8_3:53193987-53194006 Msa1295150:intron 30.0%
TTGAAGTTATGTACTGTGAT+TGG + chr8_3:53194200-53194219 Msa1295150:three_prime_UTR 30.0%
TTCTTTGTTACAGACTGAGA+AGG + chr8_3:53192388-53192407 Msa1295150:intron 35.0%
TGTTACAGTTCGAAGAAATC+TGG + chr8_3:53192524-53192543 Msa1295150:intron 35.0%
AGTTCGAAGAAATCTGGAAA+GGG + chr8_3:53192530-53192549 Msa1295150:intron 35.0%
! TGTAGGGATAAACAGCATTT+TGG + chr8_3:53192716-53192735 Msa1295150:intron 35.0%
GTCCTCAAATGTATTGGATT+TGG + chr8_3:53192773-53192792 Msa1295150:intron 35.0%
CCTCAAATGTATTGGATTTG+GGG + chr8_3:53192775-53192794 Msa1295150:intron 35.0%
CGAGATAAGGATAGAAACAT+TGG + chr8_3:53192875-53192894 Msa1295150:intron 35.0%
GGCTTATTTACAAACACAAC+AGG - chr8_3:53193101-53193120 None:intergenic 35.0%
! TTATGTCTTGCAAGTGTTGT+TGG + chr8_3:53193356-53193375 Msa1295150:intron 35.0%
! TATGTCTTGCAAGTGTTGTT+GGG + chr8_3:53193357-53193376 Msa1295150:intron 35.0%
CTCTATTTAGGTATGAGAAG+AGG + chr8_3:53193783-53193802 Msa1295150:intron 35.0%
ATGTTATTATCGGACAATGC+AGG + chr8_3:53193861-53193880 Msa1295150:CDS 35.0%
! GCCTTTCTTTTTCTTTCTGT+AGG + chr8_3:53193902-53193921 Msa1295150:intron 35.0%
!! GGTGAAGTTCTGATCAATTT+TGG + chr8_3:53194170-53194189 Msa1295150:three_prime_UTR 35.0%
!! TTTGAATTTTGGCGTCTGAA+AGG + chr8_3:53194296-53194315 Msa1295150:three_prime_UTR 35.0%
! GAATTTTCTCACGTATAGAG+AGG + chr8_3:53194318-53194337 Msa1295150:three_prime_UTR 35.0%
TTCTTTGTTACAGACTGAGA+AGG + chr8_3:53192388-53192407 Msa1295150:intron 35.0%
TGTTACAGTTCGAAGAAATC+TGG + chr8_3:53192524-53192543 Msa1295150:intron 35.0%
AGTTCGAAGAAATCTGGAAA+GGG + chr8_3:53192530-53192549 Msa1295150:intron 35.0%
! TGTAGGGATAAACAGCATTT+TGG + chr8_3:53192716-53192735 Msa1295150:intron 35.0%
GTCCTCAAATGTATTGGATT+TGG + chr8_3:53192773-53192792 Msa1295150:intron 35.0%
CCTCAAATGTATTGGATTTG+GGG + chr8_3:53192775-53192794 Msa1295150:intron 35.0%
CGAGATAAGGATAGAAACAT+TGG + chr8_3:53192875-53192894 Msa1295150:intron 35.0%
GGCTTATTTACAAACACAAC+AGG - chr8_3:53193101-53193120 None:intergenic 35.0%
! TTATGTCTTGCAAGTGTTGT+TGG + chr8_3:53193356-53193375 Msa1295150:intron 35.0%
! TATGTCTTGCAAGTGTTGTT+GGG + chr8_3:53193357-53193376 Msa1295150:intron 35.0%
CTCTATTTAGGTATGAGAAG+AGG + chr8_3:53193783-53193802 Msa1295150:intron 35.0%
ATGTTATTATCGGACAATGC+AGG + chr8_3:53193861-53193880 Msa1295150:CDS 35.0%
! GCCTTTCTTTTTCTTTCTGT+AGG + chr8_3:53193902-53193921 Msa1295150:intron 35.0%
!! GGTGAAGTTCTGATCAATTT+TGG + chr8_3:53194170-53194189 Msa1295150:three_prime_UTR 35.0%
