AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0057840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0057840 MtrunA17_Chr1g0156321 95.597 863 35 2 1 863 1 860 0.0 1703
Msa0057840 MtrunA17_Chr1g0156301 87.633 283 19 1 581 863 1 267 6.94e-175 505
Msa0057840 MtrunA17_Chr2g0285461 67.847 367 114 3 35 398 15 380 4.79e-168 511
Msa0057840 MtrunA17_Chr5g0433301 68.120 367 113 3 35 398 16 381 6.32e-168 509
Msa0057840 MtrunA17_Chr5g0433301 41.060 151 71 3 730 862 670 820 8.71e-26 114
Msa0057840 MtrunA17_Chr4g0070181 72.886 343 90 3 35 376 15 355 1.75e-167 516
Msa0057840 MtrunA17_Chr4g0070181 39.631 217 120 4 634 849 880 1086 5.94e-34 140
Msa0057840 MtrunA17_Chr3g0109391 68.219 365 112 3 37 398 20 383 4.41e-167 507
Msa0057840 MtrunA17_Chr3g0109391 42.763 152 84 2 712 862 679 828 2.69e-27 119
Msa0057840 MtrunA17_Chr2g0301251 71.137 343 96 3 35 376 15 355 1.35e-163 506
Msa0057840 MtrunA17_Chr2g0301251 60.952 105 41 0 745 849 974 1078 8.98e-33 137
Msa0057840 MtrunA17_Chr8g0376771 66.757 367 117 4 35 398 15 379 7.83e-161 493
Msa0057840 MtrunA17_Chr8g0376771 50.806 124 61 0 739 862 763 886 7.07e-31 130
Msa0057840 MtrunA17_Chr8g0389081 68.047 338 107 1 40 376 29 366 1.01e-149 469
Msa0057840 MtrunA17_Chr8g0389081 39.806 206 100 6 649 849 891 1077 3.89e-34 141
Msa0057840 MtrunA17_Chr8g0385791 53.687 339 154 3 39 376 55 391 1.59e-118 379
Msa0057840 MtrunA17_Chr8g0385791 42.857 91 50 2 757 846 710 799 3.71e-15 80.1
Msa0057840 MtrunA17_Chr2g0276781 53.846 338 154 2 39 376 19 354 1.74e-118 374
Msa0057840 MtrunA17_Chr2g0276781 48.387 93 44 3 756 846 546 636 6.62e-18 88.6
Msa0057840 MtrunA17_Chr8g0346711 51.009 347 165 4 31 376 16 358 2.34e-111 356
Msa0057840 MtrunA17_Chr8g0346711 41.593 113 57 4 747 855 545 652 9.75e-16 81.6
Msa0057840 MtrunA17_Chr2g0326281 50.275 364 153 7 43 381 56 416 1.15e-107 350
Msa0057840 MtrunA17_Chr2g0326281 42.308 104 58 2 757 859 695 797 4.16e-18 89.7
Msa0057840 MtrunA17_Chr2g0282961 50.867 346 147 6 43 376 53 387 5.64e-106 340
Msa0057840 MtrunA17_Chr4g0029671 51.156 346 154 7 43 376 54 396 2.65e-105 343
Msa0057840 MtrunA17_Chr4g0029671 45.055 91 48 2 757 846 663 752 2.04e-18 90.5
Msa0057840 MtrunA17_Chr4g0046371 47.721 373 157 8 43 393 38 394 4.20e-104 337
Msa0057840 MtrunA17_Chr4g0009751 50.877 342 153 7 41 376 17 349 1.14e-103 334
Msa0057840 MtrunA17_Chr7g0239061 47.384 344 174 5 35 376 6 344 4.21e-100 326
Msa0057840 MtrunA17_Chr7g0239061 42.857 91 49 2 757 846 570 658 1.10e-14 78.2
Msa0057840 MtrunA17_Chr1g0181211 37.984 387 187 6 36 376 20 399 4.01e-79 270
Msa0057840 MtrunA17_Chr2g0326761 40.741 378 177 8 38 376 6 375 4.24e-79 270
Msa0057840 MtrunA17_Chr4g0028971 40.365 384 172 8 40 376 9 382 4.47e-77 265
Msa0057840 MtrunA17_Chr1g0199681 38.191 398 196 10 38 394 89 477 5.76e-76 261
Msa0057840 MtrunA17_Chr7g0264171 35.437 412 191 10 36 385 24 422 3.63e-71 246
Msa0057840 MtrunA17_Chr3g0115271 36.951 387 200 7 39 387 15 395 2.33e-66 232
Msa0057840 MtrunA17_Chr7g0264161 38.339 313 173 6 52 356 1 301 2.97e-66 223
Msa0057840 MtrunA17_Chr5g0424931 34.688 369 196 10 38 376 14 367 6.92e-57 204
Msa0057840 MtrunA17_Chr5g0417281 32.644 435 246 15 37 457 5 406 8.47e-57 204
Msa0057840 MtrunA17_Chr8g0356211 42.667 225 121 4 154 376 2 220 3.87e-54 190
Msa0057840 MtrunA17_Chr5g0436761 34.037 379 212 13 38 394 7 369 1.63e-53 193
Msa0057840 MtrunA17_Chr1g0178011 32.153 367 221 10 38 394 7 355 1.35e-49 182
Msa0057840 MtrunA17_Chr2g0289221 35.650 331 167 14 43 356 20 321 7.38e-45 166
Msa0057840 MtrunA17_Chr2g0277461 33.333 339 206 10 43 376 13 336 3.64e-43 163
Msa0057840 MtrunA17_Chr5g0417211 32.622 328 186 11 40 355 9 313 3.88e-40 153
Msa0057840 MtrunA17_Chr5g0424741 31.658 398 212 16 38 396 7 383 1.37e-38 151
Msa0057840 MtrunA17_Chr2g0277531 29.755 326 196 12 40 356 17 318 8.91e-37 141
Msa0057840 MtrunA17_Chr5g0424801 29.107 347 216 10 40 376 9 335 2.70e-33 132
Msa0057840 MtrunA17_Chr1g0156311 61.475 122 14 3 264 385 1 89 7.60e-33 122
Msa0057840 MtrunA17_Chr5g0425261 29.107 347 216 10 40 376 9 335 2.56e-32 129
Msa0057840 MtrunA17_Chr5g0425661 34.300 207 127 4 39 242 33 233 3.20e-32 125
Msa0057840 MtrunA17_Chr5g0424791 28.082 146 97 2 97 242 14 151 1.43e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0057840 AT1G19850.1 59.730 889 288 21 19 862 32 895 0.0 972
Msa0057840 AT1G19850.2 59.730 889 288 21 19 862 21 884 0.0 972
Msa0057840 AT1G30330.1 67.925 371 115 3 31 398 11 380 9.09e-168 511
Msa0057840 AT1G30330.1 51.667 120 58 0 737 856 774 893 4.26e-31 132
Msa0057840 AT1G30330.3 67.655 371 116 3 31 398 13 382 7.78e-167 509
Msa0057840 AT1G30330.3 51.667 120 58 0 737 856 776 895 4.23e-31 132
Msa0057840 AT1G30330.2 67.655 371 116 3 31 398 13 382 7.78e-167 509
Msa0057840 AT1G30330.2 51.667 120 58 0 737 856 776 895 4.23e-31 132
Msa0057840 AT1G19220.1 68.365 373 110 5 35 403 15 383 1.05e-165 511
Msa0057840 AT1G19220.1 44.578 166 84 4 687 849 890 1050 4.54e-32 135
Msa0057840 AT5G37020.2 66.846 371 118 4 31 398 11 379 2.82e-165 500
Msa0057840 AT5G37020.2 53.623 69 32 0 757 825 705 773 8.06e-18 89.0
Msa0057840 AT5G37020.1 66.846 371 118 4 31 398 11 379 1.39e-164 499
Msa0057840 AT5G37020.1 51.613 93 45 0 757 849 705 797 2.17e-24 110
Msa0057840 AT5G20730.2 70.262 343 99 3 35 376 16 356 3.04e-158 493
Msa0057840 AT5G20730.2 59.406 101 41 0 749 849 1029 1129 1.99e-31 133
Msa0057840 AT5G20730.3 70.058 344 99 4 35 376 16 357 8.84e-157 489
Msa0057840 AT5G20730.3 59.406 101 41 0 749 849 1030 1130 1.81e-31 133
Msa0057840 AT5G20730.1 70.058 344 99 4 35 376 16 357 1.96e-156 488
Msa0057840 AT5G20730.1 59.406 101 41 0 749 849 1030 1130 2.06e-31 133
Msa0057840 AT5G62000.2 56.140 342 141 4 39 376 57 393 3.84e-123 392
Msa0057840 AT5G62000.2 37.931 145 79 4 706 845 683 821 2.37e-18 90.9
Msa0057840 AT5G62000.5 56.140 342 141 4 39 376 57 393 3.84e-123 392
Msa0057840 AT5G62000.5 37.931 145 79 4 706 845 683 821 2.37e-18 90.9
Msa0057840 AT5G62000.3 56.140 342 141 4 39 376 57 393 3.84e-123 392
Msa0057840 AT5G62000.3 37.931 145 79 4 706 845 683 821 2.37e-18 90.9
Msa0057840 AT5G62000.1 56.140 342 141 4 39 376 57 393 3.84e-123 392
Msa0057840 AT5G62000.1 37.931 145 79 4 706 845 683 821 2.37e-18 90.9
Msa0057840 AT5G62000.4 56.140 342 141 4 39 376 57 393 5.27e-123 392
Msa0057840 AT5G62000.4 35.838 173 88 6 706 861 683 849 1.07e-18 92.0
Msa0057840 AT5G37020.3 65.614 285 94 3 117 398 1 284 7.53e-118 374
Msa0057840 AT5G37020.3 51.613 93 45 0 757 849 610 702 1.36e-24 110
Msa0057840 AT1G59750.4 53.216 342 150 4 39 376 18 353 3.02e-115 366
Msa0057840 AT1G59750.4 48.039 102 49 3 756 855 536 635 6.16e-19 92.4
Msa0057840 AT1G59750.2 53.216 342 150 4 39 376 18 353 3.65e-115 366
Msa0057840 AT1G59750.2 48.039 102 49 3 756 855 538 637 5.87e-19 92.4
Msa0057840 AT1G59750.1 53.216 342 150 4 39 376 18 353 3.80e-115 366
Msa0057840 AT1G59750.1 48.039 102 49 3 756 855 541 640 5.81e-19 92.4
Msa0057840 AT1G59750.3 53.216 342 150 4 39 376 18 353 3.80e-115 366
Msa0057840 AT1G59750.3 48.039 102 49 3 756 855 541 640 5.81e-19 92.4
Msa0057840 AT2G46530.1 51.429 350 162 6 40 386 18 362 1.87e-111 354
Msa0057840 AT2G46530.1 40.000 95 54 2 757 850 490 582 1.80e-14 77.8
