Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1208330 | sp|Q9ZRS8|RL37A_PSEMZ | 97.802 | 91 | 2 | 0 | 1 | 91 | 1 | 91 | 6.61e-60 | 180 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1208330 | M5WNW1 | 98.913 | 92 | 1 | 0 | 1 | 92 | 37 | 128 | 8.10e-60 | 188 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040220 | Msa1208330 | 0.805047 | 1.611533e-49 | -8.615850e-47 |
| Msa0087910 | Msa1208330 | 0.868830 | 4.876899e-66 | -8.615850e-47 |
| Msa0114600 | Msa1208330 | 0.834635 | 2.675054e-56 | -8.615850e-47 |
| Msa0602900 | Msa1208330 | 0.801952 | 7.063872e-49 | -8.615850e-47 |
| Msa0605890 | Msa1208330 | 0.853540 | 2.233346e-61 | -8.615850e-47 |
| Msa0643960 | Msa1208330 | 0.804807 | 1.809351e-49 | -8.615850e-47 |
| Msa0685470 | Msa1208330 | 0.820375 | 7.091139e-53 | -8.615850e-47 |
| Msa0694400 | Msa1208330 | 0.832976 | 6.951223e-56 | -8.615850e-47 |
| Msa0749000 | Msa1208330 | 0.861898 | 7.421774e-64 | -8.615850e-47 |
| Msa0796490 | Msa1208330 | 0.866907 | 2.022467e-65 | -8.615850e-47 |
| Msa0835190 | Msa1208330 | 0.812250 | 4.659272e-51 | -8.615850e-47 |
| Msa0128330 | Msa1208330 | 0.838127 | 3.458385e-57 | -8.615850e-47 |
| Msa0128750 | Msa1208330 | 0.810890 | 9.203984e-51 | -8.615850e-47 |
| Msa0134580 | Msa1208330 | 0.819241 | 1.287543e-52 | -8.615850e-47 |
| Msa0167860 | Msa1208330 | 0.836952 | 6.920629e-57 | -8.615850e-47 |
| Msa0174580 | Msa1208330 | 0.853432 | 2.399148e-61 | -8.615850e-47 |
| Msa0191550 | Msa1208330 | 0.811472 | 6.883254e-51 | -8.615850e-47 |
| Msa0194940 | Msa1208330 | 0.862728 | 4.126038e-64 | -8.615850e-47 |
| Msa0210330 | Msa1208330 | 0.813075 | 3.075483e-51 | -8.615850e-47 |
| Msa0217620 | Msa1208330 | 0.843694 | 1.197067e-58 | -8.615850e-47 |
| Msa0225350 | Msa1208330 | 0.824039 | 1.001770e-53 | -8.615850e-47 |
| Msa0235050 | Msa1208330 | 0.815046 | 1.129652e-51 | -8.615850e-47 |
| Msa0419710 | Msa1208330 | 0.839064 | 1.981059e-57 | -8.615850e-47 |
| Msa0426250 | Msa1208330 | 0.835234 | 1.889319e-56 | -8.615850e-47 |
| Msa0450150 | Msa1208330 | 0.836132 | 1.119290e-56 | -8.615850e-47 |
| Msa0468440 | Msa1208330 | 0.855239 | 7.207709e-62 | -8.615850e-47 |
| Msa0482560 | Msa1208330 | 0.815158 | 1.066736e-51 | -8.615850e-47 |
| Msa1004780 | Msa1208330 | 0.800227 | 1.590708e-48 | -8.615850e-47 |
| Msa1037290 | Msa1208330 | 0.816906 | 4.342260e-52 | -8.615850e-47 |
| Msa1040160 | Msa1208330 | 0.802588 | 5.225342e-49 | -8.615850e-47 |
| Msa1078870 | Msa1208330 | 0.855690 | 5.325959e-62 | -8.615850e-47 |
| Msa1078980 | Msa1208330 | 0.843887 | 1.063002e-58 | -8.615850e-47 |
| Msa1079910 | Msa1208330 | 0.816686 | 4.865863e-52 | -8.615850e-47 |
| Msa1079920 | Msa1208330 | 0.831264 | 1.841894e-55 | -8.615850e-47 |
| Msa0250870 | Msa1208330 | 0.806245 | 9.032868e-50 | -8.615850e-47 |
| Msa0277600 | Msa1208330 | 0.813121 | 3.005284e-51 | -8.615850e-47 |
| Msa0312210 | Msa1208330 | 0.803148 | 4.002632e-49 | -8.615850e-47 |
| Msa0313060 | Msa1208330 | 0.825000 | 5.950681e-54 | -8.615850e-47 |
| Msa0315430 | Msa1208330 | 0.862958 | 3.502935e-64 | -8.615850e-47 |
| Msa0341880 | Msa1208330 | 0.831925 | 1.265731e-55 | -8.615850e-47 |
| Msa1115510 | Msa1208330 | 0.861200 | 1.212573e-63 | -8.615850e-47 |
| Msa1124850 | Msa1208330 | 0.827272 | 1.714758e-54 | -8.615850e-47 |