!! TTTGAATTTTGGCGTCTGAA+AGG + chr8_3:53194296-53194315 Msa1295150:three_prime_UTR 35.0%
! AGCAACCCAAAGTGTTTCTA+TGG + chr8_3:53192420-53192439 Msa1295150:CDS 40.0%
CAGTTCGAAGAAATCTGGAA+AGG + chr8_3:53192529-53192548 Msa1295150:intron 40.0%
GTTCGAAGAAATCTGGAAAG+GGG + chr8_3:53192531-53192550 Msa1295150:intron 40.0%
! TTCTGGAAATCAGTTGGTCT+TGG + chr8_3:53192581-53192600 Msa1295150:CDS 40.0%
GTGATTGACATTACCTTCAG+TGG - chr8_3:53192627-53192646 None:intergenic 40.0%
CCCCAAATCCAATACATTTG+AGG - chr8_3:53192778-53192797 None:intergenic 40.0%
TAATAGAGCCTCACATTCGA+GGG + chr8_3:53192809-53192828 Msa1295150:intron 40.0%
!! CTTTGGAATGAGACGAGATA+AGG + chr8_3:53192862-53192881 Msa1295150:intron 40.0%
! TGTTTGTCTGAGATTCCTCT+TGG + chr8_3:53193005-53193024 Msa1295150:intron 40.0%
AGATTCCTCTTGGCAATATC+AGG + chr8_3:53193015-53193034 Msa1295150:intron 40.0%
TGGACACTTCTTGTCAATGT+AGG - chr8_3:53193556-53193575 None:intergenic 40.0%
TTTAGCACTATGGCAAGTTC+CGG - chr8_3:53193616-53193635 None:intergenic 40.0%
AATGGGGACCATAGTATGAA+AGG - chr8_3:53193708-53193727 None:intergenic 40.0%
CATGATCTCCTTCCTTAACA+CGG - chr8_3:53193844-53193863 None:intergenic 40.0%
CAATGCAGGTGAGACTTTAT+AGG + chr8_3:53193875-53193894 Msa1295150:intron 40.0%
CTTGGGACACAATGTTATGA+TGG + chr8_3:53194249-53194268 Msa1295150:three_prime_UTR 40.0%
! AGCAACCCAAAGTGTTTCTA+TGG + chr8_3:53192420-53192439 Msa1295150:CDS 40.0%
CAGTTCGAAGAAATCTGGAA+AGG + chr8_3:53192529-53192548 Msa1295150:intron 40.0%
GTTCGAAGAAATCTGGAAAG+GGG + chr8_3:53192531-53192550 Msa1295150:intron 40.0%
! TTCTGGAAATCAGTTGGTCT+TGG + chr8_3:53192581-53192600 Msa1295150:CDS 40.0%
GTGATTGACATTACCTTCAG+TGG - chr8_3:53192627-53192646 None:intergenic 40.0%
CCCCAAATCCAATACATTTG+AGG - chr8_3:53192778-53192797 None:intergenic 40.0%
TAATAGAGCCTCACATTCGA+GGG + chr8_3:53192809-53192828 Msa1295150:intron 40.0%
!! CTTTGGAATGAGACGAGATA+AGG + chr8_3:53192862-53192881 Msa1295150:intron 40.0%
! TGTTTGTCTGAGATTCCTCT+TGG + chr8_3:53193005-53193024 Msa1295150:intron 40.0%
AGATTCCTCTTGGCAATATC+AGG + chr8_3:53193015-53193034 Msa1295150:intron 40.0%
TGGACACTTCTTGTCAATGT+AGG - chr8_3:53193556-53193575 None:intergenic 40.0%
TTTAGCACTATGGCAAGTTC+CGG - chr8_3:53193616-53193635 None:intergenic 40.0%
AATGGGGACCATAGTATGAA+AGG - chr8_3:53193708-53193727 None:intergenic 40.0%
CATGATCTCCTTCCTTAACA+CGG - chr8_3:53193844-53193863 None:intergenic 40.0%
CAATGCAGGTGAGACTTTAT+AGG + chr8_3:53193875-53193894 Msa1295150:intron 40.0%
CTTGGGACACAATGTTATGA+TGG + chr8_3:53194249-53194268 Msa1295150:three_prime_UTR 40.0%