Msa0057840 AT2G46530.3 51.429 350 162 6 40 386 39 383 4.07e-111 354
Msa0057840 AT2G46530.3 40.000 95 54 2 757 850 511 603 2.28e-14 77.8
Msa0057840 AT3G61830.1 52.212 339 154 6 40 376 22 354 9.70e-110 350
Msa0057840 AT3G61830.1 46.739 92 44 3 757 846 489 577 7.72e-15 79.0
Msa0057840 AT5G60450.2 50.838 358 161 7 35 381 33 386 3.37e-108 350
Msa0057840 AT5G60450.2 38.835 103 61 2 757 858 641 742 1.62e-16 84.7
Msa0057840 AT5G60450.1 51.275 353 157 7 40 381 62 410 1.75e-107 349
Msa0057840 AT5G60450.1 38.835 103 61 2 757 858 665 766 1.78e-16 84.7
Msa0057840 AT4G23980.2 52.326 344 147 6 40 376 9 342 2.16e-107 344
Msa0057840 AT4G23980.2 46.154 91 46 2 757 846 521 609 2.13e-15 80.9
Msa0057840 AT4G23980.1 52.326 344 147 6 40 376 9 342 2.53e-107 344
Msa0057840 AT4G23980.1 46.154 91 46 2 757 846 523 611 2.22e-15 80.9
Msa0057840 AT2G33860.1 49.284 349 158 4 43 381 54 393 3.80e-103 332
Msa0057840 AT3G61830.2 51.623 308 141 6 71 376 2 303 2.57e-94 307
Msa0057840 AT3G61830.2 46.739 92 44 3 757 846 438 526 5.98e-15 79.3
Msa0057840 AT1G34410.1 44.737 342 181 5 35 376 19 352 4.72e-93 305
Msa0057840 AT1G34410.1 40.909 88 49 2 757 843 511 596 4.12e-12 70.5
Msa0057840 AT1G35540.1 43.860 342 184 6 35 376 19 352 7.83e-91 300
Msa0057840 AT1G35540.1 40.000 90 51 2 757 845 510 597 1.78e-12 71.6
Msa0057840 AT1G35240.1 43.567 342 185 5 35 376 19 352 8.85e-90 296
Msa0057840 AT1G35240.1 42.045 88 48 2 757 843 497 582 2.83e-12 70.9
Msa0057840 AT1G35520.1 44.611 334 177 6 43 376 27 352 4.54e-88 292
Msa0057840 AT1G35520.1 40.741 81 45 2 757 836 511 589 2.45e-11 67.8
Msa0057840 AT1G34310.1 43.567 342 185 6 35 376 19 352 4.19e-87 289
Msa0057840 AT1G34310.1 39.506 81 46 2 757 836 511 589 6.11e-11 66.6
Msa0057840 AT1G34390.1 44.737 342 179 7 35 376 19 350 2.71e-85 285
Msa0057840 AT1G34170.1 41.071 336 188 6 43 376 25 352 1.00e-80 270
Msa0057840 AT2G46530.2 50.545 275 128 6 116 386 5 275 2.21e-78 263
Msa0057840 AT2G46530.2 40.000 95 54 2 757 850 403 495 1.07e-14 78.2
Msa0057840 AT2G33860.2 54.661 236 106 1 146 381 2 236 6.29e-78 260
Msa0057840 AT2G28350.2 38.760 387 179 8 38 376 5 381 1.80e-77 265
Msa0057840 AT2G28350.1 38.760 387 179 8 38 376 5 381 3.40e-77 265
Msa0057840 AT4G30080.1 39.043 397 188 11 35 389 11 395 5.68e-77 264
Msa0057840 AT1G34170.2 38.988 336 169 5 43 376 25 326 2.88e-74 251
Msa0057840 AT1G34170.3 38.988 336 169 5 43 376 25 326 2.90e-73 250
Msa0057840 AT1G77850.1 36.170 376 191 9 38 376 14 377 3.81e-60 215
Msa0057840 AT1G77850.2 36.170 376 191 9 38 376 14 377 4.19e-60 215
Msa0057840 AT1G43950.1 44.076 211 111 5 35 245 19 222 1.15e-47 169
Msa0057840 AT3G61970.1 32.558 129 81 3 122 246 1 127 9.90e-11 64.3

Find 199 sgRNAs with CRISPR-Local

Find 357 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACAATGAATGCATGTTAA+AGG 0.173174 1_2:+14034310 None:intergenic
CTTCTTATTCTGCAGATATA+TGG 0.173372 1_2:-14035048 Msa0057840:intron
GCCGTTGCAATCCGGATATT+TGG 0.177793 1_2:-14034692 Msa0057840:CDS
AAATACAGAAAATCTGTTTA+TGG 0.194457 1_2:-14035217 Msa0057840:CDS
GGAAAGATGAAAAGGCTTTC+TGG 0.205659 1_2:+14034739 None:intergenic
CATAATTATCCCACACTTCT+TGG 0.212825 1_2:+14033904 None:intergenic
AGACATTAAATTCAGAATTA+TGG 0.240617 1_2:-14037217 Msa0057840:CDS
TTAGAACCAGGCCACCTTAA+AGG 0.260988 1_2:+14034996 None:intergenic
AGCAAAATCGGGTTAGTGTT+TGG 0.286566 1_2:-14034774 Msa0057840:CDS
CTTTCAGCTGGCATGAGATT+TGG 0.299456 1_2:-14035187 Msa0057840:CDS
GAACTATAATGACCTTCATT+TGG 0.311687 1_2:-14032896 Msa0057840:three_prime_UTR
TCTTCACTTCCTATTGGCTT+TGG 0.314981 1_2:+14032624 None:intergenic
TTGTTGCATGATAGGTAAAA+AGG 0.323540 1_2:+14034436 None:intergenic
CGCGCAATTGAATGCATGTT+TGG 0.329869 1_2:-14033328 Msa0057840:CDS
TGGGAATGGGATCGGAATAT+TGG 0.330913 1_2:-14032876 Msa0057840:three_prime_UTR
TTCTAAGTGGCGAAATATTC+AGG 0.333372 1_2:-14034979 Msa0057840:intron
TTCGTCTAATAGTGGATTAA+TGG 0.335254 1_2:-14032683 Msa0057840:three_prime_UTR
TTCTTATTCTGCAGATATAT+GGG 0.354261 1_2:-14035047 Msa0057840:intron
TGAGCAAAAGTCGTCGAAAA+TGG 0.355292 1_2:+14033761 None:intergenic
AACTATAATGACCTTCATTT+GGG 0.356327 1_2:-14032895 Msa0057840:three_prime_UTR
ATTGAATCTTCGTCTAATAG+TGG 0.360283 1_2:-14032691 Msa0057840:three_prime_UTR
GTGGATTAATGGCAAAGATT+TGG 0.360595 1_2:-14032672 Msa0057840:three_prime_UTR
CCGTTGCAATCCGGATATTT+GGG 0.360826 1_2:-14034691 Msa0057840:intron
TGCATGTTAAAGGTGTTATT+AGG 0.363217 1_2:+14034320 None:intergenic
GCAAAATCGGGTTAGTGTTT+GGG 0.363557 1_2:-14034773 Msa0057840:CDS
TGCTAGTTGGAGATGATCCT+TGG 0.365242 1_2:-14033231 Msa0057840:CDS
CAATACTACATTACAAGTTA+AGG 0.370100 1_2:+14032759 None:intergenic
GATGGAAGACTAGGGTAGTT+TGG 0.373410 1_2:+14036895 None:intergenic
GCATAATCTTGTTGCATGAT+AGG 0.375254 1_2:+14034428 None:intergenic
AATACAGAAAATCTGTTTAT+GGG 0.375476 1_2:-14035216 Msa0057840:CDS
GTTTGTTTGTCGGCTCAAAA+AGG 0.375508 1_2:-14035837 Msa0057840:CDS
GCTGTTTACAATAGAAGAAT+CGG 0.384358 1_2:+14034013 None:intergenic
TTTGATTATAATATGTTAGT+TGG 0.389191 1_2:+14034147 None:intergenic
TCTAATCTGTCATAAACTAA+TGG 0.393236 1_2:+14032817 None:intergenic
GTGTTTCCGGTATCTGAGTT+TGG 0.395238 1_2:-14036568 Msa0057840:CDS
TTGTAAATAAACAGGCTGAA+TGG 0.397672 1_2:-14034819 Msa0057840:intron
CACACTTCTTGGTTCATTGA+AGG 0.399760 1_2:+14033915 None:intergenic
GTGCTTGAAAGGTGAACTTT+CGG 0.411398 1_2:+14034353 None:intergenic
GTTAAAGAGATGAGTGAAGA+AGG 0.411917 1_2:-14033013 Msa0057840:CDS
TATGGACCAAACAAACCTTC+AGG 0.413743 1_2:-14032849 Msa0057840:three_prime_UTR
CATGGCTTCCTTAGAAGAAA+AGG 0.416918 1_2:-14037458 Msa0057840:CDS
TGTAAATAAACAGGCTGAAT+GGG 0.419597 1_2:-14034818 Msa0057840:intron
TTCTGCAGAATAATAACTCT+TGG 0.422237 1_2:-14033563 Msa0057840:CDS
AATGACCTTCATTTGGGAAT+GGG 0.422824 1_2:-14032889 Msa0057840:three_prime_UTR
GATCGGAATATTGGTAGATA+TGG 0.423094 1_2:-14032867 Msa0057840:three_prime_UTR
GTAGAGTAAACTTTAGTTGT+TGG 0.424339 1_2:+14032649 None:intergenic
TCAGTGATGTCGATCCTTTA+AGG 0.425306 1_2:-14035010 Msa0057840:CDS
CTGAATGACACAAAAGGTTC+CGG 0.425971 1_2:-14033292 Msa0057840:CDS
ATGTTACCTTTGTGTAGGTT+CGG 0.426676 1_2:+14033520 None:intergenic
CACCCTCAAGATTGCATGGT+TGG 0.430745 1_2:-14033717 Msa0057840:CDS
GATGTTTGAGACCGAGGAAT+CGG 0.432905 1_2:-14035161 Msa0057840:CDS
GAACAACTAGTTCTTGAGTT+GGG 0.432917 1_2:+14036322 None:intergenic
GGTGTGGTGATAAGCAAAAT+CGG 0.435666 1_2:-14034786 Msa0057840:CDS
GTCGATCCTTTAAGGTGGCC+TGG 0.437670 1_2:-14035002 Msa0057840:CDS
CTTGTGTCATTGCCTCAAGT+GGG 0.444777 1_2:-14037176 Msa0057840:CDS
TGGCAACTTAAGTTCTAGTC+AGG 0.445947 1_2:-14033697 Msa0057840:CDS
TATTTGCAGGGCATGTCCTT+CGG 0.447302 1_2:-14035260 Msa0057840:intron
CTAAAACGGCCGTTGCAATC+CGG 0.447348 1_2:-14034700 Msa0057840:CDS
CTTTGACTTCAAGCCTAAAA+CGG 0.447527 1_2:-14034714 Msa0057840:CDS
CTCATCTCTTTAACTTCTGA+AGG 0.449266 1_2:+14033022 None:intergenic
GATCTTGTGTAGGGAATTTG+TGG 0.451328 1_2:-14033074 Msa0057840:intron
ATTGTTGAAAAGTGAGCATC+CGG 0.452172 1_2:-14034294 Msa0057840:CDS
CGCAATTGCGAGTTGGTGTA+AGG 0.454613 1_2:-14035496 Msa0057840:CDS
GGAAAAGCTGTTTCCTCCAT+TGG 0.458270 1_2:-14036446 Msa0057840:intron
ACTCTACAACCAAAGCCAAT+AGG 0.459069 1_2:-14032633 Msa0057840:three_prime_UTR
TAATGACCTTCATTTGGGAA+TGG 0.461550 1_2:-14032890 Msa0057840:three_prime_UTR
AGATATATGGGTACAATTGT+AGG 0.463723 1_2:-14035035 Msa0057840:CDS