| Msa1128120 | Msa1208330 | 0.802668 | 5.029070e-49 | -8.615850e-47 |
| Msa1147670 | Msa1208330 | 0.813710 | 2.230194e-51 | -8.615850e-47 |
| Msa1164150 | Msa1208330 | 0.832973 | 6.961255e-56 | -8.615850e-47 |
| Msa1167540 | Msa1208330 | 0.802385 | 5.753180e-49 | -8.615850e-47 |
| Msa1169180 | Msa1208330 | 0.854608 | 1.098845e-61 | -8.615850e-47 |
| Msa1180000 | Msa1208330 | 0.806282 | 8.874245e-50 | -8.615850e-47 |
| Msa1203560 | Msa1208330 | 0.813680 | 2.264539e-51 | -8.615850e-47 |
| Msa1208330 | Msa1255830 | 0.815370 | 9.573584e-52 | -8.615850e-47 |
| Msa1208330 | Msa1255850 | 0.825946 | 3.552607e-54 | -8.615850e-47 |
| Msa1208330 | Msa1256840 | 0.815922 | 7.213490e-52 | -8.615850e-47 |
| Msa1208330 | Msa1258540 | 0.839242 | 1.781821e-57 | -8.615850e-47 |
| Msa1208330 | Msa1270640 | 0.809415 | 1.913608e-50 | -8.615850e-47 |
| Msa1208330 | Msa1270710 | 0.805251 | 1.460613e-49 | -8.615850e-47 |
| Msa1208330 | Msa1295150 | 0.826075 | 3.309340e-54 | -8.615850e-47 |
| Msa1208330 | Msa1295170 | 0.812683 | 3.746619e-51 | -8.615850e-47 |
| Msa1208330 | Msa1311400 | 0.849950 | 2.327227e-60 | -8.615850e-47 |
| Msa1208330 | Msa1330730 | 0.913163 | 8.459392e-84 | -8.615850e-47 |
| Msa1208330 | Msa1341780 | 0.806114 | 9.625101e-50 | -8.615850e-47 |
| Msa1208330 | Msa1351020 | 0.802200 | 6.280940e-49 | -8.615850e-47 |
| Msa1208330 | Msa1368920 | 0.816775 | 4.646306e-52 | -8.615850e-47 |
| Msa1208330 | Msa1385480 | 0.843948 | 1.023290e-58 | -8.615850e-47 |
| Msa1208330 | Msa1397660 | 0.812030 | 5.204618e-51 | -8.615850e-47 |
| Msa1208330 | Msa1426120 | 0.844108 | 9.270618e-59 | -8.615850e-47 |
| Msa1208330 | Msa1463570 | 0.831632 | 1.495325e-55 | -8.615850e-47 |
| Msa0529900 | Msa1208330 | 0.843439 | 1.399962e-58 | -8.615850e-47 |
| Msa0547920 | Msa1208330 | 0.809376 | 1.950880e-50 | -8.615850e-47 |
| Msa0573550 | Msa1208330 | 0.842749 | 2.137847e-58 | -8.615850e-47 |
| Msa0902730 | Msa1208330 | 0.821176 | 4.640375e-53 | -8.615850e-47 |
| Msa0929700 | Msa1208330 | 0.815162 | 1.064677e-51 | -8.615850e-47 |
| Msa0978470 | Msa1208330 | 0.827487 | 1.522553e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1208330 | MtrunA17_Chr8g0336121 | 100.000 | 92 | 0 | 0 | 1 | 92 | 1 | 92 | 7.50e-63 | 185 |
| Msa1208330 | MtrunA17_Chr4g0055341 | 100.000 | 92 | 0 | 0 | 1 | 92 | 1 | 92 | 7.50e-63 | 185 |
| Msa1208330 | MtrunA17_Chr4g0057431 | 100.000 | 92 | 0 | 0 | 1 | 92 | 1 | 92 | 7.50e-63 | 185 |
| Msa1208330 | MtrunA17_Chr8g0336341 | 100.000 | 92 | 0 | 0 | 1 | 92 | 1 | 92 | 7.50e-63 | 185 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1208330 | AT3G10950.1 | 93.478 | 92 | 6 | 0 | 1 | 92 | 1 | 92 | 4.50e-59 | 176 |
| Msa1208330 | AT3G60245.1 | 92.308 | 91 | 7 | 0 | 1 | 91 | 1 | 91 | 8.73e-58 | 172 |
Find 40 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGGTACATTATAATATTT+TGG | 0.135695 | 8_1:+66365178 | Msa1208330:three_prime_UTR |
| AAGCATTGAAAGAATCTATT+AGG | 0.280966 | 8_1:-66365080 | None:intergenic |
| AGAGAAAGGCTGTAGGAATA+TGG | 0.316747 | 8_1:+66364671 | Msa1208330:CDS |
| CAGCTCTGCACAATCAATTA+AGG | 0.381104 | 8_1:+66365310 | Msa1208330:three_prime_UTR |
| GAGAAAGGCTGTAGGAATAT+GGG | 0.416937 | 8_1:+66364672 | Msa1208330:CDS |
| GAACAATCATGGTTCTGCTT+TGG | 0.422461 | 8_1:+66365266 | Msa1208330:three_prime_UTR |
| GCTGGCATCGTTGGCAAATA+CGG | 0.428463 | 8_1:+66363871 | Msa1208330:CDS |
| ATGATATTAGGTACCCGTTA+TGG | 0.441488 | 8_1:+66364448 | Msa1208330:intron |
| TTGTTCCCTCAGCCTCCTGA+TGG | 0.459104 | 8_1:-66364858 | None:intergenic |
| CTGCGTCTGCTGTGACTGTT+CGG | 0.466153 | 8_1:+66364831 | Msa1208330:CDS |
| ACGCAAACTAGCACCATAAC+GGG | 0.476774 | 8_1:-66364461 | None:intergenic |
| TGACTGTTCGGAGCACCATC+AGG | 0.483900 | 8_1:+66364843 | Msa1208330:CDS |
| AGCAGTATTCTATAATCAAA+AGG | 0.488401 | 8_1:-66365201 | None:intergenic |
| TCGTGATTCTGCTGAGGCCA+TGG | 0.495949 | 8_1:+66365160 | Msa1208330:three_prime_UTR |
| ACAAAGAAGGCTGGCATCGT+TGG | 0.496247 | 8_1:+66363862 | Msa1208330:CDS |
| GTGGAGTGGCAGCGGTGGAA+TGG | 0.496830 | 8_1:-66363659 | None:intergenic |
| ATCGAAGGATGTGTGAGCTA+TGG | 0.523123 | 8_1:-66363688 | None:intergenic |
| TACGCAAACTAGCACCATAA+CGG | 0.535734 | 8_1:-66364462 | None:intergenic |
| AGAAAGGCTGTAGGAATATG+GGG | 0.537082 | 8_1:+66364673 | Msa1208330:CDS |
| GGAGCACCATCAGGAGGCTG+AGG | 0.547327 | 8_1:+66364852 | Msa1208330:CDS |
| GTGGAGTGGAGTGGCAGCGG+TGG | 0.554478 | 8_1:-66363664 | None:intergenic |
| ACTGCTTAGTAGAACAATCA+TGG | 0.557531 | 8_1:+66365255 | Msa1208330:three_prime_UTR |
| GACTGCGGTAAAGTGAAAGC+AGG | 0.566191 | 8_1:+66364703 | Msa1208330:CDS |
| AGGTTGTTGCAGATAATGAA+AGG | 0.567069 | 8_1:-66365060 | None:intergenic |
| ACTAAGAGAACAAAGAAGGC+TGG | 0.571248 | 8_1:+66363853 | Msa1208330:CDS |
| GGAGTGGAGTGGAGTGGCAG+CGG | 0.573220 | 8_1:-66363667 | None:intergenic |
| TGTAGGAATATGGGGATGCA+AGG | 0.596749 | 8_1:+66364681 | Msa1208330:CDS |
| GCAGACTAAGAGAACAAAGA+AGG | 0.598781 | 8_1:+66363849 | Msa1208330:intron |
| CAAAATATTATAATGTACCA+TGG | 0.617361 | 8_1:-66365177 | None:intergenic |
| GTGTGAGCTATGGAGTGGAG+TGG | 0.620732 | 8_1:-66363678 | None:intergenic |
| GCAGTATGCTGTGAAGAGAA+AGG | 0.632531 | 8_1:+66364657 | Msa1208330:intron |
| TGCGGTAAAGTGAAAGCAGG+CGG | 0.647382 | 8_1:+66364706 | Msa1208330:CDS |
| CTGTTCGGAGCACCATCAGG+AGG | 0.656338 | 8_1:+66364846 | Msa1208330:CDS |
| GAGCACCATCAGGAGGCTGA+GGG | 0.662182 | 8_1:+66364853 | Msa1208330:CDS |
| GCTGTGAAGAGAAAGGCTGT+AGG | 0.663437 | 8_1:+66364664 | Msa1208330:CDS |
| AGCTATGGAGTGGAGTGGAG+TGG | 0.679244 | 8_1:-66363673 | None:intergenic |
| ATAATGAAAGGAAACAACAA+AGG | 0.683390 | 8_1:-66365048 | None:intergenic |
| ATCAAAACAAGATAAACACT+AGG | 0.701835 | 8_1:-66365123 | None:intergenic |
| ATATGGGGATGCAAGGACTG+CGG | 0.722475 | 8_1:+66364688 | Msa1208330:CDS |
| AGGATGTGTGAGCTATGGAG+TGG | 0.727679 | 8_1:-66363683 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTATTGTATGATATT+AGG | + | chr8_1:66364436-66364455 | Msa1208330:intron | 10.0% |
| !!! | TTATTTTATTGTATGATATT+AGG | + | chr8_1:66364436-66364455 | Msa1208330:intron | 10.0% |
| !!! | AATTTTCTTATTCTTTTTCT+CGG | + | chr8_1:66364747-66364766 | Msa1208330:intron | 15.0% |
| !!! | TTTTATTTTTCTATTCTGAA+AGG | + | chr8_1:66364772-66364791 | Msa1208330:intron | 15.0% |
| !!! | AATTTTCTTATTCTTTTTCT+CGG | + | chr8_1:66364747-66364766 | Msa1208330:intron | 15.0% |
| !!! | TTTTATTTTTCTATTCTGAA+AGG | + | chr8_1:66364772-66364791 | Msa1208330:intron | 15.0% |
| !!! | TTGAAAGAAATGTTTAGAAT+TGG | - | chr8_1:66363758-66363777 | None:intergenic | 20.0% |
| !! | AAGTACAGATTCAATATAAA+AGG | - | chr8_1:66363817-66363836 | None:intergenic | 20.0% |
| !! | ATCTAAATAATTATGCACAT+AGG | + | chr8_1:66364013-66364032 | Msa1208330:intron | 20.0% |
| !! | TTATTTATTTGCATAAGCTA+AGG | - | chr8_1:66364261-66364280 | None:intergenic | 20.0% |
| !!! | AATAAATAACCTTTTGTGTA+AGG | + | chr8_1:66364168-66364187 | Msa1208330:intron | 20.0% |
| !!! | AAATTTTTCTGTGAATTTTG+TGG | + | chr8_1:66364520-66364539 | Msa1208330:CDS | 20.0% |
| !!! | ATCAAATCATTTAGTTTACT+AGG | + | chr8_1:66364584-66364603 | Msa1208330:intron | 20.0% |
| !! | CAAAATATTATAATGTACCA+TGG | - | chr8_1:66365180-66365199 | None:intergenic | 20.0% |
| !!! | CATGGTACATTATAATATTT+TGG | + | chr8_1:66365178-66365197 | Msa1208330:three_prime_UTR | 20.0% |
| !!! | TTGAAAGAAATGTTTAGAAT+TGG | - | chr8_1:66363758-66363777 | None:intergenic | 20.0% |
| !! | AAGTACAGATTCAATATAAA+AGG | - | chr8_1:66363817-66363836 | None:intergenic | 20.0% |
| !! | ATCTAAATAATTATGCACAT+AGG | + | chr8_1:66364013-66364032 | Msa1208330:intron | 20.0% |
| !! | TTATTTATTTGCATAAGCTA+AGG | - | chr8_1:66364261-66364280 | None:intergenic | 20.0% |
| !!! | AATAAATAACCTTTTGTGTA+AGG | + | chr8_1:66364168-66364187 | Msa1208330:intron | 20.0% |
| !!! | AAATTTTTCTGTGAATTTTG+TGG | + | chr8_1:66364520-66364539 | Msa1208330:CDS | 20.0% |
| !!! | ATCAAATCATTTAGTTTACT+AGG | + | chr8_1:66364584-66364603 | Msa1208330:intron | 20.0% |
| !! | CAAAATATTATAATGTACCA+TGG | - | chr8_1:66365180-66365199 | None:intergenic | 20.0% |
| !!! | CATGGTACATTATAATATTT+TGG | + | chr8_1:66365178-66365197 | Msa1208330:three_prime_UTR | 20.0% |
| !! | AGAAATGTTTAGAATTGGAT+TGG | - | chr8_1:66363753-66363772 | None:intergenic | 25.0% |
| !! | AAATGTGGTTTAGTTTATGA+TGG | + | chr8_1:66363955-66363974 | Msa1208330:intron | 25.0% |
| ! | ATAATTATGCACATAGGTAT+AGG | + | chr8_1:66364019-66364038 | Msa1208330:intron | 25.0% |
| !! | TTCTAGGTGGTTTAATATTT+TGG | + | chr8_1:66364321-66364340 | Msa1208330:intron | 25.0% |
| !! | TCTAGGTGGTTTAATATTTT+GGG | + | chr8_1:66364322-66364341 | Msa1208330:intron | 25.0% |
| ! | ACAAATACAGTTCATGAATT+GGG | - | chr8_1:66364374-66364393 | None:intergenic | 25.0% |
| ! | TACAAATACAGTTCATGAAT+TGG | - | chr8_1:66364375-66364394 | None:intergenic | 25.0% |
| ! | ATAATGATAACAAAGTCATG+AGG | - | chr8_1:66364801-66364820 | None:intergenic | 25.0% |
| ! | ATAATGAAAGGAAACAACAA+AGG | - | chr8_1:66365051-66365070 | None:intergenic | 25.0% |
| !!! | AAGCATTGAAAGAATCTATT+AGG | - | chr8_1:66365083-66365102 | None:intergenic | 25.0% |
| ! | ATCAAAACAAGATAAACACT+AGG | - | chr8_1:66365126-66365145 | None:intergenic | 25.0% |
| ! | AGCAGTATTCTATAATCAAA+AGG | - | chr8_1:66365204-66365223 | None:intergenic | 25.0% |
| !! | CTTAGTATAACGATTTTGAA+GGG | + | chr8_1:66365222-66365241 | Msa1208330:three_prime_UTR | 25.0% |
| !! | AGAAATGTTTAGAATTGGAT+TGG | - | chr8_1:66363753-66363772 | None:intergenic | 25.0% |
| !! | AAATGTGGTTTAGTTTATGA+TGG | + | chr8_1:66363955-66363974 | Msa1208330:intron | 25.0% |
| ! | ATAATTATGCACATAGGTAT+AGG | + | chr8_1:66364019-66364038 | Msa1208330:intron | 25.0% |
| !! | TTCTAGGTGGTTTAATATTT+TGG | + | chr8_1:66364321-66364340 | Msa1208330:intron | 25.0% |
| !! | TCTAGGTGGTTTAATATTTT+GGG | + | chr8_1:66364322-66364341 | Msa1208330:intron | 25.0% |
| ! | ACAAATACAGTTCATGAATT+GGG | - | chr8_1:66364374-66364393 | None:intergenic | 25.0% |
| ! | TACAAATACAGTTCATGAAT+TGG | - | chr8_1:66364375-66364394 | None:intergenic | 25.0% |
| ! | ATAATGATAACAAAGTCATG+AGG | - | chr8_1:66364801-66364820 | None:intergenic | 25.0% |
| ! | ATAATGAAAGGAAACAACAA+AGG | - | chr8_1:66365051-66365070 | None:intergenic | 25.0% |
| !!! | AAGCATTGAAAGAATCTATT+AGG | - | chr8_1:66365083-66365102 | None:intergenic | 25.0% |
| ! | ATCAAAACAAGATAAACACT+AGG | - | chr8_1:66365126-66365145 | None:intergenic | 25.0% |
| ! | AGCAGTATTCTATAATCAAA+AGG | - | chr8_1:66365204-66365223 | None:intergenic | 25.0% |
| !! | CTTAGTATAACGATTTTGAA+GGG | + | chr8_1:66365222-66365241 | Msa1208330:three_prime_UTR | 25.0% |
| ! | TTTAGAATTGGATTGGATGA+TGG | - | chr8_1:66363746-66363765 | None:intergenic | 30.0% |
| GTTCTTCTATGTTGTAAATG+TGG | + | chr8_1:66363940-66363959 | Msa1208330:intron | 30.0% | |
| AAGGAATAAACCAATCGAAA+TGG | - | chr8_1:66364138-66364157 | None:intergenic | 30.0% | |
| CATATACTACCTTACACAAA+AGG | - | chr8_1:66364180-66364199 | None:intergenic | 30.0% | |
| ! | CTAGGTGGTTTAATATTTTG+GGG | + | chr8_1:66364323-66364342 | Msa1208330:intron | 30.0% |
| ! | TTTCTGTGAATTTTGTGGAA+AGG | + | chr8_1:66364525-66364544 | Msa1208330:CDS | 30.0% |
| !! | CAGAACTCAACATTTTGAAA+AGG | - | chr8_1:66364620-66364639 | None:intergenic | 30.0% |
| ! | GCTTAGTATAACGATTTTGA+AGG | + | chr8_1:66365221-66365240 | Msa1208330:three_prime_UTR | 30.0% |
| ! | TTTAGAATTGGATTGGATGA+TGG | - | chr8_1:66363746-66363765 | None:intergenic | 30.0% |
| GTTCTTCTATGTTGTAAATG+TGG | + | chr8_1:66363940-66363959 | Msa1208330:intron | 30.0% | |
| AAGGAATAAACCAATCGAAA+TGG | - | chr8_1:66364138-66364157 | None:intergenic | 30.0% | |
| CATATACTACCTTACACAAA+AGG | - | chr8_1:66364180-66364199 | None:intergenic | 30.0% | |
| ! | CTAGGTGGTTTAATATTTTG+GGG | + | chr8_1:66364323-66364342 | Msa1208330:intron | 30.0% |
| ! | TTTCTGTGAATTTTGTGGAA+AGG | + | chr8_1:66364525-66364544 | Msa1208330:CDS | 30.0% |
| !! | CAGAACTCAACATTTTGAAA+AGG | - | chr8_1:66364620-66364639 | None:intergenic | 30.0% |
| ! | GCTTAGTATAACGATTTTGA+AGG | + | chr8_1:66365221-66365240 | Msa1208330:three_prime_UTR | 30.0% |
| TCCTTCGATCTCTGTAAAAA+TGG | + | chr8_1:66363702-66363721 | Msa1208330:exon | 35.0% | |
| !! | ACCATTTTTACAGAGATCGA+AGG | - | chr8_1:66363706-66363725 | None:intergenic | 35.0% |
| TGCACATAGGTATAGGTATA+TGG | + | chr8_1:66364026-66364045 | Msa1208330:intron | 35.0% | |
| AACAACAGTTAATGTCACGT+GGG | - | chr8_1:66364091-66364110 | None:intergenic | 35.0% | |
| ACCTAGAATGTAACTACCTA+GGG | - | chr8_1:66364309-66364328 | None:intergenic | 35.0% | |
| TGAACTGTATTTGTAGAGCA+AGG | + | chr8_1:66364380-66364399 | Msa1208330:intron | 35.0% | |
| ATGATATTAGGTACCCGTTA+TGG | + | chr8_1:66364448-66364467 | Msa1208330:intron | 35.0% | |
| GCGTAAGCAGATTAAAAAGA+TGG | + | chr8_1:66364480-66364499 | Msa1208330:CDS | 35.0% | |
| AGGTTGTTGCAGATAATGAA+AGG | - | chr8_1:66365063-66365082 | None:intergenic | 35.0% | |
| ! | TTTTATTCGTGATTCTGCTG+AGG | + | chr8_1:66365154-66365173 | Msa1208330:three_prime_UTR | 35.0% |
| ACTGCTTAGTAGAACAATCA+TGG | + | chr8_1:66365255-66365274 | Msa1208330:three_prime_UTR | 35.0% | |
| TCCTTCGATCTCTGTAAAAA+TGG | + | chr8_1:66363702-66363721 | Msa1208330:exon | 35.0% | |
| !! | ACCATTTTTACAGAGATCGA+AGG | - | chr8_1:66363706-66363725 | None:intergenic | 35.0% |
| TGCACATAGGTATAGGTATA+TGG | + | chr8_1:66364026-66364045 | Msa1208330:intron | 35.0% | |
| AACAACAGTTAATGTCACGT+GGG | - | chr8_1:66364091-66364110 | None:intergenic | 35.0% | |
| ACCTAGAATGTAACTACCTA+GGG | - | chr8_1:66364309-66364328 | None:intergenic | 35.0% | |
| TGAACTGTATTTGTAGAGCA+AGG | + | chr8_1:66364380-66364399 | Msa1208330:intron | 35.0% | |
| ATGATATTAGGTACCCGTTA+TGG | + | chr8_1:66364448-66364467 | Msa1208330:intron | 35.0% | |
| GCGTAAGCAGATTAAAAAGA+TGG | + | chr8_1:66364480-66364499 | Msa1208330:CDS | 35.0% | |
| AGGTTGTTGCAGATAATGAA+AGG | - | chr8_1:66365063-66365082 | None:intergenic | 35.0% | |
| ! | TTTTATTCGTGATTCTGCTG+AGG | + | chr8_1:66365154-66365173 | Msa1208330:three_prime_UTR | 35.0% |
| ACTGCTTAGTAGAACAATCA+TGG | + | chr8_1:66365255-66365274 | Msa1208330:three_prime_UTR | 35.0% | |
| !! | ATTGGATTGGATGATGGAGA+AGG | - | chr8_1:66363740-66363759 | None:intergenic | 40.0% |
| GCAGACTAAGAGAACAAAGA+AGG | + | chr8_1:66363849-66363868 | Msa1208330:intron | 40.0% | |
| ACTAAGAGAACAAAGAAGGC+TGG | + | chr8_1:66363853-66363872 | Msa1208330:CDS | 40.0% | |
| CAACAACAGTTAATGTCACG+TGG | - | chr8_1:66364092-66364111 | None:intergenic | 40.0% | |
| TGTATAGCGACCATTTCGAT+TGG | + | chr8_1:66364125-66364144 | Msa1208330:intron | 40.0% | |
| CTTCATAAGCCAATCCAAAC+AGG | + | chr8_1:66364283-66364302 | Msa1208330:intron | 40.0% | |
| CACCTAGAATGTAACTACCT+AGG | - | chr8_1:66364310-66364329 | None:intergenic | 40.0% | |
| CTAGGTAGTTACATTCTAGG+TGG | + | chr8_1:66364308-66364327 | Msa1208330:intron | 40.0% | |
| TACGCAAACTAGCACCATAA+CGG | - | chr8_1:66364465-66364484 | None:intergenic | 40.0% | |
| AGAGAAAGGCTGTAGGAATA+TGG | + | chr8_1:66364671-66364690 | Msa1208330:CDS | 40.0% | |
| GAGAAAGGCTGTAGGAATAT+GGG | + | chr8_1:66364672-66364691 | Msa1208330:CDS | 40.0% | |
| AGAAAGGCTGTAGGAATATG+GGG | + | chr8_1:66364673-66364692 | Msa1208330:CDS | 40.0% | |
| ! | GAACAATCATGGTTCTGCTT+TGG | + | chr8_1:66365266-66365285 | Msa1208330:three_prime_UTR | 40.0% |
| CAGCTCTGCACAATCAATTA+AGG | + | chr8_1:66365310-66365329 | Msa1208330:three_prime_UTR | 40.0% | |
| !! | ATTGGATTGGATGATGGAGA+AGG | - | chr8_1:66363740-66363759 | None:intergenic | 40.0% |
| GCAGACTAAGAGAACAAAGA+AGG | + | chr8_1:66363849-66363868 | Msa1208330:intron | 40.0% | |
| ACTAAGAGAACAAAGAAGGC+TGG | + | chr8_1:66363853-66363872 | Msa1208330:CDS | 40.0% | |
| CAACAACAGTTAATGTCACG+TGG | - | chr8_1:66364092-66364111 | None:intergenic | 40.0% | |
| TGTATAGCGACCATTTCGAT+TGG | + | chr8_1:66364125-66364144 | Msa1208330:intron | 40.0% | |
| CTTCATAAGCCAATCCAAAC+AGG | + | chr8_1:66364283-66364302 | Msa1208330:intron | 40.0% | |
| CACCTAGAATGTAACTACCT+AGG | - | chr8_1:66364310-66364329 | None:intergenic | 40.0% | |
| CTAGGTAGTTACATTCTAGG+TGG | + | chr8_1:66364308-66364327 | Msa1208330:intron | 40.0% | |
| TACGCAAACTAGCACCATAA+CGG | - | chr8_1:66364465-66364484 | None:intergenic | 40.0% | |
| AGAGAAAGGCTGTAGGAATA+TGG | + | chr8_1:66364671-66364690 | Msa1208330:CDS | 40.0% | |
| GAGAAAGGCTGTAGGAATAT+GGG | + | chr8_1:66364672-66364691 | Msa1208330:CDS | 40.0% | |
| AGAAAGGCTGTAGGAATATG+GGG | + | chr8_1:66364673-66364692 | Msa1208330:CDS | 40.0% | |
| ! | GAACAATCATGGTTCTGCTT+TGG | + | chr8_1:66365266-66365285 | Msa1208330:three_prime_UTR | 40.0% |
| ATCGAAGGATGTGTGAGCTA+TGG | - | chr8_1:66363691-66363710 | None:intergenic | 45.0% | |
| CAGTTAATGTCACGTGGGTT+CGG | - | chr8_1:66364086-66364105 | None:intergenic | 45.0% | |
| GCCCTAGGTAGTTACATTCT+AGG | + | chr8_1:66364305-66364324 | Msa1208330:intron | 45.0% | |
| ACGCAAACTAGCACCATAAC+GGG | - | chr8_1:66364464-66364483 | None:intergenic | 45.0% | |
| GCAGTATGCTGTGAAGAGAA+AGG | + | chr8_1:66364657-66364676 | Msa1208330:intron | 45.0% | |
| TGTAGGAATATGGGGATGCA+AGG | + | chr8_1:66364681-66364700 | Msa1208330:CDS | 45.0% | |
| ATCGAAGGATGTGTGAGCTA+TGG | - | chr8_1:66363691-66363710 | None:intergenic | 45.0% | |
| CAGTTAATGTCACGTGGGTT+CGG | - | chr8_1:66364086-66364105 | None:intergenic | 45.0% | |
| GCCCTAGGTAGTTACATTCT+AGG | + | chr8_1:66364305-66364324 | Msa1208330:intron | 45.0% | |
| ACGCAAACTAGCACCATAAC+GGG | - | chr8_1:66364464-66364483 | None:intergenic | 45.0% | |
| GCAGTATGCTGTGAAGAGAA+AGG | + | chr8_1:66364657-66364676 | Msa1208330:intron | 45.0% | |
| TGTAGGAATATGGGGATGCA+AGG | + | chr8_1:66364681-66364700 | Msa1208330:CDS | 45.0% | |
| AGGATGTGTGAGCTATGGAG+TGG | - | chr8_1:66363686-66363705 | None:intergenic | 50.0% | |
| ACAAAGAAGGCTGGCATCGT+TGG | + | chr8_1:66363862-66363881 | Msa1208330:CDS | 50.0% | |
| GCTGGCATCGTTGGCAAATA+CGG | + | chr8_1:66363871-66363890 | Msa1208330:CDS | 50.0% | |
| TACCTAGGGCCTGTTTGGAT+TGG | - | chr8_1:66364295-66364314 | None:intergenic | 50.0% | |
| GTAACTACCTAGGGCCTGTT+TGG | - | chr8_1:66364300-66364319 | None:intergenic | 50.0% | |
| GCTGTGAAGAGAAAGGCTGT+AGG | + | chr8_1:66364664-66364683 | Msa1208330:CDS | 50.0% | |
| ATATGGGGATGCAAGGACTG+CGG | + | chr8_1:66364688-66364707 | Msa1208330:CDS | 50.0% | |
| GACTGCGGTAAAGTGAAAGC+AGG | + | chr8_1:66364703-66364722 | Msa1208330:CDS | 50.0% | |
| TGCGGTAAAGTGAAAGCAGG+CGG | + | chr8_1:66364706-66364725 | Msa1208330:CDS | 50.0% | |
| AGGATGTGTGAGCTATGGAG+TGG | - | chr8_1:66363686-66363705 | None:intergenic | 50.0% | |
| ACAAAGAAGGCTGGCATCGT+TGG | + | chr8_1:66363862-66363881 | Msa1208330:CDS | 50.0% | |
| GCTGGCATCGTTGGCAAATA+CGG | + | chr8_1:66363871-66363890 | Msa1208330:CDS | 50.0% | |
| TACCTAGGGCCTGTTTGGAT+TGG | - | chr8_1:66364295-66364314 | None:intergenic | 50.0% | |
| GTAACTACCTAGGGCCTGTT+TGG | - | chr8_1:66364300-66364319 | None:intergenic | 50.0% | |
| GCTGTGAAGAGAAAGGCTGT+AGG | + | chr8_1:66364664-66364683 | Msa1208330:CDS | 50.0% | |
| ATATGGGGATGCAAGGACTG+CGG | + | chr8_1:66364688-66364707 | Msa1208330:CDS | 50.0% | |
| GACTGCGGTAAAGTGAAAGC+AGG | + | chr8_1:66364703-66364722 | Msa1208330:CDS | 50.0% | |
| TGCGGTAAAGTGAAAGCAGG+CGG | + | chr8_1:66364706-66364725 | Msa1208330:CDS | 50.0% | |
| AGCTATGGAGTGGAGTGGAG+TGG | - | chr8_1:66363676-66363695 | None:intergenic | 55.0% | |
| GTGTGAGCTATGGAGTGGAG+TGG | - | chr8_1:66363681-66363700 | None:intergenic | 55.0% | |
| AGCCAATCCAAACAGGCCCT+AGG | + | chr8_1:66364290-66364309 | Msa1208330:intron | 55.0% | |
| CTGCGTCTGCTGTGACTGTT+CGG | + | chr8_1:66364831-66364850 | Msa1208330:CDS | 55.0% | |
| ! | TGACTGTTCGGAGCACCATC+AGG | + | chr8_1:66364843-66364862 | Msa1208330:CDS | 55.0% |
| TTGTTCCCTCAGCCTCCTGA+TGG | - | chr8_1:66364861-66364880 | None:intergenic | 55.0% | |
| TCGTGATTCTGCTGAGGCCA+TGG | + | chr8_1:66365160-66365179 | Msa1208330:three_prime_UTR | 55.0% | |
| AGCTATGGAGTGGAGTGGAG+TGG | - | chr8_1:66363676-66363695 | None:intergenic | 55.0% | |
| GTGTGAGCTATGGAGTGGAG+TGG | - | chr8_1:66363681-66363700 | None:intergenic | 55.0% | |
| AGCCAATCCAAACAGGCCCT+AGG | + | chr8_1:66364290-66364309 | Msa1208330:intron | 55.0% | |
| CTGCGTCTGCTGTGACTGTT+CGG | + | chr8_1:66364831-66364850 | Msa1208330:CDS | 55.0% | |
| ! | TGACTGTTCGGAGCACCATC+AGG | + | chr8_1:66364843-66364862 | Msa1208330:CDS | 55.0% |
| TTGTTCCCTCAGCCTCCTGA+TGG | - | chr8_1:66364861-66364880 | None:intergenic | 55.0% | |
| TCGTGATTCTGCTGAGGCCA+TGG | + | chr8_1:66365160-66365179 | Msa1208330:three_prime_UTR | 55.0% | |
| ! | CTGTTCGGAGCACCATCAGG+AGG | + | chr8_1:66364846-66364865 | Msa1208330:CDS | 60.0% |
| GAGCACCATCAGGAGGCTGA+GGG | + | chr8_1:66364853-66364872 | Msa1208330:CDS | 60.0% | |
| ! | CTGTTCGGAGCACCATCAGG+AGG | + | chr8_1:66364846-66364865 | Msa1208330:CDS | 60.0% |
| GAGCACCATCAGGAGGCTGA+GGG | + | chr8_1:66364853-66364872 | Msa1208330:CDS | 60.0% | |
| GTGGAGTGGCAGCGGTGGAA+TGG | - | chr8_1:66363662-66363681 | None:intergenic | 65.0% | |
| GGAGTGGAGTGGAGTGGCAG+CGG | - | chr8_1:66363670-66363689 | None:intergenic | 65.0% | |
| ! | GGAGCACCATCAGGAGGCTG+AGG | + | chr8_1:66364852-66364871 | Msa1208330:CDS | 65.0% |
| GTGGAGTGGCAGCGGTGGAA+TGG | - | chr8_1:66363662-66363681 | None:intergenic | 65.0% | |
| GGAGTGGAGTGGAGTGGCAG+CGG | - | chr8_1:66363670-66363689 | None:intergenic | 65.0% | |
| ! | GGAGCACCATCAGGAGGCTG+AGG | + | chr8_1:66364852-66364871 | Msa1208330:CDS | 65.0% |
| GTGGAGTGGAGTGGCAGCGG+TGG | - | chr8_1:66363667-66363686 | None:intergenic | 70.0% | |
| GTGGAGTGGAGTGGCAGCGG+TGG | - | chr8_1:66363667-66363686 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 66363650 | 66365332 | 66363650 | ID=Msa1208330;Name=Msa1208330 |
| chr8_1 | mRNA | 66363650 | 66365332 | 66363650 | ID=Msa1208330-mRNA-1;Parent=Msa1208330;Name=Msa1208330-mRNA-1;_AED=0.40;_eAED=0.40;_QI=71|1|1|1|1|1|5|440|92 |
| chr8_1 | exon | 66363650 | 66363723 | 66363650 | ID=Msa1208330-mRNA-1:exon:21813;Parent=Msa1208330-mRNA-1 |
| chr8_1 | exon | 66363853 | 66363892 | 66363853 | ID=Msa1208330-mRNA-1:exon:21814;Parent=Msa1208330-mRNA-1 |
| chr8_1 | exon | 66364458 | 66364546 | 66364458 | ID=Msa1208330-mRNA-1:exon:21815;Parent=Msa1208330-mRNA-1 |
| chr8_1 | exon | 66364661 | 66364743 | 66364661 | ID=Msa1208330-mRNA-1:exon:21816;Parent=Msa1208330-mRNA-1 |
| chr8_1 | exon | 66364829 | 66365332 | 66364829 | ID=Msa1208330-mRNA-1:exon:21817;Parent=Msa1208330-mRNA-1 |
| chr8_1 | five_prime_UTR | 66363650 | 66363720 | 66363650 | ID=Msa1208330-mRNA-1:five_prime_utr;Parent=Msa1208330-mRNA-1 |
| chr8_1 | CDS | 66363721 | 66363723 | 66363721 | ID=Msa1208330-mRNA-1:cds;Parent=Msa1208330-mRNA-1 |
| chr8_1 | CDS | 66363853 | 66363892 | 66363853 | ID=Msa1208330-mRNA-1:cds;Parent=Msa1208330-mRNA-1 |
| chr8_1 | CDS | 66364458 | 66364546 | 66364458 | ID=Msa1208330-mRNA-1:cds;Parent=Msa1208330-mRNA-1 |
| chr8_1 | CDS | 66364661 | 66364743 | 66364661 | ID=Msa1208330-mRNA-1:cds;Parent=Msa1208330-mRNA-1 |
| chr8_1 | CDS | 66364829 | 66364892 | 66364829 | ID=Msa1208330-mRNA-1:cds;Parent=Msa1208330-mRNA-1 |
| chr8_1 | three_prime_UTR | 66364893 | 66365332 | 66364893 | ID=Msa1208330-mRNA-1:three_prime_utr;Parent=Msa1208330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