!! AGGTAGGTTTCAAGTTCGTG+CGG + chr8_3:53192254-53192273 Msa1295150:five_prime_UTR 45.0%
TACTTGTTCAGCCATGGTGA+TGG - chr8_3:53192300-53192319 None:intergenic 45.0%
GGAAGTTACTTGTTCAGCCA+TGG - chr8_3:53192306-53192325 None:intergenic 45.0%
! AGAACGAAGGAGTGTGAAGA+AGG - chr8_3:53192327-53192346 None:intergenic 45.0%
AGAAATCTGGAAAGGGGAAG+AGG + chr8_3:53192537-53192556 Msa1295150:CDS 45.0%
! AACCGCTTCTGGAAATCAGT+TGG + chr8_3:53192575-53192594 Msa1295150:CDS 45.0%
! GACCAACTGATTTCCAGAAG+CGG - chr8_3:53192580-53192599 None:intergenic 45.0%
TTACCTTCAGTGGCTTCTCT+GGG - chr8_3:53192617-53192636 None:intergenic 45.0%
ATTACCTTCAGTGGCTTCTC+TGG - chr8_3:53192618-53192637 None:intergenic 45.0%
GTAATAGAGCCTCACATTCG+AGG + chr8_3:53192808-53192827 Msa1295150:intron 45.0%
!! CTGAGCGTCTAGCTTTGTAT+TGG + chr8_3:53192980-53192999 Msa1295150:intron 45.0%
TTCCTCTTGGCAATATCAGG+TGG + chr8_3:53193018-53193037 Msa1295150:intron 45.0%
CGGTATCCGCTTGAAAGAAT+TGG + chr8_3:53193300-53193319 Msa1295150:intron 45.0%
! TCTTGCAAGTGTTGTTGGGA+AGG + chr8_3:53193361-53193380 Msa1295150:intron 45.0%
!! GACAAGAAGTGTCCATTCAC+CGG + chr8_3:53193561-53193580 Msa1295150:CDS 45.0%
ATGGAAACATTGCCGGTGAA+TGG - chr8_3:53193576-53193595 None:intergenic 45.0%
CACATTGAACCTCACAGTCT+TGG - chr8_3:53194020-53194039 None:intergenic 45.0%
ATCTAGTGGTGCAGGAAAGA+AGG + chr8_3:53194063-53194082 Msa1295150:CDS 45.0%
! GCAGGAAAGAAGGCTTTTAC+TGG + chr8_3:53194073-53194092 Msa1295150:CDS 45.0%
!! AGGTAGGTTTCAAGTTCGTG+CGG + chr8_3:53192254-53192273 Msa1295150:five_prime_UTR 45.0%
TACTTGTTCAGCCATGGTGA+TGG - chr8_3:53192300-53192319 None:intergenic 45.0%
GGAAGTTACTTGTTCAGCCA+TGG - chr8_3:53192306-53192325 None:intergenic 45.0%
! AGAACGAAGGAGTGTGAAGA+AGG - chr8_3:53192327-53192346 None:intergenic 45.0%
AGAAATCTGGAAAGGGGAAG+AGG + chr8_3:53192537-53192556 Msa1295150:CDS 45.0%
! AACCGCTTCTGGAAATCAGT+TGG + chr8_3:53192575-53192594 Msa1295150:CDS 45.0%
! GACCAACTGATTTCCAGAAG+CGG - chr8_3:53192580-53192599 None:intergenic 45.0%
TTACCTTCAGTGGCTTCTCT+GGG - chr8_3:53192617-53192636 None:intergenic 45.0%
ATTACCTTCAGTGGCTTCTC+TGG - chr8_3:53192618-53192637 None:intergenic 45.0%
GTAATAGAGCCTCACATTCG+AGG + chr8_3:53192808-53192827 Msa1295150:intron 45.0%
!! CTGAGCGTCTAGCTTTGTAT+TGG + chr8_3:53192980-53192999 Msa1295150:intron 45.0%
TTCCTCTTGGCAATATCAGG+TGG + chr8_3:53193018-53193037 Msa1295150:intron 45.0%
CGGTATCCGCTTGAAAGAAT+TGG + chr8_3:53193300-53193319 Msa1295150:intron 45.0%