TGCTTACAGAATTCAGTGGT+TGG 0.464019 1_2:+14036700 None:intergenic
TATGGGACTCACCTTTCAGC+TGG 0.465604 1_2:-14035199 Msa0057840:CDS
AAAAGTGTTGGAGGAGTTGT+TGG 0.469435 1_2:-14037433 Msa0057840:CDS
GAATTATGGCATGCTTGTGC+TGG 0.470225 1_2:-14037203 Msa0057840:CDS
GCTAGTTGGAGATGATCCTT+GGG 0.470617 1_2:-14033230 Msa0057840:CDS
TCAAAGAAGGAAAGATGAAA+AGG 0.471141 1_2:+14034731 None:intergenic
TTTAGTCCAAACTCAGATAC+CGG 0.471165 1_2:+14036562 None:intergenic
TTTAGGCTTGAAGTCAAAGA+AGG 0.471500 1_2:+14034718 None:intergenic
ATTAAAGTACCCGAAAATGA+AGG 0.474465 1_2:-14034551 Msa0057840:CDS
TTGTTGCTGCTTTCAAAAGA+TGG 0.474837 1_2:+14034194 None:intergenic
CATTGACACAAATTTCACTT+TGG 0.474844 1_2:+14033838 None:intergenic
CCTGTTCACTATGTCCTTGA+GGG 0.475837 1_2:+14037135 None:intergenic
AAGAAACGTACCCAAATATC+CGG 0.476983 1_2:+14034681 None:intergenic
GAGAGTGATGTTCTGCTAGT+TGG 0.482377 1_2:-14033244 Msa0057840:CDS
TAATAGTGTCAGTACCACTA+TGG 0.485813 1_2:-14033805 Msa0057840:CDS
TCTTGTGTCATTGCCTCAAG+TGG 0.485817 1_2:-14037177 Msa0057840:CDS
CCCTCAAGGACATAGTGAAC+AGG 0.486634 1_2:-14037135 Msa0057840:intron
AAGAGACACCTTCTCACAAC+GGG 0.488034 1_2:-14035865 Msa0057840:CDS
ACGGGTTGGAGTTTGTTTGT+CGG 0.492443 1_2:-14035847 Msa0057840:CDS
TCTAACTGAGGCTGCTGCAT+TGG 0.492863 1_2:+14034077 None:intergenic
GAAGAAAAGGCTAAAAGTGT+TGG 0.493255 1_2:-14037445 Msa0057840:CDS
ACCTTTGTGTAGGTTCGGAT+TGG 0.493613 1_2:+14033525 None:intergenic
CCATTGTTGTTGATCACTTG+TGG 0.494094 1_2:+14034461 None:intergenic
AAAATGGTGTTTGAAGTAGA+AGG 0.495433 1_2:+14033777 None:intergenic
GGGAAGTCAAACATATGATC+AGG 0.498477 1_2:+14034215 None:intergenic
GAAAAGGCTAAAAGTGTTGG+AGG 0.498865 1_2:-14037442 Msa0057840:CDS
ATGTTTGAGACCGAGGAATC+GGG 0.501076 1_2:-14035160 Msa0057840:CDS
AGAGTTGTCTCGCAGAGAAA+AGG 0.502279 1_2:+14033629 None:intergenic
CAGGCTGAATGGGATGAGCC+AGG 0.504340 1_2:-14034808 Msa0057840:CDS
ATCTTGTGTAGGGAATTTGT+GGG 0.505590 1_2:-14033073 Msa0057840:intron
AACAACTAGTTCTTGAGTTG+GGG 0.512403 1_2:+14036323 None:intergenic
CTGTTTACAATAGAAGAATC+GGG 0.516285 1_2:+14034014 None:intergenic
CTCAGATAGACGTGGACGAA+TGG 0.517978 1_2:-14033983 Msa0057840:CDS
TACGTATACTAGTTTCCATC+CGG 0.523910 1_2:+14033273 None:intergenic
TGTGTCATTGCCTCAAGTGG+GGG 0.524294 1_2:-14037174 Msa0057840:CDS
CCTTCATTTGGGAATGGGAT+CGG 0.524562 1_2:-14032884 Msa0057840:three_prime_UTR
TTAAAGAGATGAGTGAAGAA+GGG 0.524881 1_2:-14033012 Msa0057840:CDS
TGCCAACCATGCAATCTTGA+GGG 0.526265 1_2:+14033715 None:intergenic
CCGAGGAATCGGGTAAGCGC+AGG 0.529760 1_2:-14035150 Msa0057840:intron
CCGATCCCATTCCCAAATGA+AGG 0.532615 1_2:+14032884 None:intergenic
GAGATTTGCATGATAATACA+TGG 0.533645 1_2:-14036299 Msa0057840:CDS
AGATAGTTGTGCTGTGAAAG+TGG 0.535520 1_2:-14037487 Msa0057840:five_prime_UTR
ATGGACCAAACAAACCTTCA+GGG 0.536935 1_2:-14032848 Msa0057840:three_prime_UTR
GAATGGGATGAGCCAGGGTG+TGG 0.543031 1_2:-14034802 Msa0057840:CDS
TTCGGTTCCACGCAGAGCTG+CGG 0.543545 1_2:-14036467 Msa0057840:CDS
CCTGCGCTTACCCGATTCCT+CGG 0.545092 1_2:+14035150 None:intergenic
TTGTGTCATTGCCTCAAGTG+GGG 0.545165 1_2:-14037175 Msa0057840:CDS
GTGTGGTGATAAGCAAAATC+GGG 0.545815 1_2:-14034785 Msa0057840:CDS
CGAACAACTAGTTCTTGAGT+TGG 0.551901 1_2:+14036321 None:intergenic
TGATGAGTGGTTTCACTCAA+AGG 0.555163 1_2:-14037960 Msa0057840:intron
TCAGCACCCTCAAGATTGCA+TGG 0.555417 1_2:-14033721 Msa0057840:CDS
GTATGCTCTCTGTGCTTGAA+AGG 0.557270 1_2:+14034342 None:intergenic
TGGTATGATGTTTGAGACCG+AGG 0.557923 1_2:-14035167 Msa0057840:CDS
TGGAGCATGTCAATCATTTG+AGG 0.562075 1_2:+14034038 None:intergenic
ACCTGTTCACTATGTCCTTG+AGG 0.562382 1_2:+14037134 None:intergenic
TTCAATGAACCAAGAAGTGT+GGG 0.563061 1_2:-14033913 Msa0057840:CDS
TAGCAGAAGTAATCTGAGAC+TGG 0.563668 1_2:+14033670 None:intergenic
TCAGCAGAAAGTACTGATGA+TGG 0.564399 1_2:+14035446 None:intergenic
AACAACTGAGATGGAAGACT+AGG 0.565825 1_2:+14036886 None:intergenic
CAAATCTCATGCCAGCTGAA+AGG 0.565921 1_2:+14035188 None:intergenic
TGTGGACTTCATATCTTGCA+AGG 0.568033 1_2:+14034391 None:intergenic
CTGAACAGCGGAGCATTGCA+AGG 0.572206 1_2:-14032980 Msa0057840:CDS
TGGTTCATTGAAGGTATCGA+GGG 0.572733 1_2:+14033924 None:intergenic
AACTCCAACCCGTTGTGAGA+AGG 0.573060 1_2:+14035857 None:intergenic
AAATAATGTTACCTTTGTGT+AGG 0.573136 1_2:+14033515 None:intergenic
TCAGAGTGTGATGTGATGAG+TGG 0.573357 1_2:-14037973 Msa0057840:five_prime_UTR
GTTGTGAGAAGGTGTCTCTT+CGG 0.575157 1_2:+14035868 None:intergenic
AATTGAATGCATGTTTGGAC+TGG 0.576611 1_2:-14033323 Msa0057840:CDS
CTTGTCTATTACTTCCCTCA+AGG 0.578102 1_2:-14037149 Msa0057840:CDS
GGATTGTAGAAAATCGTGAA+TGG 0.579311 1_2:+14035368 None:intergenic
CTATGATGCAGAAAATGAGT+GGG 0.579800 1_2:-14034597 Msa0057840:intron
TTGCCAACCATGCAATCTTG+AGG 0.582580 1_2:+14033714 None:intergenic
CTTCAATGAACCAAGAAGTG+TGG 0.584734 1_2:-14033914 Msa0057840:CDS
TAAGGTGGCCTGGTTCTAAG+TGG 0.586460 1_2:-14034992 Msa0057840:CDS
ATATTTCGCCACTTAGAACC+AGG 0.586883 1_2:+14034984 None:intergenic
GAACTAGTATGAGCGAGTAA+TGG 0.586998 1_2:+14034104 None:intergenic
GACACCTTCTCACAACGGGT+TGG 0.588416 1_2:-14035861 Msa0057840:CDS
CTATATAGCCTTACCAATGG+AGG 0.589175 1_2:+14036433 None:intergenic
GGGTAAGAAACTTACTCCCA+AGG 0.591071 1_2:+14033214 None:intergenic
ACTTGACACAACAACTGAGA+TGG 0.591159 1_2:+14036877 None:intergenic
GTGTCATTGCCTCAAGTGGG+GGG 0.591608 1_2:-14037173 Msa0057840:CDS
ATCGAGGGATTCACTACTTG+AGG 0.592078 1_2:+14033939 None:intergenic
TCGATTAGCAGCTGCATGAG+CGG 0.593060 1_2:+14035394 None:intergenic
CCCAAATATCCGGATTGCAA+CGG 0.593442 1_2:+14034691 None:intergenic
AACTTAAGTTCTAGTCAGGA+TGG 0.595500 1_2:-14033693 Msa0057840:CDS
TTACAATAGAAGAATCGGGT+TGG 0.596283 1_2:+14034018 None:intergenic
TTGGTTCATTGAAGGTATCG+AGG 0.596449 1_2:+14033923 None:intergenic
AGTGTTGGAGGAGTTGTTGG+TGG 0.597797 1_2:-14037430 Msa0057840:CDS
GAATGCATGTTTGGACTGGA+TGG 0.602337 1_2:-14033319 Msa0057840:CDS
TAATTCAAAATTAGAATCTG+AGG 0.603151 1_2:-14034243 Msa0057840:CDS
AGGCTGAATGGGATGAGCCA+GGG 0.604797 1_2:-14034807 Msa0057840:CDS
TGTTGCTGCTTTCAAAAGAT+GGG 0.606362 1_2:+14034195 None:intergenic
GAGAAGTCGCAATTGCGAGT+TGG 0.609632 1_2:-14035503 Msa0057840:CDS
CTGTGAAAGTGGAACAAACA+TGG 0.610081 1_2:-14037476 Msa0057840:exon
CATTCGTCCACGTCTATCTG+AGG 0.610226 1_2:+14033984 None:intergenic
ACAACTAGTTCTTGAGTTGG+GGG 0.617960 1_2:+14036324 None:intergenic
GGTCTGCTGAATGACACAAA+AGG 0.627098 1_2:-14033298 Msa0057840:CDS
ATGACACAAAAGGTTCCGGA+TGG 0.629064 1_2:-14033288 Msa0057840:CDS
TACTTTCATCAAAATCAACA+TGG 0.633033 1_2:+14033589 None:intergenic
AAAGAAATGCAAGAACATTG+TGG 0.633626 1_2:-14037376 Msa0057840:intron
CGGATTCTCTATAACCTGTG+TGG 0.635978 1_2:+14034373 None:intergenic
TGGACCAAACAAACCTTCAG+GGG 0.636992 1_2:-14032847 Msa0057840:three_prime_UTR
ACAACTGAGATGGAAGACTA+GGG 0.639765 1_2:+14036887 None:intergenic
CCACAAGTGATCAACAACAA+TGG 0.640294 1_2:-14034461 Msa0057840:CDS
ACTTGAGGCAATGACACAAG+AGG 0.641095 1_2:+14037179 None:intergenic
GTGGACTTCATATCTTGCAA+GGG 0.645449 1_2:+14034392 None:intergenic
ATATTGCTTACAGAATTCAG+TGG 0.653769 1_2:+14036696 None:intergenic
GCGAGTGATACTAGCACACA+TGG 0.654643 1_2:-14036496 Msa0057840:CDS
GACATTGATGATTCTAACTG+AGG 0.657820 1_2:+14034065 None:intergenic
TCTCTGCGAGACAACTCTGG+TGG 0.660933 1_2:-14033624 Msa0057840:CDS
