Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701440 | RHN42672.1 | 97.854 | 466 | 10 | 0 | 1 | 466 | 14 | 479 | 0.0 | 943 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701440 | sp|F4KGE8|GIL1_ARATH | 29.803 | 406 | 249 | 7 | 79 | 458 | 160 | 555 | 1.67e-43 | 164 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701440 | A0A396GNK6 | 97.854 | 466 | 10 | 0 | 1 | 466 | 14 | 479 | 0.0 | 943 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0657310 | Msa0701440 | 0.945688 | 1.911717e-104 | -8.615850e-47 |
| Msa0693330 | Msa0701440 | 0.836946 | 6.945309e-57 | -8.615850e-47 |
| Msa0701360 | Msa0701440 | 0.848956 | 4.403653e-60 | -8.615850e-47 |
| Msa0701440 | Msa0702720 | 0.811776 | 5.912326e-51 | -8.615850e-47 |
| Msa0701440 | Msa0833530 | 0.809386 | 1.941203e-50 | -8.615850e-47 |
| Msa0701440 | Msa1034500 | 0.810207 | 1.293105e-50 | -8.615850e-47 |
| Msa0701440 | Msa1268240 | 0.818566 | 1.833304e-52 | -8.615850e-47 |
| Msa0701440 | Msa1418240 | 0.823430 | 1.391436e-53 | -8.615850e-47 |
| Msa0209140 | Msa0701440 | 0.808318 | 3.285513e-50 | -8.615850e-47 |
| Msa0241830 | Msa0701440 | 0.805704 | 1.173992e-49 | -8.615850e-47 |
| Msa0279850 | Msa0701440 | 0.818454 | 1.943698e-52 | -8.615850e-47 |
| Msa0317970 | Msa0701440 | 0.801600 | 8.342848e-49 | -8.615850e-47 |
| Msa0322900 | Msa0701440 | 0.806880 | 6.636307e-50 | -8.615850e-47 |
| Msa0485240 | Msa0701440 | 0.819127 | 1.366933e-52 | -8.615850e-47 |
| Msa0565170 | Msa0701440 | 0.813912 | 2.012945e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701440 | MtrunA17_Chr8g0379551 | 97.854 | 466 | 10 | 0 | 1 | 466 | 14 | 479 | 0.0 | 943 |
| Msa0701440 | MtrunA17_Chr2g0315531 | 44.543 | 449 | 238 | 5 | 14 | 458 | 9 | 450 | 2.32e-120 | 360 |
| Msa0701440 | MtrunA17_Chr8g0359791 | 47.804 | 387 | 187 | 6 | 78 | 459 | 33 | 409 | 8.31e-115 | 344 |
| Msa0701440 | MtrunA17_Chr4g0011611 | 39.000 | 400 | 214 | 5 | 74 | 459 | 30 | 413 | 9.23e-95 | 292 |
| Msa0701440 | MtrunA17_Chr7g0230481 | 33.656 | 413 | 245 | 6 | 62 | 459 | 125 | 523 | 4.48e-64 | 216 |
| Msa0701440 | MtrunA17_Chr3g0103691 | 28.967 | 397 | 255 | 5 | 79 | 458 | 91 | 477 | 3.26e-51 | 180 |
| Msa0701440 | MtrunA17_Chr5g0432511 | 31.367 | 373 | 230 | 5 | 93 | 465 | 33 | 379 | 7.35e-49 | 172 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701440 | AT1G29300.1 | 53.846 | 481 | 185 | 9 | 1 | 466 | 1 | 459 | 2.28e-167 | 479 |
| Msa0701440 | AT3G14870.1 | 44.872 | 468 | 243 | 8 | 1 | 459 | 5 | 466 | 2.64e-130 | 385 |
| Msa0701440 | AT3G14870.3 | 44.872 | 468 | 243 | 8 | 1 | 459 | 2 | 463 | 3.35e-130 | 385 |
| Msa0701440 | AT3G14870.4 | 44.872 | 468 | 243 | 8 | 1 | 459 | 1 | 462 | 3.43e-130 | 385 |
| Msa0701440 | AT3G14870.5 | 44.872 | 468 | 243 | 8 | 1 | 459 | 1 | 462 | 3.43e-130 | 385 |
| Msa0701440 | AT3G14870.2 | 44.872 | 468 | 243 | 8 | 1 | 459 | 1 | 462 | 3.43e-130 | 385 |