! TCTTGCAAGTGTTGTTGGGA+AGG + chr8_3:53193361-53193380 Msa1295150:intron 45.0%
!! GACAAGAAGTGTCCATTCAC+CGG + chr8_3:53193561-53193580 Msa1295150:CDS 45.0%
ATGGAAACATTGCCGGTGAA+TGG - chr8_3:53193576-53193595 None:intergenic 45.0%
CACATTGAACCTCACAGTCT+TGG - chr8_3:53194020-53194039 None:intergenic 45.0%
ATCTAGTGGTGCAGGAAAGA+AGG + chr8_3:53194063-53194082 Msa1295150:CDS 45.0%
! GCAGGAAAGAAGGCTTTTAC+TGG + chr8_3:53194073-53194092 Msa1295150:CDS 45.0%
AGTGAGCGAGAGAAGAAGGT+AGG + chr8_3:53192238-53192257 Msa1295150:five_prime_UTR 50.0%
! AAGCGGTTTCCACCTTTTCC+AGG - chr8_3:53192563-53192582 None:intergenic 50.0%
GAAAAGGTGGAAACCGCTTC+TGG + chr8_3:53192564-53192583 Msa1295150:CDS 50.0%
TACCTTCAGTGGCTTCTCTG+GGG - chr8_3:53192616-53192635 None:intergenic 50.0%
GTTATGCTCCCTCGAATGTG+AGG - chr8_3:53192820-53192839 None:intergenic 50.0%
AGCCACCTGATATTGCCAAG+AGG - chr8_3:53193023-53193042 None:intergenic 50.0%
TCACCGGCAATGTTTCCATC+CGG + chr8_3:53193577-53193596 Msa1295150:CDS 50.0%
AAGCAAGGTGAGACATGAGC+TGG - chr8_3:53193821-53193840 None:intergenic 50.0%
CTCACCTTGCTTCCGTGTTA+AGG + chr8_3:53193829-53193848 Msa1295150:CDS 50.0%
CCTTCCTTAACACGGAAGCA+AGG - chr8_3:53193836-53193855 None:intergenic 50.0%
CCTTGCTTCCGTGTTAAGGA+AGG + chr8_3:53193833-53193852 Msa1295150:CDS 50.0%
TGGAGAGTGGCCTAAAGAAG+TGG - chr8_3:53194000-53194019 None:intergenic 50.0%
AACCTCACAGTCTTGGAGAG+TGG - chr8_3:53194013-53194032 None:intergenic 50.0%
GTGTTGAAAGTGATCCCAGC+TGG + chr8_3:53194037-53194056 Msa1295150:CDS 50.0%
ATCCCAGCTGGATCATCTAG+TGG + chr8_3:53194049-53194068 Msa1295150:CDS 50.0%
CACCACTAGATGATCCAGCT+GGG - chr8_3:53194054-53194073 None:intergenic 50.0%
AGTGAGCGAGAGAAGAAGGT+AGG + chr8_3:53192238-53192257 Msa1295150:five_prime_UTR 50.0%
! AAGCGGTTTCCACCTTTTCC+AGG - chr8_3:53192563-53192582 None:intergenic 50.0%
GAAAAGGTGGAAACCGCTTC+TGG + chr8_3:53192564-53192583 Msa1295150:CDS 50.0%
TACCTTCAGTGGCTTCTCTG+GGG - chr8_3:53192616-53192635 None:intergenic 50.0%
GTTATGCTCCCTCGAATGTG+AGG - chr8_3:53192820-53192839 None:intergenic 50.0%
AGCCACCTGATATTGCCAAG+AGG - chr8_3:53193023-53193042 None:intergenic 50.0%
TCACCGGCAATGTTTCCATC+CGG + chr8_3:53193577-53193596 Msa1295150:CDS 50.0%
AAGCAAGGTGAGACATGAGC+TGG - chr8_3:53193821-53193840 None:intergenic 50.0%
CTCACCTTGCTTCCGTGTTA+AGG + chr8_3:53193829-53193848 Msa1295150:CDS 50.0%
CCTTCCTTAACACGGAAGCA+AGG - chr8_3:53193836-53193855 None:intergenic 50.0%
CCTTGCTTCCGTGTTAAGGA+AGG + chr8_3:53193833-53193852 Msa1295150:CDS 50.0%