AGTAGAAGGATCAACCATAG+TGG 0.662515 1_2:+14033791 None:intergenic
ACCCGAAAATGAAGGAACAG+TGG 0.665241 1_2:-14034543 Msa0057840:CDS
CTTGAGGCAATGACACAAGA+GGG 0.667127 1_2:+14037180 None:intergenic
CAAACATGCATTCAATTGCG+CGG 0.668814 1_2:+14033329 None:intergenic
GGGATGAAGCTTCTGAACAG+CGG 0.672458 1_2:-14032992 Msa0057840:CDS
CATGATTCCTCAGATAGACG+TGG 0.673580 1_2:-14033991 Msa0057840:CDS
TGATTGTTCAATGAATCACA+AGG 0.676141 1_2:-14032789 Msa0057840:three_prime_UTR
GGACCAAACAAACCTTCAGG+GGG 0.676281 1_2:-14032846 Msa0057840:three_prime_UTR
TCTTGTGTAGGGAATTTGTG+GGG 0.680812 1_2:-14033072 Msa0057840:intron
TCTATGATGCAGAAAATGAG+TGG 0.683454 1_2:-14034598 Msa0057840:intron
GCAAGATATGAAGTCCACAC+AGG 0.685567 1_2:-14034387 Msa0057840:CDS
AGTGGAATAACAAAATCCGA+AGG 0.692028 1_2:+14035244 None:intergenic
GTGATGTCGATCCTTTAAGG+TGG 0.692501 1_2:-14035007 Msa0057840:CDS
AGGGTAGTTTGGAATCTGTG+AGG 0.694049 1_2:+14036906 None:intergenic
TCTGCTGATAGCATGCACAT+TGG 0.695779 1_2:-14035431 Msa0057840:CDS
TATGATGCAGAAAATGAGTG+GGG 0.696824 1_2:-14034596 Msa0057840:intron
GTGATAATATTCGTATACAG+CGG 0.703562 1_2:+14033044 None:intergenic
GAAGAGACACCTTCTCACAA+CGG 0.710470 1_2:-14035866 Msa0057840:CDS
ACCAATCCGAACCTACACAA+AGG 0.719172 1_2:-14033526 Msa0057840:intron
AGTGATACTAGCACACATGG+TGG 0.741127 1_2:-14036493 Msa0057840:CDS
ACATTTCGACATATCTACCG+AGG 0.754798 1_2:-14036276 Msa0057840:intron
GACCAAACAAACCTTCAGGG+GGG 0.757174 1_2:-14032845 Msa0057840:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTCTTAATTTTTACAA+TGG - chr1_2:14033364-14033383 Msa0057840:CDS 10.0%
!!! AAAGTTTTAATATCTAAAAA+GGG + chr1_2:14037589-14037608 None:intergenic 10.0%
!!! AAAAGTTTTAATATCTAAAA+AGG + chr1_2:14037590-14037609 None:intergenic 10.0%
!!! TTTTTAGATATTAAAACTTT+TGG - chr1_2:14037589-14037608 Msa0057840:intron 10.0%
!! AAAAATTAAGAAAAAAGAGA+AGG + chr1_2:14033360-14033379 None:intergenic 15.0%
!!! ATTTTGATTTGATTGATATT+TGG - chr1_2:14033428-14033447 Msa0057840:intron 15.0%
!! ATCAAAACATACAATTTAAA+GGG + chr1_2:14033931-14033950 None:intergenic 15.0%
!! TATCAAAACATACAATTTAA+AGG + chr1_2:14033932-14033951 None:intergenic 15.0%
!!! AAATTGTATGTTTTGATAAT+AGG - chr1_2:14033934-14033953 Msa0057840:CDS 15.0%
!!! CAATTTTTTCAGATTATTAT+CGG - chr1_2:14034554-14034573 Msa0057840:CDS 15.0%
!! ATCTAAAAATATTATATGTC+AGG + chr1_2:14035384-14035403 None:intergenic 15.0%
!! AAATTTCTTTGTAAATAAAC+AGG - chr1_2:14035870-14035889 Msa0057840:CDS 15.0%
!!! TAATTTTGAATTATTGGTTT+TGG + chr1_2:14036447-14036466 None:intergenic 15.0%
!!! AGATTCTAATTTTGAATTAT+TGG + chr1_2:14036453-14036472 None:intergenic 15.0%
!! TTTGATTATAATATGTTAGT+TGG + chr1_2:14036553-14036572 None:intergenic 15.0%
!!! TAAGTTTAATAGTCTTATTT+TGG - chr1_2:14037537-14037556 Msa0057840:intron 15.0%
!!! ATTAATGATGATGATCAAAA+TGG - chr1_2:14033017-14033036 Msa0057840:CDS 20.0%
!!! TTTACAATGGTTATGTTTTA+TGG - chr1_2:14033377-14033396 Msa0057840:CDS 20.0%
!!! GTTGTACTAATTTTTGTTTA+GGG - chr1_2:14033450-14033469 Msa0057840:intron 20.0%
!!! TTGTACTAATTTTTGTTTAG+GGG - chr1_2:14033451-14033470 Msa0057840:intron 20.0%
!! AGACATTAAATTCAGAATTA+TGG - chr1_2:14033480-14033499 Msa0057840:intron 20.0%
!!! ATTGTAGTTTTAAGTTTCTT+TGG - chr1_2:14033661-14033680 Msa0057840:CDS 20.0%
!! TCAAAACATACAATTTAAAG+GGG + chr1_2:14033930-14033949 None:intergenic 20.0%
!!! ATTTTCCATTAATTTGTGTT+AGG - chr1_2:14034098-14034117 Msa0057840:CDS 20.0%
!!! TTTTTCCTAACACAAATTAA+TGG + chr1_2:14034106-14034125 None:intergenic 20.0%
!! AAATTTAGGGAAAAAATGTA+AGG + chr1_2:14034795-14034814 None:intergenic 20.0%
!!! ATGTAATGGTTTTCAATATT+AGG - chr1_2:14035066-14035085 Msa0057840:intron 20.0%
!! TTTCAATATTAGGAAAATTG+TGG - chr1_2:14035076-14035095 Msa0057840:intron 20.0%
!! ATTTATGTAGAGATGATTAT+TGG + chr1_2:14035137-14035156 None:intergenic 20.0%
!!! AATATTTTTAGATCTAATCG+TGG - chr1_2:14035391-14035410 Msa0057840:CDS 20.0%
!!! ATAAACAGATTTTCTGTATT+TGG + chr1_2:14035481-14035500 None:intergenic 20.0%
!! AAATACAGAAAATCTGTTTA+TGG - chr1_2:14035480-14035499 Msa0057840:CDS 20.0%
!! AATACAGAAAATCTGTTTAT+GGG - chr1_2:14035481-14035500 Msa0057840:CDS 20.0%
!! AATGGTATATCTTAATAACT+GGG + chr1_2:14035763-14035782 None:intergenic 20.0%
!! CTTAATCTTAGTAATATAGT+CGG - chr1_2:14035840-14035859 Msa0057840:CDS 20.0%
!! TAATTCAAAATTAGAATCTG+AGG - chr1_2:14036454-14036473 Msa0057840:CDS 20.0%
!!! TAACATTATTTCTGTAATGT+TGG - chr1_2:14037194-14037213 Msa0057840:CDS 20.0%
! AAAAGGGTAGTACAAAATAA+GGG + chr1_2:14033044-14033063 None:intergenic 25.0%
! TTATTCCTCTTTATTGTGTT+TGG - chr1_2:14033155-14033174 Msa0057840:intron 25.0%
!!! GGTTGTACTAATTTTTGTTT+AGG - chr1_2:14033449-14033468 Msa0057840:intron 25.0%
!!! AGATTCTAGTTTCTATTGAA+TGG - chr1_2:14033696-14033715 Msa0057840:CDS 25.0%
! TTTGTACATCTGAATGTTAT+TGG - chr1_2:14034053-14034072 Msa0057840:CDS 25.0%
! AAAACACACTAATCAAATGA+GGG + chr1_2:14034330-14034349 None:intergenic 25.0%
!!! TGTTTATTTTACCAAACCAA+TGG + chr1_2:14034638-14034657 None:intergenic 25.0%
!!! ATTGGTTTGGTAAAATAAAC+AGG - chr1_2:14034637-14034656 Msa0057840:intron 25.0%
! TAAACAGGAATAAATGTTTG+TGG - chr1_2:14034652-14034671 Msa0057840:intron 25.0%
! ACTGCAACTTTATTATTGTT+TGG - chr1_2:14034702-14034721 Msa0057840:CDS 25.0%
! CTGCAACTTTATTATTGTTT+GGG - chr1_2:14034703-14034722 Msa0057840:CDS 25.0%
!! ACCTTCAAAATAATTAGTCT+TGG - chr1_2:14034748-14034767 Msa0057840:CDS 25.0%
!!! TCCAAGACTAATTATTTTGA+AGG + chr1_2:14034752-14034771 None:intergenic 25.0%
!! TTTCCCTAAATTTTTCATGT+AGG - chr1_2:14034802-14034821 Msa0057840:CDS 25.0%
! TGACCTACATGAAAAATTTA+GGG + chr1_2:14034808-14034827 None:intergenic 25.0%
! CTCTGTTATTATCTGAATAT+AGG - chr1_2:14034966-14034985 Msa0057840:intron 25.0%
! ATTACATTGCAATGTAACTA+TGG + chr1_2:14035053-14035072 None:intergenic 25.0%
! ATAGTTACATTGCAATGTAA+TGG - chr1_2:14035052-14035071 Msa0057840:intron 25.0%
! AAAATAACAAGTTGCTAATC+AGG + chr1_2:14035105-14035124 None:intergenic 25.0%
! TGATGTGTTAATTGTTACAA+GGG - chr1_2:14035169-14035188 Msa0057840:CDS 25.0%
! AAACATATTTAGGTATACCT+TGG + chr1_2:14035353-14035372 None:intergenic 25.0%
! AAAATATTATATGTCAGGTG+AGG + chr1_2:14035379-14035398 None:intergenic 25.0%
! TCAACTATTATAGTTAGTTC+AGG + chr1_2:14035620-14035639 None:intergenic 25.0%
! TTCTTATTCTGCAGATATAT+GGG - chr1_2:14035650-14035669 Msa0057840:intron 25.0%
! ATGGTATATCTTAATAACTG+GGG + chr1_2:14035762-14035781 None:intergenic 25.0%
! GAATGGTATATCTTAATAAC+TGG + chr1_2:14035764-14035783 None:intergenic 25.0%
! CTATAAAACATACTCTATGT+TGG - chr1_2:14035815-14035834 Msa0057840:CDS 25.0%
! CGACTATATTACTAAGATTA+AGG + chr1_2:14035842-14035861 None:intergenic 25.0%
!!! AAGTACAAGACATTTTGATA+AGG + chr1_2:14036057-14036076 None:intergenic 25.0%
!!! TTTTCGGGTACTTTAATAAA+GGG + chr1_2:14036143-14036162 None:intergenic 25.0%
!!! ATTTTCGGGTACTTTAATAA+AGG + chr1_2:14036144-14036163 None:intergenic 25.0%
! CAACATTGAAAAAGTGAATA+CGG - chr1_2:14036523-14036542 Msa0057840:CDS 25.0%
!!! ATGTGAAGAATTTTAACTTG+AGG - chr1_2:14036813-14036832 Msa0057840:intron 25.0%
!!! TGTGAAGAATTTTAACTTGA+GGG - chr1_2:14036814-14036833 Msa0057840:intron 25.0%
! TACTTTCATCAAAATCAACA+TGG + chr1_2:14037111-14037130 None:intergenic 25.0%