| Msa0701440 | AT1G53380.2 | 43.803 | 468 | 239 | 5 | 1 | 460 | 1 | 452 | 3.15e-128 | 380 |
| Msa0701440 | AT1G53380.4 | 43.803 | 468 | 239 | 5 | 1 | 460 | 1 | 452 | 3.15e-128 | 380 |
| Msa0701440 | AT1G53380.1 | 43.803 | 468 | 239 | 5 | 1 | 460 | 1 | 452 | 3.15e-128 | 380 |
| Msa0701440 | AT1G53380.3 | 43.803 | 468 | 239 | 5 | 1 | 460 | 1 | 452 | 3.15e-128 | 380 |
| Msa0701440 | AT1G53380.5 | 43.803 | 468 | 239 | 5 | 1 | 460 | 1 | 452 | 3.15e-128 | 380 |
| Msa0701440 | AT2G45260.1 | 40.351 | 399 | 219 | 4 | 74 | 461 | 31 | 421 | 2.16e-97 | 300 |
| Msa0701440 | AT3G60680.1 | 34.625 | 387 | 233 | 5 | 81 | 459 | 120 | 494 | 5.23e-73 | 239 |
| Msa0701440 | AT2G30380.1 | 32.915 | 398 | 216 | 8 | 67 | 459 | 60 | 411 | 1.08e-56 | 193 |
| Msa0701440 | AT4G34080.1 | 36.727 | 275 | 163 | 3 | 74 | 337 | 7 | 281 | 3.51e-54 | 183 |
| Msa0701440 | AT4G33320.1 | 35.821 | 268 | 160 | 4 | 74 | 329 | 7 | 274 | 6.45e-49 | 169 |
| Msa0701440 | AT5G58960.2 | 29.803 | 406 | 249 | 7 | 79 | 458 | 85 | 480 | 4.26e-45 | 164 |
| Msa0701440 | AT5G58960.3 | 29.803 | 406 | 249 | 7 | 79 | 458 | 85 | 480 | 4.26e-45 | 164 |
| Msa0701440 | AT5G58960.1 | 29.803 | 406 | 249 | 7 | 79 | 458 | 160 | 555 | 1.69e-44 | 164 |
| Msa0701440 | AT2G32130.1 | 57.724 | 123 | 52 | 0 | 80 | 202 | 34 | 156 | 6.47e-43 | 149 |
| Msa0701440 | AT4G36100.1 | 43.636 | 110 | 57 | 2 | 74 | 178 | 7 | 116 | 6.35e-21 | 92.0 |
Find 58 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTGTTCATTGCTGATTT+TGG | 0.079747 | 4_4:-72842064 | None:intergenic |
| TTCTAATTCCGGCGAGTTTC+GGG | 0.120775 | 4_4:+72843335 | Msa0701440:CDS |
| ATGGACAACTTGATGATATT+TGG | 0.163563 | 4_4:-72843055 | None:intergenic |
| ATTCTAATTCCGGCGAGTTT+CGG | 0.208130 | 4_4:+72843334 | Msa0701440:CDS |
| ATTTGTCAAAATAGTGATTT+TGG | 0.234573 | 4_4:-72842954 | None:intergenic |
| GATTCTATTGATTCTAATTC+CGG | 0.300156 | 4_4:+72843324 | Msa0701440:CDS |
| CGGAGATGGCAAAGCGCGTT+TGG | 0.317538 | 4_4:+72843172 | Msa0701440:CDS |
| TTCTCCTTGAAGCTTCTTGA+TGG | 0.321429 | 4_4:-72842539 | None:intergenic |
| CTTCTTGATGGTGATTTCAT+AGG | 0.327494 | 4_4:-72842527 | None:intergenic |
| TTCTTATTGATCTCAAAGTA+TGG | 0.329293 | 4_4:-72842729 | None:intergenic |
| GAGTCAGGTTTATCTGTCTT+TGG | 0.330222 | 4_4:+72843407 | Msa0701440:CDS |
| CAGAGGAAGCTAGTGAATTC+TGG | 0.337395 | 4_4:+72843114 | Msa0701440:CDS |
| TCAAGTTGTCCATGCTAAAA+TGG | 0.340049 | 4_4:+72843065 | Msa0701440:CDS |
| GAAACTTATGATTGAAGAAA+TGG | 0.349019 | 4_4:+72842759 | Msa0701440:CDS |
| TCAGTTTCAACTTCATGTTC+AGG | 0.353607 | 4_4:+72843300 | Msa0701440:CDS |
| AAAATGGAGTGTTCTTTGTT+TGG | 0.368125 | 4_4:+72843081 | Msa0701440:CDS |
| AAGAAATGGAATCAGCAAAC+TGG | 0.369176 | 4_4:+72842773 | Msa0701440:CDS |
| CGTTTGGACACTGCATTACT+TGG | 0.373882 | 4_4:+72843188 | Msa0701440:CDS |
| GATTCAACATTGAAAGTTCA+AGG | 0.402308 | 4_4:-72842681 | None:intergenic |
| AACTTGGCAAAAGATGAGTT+TGG | 0.414833 | 4_4:-72843024 | None:intergenic |
| TTCTAACCTTGTTCTTCTGT+TGG | 0.416097 | 4_4:-72842249 | None:intergenic |
| GGTTAGAAACAAAGCAGTTA+TGG | 0.418035 | 4_4:+72842264 | Msa0701440:CDS |
| GGTTTGGTGAAAACTGCATT+TGG | 0.434711 | 4_4:-72842826 | None:intergenic |
| AAAACAACGATGACTTGGTT+TGG | 0.448235 | 4_4:-72842842 | None:intergenic |
| GTTTGCATAACAATGTTTGA+AGG | 0.448726 | 4_4:+72842880 | Msa0701440:CDS |
| ATCATATGCAGAACTTCAAA+TGG | 0.451722 | 4_4:+72842333 | Msa0701440:CDS |
| TAGGTTCTCTGAGGTTTACA+TGG | 0.451972 | 4_4:+72843260 | Msa0701440:CDS |
| ATCACCATCAAGAAGCTTCA+AGG | 0.452355 | 4_4:+72842535 | Msa0701440:CDS |
| CAGAATTCACTAGCTTCCTC+TGG | 0.453524 | 4_4:-72843113 | None:intergenic |
| CAGTTTCAACTTCATGTTCA+GGG | 0.460825 | 4_4:+72843301 | Msa0701440:CDS |
| TGTATTGAATCATTGTTGTA+AGG | 0.470099 | 4_4:-72842364 | None:intergenic |
| TAAGACAGTGATACAGAGTC+AGG | 0.472174 | 4_4:+72843392 | Msa0701440:CDS |
| TCAGGTTTATCTGTCTTTGG+TGG | 0.472612 | 4_4:+72843410 | Msa0701440:CDS |
| TTCAGGTCAAGAAGAATACT+AGG | 0.473719 | 4_4:+72843241 | Msa0701440:CDS |
| CCATCTCAGAATTGAAAAGA+AGG | 0.510329 | 4_4:+72842422 | Msa0701440:CDS |
| AAAGCAAAACAACGATGACT+TGG | 0.515541 | 4_4:-72842847 | None:intergenic |
| AGAAATGGAATCAGCAAACT+GGG | 0.539408 | 4_4:+72842774 | Msa0701440:CDS |
| TTTGGTGAATATTGTGAAGA+GGG | 0.541008 | 4_4:-72842936 | None:intergenic |
| CAAAATCAGCAATGAACAAG+AGG | 0.553083 | 4_4:+72842065 | Msa0701440:CDS |
| TGGTGAAAACTGCATTTGGA+TGG | 0.559887 | 4_4:-72842822 | None:intergenic |
| GTGGTGCCTGGTTTCAACAT+TGG | 0.564074 | 4_4:+72843369 | Msa0701440:CDS |
| TAATTCCGGCGAGTTTCGGG+TGG | 0.572386 | 4_4:+72843338 | Msa0701440:CDS |
| AGCAGCTGATCAAGCAGTGG+TGG | 0.584305 | 4_4:+72842387 | Msa0701440:CDS |
| GAAAACCACCCGAAACTCGC+CGG | 0.587240 | 4_4:-72843343 | None:intergenic |
| ATTTGATGGTGATCTGTGAA+AGG | 0.594388 | 4_4:-72842208 | None:intergenic |
| AGTTTCAACTTCATGTTCAG+GGG | 0.594405 | 4_4:+72843302 | Msa0701440:CDS |
| CAACTCACATCTCAAAGTGA+AGG | 0.600233 | 4_4:+72842174 | Msa0701440:CDS |
| TGTTTGGAAATTTGAACCAG+AGG | 0.621071 | 4_4:+72843097 | Msa0701440:CDS |
| ATTTGCAAAGACATTCCAGA+AGG | 0.624146 | 4_4:+72842096 | Msa0701440:CDS |
| TTATGGAGGCTCTAATAGCA+AGG | 0.629498 | 4_4:+72842281 | Msa0701440:CDS |
| AGGAAGCTAGTGAATTCTGG+AGG | 0.632294 | 4_4:+72843117 | Msa0701440:CDS |
| GCTAGCATTATAGTAACTTG+AGG | 0.633614 | 4_4:-72842472 | None:intergenic |
| GTCTTACCAATGTTGAAACC+AGG | 0.633731 | 4_4:-72843375 | None:intergenic |
| TAGAAACAAAGCAGTTATGG+AGG | 0.646650 | 4_4:+72842267 | Msa0701440:CDS |
| GAAGAATACTAGGTTCTCTG+AGG | 0.672182 | 4_4:+72843251 | Msa0701440:CDS |
| GGAAGCTAGTGAATTCTGGA+GGG | 0.675270 | 4_4:+72843118 | Msa0701440:CDS |
| ACAAGCAGCTGATCAAGCAG+TGG | 0.679340 | 4_4:+72842384 | Msa0701440:CDS |
| TAAGCACCAACAGAAGAACA+AGG | 0.710444 | 4_4:+72842243 | Msa0701440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAAATTGCTTCAAATAA+TGG | + | chr4_4:72842139-72842158 | Msa0701440:CDS | 20.0% |
| !!! | TACTATTAGTTTTCATTTGA+TGG | - | chr4_4:72842225-72842244 | None:intergenic | 20.0% |
| !!! | ATTTGTCAAAATAGTGATTT+TGG | - | chr4_4:72842957-72842976 | None:intergenic | 20.0% |
| !!! | ATATTTGGATTTTAGAAACT+TGG | - | chr4_4:72843043-72843062 | None:intergenic | 20.0% |
| !! | ACAAAAATTGCTTCAAATAA+TGG | + | chr4_4:72842139-72842158 | Msa0701440:CDS | 20.0% |
| !!! | TACTATTAGTTTTCATTTGA+TGG | - | chr4_4:72842225-72842244 | None:intergenic | 20.0% |
| !!! | ATTTGTCAAAATAGTGATTT+TGG | - | chr4_4:72842957-72842976 | None:intergenic | 20.0% |
| !!! | ATATTTGGATTTTAGAAACT+TGG | - | chr4_4:72843043-72843062 | None:intergenic | 20.0% |
| ! | TGTATTGAATCATTGTTGTA+AGG | - | chr4_4:72842367-72842386 | None:intergenic | 25.0% |
| ! | TTCTTATTGATCTCAAAGTA+TGG | - | chr4_4:72842732-72842751 | None:intergenic | 25.0% |
| ! | GAAACTTATGATTGAAGAAA+TGG | + | chr4_4:72842759-72842778 | Msa0701440:CDS | 25.0% |
| !!! | ACTATTTTGACAAATTCAAG+AGG | + | chr4_4:72842962-72842981 | Msa0701440:CDS | 25.0% |
| !!! | TTGTTTTCTAAGTACTGTTT+TGG | - | chr4_4:72843003-72843022 | None:intergenic | 25.0% |
| !!! | GATTCTATTGATTCTAATTC+CGG | + | chr4_4:72843324-72843343 | Msa0701440:CDS | 25.0% |
| ! | TGTATTGAATCATTGTTGTA+AGG | - | chr4_4:72842367-72842386 | None:intergenic | 25.0% |
| ! | TTCTTATTGATCTCAAAGTA+TGG | - | chr4_4:72842732-72842751 | None:intergenic | 25.0% |
| ! | GAAACTTATGATTGAAGAAA+TGG | + | chr4_4:72842759-72842778 | Msa0701440:CDS | 25.0% |
| !!! | ACTATTTTGACAAATTCAAG+AGG | + | chr4_4:72842962-72842981 | Msa0701440:CDS | 25.0% |
| !!! | TTGTTTTCTAAGTACTGTTT+TGG | - | chr4_4:72843003-72843022 | None:intergenic | 25.0% |
| !!! | GATTCTATTGATTCTAATTC+CGG | + | chr4_4:72843324-72843343 | Msa0701440:CDS | 25.0% |
| ! | TTCTGCATATGATGCTTTTA+TGG | - | chr4_4:72842326-72842345 | None:intergenic | 30.0% |
| ATCATATGCAGAACTTCAAA+TGG | + | chr4_4:72842333-72842352 | Msa0701440:CDS | 30.0% | |
| !!! | CTCATCAAGTTTTTTTCTGA+GGG | - | chr4_4:72842593-72842612 | None:intergenic | 30.0% |
| !!! | ACTCATCAAGTTTTTTTCTG+AGG | - | chr4_4:72842594-72842613 | None:intergenic | 30.0% |
| GATTCAACATTGAAAGTTCA+AGG | - | chr4_4:72842684-72842703 | None:intergenic | 30.0% | |
| GTTTGCATAACAATGTTTGA+AGG | + | chr4_4:72842880-72842899 | Msa0701440:CDS | 30.0% | |
| TTTGGTGAATATTGTGAAGA+GGG | - | chr4_4:72842939-72842958 | None:intergenic | 30.0% | |
| ! | TTTTGGTGAATATTGTGAAG+AGG | - | chr4_4:72842940-72842959 | None:intergenic | 30.0% |
| ! | ATGGACAACTTGATGATATT+TGG | - | chr4_4:72843058-72843077 | None:intergenic | 30.0% |
| ! | AAAATGGAGTGTTCTTTGTT+TGG | + | chr4_4:72843081-72843100 | Msa0701440:CDS | 30.0% |
| !!! | AGCTTTTTTCTTAGCTTTTG+CGG | + | chr4_4:72843152-72843171 | Msa0701440:CDS | 30.0% |
| ! | AGAAGATGTTAGCATTTTTC+AGG | + | chr4_4:72843224-72843243 | Msa0701440:CDS | 30.0% |
| ! | TTCTGCATATGATGCTTTTA+TGG | - | chr4_4:72842326-72842345 | None:intergenic | 30.0% |
| ATCATATGCAGAACTTCAAA+TGG | + | chr4_4:72842333-72842352 | Msa0701440:CDS | 30.0% | |
| !!! | CTCATCAAGTTTTTTTCTGA+GGG | - | chr4_4:72842593-72842612 | None:intergenic | 30.0% |
| !!! | ACTCATCAAGTTTTTTTCTG+AGG | - | chr4_4:72842594-72842613 | None:intergenic | 30.0% |
| GATTCAACATTGAAAGTTCA+AGG | - | chr4_4:72842684-72842703 | None:intergenic | 30.0% | |
| GTTTGCATAACAATGTTTGA+AGG | + | chr4_4:72842880-72842899 | Msa0701440:CDS | 30.0% | |
| TTTGGTGAATATTGTGAAGA+GGG | - | chr4_4:72842939-72842958 | None:intergenic | 30.0% | |
| ! | TTTTGGTGAATATTGTGAAG+AGG | - | chr4_4:72842940-72842959 | None:intergenic | 30.0% |
| ! | ATGGACAACTTGATGATATT+TGG | - | chr4_4:72843058-72843077 | None:intergenic | 30.0% |
| ! | AAAATGGAGTGTTCTTTGTT+TGG | + | chr4_4:72843081-72843100 | Msa0701440:CDS | 30.0% |
| !!! | AGCTTTTTTCTTAGCTTTTG+CGG | + | chr4_4:72843152-72843171 | Msa0701440:CDS | 30.0% |
| ! | AGAAGATGTTAGCATTTTTC+AGG | + | chr4_4:72843224-72843243 | Msa0701440:CDS | 30.0% |
| !!! | CTCTTGTTCATTGCTGATTT+TGG | - | chr4_4:72842067-72842086 | None:intergenic | 35.0% |
| CAAAATCAGCAATGAACAAG+AGG | + | chr4_4:72842065-72842084 | Msa0701440:CDS | 35.0% | |
| ATTTGCAAAGACATTCCAGA+AGG | + | chr4_4:72842096-72842115 | Msa0701440:CDS | 35.0% | |
| !!! | TTTTGAGACTAATCACCTTC+TGG | - | chr4_4:72842114-72842133 | None:intergenic | 35.0% |
| !! | ATTTGATGGTGATCTGTGAA+AGG | - | chr4_4:72842211-72842230 | None:intergenic | 35.0% |
| TTCTAACCTTGTTCTTCTGT+TGG | - | chr4_4:72842252-72842271 | None:intergenic | 35.0% | |
| GGTTAGAAACAAAGCAGTTA+TGG | + | chr4_4:72842264-72842283 | Msa0701440:CDS | 35.0% | |
| TAGAAACAAAGCAGTTATGG+AGG | + | chr4_4:72842267-72842286 | Msa0701440:CDS | 35.0% | |
| !! | CCTTCTTTTCAATTCTGAGA+TGG | - | chr4_4:72842425-72842444 | None:intergenic | 35.0% |
| CCATCTCAGAATTGAAAAGA+AGG | + | chr4_4:72842422-72842441 | Msa0701440:CDS | 35.0% | |
| GCTAGCATTATAGTAACTTG+AGG | - | chr4_4:72842475-72842494 | None:intergenic | 35.0% | |
| !! | CTTCTTGATGGTGATTTCAT+AGG | - | chr4_4:72842530-72842549 | None:intergenic | 35.0% |
| AAGAAATGGAATCAGCAAAC+TGG | + | chr4_4:72842773-72842792 | Msa0701440:CDS | 35.0% | |
| AGAAATGGAATCAGCAAACT+GGG | + | chr4_4:72842774-72842793 | Msa0701440:CDS | 35.0% | |
| !! | AAAACAACGATGACTTGGTT+TGG | - | chr4_4:72842845-72842864 | None:intergenic | 35.0% |
| AAAGCAAAACAACGATGACT+TGG | - | chr4_4:72842850-72842869 | None:intergenic | 35.0% | |
| AACTTGGCAAAAGATGAGTT+TGG | - | chr4_4:72843027-72843046 | None:intergenic | 35.0% | |
| ! | TCAAGTTGTCCATGCTAAAA+TGG | + | chr4_4:72843065-72843084 | Msa0701440:CDS | 35.0% |
| !! | AAGAACACTCCATTTTAGCA+TGG | - | chr4_4:72843077-72843096 | None:intergenic | 35.0% |
| TGTTTGGAAATTTGAACCAG+AGG | + | chr4_4:72843097-72843116 | Msa0701440:CDS | 35.0% | |
| GCTAAGAAAAAAGCTGAATC+TGG | - | chr4_4:72843147-72843166 | None:intergenic | 35.0% | |
| TTCAGGTCAAGAAGAATACT+AGG | + | chr4_4:72843241-72843260 | Msa0701440:CDS | 35.0% | |
| TCAGTTTCAACTTCATGTTC+AGG | + | chr4_4:72843300-72843319 | Msa0701440:CDS | 35.0% | |
| CAGTTTCAACTTCATGTTCA+GGG | + | chr4_4:72843301-72843320 | Msa0701440:CDS | 35.0% | |
| AGTTTCAACTTCATGTTCAG+GGG | + | chr4_4:72843302-72843321 | Msa0701440:CDS | 35.0% | |
| !!! | CTCTTGTTCATTGCTGATTT+TGG | - | chr4_4:72842067-72842086 | None:intergenic | 35.0% |
| CAAAATCAGCAATGAACAAG+AGG | + | chr4_4:72842065-72842084 | Msa0701440:CDS | 35.0% | |
| ATTTGCAAAGACATTCCAGA+AGG | + | chr4_4:72842096-72842115 | Msa0701440:CDS | 35.0% | |
| !!! | TTTTGAGACTAATCACCTTC+TGG | - | chr4_4:72842114-72842133 | None:intergenic | 35.0% |
| !! | ATTTGATGGTGATCTGTGAA+AGG | - | chr4_4:72842211-72842230 | None:intergenic | 35.0% |
| TTCTAACCTTGTTCTTCTGT+TGG | - | chr4_4:72842252-72842271 | None:intergenic | 35.0% | |
| GGTTAGAAACAAAGCAGTTA+TGG | + | chr4_4:72842264-72842283 | Msa0701440:CDS | 35.0% | |
| TAGAAACAAAGCAGTTATGG+AGG | + | chr4_4:72842267-72842286 | Msa0701440:CDS | 35.0% | |
| !! | CCTTCTTTTCAATTCTGAGA+TGG | - | chr4_4:72842425-72842444 | None:intergenic | 35.0% |
| CCATCTCAGAATTGAAAAGA+AGG | + | chr4_4:72842422-72842441 | Msa0701440:CDS | 35.0% | |
| GCTAGCATTATAGTAACTTG+AGG | - | chr4_4:72842475-72842494 | None:intergenic | 35.0% | |
| !! | CTTCTTGATGGTGATTTCAT+AGG | - | chr4_4:72842530-72842549 | None:intergenic | 35.0% |
| AAGAAATGGAATCAGCAAAC+TGG | + | chr4_4:72842773-72842792 | Msa0701440:CDS | 35.0% | |
| AGAAATGGAATCAGCAAACT+GGG | + | chr4_4:72842774-72842793 | Msa0701440:CDS | 35.0% | |
| !! | AAAACAACGATGACTTGGTT+TGG | - | chr4_4:72842845-72842864 | None:intergenic | 35.0% |
| AAAGCAAAACAACGATGACT+TGG | - | chr4_4:72842850-72842869 | None:intergenic | 35.0% | |
| AACTTGGCAAAAGATGAGTT+TGG | - | chr4_4:72843027-72843046 | None:intergenic | 35.0% | |
| ! | TCAAGTTGTCCATGCTAAAA+TGG | + | chr4_4:72843065-72843084 | Msa0701440:CDS | 35.0% |
| !! | AAGAACACTCCATTTTAGCA+TGG | - | chr4_4:72843077-72843096 | None:intergenic | 35.0% |
| TGTTTGGAAATTTGAACCAG+AGG | + | chr4_4:72843097-72843116 | Msa0701440:CDS | 35.0% | |
| GCTAAGAAAAAAGCTGAATC+TGG | - | chr4_4:72843147-72843166 | None:intergenic | 35.0% | |
| TTCAGGTCAAGAAGAATACT+AGG | + | chr4_4:72843241-72843260 | Msa0701440:CDS | 35.0% | |
| TCAGTTTCAACTTCATGTTC+AGG | + | chr4_4:72843300-72843319 | Msa0701440:CDS | 35.0% | |
| CAGTTTCAACTTCATGTTCA+GGG | + | chr4_4:72843301-72843320 | Msa0701440:CDS | 35.0% | |
| AGTTTCAACTTCATGTTCAG+GGG | + | chr4_4:72843302-72843321 | Msa0701440:CDS | 35.0% | |
| CAACTCACATCTCAAAGTGA+AGG | + | chr4_4:72842174-72842193 | Msa0701440:CDS | 40.0% | |
| TAAGCACCAACAGAAGAACA+AGG | + | chr4_4:72842243-72842262 | Msa0701440:CDS | 40.0% | |
| ! | TTATGGAGGCTCTAATAGCA+AGG | + | chr4_4:72842281-72842300 | Msa0701440:CDS | 40.0% |
| ! | CTAATAGCAAGGCTTTTTGC+TGG | + | chr4_4:72842292-72842311 | Msa0701440:CDS | 40.0% |
| ATCACCATCAAGAAGCTTCA+AGG | + | chr4_4:72842535-72842554 | Msa0701440:CDS | 40.0% | |
| TTCTCCTTGAAGCTTCTTGA+TGG | - | chr4_4:72842542-72842561 | None:intergenic | 40.0% | |
| TGGTGAAAACTGCATTTGGA+TGG | - | chr4_4:72842825-72842844 | None:intergenic | 40.0% | |
| !! | GGTTTGGTGAAAACTGCATT+TGG | - | chr4_4:72842829-72842848 | None:intergenic | 40.0% |
| !! | TTTCTTAGCTTTTGCGGAGA+TGG | + | chr4_4:72843158-72843177 | Msa0701440:CDS | 40.0% |
| GAAGAATACTAGGTTCTCTG+AGG | + | chr4_4:72843251-72843270 | Msa0701440:CDS | 40.0% | |
| !! | TAGGTTCTCTGAGGTTTACA+TGG | + | chr4_4:72843260-72843279 | Msa0701440:CDS | 40.0% |
| ATTCTAATTCCGGCGAGTTT+CGG | + | chr4_4:72843334-72843353 | Msa0701440:CDS | 40.0% | |
| GTCTTACCAATGTTGAAACC+AGG | - | chr4_4:72843378-72843397 | None:intergenic | 40.0% | |
| TAAGACAGTGATACAGAGTC+AGG | + | chr4_4:72843392-72843411 | Msa0701440:CDS | 40.0% | |
| GAGTCAGGTTTATCTGTCTT+TGG | + | chr4_4:72843407-72843426 | Msa0701440:CDS | 40.0% | |
| TCAGGTTTATCTGTCTTTGG+TGG | + | chr4_4:72843410-72843429 | Msa0701440:CDS | 40.0% | |
| CAACTCACATCTCAAAGTGA+AGG | + | chr4_4:72842174-72842193 | Msa0701440:CDS | 40.0% | |
| TAAGCACCAACAGAAGAACA+AGG | + | chr4_4:72842243-72842262 | Msa0701440:CDS | 40.0% | |
| ! | TTATGGAGGCTCTAATAGCA+AGG | + | chr4_4:72842281-72842300 | Msa0701440:CDS | 40.0% |
| ! | CTAATAGCAAGGCTTTTTGC+TGG | + | chr4_4:72842292-72842311 | Msa0701440:CDS | 40.0% |
| ATCACCATCAAGAAGCTTCA+AGG | + | chr4_4:72842535-72842554 | Msa0701440:CDS | 40.0% | |
| TTCTCCTTGAAGCTTCTTGA+TGG | - | chr4_4:72842542-72842561 | None:intergenic | 40.0% | |
| TGGTGAAAACTGCATTTGGA+TGG | - | chr4_4:72842825-72842844 | None:intergenic | 40.0% | |
| !! | GGTTTGGTGAAAACTGCATT+TGG | - | chr4_4:72842829-72842848 | None:intergenic | 40.0% |
| !! | TTTCTTAGCTTTTGCGGAGA+TGG | + | chr4_4:72843158-72843177 | Msa0701440:CDS | 40.0% |
| GAAGAATACTAGGTTCTCTG+AGG | + | chr4_4:72843251-72843270 | Msa0701440:CDS | 40.0% | |
| !! | TAGGTTCTCTGAGGTTTACA+TGG | + | chr4_4:72843260-72843279 | Msa0701440:CDS | 40.0% |
| ATTCTAATTCCGGCGAGTTT+CGG | + | chr4_4:72843334-72843353 | Msa0701440:CDS | 40.0% | |
| GTCTTACCAATGTTGAAACC+AGG | - | chr4_4:72843378-72843397 | None:intergenic | 40.0% | |
| TAAGACAGTGATACAGAGTC+AGG | + | chr4_4:72843392-72843411 | Msa0701440:CDS | 40.0% | |
| GAGTCAGGTTTATCTGTCTT+TGG | + | chr4_4:72843407-72843426 | Msa0701440:CDS | 40.0% | |
| TCAGGTTTATCTGTCTTTGG+TGG | + | chr4_4:72843410-72843429 | Msa0701440:CDS | 40.0% | |
| ! | CAGAATTCACTAGCTTCCTC+TGG | - | chr4_4:72843116-72843135 | None:intergenic | 45.0% |
| CAGAGGAAGCTAGTGAATTC+TGG | + | chr4_4:72843114-72843133 | Msa0701440:CDS | 45.0% | |
| AGGAAGCTAGTGAATTCTGG+AGG | + | chr4_4:72843117-72843136 | Msa0701440:CDS | 45.0% | |
| GGAAGCTAGTGAATTCTGGA+GGG | + | chr4_4:72843118-72843137 | Msa0701440:CDS | 45.0% | |
| CGTTTGGACACTGCATTACT+TGG | + | chr4_4:72843188-72843207 | Msa0701440:CDS | 45.0% | |
| TTCTAATTCCGGCGAGTTTC+GGG | + | chr4_4:72843335-72843354 | Msa0701440:CDS | 45.0% | |
| ! | CAGAATTCACTAGCTTCCTC+TGG | - | chr4_4:72843116-72843135 | None:intergenic | 45.0% |
| CAGAGGAAGCTAGTGAATTC+TGG | + | chr4_4:72843114-72843133 | Msa0701440:CDS | 45.0% | |
| AGGAAGCTAGTGAATTCTGG+AGG | + | chr4_4:72843117-72843136 | Msa0701440:CDS | 45.0% | |
| GGAAGCTAGTGAATTCTGGA+GGG | + | chr4_4:72843118-72843137 | Msa0701440:CDS | 45.0% | |
| CGTTTGGACACTGCATTACT+TGG | + | chr4_4:72843188-72843207 | Msa0701440:CDS | 45.0% | |
| TTCTAATTCCGGCGAGTTTC+GGG | + | chr4_4:72843335-72843354 | Msa0701440:CDS | 45.0% | |
| ACAAGCAGCTGATCAAGCAG+TGG | + | chr4_4:72842384-72842403 | Msa0701440:CDS | 50.0% | |
| !! | CGAGTTTCGGGTGGTTTTCA+CGG | + | chr4_4:72843347-72843366 | Msa0701440:CDS | 50.0% |
| GTGGTGCCTGGTTTCAACAT+TGG | + | chr4_4:72843369-72843388 | Msa0701440:CDS | 50.0% | |
| ACAAGCAGCTGATCAAGCAG+TGG | + | chr4_4:72842384-72842403 | Msa0701440:CDS | 50.0% | |
| !! | CGAGTTTCGGGTGGTTTTCA+CGG | + | chr4_4:72843347-72843366 | Msa0701440:CDS | 50.0% |
| GTGGTGCCTGGTTTCAACAT+TGG | + | chr4_4:72843369-72843388 | Msa0701440:CDS | 50.0% | |
| AGCAGCTGATCAAGCAGTGG+TGG | + | chr4_4:72842387-72842406 | Msa0701440:CDS | 55.0% | |
| TAATTCCGGCGAGTTTCGGG+TGG | + | chr4_4:72843338-72843357 | Msa0701440:CDS | 55.0% | |
| GAAAACCACCCGAAACTCGC+CGG | - | chr4_4:72843346-72843365 | None:intergenic | 55.0% | |
| !! | GTTTCGGGTGGTTTTCACGG+TGG | + | chr4_4:72843350-72843369 | Msa0701440:CDS | 55.0% |
| AGCAGCTGATCAAGCAGTGG+TGG | + | chr4_4:72842387-72842406 | Msa0701440:CDS | 55.0% | |
| TAATTCCGGCGAGTTTCGGG+TGG | + | chr4_4:72843338-72843357 | Msa0701440:CDS | 55.0% | |
| GAAAACCACCCGAAACTCGC+CGG | - | chr4_4:72843346-72843365 | None:intergenic | 55.0% | |
| !! | GTTTCGGGTGGTTTTCACGG+TGG | + | chr4_4:72843350-72843369 | Msa0701440:CDS | 55.0% |
| CGGAGATGGCAAAGCGCGTT+TGG | + | chr4_4:72843172-72843191 | Msa0701440:CDS | 60.0% | |
| ! | GTGGTTTTCACGGTGGTGCC+TGG | + | chr4_4:72843357-72843376 | Msa0701440:CDS | 60.0% |
| CGGAGATGGCAAAGCGCGTT+TGG | + | chr4_4:72843172-72843191 | Msa0701440:CDS | 60.0% | |
| ! | GTGGTTTTCACGGTGGTGCC+TGG | + | chr4_4:72843357-72843376 | Msa0701440:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 72842049 | 72843452 | 72842049 | ID=Msa0701440;Name=Msa0701440 |
| chr4_4 | mRNA | 72842049 | 72843452 | 72842049 | ID=Msa0701440-mRNA-1;Parent=Msa0701440;Name=Msa0701440-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|-1|0|1|-1|1|1|0|467 |
| chr4_4 | exon | 72842049 | 72843452 | 72842049 | ID=Msa0701440-mRNA-1:exon:22280;Parent=Msa0701440-mRNA-1 |
| chr4_4 | CDS | 72842049 | 72843452 | 72842049 | ID=Msa0701440-mRNA-1:cds;Parent=Msa0701440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