TGGAGAGTGGCCTAAAGAAG+TGG - chr8_3:53194000-53194019 None:intergenic 50.0%
AACCTCACAGTCTTGGAGAG+TGG - chr8_3:53194013-53194032 None:intergenic 50.0%
GTGTTGAAAGTGATCCCAGC+TGG + chr8_3:53194037-53194056 Msa1295150:CDS 50.0%
ATCCCAGCTGGATCATCTAG+TGG + chr8_3:53194049-53194068 Msa1295150:CDS 50.0%
CACCACTAGATGATCCAGCT+GGG - chr8_3:53194054-53194073 None:intergenic 50.0%
!! CCATGGTGATGGAGTTGCAG+AGG - chr8_3:53192289-53192308 None:intergenic 55.0%
CCTCTGCAACTCCATCACCA+TGG + chr8_3:53192286-53192305 Msa1295150:exon 55.0%
AAGGGGAAGAGGCCTGGAAA+AGG + chr8_3:53192548-53192567 Msa1295150:CDS 55.0%
ACCTTCAGTGGCTTCTCTGG+GGG - chr8_3:53192615-53192634 None:intergenic 55.0%
CACCGGCAATGTTTCCATCC+GGG + chr8_3:53193578-53193597 Msa1295150:CDS 55.0%
ACCGGCAATGTTTCCATCCG+GGG + chr8_3:53193579-53193598 Msa1295150:CDS 55.0%
ACCCCGGATGGAAACATTGC+CGG - chr8_3:53193583-53193602 None:intergenic 55.0%
ATCCGGGGTCGTATCTTAGC+CGG + chr8_3:53193594-53193613 Msa1295150:CDS 55.0%
TTCCGGCTAAGATACGACCC+CGG - chr8_3:53193599-53193618 None:intergenic 55.0%
GCACCACTAGATGATCCAGC+TGG - chr8_3:53194055-53194074 None:intergenic 55.0%
GCTGGATCATCTAGTGGTGC+AGG + chr8_3:53194055-53194074 Msa1295150:CDS 55.0%
!! CCATGGTGATGGAGTTGCAG+AGG - chr8_3:53192289-53192308 None:intergenic 55.0%
CCTCTGCAACTCCATCACCA+TGG + chr8_3:53192286-53192305 Msa1295150:exon 55.0%
AAGGGGAAGAGGCCTGGAAA+AGG + chr8_3:53192548-53192567 Msa1295150:CDS 55.0%
ACCTTCAGTGGCTTCTCTGG+GGG - chr8_3:53192615-53192634 None:intergenic 55.0%
CACCGGCAATGTTTCCATCC+GGG + chr8_3:53193578-53193597 Msa1295150:CDS 55.0%
ACCGGCAATGTTTCCATCCG+GGG + chr8_3:53193579-53193598 Msa1295150:CDS 55.0%
ACCCCGGATGGAAACATTGC+CGG - chr8_3:53193583-53193602 None:intergenic 55.0%
ATCCGGGGTCGTATCTTAGC+CGG + chr8_3:53193594-53193613 Msa1295150:CDS 55.0%
TTCCGGCTAAGATACGACCC+CGG - chr8_3:53193599-53193618 None:intergenic 55.0%
GCACCACTAGATGATCCAGC+TGG - chr8_3:53194055-53194074 None:intergenic 55.0%
GCTGGATCATCTAGTGGTGC+AGG + chr8_3:53194055-53194074 Msa1295150:CDS 55.0%
TCTGGAAAGGGGAAGAGGCC+TGG + chr8_3:53192542-53192561 Msa1295150:CDS 60.0%
GGGAAGAGGCCTGGAAAAGG+TGG + chr8_3:53192551-53192570 Msa1295150:CDS 60.0%
ACCCCCAGAGAAGCCACTGA+AGG + chr8_3:53192611-53192630 Msa1295150:CDS 60.0%
GGCTAAGATACGACCCCGGA+TGG - chr8_3:53193595-53193614 None:intergenic 60.0%
GGCCACTCTCCAAGACTGTG+AGG + chr8_3:53194008-53194027 Msa1295150:intron 60.0%
TCTGGAAAGGGGAAGAGGCC+TGG + chr8_3:53192542-53192561 Msa1295150:CDS 60.0%
GGGAAGAGGCCTGGAAAAGG+TGG + chr8_3:53192551-53192570 Msa1295150:CDS 60.0%