! AAATAATGTTACCTTTGTGT+AGG + chr1_2:14037185-14037204 None:intergenic 25.0%
! TATACAAGATCGAAACAAAT+TGG + chr1_2:14037241-14037260 None:intergenic 25.0%
! AACTATAATGACCTTCATTT+GGG - chr1_2:14037802-14037821 Msa0057840:intron 25.0%
! TCTAATCTGTCATAAACTAA+TGG + chr1_2:14037883-14037902 None:intergenic 25.0%
! CAATACTACATTACAAGTTA+AGG + chr1_2:14037941-14037960 None:intergenic 25.0%
GGAACAAAAACTGCTAAAAA+AGG + chr1_2:14032908-14032927 None:intergenic 30.0%
ATGTGAAAAAGAGTGAACTA+AGG + chr1_2:14032929-14032948 None:intergenic 30.0%
!! TCACTCTTTTTCACATTACT+TGG - chr1_2:14032933-14032952 Msa0057840:three_prime_UTR 30.0%
CAAAAGGGTAGTACAAAATA+AGG + chr1_2:14033045-14033064 None:intergenic 30.0%
GAGAAGTAGAAGAAACAAAA+GGG + chr1_2:14033060-14033079 None:intergenic 30.0%
AGAGAAGTAGAAGAAACAAA+AGG + chr1_2:14033061-14033080 None:intergenic 30.0%
TCAAGTCAATGCAACTAAAT+GGG - chr1_2:14033084-14033103 Msa0057840:intron 30.0%
!!! GGTGGTAGTGTTTATTTTTT+TGG - chr1_2:14033106-14033125 Msa0057840:intron 30.0%
!! ACTTTTAGCCTTTTCTTCTA+AGG + chr1_2:14033250-14033269 None:intergenic 30.0%
AAAGAAATGCAAGAACATTG+TGG - chr1_2:14033321-14033340 Msa0057840:CDS 30.0%
! GTTTGTGTTTTGTCCTTTTA+AGG - chr1_2:14033741-14033760 Msa0057840:CDS 30.0%
ATATTGCTTACAGAATTCAG+TGG + chr1_2:14034004-14034023 None:intergenic 30.0%
!! TTAGGAAAAAGAAGTGTTTC+CGG - chr1_2:14034116-14034135 Msa0057840:CDS 30.0%
CAAAACACACTAATCAAATG+AGG + chr1_2:14034331-14034350 None:intergenic 30.0%
! CTCATTTGATTAGTGTGTTT+TGG - chr1_2:14034329-14034348 Msa0057840:CDS 30.0%
!!! GATTAGTGTGTTTTGGTTTT+AGG - chr1_2:14034336-14034355 Msa0057840:CDS 30.0%
GAGATTTGCATGATAATACA+TGG - chr1_2:14034398-14034417 Msa0057840:CDS 30.0%
! ACACCATTAATCTAAAGTGT+AGG + chr1_2:14034482-14034501 None:intergenic 30.0%
TTTCAGATTATTATCGGTGT+CGG - chr1_2:14034560-14034579 Msa0057840:CDS 30.0%
ATAGTTCAATCTATGTCCAT+TGG - chr1_2:14034619-14034638 Msa0057840:intron 30.0%
CTGACCTACATGAAAAATTT+AGG + chr1_2:14034809-14034828 None:intergenic 30.0%
ATGTAGAGATGATTATTGGT+TGG + chr1_2:14035133-14035152 None:intergenic 30.0%
GTGATGTGTTAATTGTTACA+AGG - chr1_2:14035168-14035187 Msa0057840:CDS 30.0%
GGTGAGGTATAAACATATTT+AGG + chr1_2:14035363-14035382 None:intergenic 30.0%
TTCTTGAGTGTATTATTTGC+AGG - chr1_2:14035424-14035443 Msa0057840:CDS 30.0%
TCTTGAGTGTATTATTTGCA+GGG - chr1_2:14035425-14035444 Msa0057840:CDS 30.0%
AAAACAGTTCAGAAGAATTC+AGG + chr1_2:14035579-14035598 None:intergenic 30.0%
CTTCTTATTCTGCAGATATA+TGG - chr1_2:14035649-14035668 Msa0057840:intron 30.0%
AGATATATGGGTACAATTGT+AGG - chr1_2:14035662-14035681 Msa0057840:intron 30.0%
TTGTAAATAAACAGGCTGAA+TGG - chr1_2:14035878-14035897 Msa0057840:intron 30.0%
TGTAAATAAACAGGCTGAAT+GGG - chr1_2:14035879-14035898 Msa0057840:intron 30.0%
TCAAAGAAGGAAAGATGAAA+AGG + chr1_2:14035969-14035988 None:intergenic 30.0%
!! ACAAGACATTTTGATAAGGT+GGG + chr1_2:14036053-14036072 None:intergenic 30.0%
!! TACAAGACATTTTGATAAGG+TGG + chr1_2:14036054-14036073 None:intergenic 30.0%
! ATTAAAGTACCCGAAAATGA+AGG - chr1_2:14036146-14036165 Msa0057840:intron 30.0%
! ATGTTTTCTTGGTAGAGATT+TGG + chr1_2:14036197-14036216 None:intergenic 30.0%
! ACATCTTCATCATGTTTTCT+TGG + chr1_2:14036208-14036227 None:intergenic 30.0%
TTGTTGCATGATAGGTAAAA+AGG + chr1_2:14036264-14036283 None:intergenic 30.0%
!! TGCATGTTAAAGGTGTTATT+AGG + chr1_2:14036380-14036399 None:intergenic 30.0%
CAACAATGAATGCATGTTAA+AGG + chr1_2:14036390-14036409 None:intergenic 30.0%
!!! ATGGATTTTGAGTTTGGTTT+TGG + chr1_2:14036577-14036596 None:intergenic 30.0%
CTGTTTACAATAGAAGAATC+GGG + chr1_2:14036686-14036705 None:intergenic 30.0%
GCTGTTTACAATAGAAGAAT+CGG + chr1_2:14036687-14036706 None:intergenic 30.0%
CATTGACACAAATTTCACTT+TGG + chr1_2:14036862-14036881 None:intergenic 30.0%
! AAAATGGTGTTTGAAGTAGA+AGG + chr1_2:14036923-14036942 None:intergenic 30.0%
TTCTGCAGAATAATAACTCT+TGG - chr1_2:14037134-14037153 Msa0057840:intron 30.0%
TTCGATCTTGTATATCATGA+TGG - chr1_2:14037247-14037266 Msa0057840:intron 30.0%
TCAAACATTACACGAAAGAA+GGG + chr1_2:14037506-14037525 None:intergenic 30.0%
ATCAAACATTACACGAAAGA+AGG + chr1_2:14037507-14037526 None:intergenic 30.0%
GTGATAATATTCGTATACAG+CGG + chr1_2:14037656-14037675 None:intergenic 30.0%
TTAAAGAGATGAGTGAAGAA+GGG - chr1_2:14037685-14037704 Msa0057840:intron 30.0%
GAACTATAATGACCTTCATT+TGG - chr1_2:14037801-14037820 Msa0057840:intron 30.0%
TGATTGTTCAATGAATCACA+AGG - chr1_2:14037908-14037927 Msa0057840:intron 30.0%
ATTGAATCTTCGTCTAATAG+TGG - chr1_2:14038006-14038025 Msa0057840:five_prime_UTR 30.0%
!! TTCGTCTAATAGTGGATTAA+TGG - chr1_2:14038014-14038033 Msa0057840:five_prime_UTR 30.0%
GTAGAGTAAACTTTAGTTGT+TGG + chr1_2:14038051-14038070 None:intergenic 30.0%
!!! CTTTTTTCTTCACTTCCTAT+TGG + chr1_2:14038082-14038101 None:intergenic 30.0%
CTCAAGTCAATGCAACTAAA+TGG - chr1_2:14033083-14033102 Msa0057840:intron 35.0%
CAAGTCAATGCAACTAAATG+GGG - chr1_2:14033085-14033104 Msa0057840:intron 35.0%
TTCCTCTTTATTGTGTTTGG+TGG - chr1_2:14033158-14033177 Msa0057840:intron 35.0%
! GAAGAAAAGGCTAAAAGTGT+TGG - chr1_2:14033252-14033271 Msa0057840:CDS 35.0%
TGAAATGCAACAGCAAAAAG+TGG + chr1_2:14033890-14033909 None:intergenic 35.0%
!! GTTTTGATAATAGGCTGACA+AGG - chr1_2:14033943-14033962 Msa0057840:CDS 35.0%
TTTAGTCCAAACTCAGATAC+CGG + chr1_2:14034138-14034157 None:intergenic 35.0%
! GTTTTGCAGAAAAACTCAGT+TGG + chr1_2:14034174-14034193 None:intergenic 35.0%
TAAGGCTATATAGCACTAGT+TGG - chr1_2:14034274-14034293 Msa0057840:CDS 35.0%
TCTTGTACAGCCATAAAAGA+GGG + chr1_2:14034306-14034325 None:intergenic 35.0%
TTCTTGTACAGCCATAAAAG+AGG + chr1_2:14034307-14034326 None:intergenic 35.0%
! AACAACTAGTTCTTGAGTTG+GGG + chr1_2:14034377-14034396 None:intergenic 35.0%
! GAACAACTAGTTCTTGAGTT+GGG + chr1_2:14034378-14034397 None:intergenic 35.0%
! TAATCTAAAGTGTAGGTGCT+AGG + chr1_2:14034475-14034494 None:intergenic 35.0%
GCACCTACACTTTAGATTAA+TGG - chr1_2:14034476-14034495 Msa0057840:CDS 35.0%
CTTTAGATTAATGGTGTGTC+CGG - chr1_2:14034485-14034504 Msa0057840:CDS 35.0%
! AACTATGTGTGTTTGAGATC+AGG + chr1_2:14034529-14034548 None:intergenic 35.0%
! TCAATCTATGTCCATTGGTT+TGG - chr1_2:14034624-14034643 Msa0057840:intron 35.0%
GGAATAAATGTTTGTGGTTG+TGG - chr1_2:14034658-14034677 Msa0057840:intron 35.0%
! GCGATTCTGTTCTTTTTATC+AGG - chr1_2:14034893-14034912 Msa0057840:intron 35.0%
ACAGAGTTTCGTATCATGTT+TGG + chr1_2:14034952-14034971 None:intergenic 35.0%
GGATTGTAGAAAATCGTGAA+TGG + chr1_2:14035332-14035351 None:intergenic 35.0%
! TCACGATTTTCTACAATCCA+AGG - chr1_2:14035333-14035352 Msa0057840:intron 35.0%
AGTGGAATAACAAAATCCGA+AGG + chr1_2:14035456-14035475 None:intergenic 35.0%
!!! TTCGGATTTTGTTATTCCAC+TGG - chr1_2:14035455-14035474 Msa0057840:CDS 35.0%
TTCTAAGTGGCGAAATATTC+AGG - chr1_2:14035718-14035737 Msa0057840:intron 35.0%
TTTAGGCTTGAAGTCAAAGA+AGG + chr1_2:14035982-14036001 None:intergenic 35.0%
! CTTTGACTTCAAGCCTAAAA+CGG - chr1_2:14035983-14036002 Msa0057840:intron 35.0%
AAGAAACGTACCCAAATATC+CGG + chr1_2:14036019-14036038 None:intergenic 35.0%
! TTGCTCACTAGTGGTTATTT+TGG - chr1_2:14036075-14036094 Msa0057840:intron 35.0%
TCTATGATGCAGAAAATGAG+TGG - chr1_2:14036099-14036118 Msa0057840:intron 35.0%
CTATGATGCAGAAAATGAGT+GGG - chr1_2:14036100-14036119 Msa0057840:intron 35.0%
TATGATGCAGAAAATGAGTG+GGG - chr1_2:14036101-14036120 Msa0057840:intron 35.0%
GCATAATCTTGTTGCATGAT+AGG + chr1_2:14036272-14036291 None:intergenic 35.0%
ATTGTTGAAAAGTGAGCATC+CGG - chr1_2:14036403-14036422 Msa0057840:intron 35.0%
!!! GAATTATTGGTTTTGGCGAT+AGG + chr1_2:14036440-14036459 None:intergenic 35.0%
!! TGTTGCTGCTTTCAAAAGAT+GGG + chr1_2:14036505-14036524 None:intergenic 35.0%
!! TTGTTGCTGCTTTCAAAAGA+TGG + chr1_2:14036506-14036525 None:intergenic 35.0%
!!! CGAGTAATGGATTTTGAGTT+TGG + chr1_2:14036583-14036602 None:intergenic 35.0%
! GACATTGATGATTCTAACTG+AGG + chr1_2:14036635-14036654 None:intergenic 35.0%
TTACAATAGAAGAATCGGGT+TGG + chr1_2:14036682-14036701 None:intergenic 35.0%
! TTCAATGAACCAAGAAGTGT+GGG - chr1_2:14036784-14036803 Msa0057840:intron 35.0%
CATAATTATCCCACACTTCT+TGG + chr1_2:14036796-14036815 None:intergenic 35.0%
TAATAGTGTCAGTACCACTA+TGG - chr1_2:14036892-14036911 Msa0057840:CDS 35.0%
! AACTTAAGTTCTAGTCAGGA+TGG - chr1_2:14037004-14037023 Msa0057840:intron 35.0%
ATGTTACCTTTGTGTAGGTT+CGG + chr1_2:14037180-14037199 None:intergenic 35.0%
GATGGTATTTATTGTGTCTG+TGG - chr1_2:14037265-14037284 Msa0057840:intron 35.0%
AATTGAATGCATGTTTGGAC+TGG - chr1_2:14037374-14037393 Msa0057840:intron 35.0%
! TACGTATACTAGTTTCCATC+CGG + chr1_2:14037427-14037446 None:intergenic 35.0%
ACAATGTTGTGATCTTGTGT+AGG - chr1_2:14037613-14037632 Msa0057840:intron 35.0%
CAATGTTGTGATCTTGTGTA+GGG - chr1_2:14037614-14037633 Msa0057840:intron 35.0%
ATCTTGTGTAGGGAATTTGT+GGG - chr1_2:14037624-14037643 Msa0057840:intron 35.0%
! CTCATCTCTTTAACTTCTGA+AGG + chr1_2:14037678-14037697 None:intergenic 35.0%
GTTAAAGAGATGAGTGAAGA+AGG - chr1_2:14037684-14037703 Msa0057840:intron 35.0%
TAATGACCTTCATTTGGGAA+TGG - chr1_2:14037807-14037826 Msa0057840:intron 35.0%
AATGACCTTCATTTGGGAAT+GGG - chr1_2:14037808-14037827 Msa0057840:intron 35.0%
GATCGGAATATTGGTAGATA+TGG - chr1_2:14037830-14037849 Msa0057840:intron 35.0%
! GTGGATTAATGGCAAAGATT+TGG - chr1_2:14038025-14038044 Msa0057840:five_prime_UTR 35.0%
TGATGAGTGGTTTCACTCAA+AGG - chr1_2:14032737-14032756 Msa0057840:three_prime_UTR 40.0%
GCGTATCAAAGCATAATGAG+TGG + chr1_2:14032804-14032823 None:intergenic 40.0%
CACCACCAAACACAATAAAG+AGG + chr1_2:14033163-14033182 None:intergenic 40.0%
AGATAGTTGTGCTGTGAAAG+TGG - chr1_2:14033210-14033229 Msa0057840:intron 40.0%
CTGTGAAAGTGGAACAAACA+TGG - chr1_2:14033221-14033240 Msa0057840:intron 40.0%
CATGGCTTCCTTAGAAGAAA+AGG - chr1_2:14033239-14033258 Msa0057840:CDS 40.0%
!! GAAAAGGCTAAAAGTGTTGG+AGG - chr1_2:14033255-14033274 Msa0057840:CDS 40.0%
!! AAAAGTGTTGGAGGAGTTGT+TGG - chr1_2:14033264-14033283 Msa0057840:CDS 40.0%
CTTGTCTATTACTTCCCTCA+AGG - chr1_2:14033548-14033567 Msa0057840:CDS 40.0%
GTAGAAGCTGCAACCTTAAA+AGG + chr1_2:14033757-14033776 None:intergenic 40.0%
ACAACTGAGATGGAAGACTA+GGG + chr1_2:14033813-14033832 None:intergenic 40.0%
AACAACTGAGATGGAAGACT+AGG + chr1_2:14033814-14033833 None:intergenic 40.0%
ACTTGACACAACAACTGAGA+TGG + chr1_2:14033823-14033842 None:intergenic 40.0%
TGCTTACAGAATTCAGTGGT+TGG + chr1_2:14034000-14034019 None:intergenic 40.0%
! CTATATAGCCTTACCAATGG+AGG + chr1_2:14034267-14034286 None:intergenic 40.0%
! GTGCTATATAGCCTTACCAA+TGG + chr1_2:14034270-14034289 None:intergenic 40.0%
!! ACAACTAGTTCTTGAGTTGG+GGG + chr1_2:14034376-14034395 None:intergenic 40.0%
! CGAACAACTAGTTCTTGAGT+TGG + chr1_2:14034379-14034398 None:intergenic 40.0%
ACATTTCGACATATCTACCG+AGG - chr1_2:14034421-14034440 Msa0057840:CDS 40.0%
TGCAGAAAATATCCTCACCT+CGG + chr1_2:14034441-14034460 None:intergenic 40.0%
TGTAAGGATCTAACACGATC+AGG + chr1_2:14034779-14034798 None:intergenic 40.0%
!! GTTTGTTTGTCGGCTCAAAA+AGG - chr1_2:14034860-14034879 Msa0057840:intron 40.0%
!! TCAGCAGAAAGTACTGATGA+TGG + chr1_2:14035254-14035273 None:intergenic 40.0%
! GATTTTCTGTATTTGGCCAG+TGG + chr1_2:14035474-14035493 None:intergenic 40.0%
TCAGTGATGTCGATCCTTTA+AGG - chr1_2:14035687-14035706 Msa0057840:intron 40.0%
ATATTTCGCCACTTAGAACC+AGG + chr1_2:14035716-14035735 None:intergenic 40.0%
AAGTGGCGAAATATTCAGGT+AGG - chr1_2:14035722-14035741 Msa0057840:intron 40.0%
ACCATTCGCGACTAATTGTA+TGG - chr1_2:14035777-14035796 Msa0057840:intron 40.0%
ACCATACAATTAGTCGCGAA+TGG + chr1_2:14035781-14035800 None:intergenic 40.0%
GGTGTGGTGATAAGCAAAAT+CGG - chr1_2:14035911-14035930 Msa0057840:intron 40.0%
GTGTGGTGATAAGCAAAATC+GGG - chr1_2:14035912-14035931 Msa0057840:intron 40.0%
!! AGCAAAATCGGGTTAGTGTT+TGG - chr1_2:14035923-14035942 Msa0057840:intron 40.0%
!! GCAAAATCGGGTTAGTGTTT+GGG - chr1_2:14035924-14035943 Msa0057840:intron 40.0%
GGAAAGATGAAAAGGCTTTC+TGG + chr1_2:14035961-14035980 None:intergenic 40.0%
! TCCACTGTTCCTTCATTTTC+GGG + chr1_2:14036158-14036177 None:intergenic 40.0%
! CTCCACTGTTCCTTCATTTT+CGG + chr1_2:14036159-14036178 None:intergenic 40.0%
! CCATTGTTGTTGATCACTTG+TGG + chr1_2:14036239-14036258 None:intergenic 40.0%
CCACAAGTGATCAACAACAA+TGG - chr1_2:14036236-14036255 Msa0057840:intron 40.0%
! TCTTGCAAGGGAACTCTTTT+AGG + chr1_2:14036296-14036315 None:intergenic 40.0%
GTGGACTTCATATCTTGCAA+GGG + chr1_2:14036308-14036327 None:intergenic 40.0%
TGTGGACTTCATATCTTGCA+AGG + chr1_2:14036309-14036328 None:intergenic 40.0%
GTGCTTGAAAGGTGAACTTT+CGG + chr1_2:14036347-14036366 None:intergenic 40.0%
GGGAAGTCAAACATATGATC+AGG + chr1_2:14036485-14036504 None:intergenic 40.0%
GAACTAGTATGAGCGAGTAA+TGG + chr1_2:14036596-14036615 None:intergenic 40.0%
TGGAGCATGTCAATCATTTG+AGG + chr1_2:14036662-14036681 None:intergenic 40.0%
!! TGGTTCATTGAAGGTATCGA+GGG + chr1_2:14036776-14036795 None:intergenic 40.0%
!! TTGGTTCATTGAAGGTATCG+AGG + chr1_2:14036777-14036796 None:intergenic 40.0%
CACACTTCTTGGTTCATTGA+AGG + chr1_2:14036785-14036804 None:intergenic 40.0%
CTTCAATGAACCAAGAAGTG+TGG - chr1_2:14036783-14036802 Msa0057840:intron 40.0%
AGTAGAAGGATCAACCATAG+TGG + chr1_2:14036909-14036928 None:intergenic 40.0%
TGAGCAAAAGTCGTCGAAAA+TGG + chr1_2:14036939-14036958 None:intergenic 40.0%
! TGGCAACTTAAGTTCTAGTC+AGG - chr1_2:14037000-14037019 Msa0057840:intron 40.0%
! TAGCAGAAGTAATCTGAGAC+TGG + chr1_2:14037030-14037049 None:intergenic 40.0%
CAAACATGCATTCAATTGCG+CGG + chr1_2:14037371-14037390 None:intergenic 40.0%
CTGAATGACACAAAAGGTTC+CGG - chr1_2:14037405-14037424 Msa0057840:CDS 40.0%
GATCTTGTGTAGGGAATTTG+TGG - chr1_2:14037623-14037642 Msa0057840:intron 40.0%
TCTTGTGTAGGGAATTTGTG+GGG - chr1_2:14037625-14037644 Msa0057840:intron 40.0%
TATGGACCAAACAAACCTTC+AGG - chr1_2:14037848-14037867 Msa0057840:intron 40.0%
ATGGACCAAACAAACCTTCA+GGG - chr1_2:14037849-14037868 Msa0057840:intron 40.0%
ACTCTACAACCAAAGCCAAT+AGG - chr1_2:14038064-14038083 Msa0057840:five_prime_UTR 40.0%
!! TCTTCACTTCCTATTGGCTT+TGG + chr1_2:14038076-14038095 None:intergenic 40.0%
TCAGAGTGTGATGTGATGAG+TGG - chr1_2:14032724-14032743 Msa0057840:three_prime_UTR 45.0%
GAGTGGTTTCACTCAAAGGT+TGG - chr1_2:14032741-14032760 Msa0057840:three_prime_UTR 45.0%
GTCAATGCAACTAAATGGGG+TGG - chr1_2:14033088-14033107 Msa0057840:intron 45.0%
GAATTATGGCATGCTTGTGC+TGG - chr1_2:14033494-14033513 Msa0057840:intron 45.0%
CTTGAGGCAATGACACAAGA+GGG + chr1_2:14033520-14033539 None:intergenic 45.0%
ACTTGAGGCAATGACACAAG+AGG + chr1_2:14033521-14033540 None:intergenic 45.0%
! TCTTGTGTCATTGCCTCAAG+TGG - chr1_2:14033520-14033539 Msa0057840:intron 45.0%
! CTTGTGTCATTGCCTCAAGT+GGG - chr1_2:14033521-14033540 Msa0057840:intron 45.0%
! TTGTGTCATTGCCTCAAGTG+GGG - chr1_2:14033522-14033541 Msa0057840:intron 45.0%
CCTGTTCACTATGTCCTTGA+GGG + chr1_2:14033565-14033584 None:intergenic 45.0%
ACCTGTTCACTATGTCCTTG+AGG + chr1_2:14033566-14033585 None:intergenic 45.0%
! AGGGTAGTTTGGAATCTGTG+AGG + chr1_2:14033794-14033813 None:intergenic 45.0%
GATGGAAGACTAGGGTAGTT+TGG + chr1_2:14033805-14033824 None:intergenic 45.0%
GTGTTTCCGGTATCTGAGTT+TGG - chr1_2:14034129-14034148 Msa0057840:CDS 45.0%
AGTGATACTAGCACACATGG+TGG - chr1_2:14034204-14034223 Msa0057840:CDS 45.0%
! TAGCACACATGGTGGCTTTT+CGG - chr1_2:14034212-14034231 Msa0057840:CDS 45.0%
! GGAAAAGCTGTTTCCTCCAT+TGG - chr1_2:14034251-14034270 Msa0057840:CDS 45.0%
! AGCTGTTTCCTCCATTGGTA+AGG - chr1_2:14034256-14034275 Msa0057840:CDS 45.0%
! TTGGTTGCGTCCCTCTTTTA+TGG - chr1_2:14034293-14034312 Msa0057840:CDS 45.0%
GTCTGACGCATATCATACAC+CGG + chr1_2:14034507-14034526 None:intergenic 45.0%
!!! ATCGGTGTCGGTTTTATGTG+TGG - chr1_2:14034572-14034591 Msa0057840:CDS 45.0%
!! GTTGTGAGAAGGTGTCTCTT+CGG + chr1_2:14034832-14034851 None:intergenic 45.0%
GAAGAGACACCTTCTCACAA+CGG - chr1_2:14034831-14034850 Msa0057840:intron 45.0%
AAGAGACACCTTCTCACAAC+GGG - chr1_2:14034832-14034851 Msa0057840:intron 45.0%
!! ACGGGTTGGAGTTTGTTTGT+CGG - chr1_2:14034850-14034869 Msa0057840:intron 45.0%
GGCTCAAAAAGGCTTAAAGC+AGG - chr1_2:14034871-14034890 Msa0057840:intron 45.0%
TCTGCTGATAGCATGCACAT+TGG - chr1_2:14035266-14035285 Msa0057840:intron 45.0%
TATTTGCAGGGCATGTCCTT+CGG - chr1_2:14035437-14035456 Msa0057840:CDS 45.0%
CAAATCTCATGCCAGCTGAA+AGG + chr1_2:14035512-14035531 None:intergenic 45.0%
CTTTCAGCTGGCATGAGATT+TGG - chr1_2:14035510-14035529 Msa0057840:CDS 45.0%
! TGGTATGATGTTTGAGACCG+AGG - chr1_2:14035530-14035549 Msa0057840:intron 45.0%
! GATGTTTGAGACCGAGGAAT+CGG - chr1_2:14035536-14035555 Msa0057840:intron 45.0%
! ATGTTTGAGACCGAGGAATC+GGG - chr1_2:14035537-14035556 Msa0057840:intron 45.0%
! GTGATGTCGATCCTTTAAGG+TGG - chr1_2:14035690-14035709 Msa0057840:intron 45.0%
TTAGAACCAGGCCACCTTAA+AGG + chr1_2:14035704-14035723 None:intergenic 45.0%
! TTTTGCTTATCACCACACCC+TGG + chr1_2:14035910-14035929 None:intergenic 45.0%
CCCAAATATCCGGATTGCAA+CGG + chr1_2:14036009-14036028 None:intergenic 45.0%
CCGTTGCAATCCGGATATTT+GGG - chr1_2:14036006-14036025 Msa0057840:intron 45.0%
GTCTTGTACTTGCTCACTAG+TGG - chr1_2:14036066-14036085 Msa0057840:intron 45.0%
ACCCGAAAATGAAGGAACAG+TGG - chr1_2:14036154-14036173 Msa0057840:intron 45.0%
GCAAGATATGAAGTCCACAC+AGG - chr1_2:14036310-14036329 Msa0057840:CDS 45.0%
CGGATTCTCTATAACCTGTG+TGG + chr1_2:14036327-14036346 None:intergenic 45.0%
GTATGCTCTCTGTGCTTGAA+AGG + chr1_2:14036358-14036377 None:intergenic 45.0%
CATGATTCCTCAGATAGACG+TGG - chr1_2:14036706-14036725 Msa0057840:intron 45.0%
ATCGAGGGATTCACTACTTG+AGG + chr1_2:14036761-14036780 None:intergenic 45.0%
TGCCAACCATGCAATCTTGA+GGG + chr1_2:14036985-14037004 None:intergenic 45.0%
TTGCCAACCATGCAATCTTG+AGG + chr1_2:14036986-14037005 None:intergenic 45.0%
AGAGTTGTCTCGCAGAGAAA+AGG + chr1_2:14037071-14037090 None:intergenic 45.0%
! TTTTCTCTGCGAGACAACTC+TGG - chr1_2:14037070-14037089 Msa0057840:intron 45.0%
ACCAATCCGAACCTACACAA+AGG - chr1_2:14037171-14037190 Msa0057840:CDS 45.0%
ACCTTTGTGTAGGTTCGGAT+TGG + chr1_2:14037175-14037194 None:intergenic 45.0%
GTGCAAAAAGCAGGTTCTGT+AGG - chr1_2:14037300-14037319 Msa0057840:intron 45.0%
CGCGCAATTGAATGCATGTT+TGG - chr1_2:14037369-14037388 Msa0057840:intron 45.0%
! GAATGCATGTTTGGACTGGA+TGG - chr1_2:14037378-14037397 Msa0057840:CDS 45.0%
GGTCTGCTGAATGACACAAA+AGG - chr1_2:14037399-14037418 Msa0057840:CDS 45.0%
ATGACACAAAAGGTTCCGGA+TGG - chr1_2:14037409-14037428 Msa0057840:CDS 45.0%
GAGAGTGATGTTCTGCTAGT+TGG - chr1_2:14037453-14037472 Msa0057840:CDS 45.0%
TGCTAGTTGGAGATGATCCT+TGG - chr1_2:14037466-14037485 Msa0057840:exon 45.0%
GCTAGTTGGAGATGATCCTT+GGG - chr1_2:14037467-14037486 Msa0057840:exon 45.0%
GGGTAAGAAACTTACTCCCA+AGG + chr1_2:14037486-14037505 None:intergenic 45.0%
CCTTCATTTGGGAATGGGAT+CGG - chr1_2:14037813-14037832 Msa0057840:intron 45.0%
TGGGAATGGGATCGGAATAT+TGG - chr1_2:14037821-14037840 Msa0057840:intron 45.0%
TGGACCAAACAAACCTTCAG+GGG - chr1_2:14037850-14037869 Msa0057840:intron 45.0%
! AGTGTTGGAGGAGTTGTTGG+TGG - chr1_2:14033267-14033286 Msa0057840:CDS 50.0%
! TGTGTCATTGCCTCAAGTGG+GGG - chr1_2:14033523-14033542 Msa0057840:intron 50.0%
CCCTCAAGGACATAGTGAAC+AGG - chr1_2:14033562-14033581 Msa0057840:CDS 50.0%
GCGAGTGATACTAGCACACA+TGG - chr1_2:14034201-14034220 Msa0057840:CDS 50.0%
TCGACATATCTACCGAGGTG+AGG - chr1_2:14034426-14034445 Msa0057840:CDS 50.0%
AACTCCAACCCGTTGTGAGA+AGG + chr1_2:14034843-14034862 None:intergenic 50.0%
GAGAAGTCGCAATTGCGAGT+TGG - chr1_2:14035194-14035213 Msa0057840:CDS 50.0%
!! CGCAATTGCGAGTTGGTGTA+AGG - chr1_2:14035201-14035220 Msa0057840:CDS 50.0%
TCGATTAGCAGCTGCATGAG+CGG + chr1_2:14035306-14035325 None:intergenic 50.0%
TATGGGACTCACCTTTCAGC+TGG - chr1_2:14035498-14035517 Msa0057840:CDS 50.0%
!! TAAGGTGGCCTGGTTCTAAG+TGG - chr1_2:14035705-14035724 Msa0057840:intron 50.0%
CTAAAACGGCCGTTGCAATC+CGG - chr1_2:14035997-14036016 Msa0057840:intron 50.0%
GCCGTTGCAATCCGGATATT+TGG - chr1_2:14036005-14036024 Msa0057840:intron 50.0%
! GCGATAGGCAGCAACTTTTC+CGG + chr1_2:14036425-14036444 None:intergenic 50.0%
TCTAACTGAGGCTGCTGCAT+TGG + chr1_2:14036623-14036642 None:intergenic 50.0%
CATTCGTCCACGTCTATCTG+AGG + chr1_2:14036716-14036735 None:intergenic 50.0%
CTCAGATAGACGTGGACGAA+TGG - chr1_2:14036714-14036733 Msa0057840:CDS 50.0%
TCAGCACCCTCAAGATTGCA+TGG - chr1_2:14036976-14036995 Msa0057840:intron 50.0%
CACCCTCAAGATTGCATGGT+TGG - chr1_2:14036980-14036999 Msa0057840:intron 50.0%
GTGTGACAGGTGCAAAAAGC+AGG - chr1_2:14037291-14037310 Msa0057840:intron 50.0%
GGGATGAAGCTTCTGAACAG+CGG - chr1_2:14037705-14037724 Msa0057840:intron 50.0%
CCGATCCCATTCCCAAATGA+AGG + chr1_2:14037816-14037835 None:intergenic 50.0%
GGACCAAACAAACCTTCAGG+GGG - chr1_2:14037851-14037870 Msa0057840:intron 50.0%
GACCAAACAAACCTTCAGGG+GGG - chr1_2:14037852-14037871 Msa0057840:intron 50.0%
! ATCCCCCCTGAAGGTTTGTT+TGG + chr1_2:14037857-14037876 None:intergenic 50.0%
! GTGTCATTGCCTCAAGTGGG+GGG - chr1_2:14033524-14033543 Msa0057840:intron 55.0%
TAGACAAGACCCCCCACTTG+AGG + chr1_2:14033536-14033555 None:intergenic 55.0%
GACACCTTCTCACAACGGGT+TGG - chr1_2:14034836-14034855 Msa0057840:intron 55.0%
!! GTCGATCCTTTAAGGTGGCC+TGG - chr1_2:14035695-14035714 Msa0057840:intron 55.0%
AGGCTGAATGGGATGAGCCA+GGG - chr1_2:14035890-14035909 Msa0057840:intron 55.0%
!! CGGATTGCAACGGCCGTTTT+AGG + chr1_2:14035999-14036018 None:intergenic 55.0%
TCTCTGCGAGACAACTCTGG+TGG - chr1_2:14037073-14037092 Msa0057840:intron 55.0%
GTGTCTGTGGTCTGTGTGAC+AGG - chr1_2:14037278-14037297 Msa0057840:intron 55.0%
!! CTGAACAGCGGAGCATTGCA+AGG - chr1_2:14037717-14037736 Msa0057840:intron 55.0%
TAATGGCTCATCCCCCCTGA+AGG + chr1_2:14037866-14037885 None:intergenic 55.0%
TTCGGTTCCACGCAGAGCTG+CGG - chr1_2:14034230-14034249 Msa0057840:CDS 60.0%
! AGCTTTTCCGCAGCTCTGCG+TGG + chr1_2:14034240-14034259 None:intergenic 60.0%
CCTGCGCTTACCCGATTCCT+CGG + chr1_2:14035550-14035569 None:intergenic 60.0%
CAGGCTGAATGGGATGAGCC+AGG - chr1_2:14035889-14035908 Msa0057840:intron 60.0%
GAATGGGATGAGCCAGGGTG+TGG - chr1_2:14035895-14035914 Msa0057840:intron 60.0%
CCGAGGAATCGGGTAAGCGC+AGG - chr1_2:14035547-14035566 Msa0057840:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 14032618 14038101 14032618 ID=Msa0057840;Name=Msa0057840
chr1_2 mRNA 14032618 14038101 14032618 ID=Msa0057840-mRNA-1;Parent=Msa0057840;Name=Msa0057840-mRNA-1;_AED=0.25;_eAED=0.25;_QI=175|1|1|1|0.92|0.86|15|349|863
chr1_2 exon 14032618 14033084 14032618 ID=Msa0057840-mRNA-1:exon:5623;Parent=Msa0057840-mRNA-1
chr1_2 exon 14033229 14033419 14033229 ID=Msa0057840-mRNA-1:exon:5622;Parent=Msa0057840-mRNA-1
chr1_2 exon 14033527 14034608 14033527 ID=Msa0057840-mRNA-1:exon:5621;Parent=Msa0057840-mRNA-1
chr1_2 exon 14034692 14034827 14034692 ID=Msa0057840-mRNA-1:exon:5620;Parent=Msa0057840-mRNA-1
chr1_2 exon 14034980 14035055 14034980 ID=Msa0057840-mRNA-1:exon:5619;Parent=Msa0057840-mRNA-1
chr1_2 exon 14035151 14035273 14035151 ID=Msa0057840-mRNA-1:exon:5618;Parent=Msa0057840-mRNA-1
chr1_2 exon 14035365 14035529 14035365 ID=Msa0057840-mRNA-1:exon:5617;Parent=Msa0057840-mRNA-1
chr1_2 exon 14035805 14035895 14035805 ID=Msa0057840-mRNA-1:exon:5616;Parent=Msa0057840-mRNA-1
chr1_2 exon 14036277 14036361 14036277 ID=Msa0057840-mRNA-1:exon:5615;Parent=Msa0057840-mRNA-1
chr1_2 exon 14036447 14036599 14036447 ID=Msa0057840-mRNA-1:exon:5614;Parent=Msa0057840-mRNA-1
chr1_2 exon 14036707 14036763 14036707 ID=Msa0057840-mRNA-1:exon:5613;Parent=Msa0057840-mRNA-1
chr1_2 exon 14036858 14036956 14036858 ID=Msa0057840-mRNA-1:exon:5612;Parent=Msa0057840-mRNA-1
chr1_2 exon 14037136 14037248 14037136 ID=Msa0057840-mRNA-1:exon:5611;Parent=Msa0057840-mRNA-1
chr1_2 exon 14037377 14037513 14037377 ID=Msa0057840-mRNA-1:exon:5610;Parent=Msa0057840-mRNA-1
chr1_2 exon 14037961 14038101 14037961 ID=Msa0057840-mRNA-1:exon:5609;Parent=Msa0057840-mRNA-1
chr1_2 five_prime_UTR 14037961 14038101 14037961 ID=Msa0057840-mRNA-1:five_prime_utr;Parent=Msa0057840-mRNA-1
chr1_2 five_prime_UTR 14037480 14037513 14037480 ID=Msa0057840-mRNA-1:five_prime_utr;Parent=Msa0057840-mRNA-1
chr1_2 CDS 14037377 14037479 14037377 ID=Msa0057840-mRNA-1:cds;Parent=Msa0057840-mRNA-1
chr1_2 CDS 14037136 14037248 14037136 ID=Msa0057840-mRNA-1:cds;Parent=Msa0057840-mRNA-1
chr1_2 CDS 14036858 14036956 14036858 ID=Msa0057840-mRNA-1:cds;Parent=Msa0057840-mRNA-1
chr1_2 CDS 14036707 14036763 14036707 ID=Msa0057840-mRNA-1:cds;Parent=Msa0057840-mRNA-1
chr1_2 CDS 14036447 14036599 14036447 ID=Msa0057840-mRNA-1:cds;Parent=Msa0057840-mRNA-1
chr1_2 CDS 14036277 14036361 14036277 ID=Msa0057840-mRNA-1:cds;Parent=Msa0057840-mRNA-1
chr1_2 CDS 14035805 14035895 14035805 ID=Msa0057840-mRNA-1:cds;Parent=Msa0057840-mRNA-1
chr1_2 CDS 14035365 14035529 14035365 ID=Msa0057840-mRNA-1:cds;Parent=Msa0057840-mRNA-1
chr1_2 CDS 14035151 14035273 14035151 ID=Msa0057840-mRNA-1:cds;Parent=Msa0057840-mRNA-1
chr1_2 CDS 14034980 14035055 14034980 ID=Msa0057840-mRNA-1:cds;Parent=Msa0057840-mRNA-1
chr1_2 CDS 14034692 14034827 14034692 ID=Msa0057840-mRNA-1:cds;Parent=Msa0057840-mRNA-1
chr1_2 CDS 14033527 14034608 14033527 ID=Msa0057840-mRNA-1:cds;Parent=Msa0057840-mRNA-1
chr1_2 CDS 14033229 14033419 14033229 ID=Msa0057840-mRNA-1:cds;Parent=Msa0057840-mRNA-1
chr1_2 CDS 14032967 14033084 14032967 ID=Msa0057840-mRNA-1:cds;Parent=Msa0057840-mRNA-1
chr1_2 three_prime_UTR 14032618 14032966 14032618 ID=Msa0057840-mRNA-1:three_prime_utr;Parent=Msa0057840-mRNA-1
Gene Sequence

>Msa0057840

ATGGCTTCCTTAGAAGAAAAGGCTAAAAGTGTTGGAGGAGTTGTTGGTGGTCAAACTCTTGTTGCTGAAATGAAGTTGCTCAAAGAAATGCAAGAACATTGTGGGGTTAGAAAGACATTAAATTCAGAATTATGGCATGCTTGTGCTGGCCCTCTTGTGTCATTGCCTCAAGTGGGGGGTCTTGTCTATTACTTCCCTCAAGGACATAGTGAACAGGTTGCAGCTTCTACTAGAAGAATAGCTACCTCACAGATTCCAAACTACCCTAGTCTTCCATCTCAGTTGTTGTGTCAAGTACAAAATGTCACACTACATGCTGACAAGGAGACAGATGAAATCTATGCTCAAATGACTCTCCAACCACTGAATTCTGAAAAAGAAGTGTTTCCGGTATCTGAGTTTGGACTAAACAAAAGTAAACATCCAACTGAGTTTTTCTGCAAAACTTTGACTGCGAGTGATACTAGCACACATGGTGGCTTTTCGGTTCCACGCAGAGCTGCGGAAAAGCTGTTTCCTCCATTGGATTACACAATTCAACCCCCAACTCAAGAACTAGTTGTTCGAGATTTGCATGATAATACATGGACATTTCGACATATCTACCGAGGTCAGCCGAAGAGACACCTTCTCACAACGGGTTGGAGTTTGTTTGTCGGCTCAAAAAGGCTTAAAGCAGGCGATTCTGTTCTTTTTATCAGGGATGAGAAGTCGCAATTGCGAGTTGGTGTAAGGCGTGCTAATCGTCAACAGACAACACTGCCATCATCAGTACTTTCTGCTGATAGCATGCACATTGGTGTGCTTGCTGCTGCCGCTCATGCAGCTGCTAATCGAAGTCCATTCACGATTTTCTACAATCCAAGGGCATGTCCTTCGGATTTTGTTATTCCACTGGCCAAATACAGAAAATCTGTTTATGGGACTCACCTTTCAGCTGGCATGAGATTTGGTATGATGTTTGAGACCGAGGAATCGGGTAAGCGCAGATATATGGGTACAATTGTAGGTATCAGTGATGTCGATCCTTTAAGGTGGCCTGGTTCTAAGTGGCGAAATATTCAGGCTGAATGGGATGAGCCAGGGTGTGGTGATAAGCAAAATCGGGTTAGTGTTTGGGAGATTGAGACTCCAGAAAGCCTTTTCATCTTTCCTTCTTTGACTTCAAGCCTAAAACGGCCGTTGCAATCCGGATATTTGGAAAATGAGTGGGGAACTTTGATACGAAGACCCTTTATTAAAGTACCCGAAAATGAAGGAACAGTGGAGCTCTCAAACTCAATGCCAAATCTCTACCAAGAAAACATGATGAAGATGTTTTATAAACCACAAGTGATCAACAACAATGGAGCCTTTTTACCTATCATGCAACAAGATTATGCTCCTAAAAGAGTTCCCTTGCAAGATATGAAGTCCACACAGGTTATAGAGAATCCGAAAGTTCACCTTTCAAGCACAGAGAGCATACCTAATAACACCTTTAACATGCATTCATTGTTGAAAAGTGAGCATCCGGAAAAGTTGCTGCCTATCGCCAAAACCAATAATTCAAAATTAGAATCTGAGGTGTTACCTGATCATATGTTTGACTTCCCATCTTTTGAAAGCAGCAACAACATTGAAAAAGTGAATACGGCAAACCAACTAACATATTATAATCAAAACCAAAACCAAACTCAAAATCCATTACTCGCTCATACTAGTTCATCGCCAATGCAGCAGCCTCAGTTAGAATCATCAATGTCACATCCTCAAATGATTGACATGCTCCAACCCGATTCTTCTATTGTAAACAGCATGATTCCTCAGATAGACGTGGACGAATGGATGATGTATTCTTCTTGTCAGCCTCAAGTAGTGAATCCCTCGATACCTTCAATGAACCAAGAAGTGTGGGATAATTATGTGAAGAATTTTAACTTGAGGGATCTTTCAGCTGAAAGCAATAACCAAAGTGAAATTTGTGTCAATGTTGATGCTATTAATAGTGTCAGTACCACTATGGTTGATCCTTCTACTTCAAACACCATTTTCGACGACTTTTGCTCAATGAAAGATAAAGATTTTCAGCACCCTCAAGATTGCATGGTTGGCAACTTAAGTTCTAGTCAGGATGGCCAGTCTCAGATTACTTCTGCTAGTCTAGCTGAGTCGCACGCCTTTTCTCTGCGAGACAACTCTGGTGGTACTTCTTCAAGCCATGTTGATTTTGATGAAAGTAGTTTTCTGCAGAATAATAACTCTTGGAAGCAAGTAGCTGCACCAATCCGAACCTACACAAAGGTGCAAAAAGCAGGTTCTGTAGGAAGATCAATTGATGTGACTACTTTCAAGAACTATGAAGAGTTGATCCGCGCAATTGAATGCATGTTTGGACTGGATGGTCTGCTGAATGACACAAAAGGTTCCGGATGGAAACTAGTATACGTAGATTATGAGAGTGATGTTCTGCTAGTTGGAGATGATCCTTGGGAGGAATTTGTGGGGTGTGTCCGCTGTATACGAATATTATCACCTTCAGAAGTTAAAGAGATGAGTGAAGAAGGGATGAAGCTTCTGAACAGCGGAGCATTGCAAGGAATCAATGTGTGA
Protein sequence

>Msa0057840

MASLEEKAKSVGGVVGGQTLVAEMKLLKEMQEHCGVRKTLNSELWHACAGPLVSLPQVGGLVYYFPQGHSEQVAASTRRIATSQIPNYPSLPSQLLCQVQNVTLHADKETDEIYAQMTLQPLNSEKEVFPVSEFGLNKSKHPTEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDSVLFIRDEKSQLRVGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSDFVIPLAKYRKSVYGTHLSAGMRFGMMFETEESGKRRYMGTIVGISDVDPLRWPGSKWRNIQAEWDEPGCGDKQNRVSVWEIETPESLFIFPSLTSSLKRPLQSGYLENEWGTLIRRPFIKVPENEGTVELSNSMPNLYQENMMKMFYKPQVINNNGAFLPIMQQDYAPKRVPLQDMKSTQVIENPKVHLSSTESIPNNTFNMHSLLKSEHPEKLLPIAKTNNSKLESEVLPDHMFDFPSFESSNNIEKVNTANQLTYYNQNQNQTQNPLLAHTSSSPMQQPQLESSMSHPQMIDMLQPDSSIVNSMIPQIDVDEWMMYSSCQPQVVNPSIPSMNQEVWDNYVKNFNLRDLSAESNNQSEICVNVDAINSVSTTMVDPSTSNTIFDDFCSMKDKDFQHPQDCMVGNLSSSQDGQSQITSASLAESHAFSLRDNSGGTSSSHVDFDESSFLQNNNSWKQVAAPIRTYTKVQKAGSVGRSIDVTTFKNYEELIRAIECMFGLDGLLNDTKGSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPSEVKEMSEEGMKLLNSGALQGINV*