ACCCCCAGAGAAGCCACTGA+AGG + chr8_3:53192611-53192630 Msa1295150:CDS 60.0%
GGCTAAGATACGACCCCGGA+TGG - chr8_3:53193595-53193614 None:intergenic 60.0%
GGCCACTCTCCAAGACTGTG+AGG + chr8_3:53194008-53194027 Msa1295150:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 53192235 53194340 53192235 ID=Msa1295150;Name=Msa1295150
chr8_3 mRNA 53192235 53194340 53192235 ID=Msa1295150-mRNA-1;Parent=Msa1295150;Name=Msa1295150-mRNA-1;_AED=0.12;_eAED=0.12;_QI=70|1|1|1|1|1|6|238|160
chr8_3 exon 53192235 53192316 53192235 ID=Msa1295150-mRNA-1:exon:15240;Parent=Msa1295150-mRNA-1
chr8_3 exon 53192401 53192441 53192401 ID=Msa1295150-mRNA-1:exon:15241;Parent=Msa1295150-mRNA-1
chr8_3 exon 53192532 53192632 53192532 ID=Msa1295150-mRNA-1:exon:15242;Parent=Msa1295150-mRNA-1
chr8_3 exon 53193550 53193694 53193550 ID=Msa1295150-mRNA-1:exon:15243;Parent=Msa1295150-mRNA-1
chr8_3 exon 53193793 53193882 53193793 ID=Msa1295150-mRNA-1:exon:15244;Parent=Msa1295150-mRNA-1
chr8_3 exon 53194009 53194340 53194009 ID=Msa1295150-mRNA-1:exon:15245;Parent=Msa1295150-mRNA-1
chr8_3 five_prime_UTR 53192235 53192304 53192235 ID=Msa1295150-mRNA-1:five_prime_utr;Parent=Msa1295150-mRNA-1
chr8_3 CDS 53192305 53192316 53192305 ID=Msa1295150-mRNA-1:cds;Parent=Msa1295150-mRNA-1
chr8_3 CDS 53192401 53192441 53192401 ID=Msa1295150-mRNA-1:cds;Parent=Msa1295150-mRNA-1
chr8_3 CDS 53192532 53192632 53192532 ID=Msa1295150-mRNA-1:cds;Parent=Msa1295150-mRNA-1
chr8_3 CDS 53193550 53193694 53193550 ID=Msa1295150-mRNA-1:cds;Parent=Msa1295150-mRNA-1
chr8_3 CDS 53193793 53193882 53193793 ID=Msa1295150-mRNA-1:cds;Parent=Msa1295150-mRNA-1
chr8_3 CDS 53194009 53194102 53194009 ID=Msa1295150-mRNA-1:cds;Parent=Msa1295150-mRNA-1
chr8_3 three_prime_UTR 53194103 53194340 53194103 ID=Msa1295150-mRNA-1:three_prime_utr;Parent=Msa1295150-mRNA-1
Gene Sequence

>Msa1295150

ATGGCTGAACAAACTGAGAAGGCTTTTCTCAAGCAACCCAAAGTGTTTCTATGTTCGAAGAAATCTGGAAAGGGGAAGAGGCCTGGAAAAGGTGGAAACCGCTTCTGGAAATCAGTTGGTCTTGGATTCAAGACCCCCAGAGAAGCCACTGAAGGAACCTACATTGACAAGAAGTGTCCATTCACCGGCAATGTTTCCATCCGGGGTCGTATCTTAGCCGGAACTTGCCATAGTGCTAAAATGAATAGAACTATTATTGTCAGGAGGAATTATCTTCACTTTATTAAGAAGTATCAGAGGTATGAGAAGAGGCATTCAAACATTCCAGCTCATGTCTCACCTTGCTTCCGTGTTAAGGAAGGAGATCATGTTATTATCGGACAATGCAGGCCACTCTCCAAGACTGTGAGGTTCAATGTGTTGAAAGTGATCCCAGCTGGATCATCTAGTGGTGCAGGAAAGAAGGCTTTTACTGGAATGTGA

Protein sequence

>Msa1295150

MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSVGLGFKTPREATEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAGKKAFTGM*