Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707370 | PNY08875.1 | 99.223 | 386 | 3 | 0 | 1 | 386 | 226 | 611 | 0.0 | 795 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707370 | sp|Q39828|SDL5A_SOYBN | 95.855 | 386 | 16 | 0 | 1 | 386 | 225 | 610 | 0.0 | 773 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707370 | A0A2K3P0Q5 | 99.223 | 386 | 3 | 0 | 1 | 386 | 226 | 611 | 0.0 | 795 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037180 | Msa0707370 | 0.809530 | 1.808214e-50 | -8.615850e-47 |
| Msa0037650 | Msa0707370 | -0.801083 | 1.064551e-48 | -8.615850e-47 |
| Msa0660150 | Msa0707370 | 0.804820 | 1.797659e-49 | -8.615850e-47 |
| Msa0701800 | Msa0707370 | -0.801132 | 1.040212e-48 | -8.615850e-47 |
| Msa0707370 | Msa0758780 | -0.804731 | 1.876308e-49 | -8.615850e-47 |
| Msa0707370 | Msa0758810 | -0.810081 | 1.375929e-50 | -8.615850e-47 |
| Msa0707370 | Msa0807870 | -0.826168 | 3.144691e-54 | -8.615850e-47 |
| Msa0707370 | Msa1089220 | 0.809370 | 1.956958e-50 | -8.615850e-47 |
| Msa0707370 | Msa1129880 | -0.806313 | 8.739713e-50 | -8.615850e-47 |
| Msa0707370 | Msa1202470 | 0.822749 | 2.005359e-53 | -8.615850e-47 |
| Msa0707370 | Msa1259730 | 0.809740 | 1.629504e-50 | -8.615850e-47 |
| Msa0707370 | Msa1364110 | 0.806589 | 7.644143e-50 | -8.615850e-47 |
| Msa0707370 | Msa1368390 | 0.825925 | 3.592153e-54 | -8.615850e-47 |
| Msa0707370 | Msa1377980 | -0.802133 | 6.482723e-49 | -8.615850e-47 |
| Msa0707370 | Msa1408280 | -0.801481 | 8.824714e-49 | -8.615850e-47 |
| Msa0707370 | Msa1457770 | 0.825186 | 5.376875e-54 | -8.615850e-47 |
| Msa0225070 | Msa0707370 | -0.804552 | 2.044684e-49 | -8.615850e-47 |
| Msa0386880 | Msa0707370 | 0.808821 | 2.565656e-50 | -8.615850e-47 |
| Msa0474570 | Msa0707370 | 0.833690 | 4.613936e-56 | -8.615850e-47 |
| Msa0265250 | Msa0707370 | 0.812769 | 3.588350e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707370 | MtrunA17_Chr8g0388271 | 99.223 | 386 | 3 | 0 | 1 | 386 | 225 | 610 | 0.0 | 793 |
| Msa0707370 | MtrunA17_Chr5g0396561 | 88.860 | 386 | 43 | 0 | 1 | 386 | 226 | 611 | 0.0 | 731 |
| Msa0707370 | MtrunA17_Chr8g0346971 | 79.948 | 384 | 77 | 0 | 1 | 384 | 233 | 616 | 0.0 | 666 |
| Msa0707370 | MtrunA17_Chr4g0055051 | 61.917 | 386 | 142 | 2 | 1 | 385 | 225 | 606 | 0.0 | 526 |
| Msa0707370 | MtrunA17_Chr7g0233071 | 61.039 | 385 | 149 | 1 | 1 | 384 | 231 | 615 | 0.0 | 519 |
| Msa0707370 | MtrunA17_Chr8g0337041 | 59.012 | 405 | 145 | 1 | 1 | 384 | 231 | 635 | 0.0 | 516 |
| Msa0707370 | MtrunA17_Chr8g0391891 | 57.614 | 394 | 154 | 2 | 1 | 384 | 225 | 615 | 2.37e-180 | 514 |
| Msa0707370 | MtrunA17_Chr1g0161401 | 65.909 | 220 | 75 | 0 | 1 | 220 | 96 | 315 | 1.16e-112 | 332 |
| Msa0707370 | MtrunA17_Chr1g0161411 | 49.405 | 168 | 80 | 1 | 222 | 384 | 3 | 170 | 1.66e-57 | 185 |
| Msa0707370 | MtrunA17_Chr4g0013611 | 30.147 | 272 | 174 | 3 | 11 | 271 | 235 | 501 | 7.89e-37 | 142 |
| Msa0707370 | MtrunA17_Chr4g0076951 | 29.412 | 272 | 176 | 3 | 11 | 271 | 232 | 498 | 1.44e-35 | 138 |
| Msa0707370 | MtrunA17_Chr2g0279671 | 25.912 | 274 | 190 | 4 | 1 | 265 | 237 | 506 | 3.41e-20 | 92.8 |
| Msa0707370 | MtrunA17_Chr4g0049731 | 25.912 | 274 | 190 | 4 | 1 | 265 | 228 | 497 | 7.57e-19 | 88.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707370 | AT5G42080.4 | 82.902 | 386 | 66 | 0 | 1 | 386 | 225 | 610 | 0.0 | 694 |
| Msa0707370 | AT5G42080.1 | 82.902 | 386 | 66 | 0 | 1 | 386 | 225 | 610 | 0.0 | 694 |
| Msa0707370 | AT5G42080.3 | 81.865 | 386 | 64 | 1 | 1 | 386 | 225 | 604 | 0.0 | 679 |
| Msa0707370 | AT3G61760.1 | 79.275 | 386 | 80 | 0 | 1 | 386 | 225 | 610 | 0.0 | 664 |
| Msa0707370 | AT3G61760.2 | 80.580 | 345 | 67 | 0 | 1 | 345 | 225 | 569 | 0.0 | 603 |
| Msa0707370 | AT3G60190.1 | 60.969 | 392 | 145 | 1 | 1 | 384 | 231 | 622 | 0.0 | 529 |
| Msa0707370 | AT1G14830.1 | 61.082 | 388 | 147 | 2 | 1 | 384 | 226 | 613 | 0.0 | 521 |
| Msa0707370 | AT2G44590.2 | 56.736 | 386 | 164 | 2 | 1 | 384 | 209 | 593 | 5.32e-167 | 480 |
| Msa0707370 | AT2G44590.3 | 56.736 | 386 | 164 | 2 | 1 | 384 | 226 | 610 | 5.76e-167 | 481 |
| Msa0707370 | AT2G44590.1 | 56.589 | 387 | 164 | 3 | 1 | 384 | 209 | 594 | 2.32e-165 | 476 |
| Msa0707370 | AT3G61760.3 | 80.000 | 220 | 44 | 0 | 1 | 220 | 225 | 444 | 7.99e-133 | 389 |
| Msa0707370 | AT5G42080.2 | 83.415 | 205 | 34 | 0 | 1 | 205 | 225 | 429 | 3.89e-129 | 378 |
| Msa0707370 | AT1G59610.1 | 31.183 | 279 | 176 | 4 | 3 | 271 | 226 | 498 | 3.18e-38 | 146 |
| Msa0707370 | AT1G10290.1 | 31.541 | 279 | 175 | 4 | 3 | 271 | 226 | 498 | 8.70e-38 | 145 |
| Msa0707370 | AT4G33650.1 | 24.632 | 272 | 196 | 3 | 1 | 265 | 255 | 524 | 6.19e-16 | 80.1 |
| Msa0707370 | AT4G33650.2 | 24.632 | 272 | 196 | 3 | 1 | 265 | 255 | 524 | 6.84e-16 | 80.1 |
| Msa0707370 | AT2G14120.4 | 23.704 | 270 | 195 | 3 | 2 | 263 | 241 | 507 | 1.24e-15 | 79.3 |
| Msa0707370 | AT2G14120.2 | 23.529 | 272 | 197 | 3 | 2 | 265 | 241 | 509 | 1.26e-15 | 79.3 |
| Msa0707370 | AT2G14120.1 | 23.529 | 272 | 197 | 3 | 2 | 265 | 241 | 509 | 1.35e-15 | 79.0 |
Find 109 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGGTTCATTCGCTATTAA+AGG | 0.155423 | 4_4:-80599734 | Msa0707370:intron |
| GAACGAGGATCCTGCAATTA+TGG | 0.275871 | 4_4:-80598034 | Msa0707370:CDS |
| AAGCCTGTTGCAGCTGATGC+TGG | 0.280429 | 4_4:-80600716 | Msa0707370:CDS |
| TGAAACCGAACTGGCTCGTT+TGG | 0.280984 | 4_4:-80600741 | Msa0707370:CDS |
| CTGGTTTACGGGCTGAGGTT+GGG | 0.283613 | 4_4:-80598842 | Msa0707370:CDS |
| TTAGCTAGGTGTTTATATTC+AGG | 0.300523 | 4_4:+80600987 | None:intergenic |
| TCCGAAGAATGAAAATTAAA+TGG | 0.319258 | 4_4:+80597886 | None:intergenic |
| ATCTGACGGTTGATTTCTTT+CGG | 0.331884 | 4_4:-80598737 | Msa0707370:CDS |
| TGAAGCAATACCCTGGTTTA+CGG | 0.336223 | 4_4:-80598854 | Msa0707370:CDS |
| CAGAATGGGGTCTGAGCATC+TGG | 0.343447 | 4_4:-80600964 | Msa0707370:CDS |
| TTGGAAACGCGCCTATGTAT+AGG | 0.351088 | 4_4:+80597730 | None:intergenic |
| GATATAATGATTCTTATCTA+AGG | 0.354606 | 4_4:-80598659 | Msa0707370:CDS |
| AGCTTTCAATGGAAAATATA+AGG | 0.374495 | 4_4:-80600196 | Msa0707370:CDS |
| AGACTGAATGCCTGGAATCT+TGG | 0.385851 | 4_4:+80600790 | None:intergenic |
| TGGTTTACGGGCTGAGGTTG+GGG | 0.387468 | 4_4:-80598841 | Msa0707370:CDS |
| GAAGCAATACCCTGGTTTAC+GGG | 0.387693 | 4_4:-80598853 | Msa0707370:CDS |
| GCATCAACAGCTGCCTCGGC+AGG | 0.388371 | 4_4:+80600074 | None:intergenic |
| CCTGGTTTACGGGCTGAGGT+TGG | 0.394247 | 4_4:-80598843 | Msa0707370:CDS |
| AACTGCATCTATTTCAGCTT+GGG | 0.397169 | 4_4:+80597966 | None:intergenic |
| AATCCACTCTAGTTACAATC+AGG | 0.400990 | 4_4:-80600100 | Msa0707370:CDS |
| GTTTGACAAGCAGCTTTCAA+TGG | 0.401921 | 4_4:-80600207 | Msa0707370:CDS |
| AACACTACAACTGGTCGATA+TGG | 0.405406 | 4_4:-80598769 | Msa0707370:CDS |
| GAAACCGAACTGGCTCGTTT+GGG | 0.407691 | 4_4:-80600740 | Msa0707370:CDS |
| TGGAAACGCGCCTATGTATA+GGG | 0.407908 | 4_4:+80597731 | None:intergenic |
| CTAATTAGAGACTGAATGCC+TGG | 0.416975 | 4_4:+80600782 | None:intergenic |
| AAATTTAATAATATTTAAGT+AGG | 0.426568 | 4_4:+80597699 | None:intergenic |
| TCTTCGGACTGCAAGTATCT+AGG | 0.428347 | 4_4:-80597871 | Msa0707370:three_prime_UTR |
| AAACACCTAGCTAACAGAAT+GGG | 0.429971 | 4_4:-80600978 | Msa0707370:CDS |
| CTTTCCCAAACGAGCCAGTT+CGG | 0.441013 | 4_4:+80600736 | None:intergenic |
| ACCCCAGCATCAGCTGCAAC+AGG | 0.443010 | 4_4:+80600713 | None:intergenic |
| ATATTCAAAGACCATCTTGA+TGG | 0.447318 | 4_4:-80600399 | Msa0707370:CDS |
| CCATTGTTTATTGTCAAGTA+CGG | 0.448290 | 4_4:-80598286 | Msa0707370:CDS |
| CAAAAGGGCAACACTACAAC+TGG | 0.449599 | 4_4:-80598778 | Msa0707370:CDS |
| CAAAGCTGTTAGTGAGACTC+TGG | 0.449716 | 4_4:-80599701 | Msa0707370:intron |
| GAATGAGAGATGAAAGCAAA+AGG | 0.450845 | 4_4:-80598794 | Msa0707370:CDS |
| TGAGTGAGATGATTGATTGA+TGG | 0.457135 | 4_4:-80597772 | Msa0707370:three_prime_UTR |
| CACTAACAGCTTTGTGAACC+AGG | 0.457295 | 4_4:+80599710 | None:intergenic |
| AGCCTGTTGCAGCTGATGCT+GGG | 0.466361 | 4_4:-80600715 | Msa0707370:CDS |
| ATTTAAGTAGGGACTAATGT+TGG | 0.467278 | 4_4:+80597711 | None:intergenic |
| CCAACCTCAGCCCGTAAACC+AGG | 0.468070 | 4_4:+80598843 | None:intergenic |
| CAGACCCCATTCTGTTAGCT+AGG | 0.470784 | 4_4:+80600973 | None:intergenic |
| AGCTCCCTGCTGCTCTGAAA+AGG | 0.472526 | 4_4:-80600235 | Msa0707370:CDS |
| CATATAGGTTAAAGTTCCCT+TGG | 0.473662 | 4_4:-80601103 | Msa0707370:CDS |
| AAATGAAATTGAAACCGAAC+TGG | 0.477658 | 4_4:-80600750 | Msa0707370:CDS |
| CTGAAATAGATGCAGTTGCT+TGG | 0.485487 | 4_4:-80597960 | Msa0707370:CDS |
| TTGCTTGCTCAGATGTTGGA+AGG | 0.493499 | 4_4:-80601131 | Msa0707370:exon |
| AGACGACGGTATCCTTGCTC+TGG | 0.498380 | 4_4:+80600128 | None:intergenic |
| CTACGACGTTCCATAATTGC+AGG | 0.498628 | 4_4:+80598024 | None:intergenic |
| CAACTGGTCGATATGGAGTC+TGG | 0.501050 | 4_4:-80598762 | Msa0707370:CDS |
| GTAATCAAGTCCAAGATTCC+AGG | 0.501222 | 4_4:-80600800 | Msa0707370:CDS |
| CAACTGCATCTATTTCAGCT+TGG | 0.501627 | 4_4:+80597965 | None:intergenic |
| ATACCCTGGTTTACGGGCTG+AGG | 0.506554 | 4_4:-80598847 | Msa0707370:CDS |
| CATTGTTTATTGTCAAGTAC+GGG | 0.511383 | 4_4:-80598285 | Msa0707370:CDS |
| TGTTGGAAGGGAGAGCATAT+AGG | 0.515104 | 4_4:-80601118 | Msa0707370:CDS |
| GAGTGAGATGATTGATTGAT+GGG | 0.517363 | 4_4:-80597771 | Msa0707370:three_prime_UTR |
| GATTCTTATCTAAGGCGAAT+CGG | 0.517945 | 4_4:-80598651 | Msa0707370:intron |
| ATTGTTGCTGATTGAGCAAA+CGG | 0.519636 | 4_4:-80597628 | Msa0707370:three_prime_UTR |
| TGCTTGCTCAGATGTTGGAA+GGG | 0.521748 | 4_4:-80601130 | Msa0707370:exon |
| CCACCCTTGTCCACATCTTG+AGG | 0.522131 | 4_4:+80598708 | None:intergenic |
| TACCGCATCAACAGCTGCCT+CGG | 0.523525 | 4_4:+80600070 | None:intergenic |
| TAAACACCTAGCTAACAGAA+TGG | 0.524545 | 4_4:-80600979 | Msa0707370:CDS |
| GGGCAAGTTATATGCAATCA+TGG | 0.524553 | 4_4:-80600445 | Msa0707370:CDS |
| TAGTGGCCTTGCAAAGAGAC+TGG | 0.526892 | 4_4:-80598004 | Msa0707370:CDS |
| TCAATTTCCTACAGGCGACC+TGG | 0.527613 | 4_4:-80600290 | Msa0707370:intron |
| CTATCGAAAATTGAATGAGT+GGG | 0.536130 | 4_4:+80598681 | None:intergenic |
| CAGTAATGAGGACAAACGCT+TGG | 0.541024 | 4_4:+80598056 | None:intergenic |
| CTATTTCAGCTTGGGCACTT+CGG | 0.542999 | 4_4:+80597974 | None:intergenic |
| TGCCGAGGCAGCTGTTGATG+CGG | 0.543898 | 4_4:-80600072 | Msa0707370:intron |
| AATTTAATAATATTTAAGTA+GGG | 0.543975 | 4_4:+80597700 | None:intergenic |
| TCATTCGCTATTAAAGGACC+TGG | 0.558428 | 4_4:-80599728 | Msa0707370:CDS |
| AGGTTAAAGTTCCCTTGGAT+CGG | 0.560301 | 4_4:-80601098 | Msa0707370:CDS |
| AATGAGAGATGAAAGCAAAA+GGG | 0.561742 | 4_4:-80598793 | Msa0707370:CDS |
| AAACTTATTACAGAAGCTGA+TGG | 0.561888 | 4_4:-80600173 | Msa0707370:CDS |
| TCTATCGAAAATTGAATGAG+TGG | 0.564548 | 4_4:+80598680 | None:intergenic |
| TACAATCAGGGGCCCTGCCG+AGG | 0.565034 | 4_4:-80600087 | Msa0707370:CDS |
| CATCTTATTGCTCCAGAGCA+AGG | 0.566493 | 4_4:-80600140 | Msa0707370:CDS |
| CATCAACAGCTGCCTCGGCA+GGG | 0.569211 | 4_4:+80600075 | None:intergenic |
| TCGGAAGCTTCCTCAAGATG+TGG | 0.572910 | 4_4:-80598718 | Msa0707370:CDS |
| CTGTTCACAACACCGATCCA+AGG | 0.576821 | 4_4:+80601086 | None:intergenic |
| CTGGAGCAATAAGATGAGGT+TGG | 0.582750 | 4_4:+80600147 | None:intergenic |
| TGACAATAAACAATGGACTT+CGG | 0.583582 | 4_4:+80598293 | None:intergenic |
| AGGATCCTCGTTCAGTAATG+AGG | 0.584711 | 4_4:+80598044 | None:intergenic |
| GCCCCTGATTGTAACTAGAG+TGG | 0.598316 | 4_4:+80600097 | None:intergenic |
| ATCCACTCTAGTTACAATCA+GGG | 0.605709 | 4_4:-80600099 | Msa0707370:CDS |
| AGCAAACGGTGAAGCACACG+TGG | 0.605780 | 4_4:-80597614 | None:intergenic |
| GCTTCCTCAAGATGTGGACA+AGG | 0.607803 | 4_4:-80598712 | Msa0707370:CDS |
| ACACATACACGCCATCAAGA+TGG | 0.610251 | 4_4:+80600388 | None:intergenic |
| GCCTGTTGCAGCTGATGCTG+GGG | 0.614544 | 4_4:-80600714 | Msa0707370:intron |
| TATGGAGTCTGGCTATCTGA+CGG | 0.622814 | 4_4:-80598751 | Msa0707370:CDS |
| ACAACTCCAGTCTCTTTGCA+AGG | 0.623060 | 4_4:+80597998 | None:intergenic |
| TGCTCTGGAGCAATAAGATG+AGG | 0.624218 | 4_4:+80600143 | None:intergenic |
| CCGTACTTGACAATAAACAA+TGG | 0.625270 | 4_4:+80598286 | None:intergenic |
| CAGGATTTGAAGCAATACCC+TGG | 0.628775 | 4_4:-80598861 | Msa0707370:CDS |
| ACATATCACGTTTATACTAG+AGG | 0.631582 | 4_4:-80597920 | Msa0707370:three_prime_UTR |
| TGTTCACAACACCGATCCAA+GGG | 0.632790 | 4_4:+80601087 | None:intergenic |
| TCTGGCGAAGATGCTCTCAA+AGG | 0.634471 | 4_4:-80600946 | Msa0707370:intron |
| TCCACTCTAGTTACAATCAG+GGG | 0.638669 | 4_4:-80600098 | Msa0707370:CDS |
| AACACCTAGCTAACAGAATG+GGG | 0.640990 | 4_4:-80600977 | Msa0707370:CDS |
| GCAATTATGGAACGTCGTAG+TGG | 0.642760 | 4_4:-80598021 | Msa0707370:CDS |
| TGTTTATTGTCAAGTACGGG+AGG | 0.645558 | 4_4:-80598282 | Msa0707370:CDS |
| CCTCAAGATGTGGACAAGGG+TGG | 0.645800 | 4_4:-80598708 | Msa0707370:CDS |
| TATCGAAAATTGAATGAGTG+GGG | 0.658642 | 4_4:+80598682 | None:intergenic |
| CAACCTCAGCCCGTAAACCA+GGG | 0.671483 | 4_4:+80598844 | None:intergenic |
| TTTGTCCTCATTACTGAACG+AGG | 0.680245 | 4_4:-80598049 | Msa0707370:CDS |
| ATTTCCTACAGGCGACCTGG+AGG | 0.691883 | 4_4:-80600287 | Msa0707370:intron |
| CTTCCTCAAGATGTGGACAA+GGG | 0.710629 | 4_4:-80598711 | Msa0707370:CDS |
| GAGTGGATTCAATGAGACGA+CGG | 0.714501 | 4_4:+80600114 | None:intergenic |
| ATGTTGACATGATTGCTGCA+AGG | 0.728270 | 4_4:-80601040 | Msa0707370:CDS |
| ATCAGCAACAATTAACAACG+AGG | 0.772172 | 4_4:+80597639 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAATGGATATTATGT+GGG | + | chr4_4:80598175-80598194 | None:intergenic | 15.0% |
| !!! | TTTAAGTTCATCAAAATAAA+TGG | + | chr4_4:80598187-80598206 | None:intergenic | 15.0% |
| !!! | AAATTAGTGATTTTTCTAAT+TGG | - | chr4_4:80598877-80598896 | Msa0707370:intron | 15.0% |
| !! | TAAATAAATTGTATAATTGC+TGG | - | chr4_4:80599133-80599152 | Msa0707370:intron | 15.0% |
| !!! | ACTTCACTTTTTAAATATAT+TGG | + | chr4_4:80600288-80600307 | None:intergenic | 15.0% |
| !!! | AATAAATGAAAAGTATAATC+AGG | + | chr4_4:80600573-80600592 | None:intergenic | 15.0% |
| !!! | TTGATTTTTATATCAGCATT+TGG | - | chr4_4:80597923-80597942 | Msa0707370:three_prime_UTR | 20.0% |
| !! | CAAAATAAATGGATATTATG+TGG | + | chr4_4:80598176-80598195 | None:intergenic | 20.0% |
| !! | CATAAGTTCTCAAAAAAATT+GGG | + | chr4_4:80598750-80598769 | None:intergenic | 20.0% |
| !! | ACATAAGTTCTCAAAAAAAT+TGG | + | chr4_4:80598751-80598770 | None:intergenic | 20.0% |
| !!! | AATTTTTTTGAGAACTTATG+TGG | - | chr4_4:80598750-80598769 | Msa0707370:CDS | 20.0% |
| !! | TTGAAAGCAGAAAATTTATA+GGG | + | chr4_4:80599374-80599393 | None:intergenic | 20.0% |
| !!! | CAAAATTTTCCTTTGATTTT+TGG | + | chr4_4:80599558-80599577 | None:intergenic | 20.0% |
| !!! | CAAAAATCAAAGGAAAATTT+TGG | - | chr4_4:80599556-80599575 | Msa0707370:intron | 20.0% |
| !!! | TTATCTTTTTGTAATGCTAT+GGG | - | chr4_4:80599692-80599711 | Msa0707370:intron | 20.0% |
| !! | ATGAACAACTATTACAAAAA+GGG | + | chr4_4:80599795-80599814 | None:intergenic | 20.0% |
| !! | CATGATTAAATTAATACAGT+TGG | - | chr4_4:80599812-80599831 | Msa0707370:intron | 20.0% |
| !! | GATATAATGATTCTTATCTA+AGG | - | chr4_4:80600092-80600111 | Msa0707370:CDS | 20.0% |
| !!! | AATTTTGTCATATGTCAATA+TGG | - | chr4_4:80600409-80600428 | Msa0707370:CDS | 20.0% |
| !!! | ACCATTTAATTTTCATTCTT+CGG | - | chr4_4:80600864-80600883 | Msa0707370:intron | 20.0% |
| ! | ATCAATATGACTTTAGTTGT+TGG | + | chr4_4:80597908-80597927 | None:intergenic | 25.0% |
| ! | TTGGAACAGAGAATTTAAAA+TGG | + | chr4_4:80598085-80598104 | None:intergenic | 25.0% |
| ! | GATGAACTTAAATATTGATG+TGG | - | chr4_4:80598195-80598214 | Msa0707370:intron | 25.0% |
| ! | CAACATGAAAACACTTAATA+AGG | + | chr4_4:80598258-80598277 | None:intergenic | 25.0% |
| !! | TTATAAATTTTATCACCTCC+AGG | + | chr4_4:80598482-80598501 | None:intergenic | 25.0% |
| ! | AGCTTTCAATGGAAAATATA+AGG | - | chr4_4:80598555-80598574 | Msa0707370:intron | 25.0% |
| !! | TAATTTACAGCTTTTAGACA+GGG | + | chr4_4:80598863-80598882 | None:intergenic | 25.0% |
| ! | GTTGAAAGCAGAAAATTTAT+AGG | + | chr4_4:80599375-80599394 | None:intergenic | 25.0% |
| !! | TGAACTTTTGTAAAAAAAGC+AGG | + | chr4_4:80599405-80599424 | None:intergenic | 25.0% |
| !!! | GTTCCAAATGACTTTTTTTA+AGG | - | chr4_4:80599433-80599452 | Msa0707370:intron | 25.0% |
| ! | AGACCTTAAAAAAAGTCATT+TGG | + | chr4_4:80599439-80599458 | None:intergenic | 25.0% |
| ! | AATTGAAACCAGAAATTTAG+AGG | - | chr4_4:80599531-80599550 | Msa0707370:intron | 25.0% |
| !! | AAATCAAAGGAAAATTTTGG+AGG | - | chr4_4:80599559-80599578 | Msa0707370:intron | 25.0% |
| !! | AATCAAAGGAAAATTTTGGA+GGG | - | chr4_4:80599560-80599579 | Msa0707370:intron | 25.0% |
| !! | GTTATCTTTTTGTAATGCTA+TGG | - | chr4_4:80599691-80599710 | Msa0707370:intron | 25.0% |
| ! | CATGAACAACTATTACAAAA+AGG | + | chr4_4:80599796-80599815 | None:intergenic | 25.0% |
| ! | TATCATCTGTCATTGTTAAA+TGG | - | chr4_4:80600339-80600358 | Msa0707370:intron | 25.0% |
| !! | AAAAGTATAATCAGGAAACT+TGG | + | chr4_4:80600565-80600584 | None:intergenic | 25.0% |
| ! | TCCGAAGAATGAAAATTAAA+TGG | + | chr4_4:80600868-80600887 | None:intergenic | 25.0% |
| !!! | TGATGGGTTAATTATGTTTT+AGG | - | chr4_4:80600996-80601015 | Msa0707370:CDS | 25.0% |
| !!! | TTTTTTTCCGTTAGCAAAAT+AGG | - | chr4_4:80601088-80601107 | Msa0707370:CDS | 25.0% |
| TTAGCTAGGTGTTTATATTC+AGG | + | chr4_4:80597767-80597786 | None:intergenic | 30.0% | |
| ! | GCATCATTTGCTGAAATATT+AGG | - | chr4_4:80597848-80597867 | Msa0707370:three_prime_UTR | 30.0% |
| AAATGAAATTGAAACCGAAC+TGG | - | chr4_4:80598001-80598020 | Msa0707370:CDS | 30.0% | |
| TCATTTGTGTGTGTTTATAC+AGG | - | chr4_4:80598142-80598161 | Msa0707370:intron | 30.0% | |
| ! | AATATTGATGTGGTGATGAT+TGG | - | chr4_4:80598205-80598224 | Msa0707370:intron | 30.0% |
| ! | TAATATGACACTCCATTTTC+AGG | - | chr4_4:80598229-80598248 | Msa0707370:intron | 30.0% |
| ! | AATATGACACTCCATTTTCA+GGG | - | chr4_4:80598230-80598249 | Msa0707370:intron | 30.0% |
| TTAATAAGGATCCCTGAAAA+TGG | + | chr4_4:80598244-80598263 | None:intergenic | 30.0% | |
| ATATTCAAAGACCATCTTGA+TGG | - | chr4_4:80598352-80598371 | Msa0707370:CDS | 30.0% | |
| GTAGGAAATTGACACAAATA+AGG | + | chr4_4:80598453-80598472 | None:intergenic | 30.0% | |
| TATTTGTGTCAATTTCCTAC+AGG | - | chr4_4:80598453-80598472 | Msa0707370:intron | 30.0% | |
| AAACTTATTACAGAAGCTGA+TGG | - | chr4_4:80598578-80598597 | Msa0707370:intron | 30.0% | |
| ! | CTAATTTACAGCTTTTAGAC+AGG | + | chr4_4:80598864-80598883 | None:intergenic | 30.0% |
| ! | TAATCTTTTGCTGATCTCTT+TGG | - | chr4_4:80598958-80598977 | Msa0707370:intron | 30.0% |
| !! | TGTTTTGAATTGATTCTTCC+AGG | - | chr4_4:80598999-80599018 | Msa0707370:intron | 30.0% |
| ATAGCAGCAAGAAATAAAAC+TGG | + | chr4_4:80599105-80599124 | None:intergenic | 30.0% | |
| TTCTAGTGACAATGTTCATT+TGG | - | chr4_4:80599177-80599196 | Msa0707370:intron | 30.0% | |
| ATTTGGAAACAGCATTTGAA+TGG | - | chr4_4:80599194-80599213 | Msa0707370:intron | 30.0% | |
| ATTCTCAAAGCAAATACAGA+GGG | + | chr4_4:80599297-80599316 | None:intergenic | 30.0% | |
| AATTCTCAAAGCAAATACAG+AGG | + | chr4_4:80599298-80599317 | None:intergenic | 30.0% | |
| ! | TGAGATAAAGGGTTTTCTTT+CGG | - | chr4_4:80599329-80599348 | Msa0707370:intron | 30.0% |
| ! | CGTGAACTTTTGTAAAAAAC+AGG | - | chr4_4:80599502-80599521 | Msa0707370:intron | 30.0% |
| !! | TTTTTGGTCCTCTAAATTTC+TGG | + | chr4_4:80599542-80599561 | None:intergenic | 30.0% |
| TTTAGAGGACCAAAAATCAA+AGG | - | chr4_4:80599546-80599565 | Msa0707370:intron | 30.0% | |
| AATAAGCTGTTTATCCAAAC+AGG | - | chr4_4:80599602-80599621 | Msa0707370:intron | 30.0% | |
| ATAAGCTGTTTATCCAAACA+GGG | - | chr4_4:80599603-80599622 | Msa0707370:intron | 30.0% | |
| ACTCGATAATGAACAGATTT+AGG | + | chr4_4:80599629-80599648 | None:intergenic | 30.0% | |
| TGTAACTGAAATAGTGATGT+AGG | - | chr4_4:80599669-80599688 | Msa0707370:intron | 30.0% | |
| AAATTAATACAGTTGGAACC+TGG | - | chr4_4:80599819-80599838 | Msa0707370:intron | 30.0% | |
| AATGAGAGATGAAAGCAAAA+GGG | - | chr4_4:80599958-80599977 | Msa0707370:intron | 30.0% | |
| TATCGAAAATTGAATGAGTG+GGG | + | chr4_4:80600072-80600091 | None:intergenic | 30.0% | |
| CTATCGAAAATTGAATGAGT+GGG | + | chr4_4:80600073-80600092 | None:intergenic | 30.0% | |
| TCTATCGAAAATTGAATGAG+TGG | + | chr4_4:80600074-80600093 | None:intergenic | 30.0% | |
| AAAGTAGTCTCAAACTTGAA+CGG | - | chr4_4:80600135-80600154 | Msa0707370:CDS | 30.0% | |
| AAACTTGAACGGACAATATA+TGG | - | chr4_4:80600146-80600165 | Msa0707370:CDS | 30.0% | |
| ! | GTTTTGCTTATAATAGTGAC+CGG | + | chr4_4:80600197-80600216 | None:intergenic | 30.0% |
| ! | GAAGTTTTGCTTATAGTGAA+CGG | - | chr4_4:80600303-80600322 | Msa0707370:intron | 30.0% |
| ! | TGACAATAAACAATGGACTT+CGG | + | chr4_4:80600461-80600480 | None:intergenic | 30.0% |
| CCATTGTTTATTGTCAAGTA+CGG | - | chr4_4:80600465-80600484 | Msa0707370:intron | 30.0% | |
| CATTGTTTATTGTCAAGTAC+GGG | - | chr4_4:80600466-80600485 | Msa0707370:intron | 30.0% | |
| ACATATCACGTTTATACTAG+AGG | - | chr4_4:80600831-80600850 | Msa0707370:intron | 30.0% | |
| ATTTAAGTAGGGACTAATGT+TGG | + | chr4_4:80601043-80601062 | None:intergenic | 30.0% | |
| CATATAGGTTAAAGTTCCCT+TGG | - | chr4_4:80597648-80597667 | Msa0707370:three_prime_UTR | 35.0% | |
| TAAACACCTAGCTAACAGAA+TGG | - | chr4_4:80597772-80597791 | Msa0707370:three_prime_UTR | 35.0% | |
| AAACACCTAGCTAACAGAAT+GGG | - | chr4_4:80597773-80597792 | Msa0707370:three_prime_UTR | 35.0% | |
| ATTCTCTGTTCCAAAACCAT+TGG | - | chr4_4:80598091-80598110 | Msa0707370:intron | 35.0% | |
| ACAAATGACAAAAGTCTGGA+GGG | + | chr4_4:80598130-80598149 | None:intergenic | 35.0% | |
| ACACACAAATGACAAAAGTC+TGG | + | chr4_4:80598134-80598153 | None:intergenic | 35.0% | |
| AATCCACTCTAGTTACAATC+AGG | - | chr4_4:80598651-80598670 | Msa0707370:intron | 35.0% | |
| ATCCACTCTAGTTACAATCA+GGG | - | chr4_4:80598652-80598671 | Msa0707370:CDS | 35.0% | |
| TTTGAGAACTTATGTGGTAG+TGG | - | chr4_4:80598756-80598775 | Msa0707370:CDS | 35.0% | |
| TGTATGATGTGTGTTTGTCT+TGG | - | chr4_4:80598911-80598930 | Msa0707370:intron | 35.0% | |
| AATGTAAAATGAGAAGTCCC+AGG | + | chr4_4:80599082-80599101 | None:intergenic | 35.0% | |
| !! | TCTAGAAGTGCTTGAGATAA+AGG | - | chr4_4:80599317-80599336 | Msa0707370:intron | 35.0% |
| !! | CTAGAAGTGCTTGAGATAAA+GGG | - | chr4_4:80599318-80599337 | Msa0707370:intron | 35.0% |
| ! | GAGATAAAGGGTTTTCTTTC+GGG | - | chr4_4:80599330-80599349 | Msa0707370:intron | 35.0% |
| TGTCATCAAAAAAAGTCGCT+TGG | - | chr4_4:80599470-80599489 | Msa0707370:intron | 35.0% | |
| ! | TTTTGTAATGCTATGGGCAT+TGG | - | chr4_4:80599698-80599717 | Msa0707370:intron | 35.0% |
| ATTGCCAGTAAATGAAAACC+AGG | + | chr4_4:80599840-80599859 | None:intergenic | 35.0% | |
| ! | GGCAATTTTCTCATCAATAC+TGG | - | chr4_4:80599854-80599873 | Msa0707370:intron | 35.0% |
| !! | TACTGGCTTTGTTTATTCTC+AGG | - | chr4_4:80599871-80599890 | Msa0707370:intron | 35.0% |
| GAATGAGAGATGAAAGCAAA+AGG | - | chr4_4:80599957-80599976 | Msa0707370:intron | 35.0% | |
| ! | ATCTGACGGTTGATTTCTTT+CGG | - | chr4_4:80600014-80600033 | Msa0707370:intron | 35.0% |
| ! | GATTCTTATCTAAGGCGAAT+CGG | - | chr4_4:80600100-80600119 | Msa0707370:CDS | 35.0% |
| TCATAGTTTAATACTCCCTC+CGG | - | chr4_4:80600175-80600194 | Msa0707370:CDS | 35.0% | |
| ! | TTTTGCTTATAGTGAACGGA+GGG | - | chr4_4:80600307-80600326 | Msa0707370:intron | 35.0% |
| CCGTACTTGACAATAAACAA+TGG | + | chr4_4:80600468-80600487 | None:intergenic | 35.0% | |
| CAGTGAAAAAGTGATCAAGT+AGG | + | chr4_4:80600505-80600524 | None:intergenic | 35.0% | |
| TTTCACTGAGCTAGGAAAAA+TGG | - | chr4_4:80600517-80600536 | Msa0707370:intron | 35.0% | |
| TATAATCAGGAAACTTGGAG+AGG | + | chr4_4:80600560-80600579 | None:intergenic | 35.0% | |
| AACTGCATCTATTTCAGCTT+GGG | + | chr4_4:80600788-80600807 | None:intergenic | 35.0% | |
| TGAGTGAGATGATTGATTGA+TGG | - | chr4_4:80600979-80600998 | Msa0707370:CDS | 35.0% | |
| GAGTGAGATGATTGATTGAT+GGG | - | chr4_4:80600980-80600999 | Msa0707370:CDS | 35.0% | |
| !! | TGTTTTAGGTCCCTATACAT+AGG | - | chr4_4:80601010-80601029 | Msa0707370:CDS | 35.0% |
| TGCTAACGGAAAAAAACGTT+GGG | + | chr4_4:80601084-80601103 | None:intergenic | 35.0% | |
| TTGCTAACGGAAAAAAACGT+TGG | + | chr4_4:80601085-80601104 | None:intergenic | 35.0% | |
| ATCAGCAACAATTAACAACG+AGG | + | chr4_4:80601115-80601134 | None:intergenic | 35.0% | |
| ! | ATTGTTGCTGATTGAGCAAA+CGG | - | chr4_4:80601123-80601142 | Msa0707370:exon | 35.0% |
| ! | ACTTTTGCTTGCTCAGATGT+TGG | - | chr4_4:80597616-80597635 | Msa0707370:three_prime_UTR | 40.0% |
| AGGTTAAAGTTCCCTTGGAT+CGG | - | chr4_4:80597653-80597672 | Msa0707370:three_prime_UTR | 40.0% | |
| ATGTTGACATGATTGCTGCA+AGG | - | chr4_4:80597711-80597730 | Msa0707370:three_prime_UTR | 40.0% | |
| AACACCTAGCTAACAGAATG+GGG | - | chr4_4:80597774-80597793 | Msa0707370:three_prime_UTR | 40.0% | |
| GTAATCAAGTCCAAGATTCC+AGG | - | chr4_4:80597951-80597970 | Msa0707370:CDS | 40.0% | |
| CTAATTAGAGACTGAATGCC+TGG | + | chr4_4:80597972-80597991 | None:intergenic | 40.0% | |
| ! | GACAAGGTAACCAATGGTTT+TGG | + | chr4_4:80598104-80598123 | None:intergenic | 40.0% |
| CACAAATGACAAAAGTCTGG+AGG | + | chr4_4:80598131-80598150 | None:intergenic | 40.0% | |
| GGGCAAGTTATATGCAATCA+TGG | - | chr4_4:80598306-80598325 | Msa0707370:CDS | 40.0% | |
| GTTTGACAAGCAGCTTTCAA+TGG | - | chr4_4:80598544-80598563 | Msa0707370:intron | 40.0% | |
| TCCACTCTAGTTACAATCAG+GGG | - | chr4_4:80598653-80598672 | Msa0707370:CDS | 40.0% | |
| !! | TTAGACAGGGTTGATGTTTG+AGG | + | chr4_4:80598850-80598869 | None:intergenic | 40.0% |
| CCTTTAATAGCGAATGAACC+TGG | + | chr4_4:80599020-80599039 | None:intergenic | 40.0% | |
| CCAGGTTCATTCGCTATTAA+AGG | - | chr4_4:80599017-80599036 | Msa0707370:intron | 40.0% | |
| TCATTCGCTATTAAAGGACC+TGG | - | chr4_4:80599023-80599042 | Msa0707370:intron | 40.0% | |
| ACATTGTCACTAGAATTCCC+CGG | + | chr4_4:80599172-80599191 | None:intergenic | 40.0% | |
| GTTGAAATGTGCAGAGCTTT+CGG | - | chr4_4:80599231-80599250 | Msa0707370:intron | 40.0% | |
| TTGAAATGTGCAGAGCTTTC+GGG | - | chr4_4:80599232-80599251 | Msa0707370:intron | 40.0% | |
| AGCAAATACAGAGGGATAGT+TGG | + | chr4_4:80599289-80599308 | None:intergenic | 40.0% | |
| !! | GGAACCTGGTTTTCATTTAC+TGG | - | chr4_4:80599833-80599852 | Msa0707370:intron | 40.0% |
| TGAAGCAATACCCTGGTTTA+CGG | - | chr4_4:80599897-80599916 | Msa0707370:intron | 40.0% | |
| AACACTACAACTGGTCGATA+TGG | - | chr4_4:80599982-80600001 | Msa0707370:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | + | chr4_4:80600193-80600212 | None:intergenic | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | + | chr4_4:80600194-80600213 | None:intergenic | 40.0% | |
| ! | GTTTTGCTTATAGTGAACGG+AGG | - | chr4_4:80600306-80600325 | Msa0707370:intron | 40.0% |
| TGTTTATTGTCAAGTACGGG+AGG | - | chr4_4:80600469-80600488 | Msa0707370:intron | 40.0% | |
| !!! | GATCACTTTTTCACTGAGCT+AGG | - | chr4_4:80600509-80600528 | Msa0707370:intron | 40.0% |
| ! | GGTCTGCAAAGAGTATATAC+AGG | + | chr4_4:80600677-80600696 | None:intergenic | 40.0% |
| TTTGTCCTCATTACTGAACG+AGG | - | chr4_4:80600702-80600721 | Msa0707370:intron | 40.0% | |
| CAACTGCATCTATTTCAGCT+TGG | + | chr4_4:80600789-80600808 | None:intergenic | 40.0% | |
| CTGAAATAGATGCAGTTGCT+TGG | - | chr4_4:80600791-80600810 | Msa0707370:CDS | 40.0% | |
| GCTAACGGAAAAAAACGTTG+GGG | + | chr4_4:80601083-80601102 | None:intergenic | 40.0% | |
| ! | ACGAGGACCTATTTTGCTAA+CGG | + | chr4_4:80601098-80601117 | None:intergenic | 40.0% |
| TTGCTTGCTCAGATGTTGGA+AGG | - | chr4_4:80597620-80597639 | Msa0707370:three_prime_UTR | 45.0% | |
| TGCTTGCTCAGATGTTGGAA+GGG | - | chr4_4:80597621-80597640 | Msa0707370:three_prime_UTR | 45.0% | |
| ! | TGTTGGAAGGGAGAGCATAT+AGG | - | chr4_4:80597633-80597652 | Msa0707370:three_prime_UTR | 45.0% |
| TGTTCACAACACCGATCCAA+GGG | + | chr4_4:80597667-80597686 | None:intergenic | 45.0% | |
| AGACTGAATGCCTGGAATCT+TGG | + | chr4_4:80597964-80597983 | None:intergenic | 45.0% | |
| GGGAAAGACAAGGTAACCAA+TGG | + | chr4_4:80598110-80598129 | None:intergenic | 45.0% | |
| AAAGTCTGGAGGGAAAGACA+AGG | + | chr4_4:80598120-80598139 | None:intergenic | 45.0% | |
| ! | ATAACTTGCCCTGCATGTGA+TGG | + | chr4_4:80598297-80598316 | None:intergenic | 45.0% |
| ACACATACACGCCATCAAGA+TGG | + | chr4_4:80598366-80598385 | None:intergenic | 45.0% | |
| CTGGAGCAATAAGATGAGGT+TGG | + | chr4_4:80598607-80598626 | None:intergenic | 45.0% | |
| !! | TGCTCTGGAGCAATAAGATG+AGG | + | chr4_4:80598611-80598630 | None:intergenic | 45.0% |
| CATCTTATTGCTCCAGAGCA+AGG | - | chr4_4:80598611-80598630 | Msa0707370:intron | 45.0% | |
| ! | GAGTGGATTCAATGAGACGA+CGG | + | chr4_4:80598640-80598659 | None:intergenic | 45.0% |
| !! | GAGAACTTATGTGGTAGTGG+TGG | - | chr4_4:80598759-80598778 | Msa0707370:CDS | 45.0% |
| ! | CACTAACAGCTTTGTGAACC+AGG | + | chr4_4:80599044-80599063 | None:intergenic | 45.0% |
| CAAAGCTGTTAGTGAGACTC+TGG | - | chr4_4:80599050-80599069 | Msa0707370:intron | 45.0% | |
| !! | TGAGACTCTGGTTTGTTCCT+GGG | - | chr4_4:80599062-80599081 | Msa0707370:intron | 45.0% |
| GAACAGATTTAGGCCCTGTT+TGG | + | chr4_4:80599619-80599638 | None:intergenic | 45.0% | |
| !!! | TGGGCATTGGCAATGACTTT+TGG | - | chr4_4:80599711-80599730 | Msa0707370:CDS | 45.0% |
| TTCTTGCAGTTCTTCTGCAC+AGG | - | chr4_4:80599761-80599780 | Msa0707370:intron | 45.0% | |
| ! | CAGGATTTGAAGCAATACCC+TGG | - | chr4_4:80599890-80599909 | Msa0707370:intron | 45.0% |
| GAAGCAATACCCTGGTTTAC+GGG | - | chr4_4:80599898-80599917 | Msa0707370:intron | 45.0% | |
| CAAAAGGGCAACACTACAAC+TGG | - | chr4_4:80599973-80599992 | Msa0707370:intron | 45.0% | |
| TATGGAGTCTGGCTATCTGA+CGG | - | chr4_4:80600000-80600019 | Msa0707370:intron | 45.0% | |
| CTTCCTCAAGATGTGGACAA+GGG | - | chr4_4:80600040-80600059 | Msa0707370:intron | 45.0% | |
| CAATCTCACTCTGCGTATTC+AGG | - | chr4_4:80600380-80600399 | Msa0707370:intron | 45.0% | |
| CACTGAGCTAGGAAAAATGG+AGG | - | chr4_4:80600520-80600539 | Msa0707370:intron | 45.0% | |
| CAGTAATGAGGACAAACGCT+TGG | + | chr4_4:80600698-80600717 | None:intergenic | 45.0% | |
| AGGATCCTCGTTCAGTAATG+AGG | + | chr4_4:80600710-80600729 | None:intergenic | 45.0% | |
| GAACGAGGATCCTGCAATTA+TGG | - | chr4_4:80600717-80600736 | Msa0707370:CDS | 45.0% | |
| CTACGACGTTCCATAATTGC+AGG | + | chr4_4:80600730-80600749 | None:intergenic | 45.0% | |
| GCAATTATGGAACGTCGTAG+TGG | - | chr4_4:80600730-80600749 | Msa0707370:CDS | 45.0% | |
| ACAACTCCAGTCTCTTTGCA+AGG | + | chr4_4:80600756-80600775 | None:intergenic | 45.0% | |
| CTATTTCAGCTTGGGCACTT+CGG | + | chr4_4:80600780-80600799 | None:intergenic | 45.0% | |
| TCTTCGGACTGCAAGTATCT+AGG | - | chr4_4:80600880-80600899 | Msa0707370:intron | 45.0% | |
| TGGAAACGCGCCTATGTATA+GGG | + | chr4_4:80601023-80601042 | None:intergenic | 45.0% | |
| TTGGAAACGCGCCTATGTAT+AGG | + | chr4_4:80601024-80601043 | None:intergenic | 45.0% | |
| !! | AATTTAATAATATTTAAGTA+GGG | + | chr4_4:80601054-80601073 | None:intergenic | 5.0% |
| !! | AAATTTAATAATATTTAAGT+AGG | + | chr4_4:80601055-80601074 | None:intergenic | 5.0% |
| !!! | CTTAAATATTATTAAATTTT+TGG | - | chr4_4:80601056-80601075 | Msa0707370:CDS | 5.0% |
| CTGTTCACAACACCGATCCA+AGG | + | chr4_4:80597668-80597687 | None:intergenic | 50.0% | |
| CAGACCCCATTCTGTTAGCT+AGG | + | chr4_4:80597781-80597800 | None:intergenic | 50.0% | |
| TCTGGCGAAGATGCTCTCAA+AGG | - | chr4_4:80597805-80597824 | Msa0707370:three_prime_UTR | 50.0% | |
| !! | TGAAACCGAACTGGCTCGTT+TGG | - | chr4_4:80598010-80598029 | Msa0707370:CDS | 50.0% |
| !! | GAAACCGAACTGGCTCGTTT+GGG | - | chr4_4:80598011-80598030 | Msa0707370:CDS | 50.0% |
| CTTTCCCAAACGAGCCAGTT+CGG | + | chr4_4:80598018-80598037 | None:intergenic | 50.0% | |
| ACTGCTTTGCCATCACATGC+AGG | - | chr4_4:80598285-80598304 | Msa0707370:CDS | 50.0% | |
| CTGCTTTGCCATCACATGCA+GGG | - | chr4_4:80598286-80598305 | Msa0707370:CDS | 50.0% | |
| TCAATTTCCTACAGGCGACC+TGG | - | chr4_4:80598461-80598480 | Msa0707370:intron | 50.0% | |
| ! | GCAACCTTTTCAGAGCAGCA+GGG | + | chr4_4:80598523-80598542 | None:intergenic | 50.0% |
| ! | TGCAACCTTTTCAGAGCAGC+AGG | + | chr4_4:80598524-80598543 | None:intergenic | 50.0% |
| GCCCCTGATTGTAACTAGAG+TGG | + | chr4_4:80598657-80598676 | None:intergenic | 50.0% | |
| !! | GTGAGACTCTGGTTTGTTCC+TGG | - | chr4_4:80599061-80599080 | Msa0707370:intron | 50.0% |
| ! | TGCTGGTGCTCTTATTTCGC+CGG | - | chr4_4:80599150-80599169 | Msa0707370:intron | 50.0% |
| ! | TGGCAATGACTTTTGGCCTC+TGG | - | chr4_4:80599718-80599737 | Msa0707370:CDS | 50.0% |
| GCAATGAAACAGCAGACCAG+AGG | + | chr4_4:80599737-80599756 | None:intergenic | 50.0% | |
| CAACTGGTCGATATGGAGTC+TGG | - | chr4_4:80599989-80600008 | Msa0707370:intron | 50.0% | |
| TCGGAAGCTTCCTCAAGATG+TGG | - | chr4_4:80600033-80600052 | Msa0707370:intron | 50.0% | |
| GCTTCCTCAAGATGTGGACA+AGG | - | chr4_4:80600039-80600058 | Msa0707370:intron | 50.0% | |
| ! | TAGTGGCCTTGCAAAGAGAC+TGG | - | chr4_4:80600747-80600766 | Msa0707370:CDS | 50.0% |
| CAGAATGGGGTCTGAGCATC+TGG | - | chr4_4:80597787-80597806 | Msa0707370:three_prime_UTR | 55.0% | |
| AAGCCTGTTGCAGCTGATGC+TGG | - | chr4_4:80598035-80598054 | Msa0707370:CDS | 55.0% | |
| AGCCTGTTGCAGCTGATGCT+GGG | - | chr4_4:80598036-80598055 | Msa0707370:CDS | 55.0% | |
| ATTTCCTACAGGCGACCTGG+AGG | - | chr4_4:80598464-80598483 | Msa0707370:intron | 55.0% | |
| ! | TTTTCAGAGCAGCAGGGAGC+TGG | + | chr4_4:80598517-80598536 | None:intergenic | 55.0% |
| !! | AGCTCCCTGCTGCTCTGAAA+AGG | - | chr4_4:80598516-80598535 | Msa0707370:intron | 55.0% |
| AGACGACGGTATCCTTGCTC+TGG | + | chr4_4:80598626-80598645 | None:intergenic | 55.0% | |
| TACCGCATCAACAGCTGCCT+CGG | + | chr4_4:80598684-80598703 | None:intergenic | 55.0% | |
| ! | GCTGGTGCTCTTATTTCGCC+GGG | - | chr4_4:80599151-80599170 | Msa0707370:intron | 55.0% |
| ! | CTGGTGCTCTTATTTCGCCG+GGG | - | chr4_4:80599152-80599171 | Msa0707370:intron | 55.0% |
| ! | ATACCCTGGTTTACGGGCTG+AGG | - | chr4_4:80599904-80599923 | Msa0707370:intron | 55.0% |
| CAACCTCAGCCCGTAAACCA+GGG | + | chr4_4:80599910-80599929 | None:intergenic | 55.0% | |
| ! | CTGGTTTACGGGCTGAGGTT+GGG | - | chr4_4:80599909-80599928 | Msa0707370:intron | 55.0% |
| ! | TGGTTTACGGGCTGAGGTTG+GGG | - | chr4_4:80599910-80599929 | Msa0707370:intron | 55.0% |
| CCACCCTTGTCCACATCTTG+AGG | + | chr4_4:80600046-80600065 | None:intergenic | 55.0% | |
| CCTCAAGATGTGGACAAGGG+TGG | - | chr4_4:80600043-80600062 | Msa0707370:intron | 55.0% | |
| GCCTGTTGCAGCTGATGCTG+GGG | - | chr4_4:80598037-80598056 | Msa0707370:CDS | 60.0% | |
| ACCCCAGCATCAGCTGCAAC+AGG | + | chr4_4:80598041-80598060 | None:intergenic | 60.0% | |
| ATCACCTCCAGGTCGCCTGT+AGG | + | chr4_4:80598471-80598490 | None:intergenic | 60.0% | |
| CATCAACAGCTGCCTCGGCA+GGG | + | chr4_4:80598679-80598698 | None:intergenic | 60.0% | |
| TGCCGAGGCAGCTGTTGATG+CGG | - | chr4_4:80598679-80598698 | Msa0707370:CDS | 60.0% | |
| CCAACCTCAGCCCGTAAACC+AGG | + | chr4_4:80599911-80599930 | None:intergenic | 60.0% | |
| ! | CCTGGTTTACGGGCTGAGGT+TGG | - | chr4_4:80599908-80599927 | Msa0707370:intron | 60.0% |
| TACAATCAGGGGCCCTGCCG+AGG | - | chr4_4:80598664-80598683 | Msa0707370:CDS | 65.0% | |
| GCATCAACAGCTGCCTCGGC+AGG | + | chr4_4:80598680-80598699 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 80597615 | 80601158 | 80597615 | ID=Msa0707370;Name=Msa0707370 |
| chr4_4 | mRNA | 80597615 | 80601158 | 80597615 | ID=Msa0707370-mRNA-1;Parent=Msa0707370;Name=Msa0707370-mRNA-1;_AED=0.07;_eAED=0.07;_QI=17|1|1|1|1|1|8|336|386 |
| chr4_4 | exon | 80597615 | 80598079 | 80597615 | ID=Msa0707370-mRNA-1:exon:26295;Parent=Msa0707370-mRNA-1 |
| chr4_4 | exon | 80598232 | 80598371 | 80598232 | ID=Msa0707370-mRNA-1:exon:26294;Parent=Msa0707370-mRNA-1 |
| chr4_4 | exon | 80598652 | 80598880 | 80598652 | ID=Msa0707370-mRNA-1:exon:26293;Parent=Msa0707370-mRNA-1 |
| chr4_4 | exon | 80599702 | 80599752 | 80599702 | ID=Msa0707370-mRNA-1:exon:26292;Parent=Msa0707370-mRNA-1 |
| chr4_4 | exon | 80600073 | 80600298 | 80600073 | ID=Msa0707370-mRNA-1:exon:26291;Parent=Msa0707370-mRNA-1 |
| chr4_4 | exon | 80600396 | 80600466 | 80600396 | ID=Msa0707370-mRNA-1:exon:26290;Parent=Msa0707370-mRNA-1 |
| chr4_4 | exon | 80600715 | 80600834 | 80600715 | ID=Msa0707370-mRNA-1:exon:26289;Parent=Msa0707370-mRNA-1 |
| chr4_4 | exon | 80600947 | 80601158 | 80600947 | ID=Msa0707370-mRNA-1:exon:26288;Parent=Msa0707370-mRNA-1 |
| chr4_4 | five_prime_UTR | 80601142 | 80601158 | 80601142 | ID=Msa0707370-mRNA-1:five_prime_utr;Parent=Msa0707370-mRNA-1 |
| chr4_4 | CDS | 80600947 | 80601141 | 80600947 | ID=Msa0707370-mRNA-1:cds;Parent=Msa0707370-mRNA-1 |
| chr4_4 | CDS | 80600715 | 80600834 | 80600715 | ID=Msa0707370-mRNA-1:cds;Parent=Msa0707370-mRNA-1 |
| chr4_4 | CDS | 80600396 | 80600466 | 80600396 | ID=Msa0707370-mRNA-1:cds;Parent=Msa0707370-mRNA-1 |
| chr4_4 | CDS | 80600073 | 80600298 | 80600073 | ID=Msa0707370-mRNA-1:cds;Parent=Msa0707370-mRNA-1 |
| chr4_4 | CDS | 80599702 | 80599752 | 80599702 | ID=Msa0707370-mRNA-1:cds;Parent=Msa0707370-mRNA-1 |
| chr4_4 | CDS | 80598652 | 80598880 | 80598652 | ID=Msa0707370-mRNA-1:cds;Parent=Msa0707370-mRNA-1 |
| chr4_4 | CDS | 80598232 | 80598371 | 80598232 | ID=Msa0707370-mRNA-1:cds;Parent=Msa0707370-mRNA-1 |
| chr4_4 | CDS | 80597951 | 80598079 | 80597951 | ID=Msa0707370-mRNA-1:cds;Parent=Msa0707370-mRNA-1 |
| chr4_4 | three_prime_UTR | 80597615 | 80597950 | 80597615 | ID=Msa0707370-mRNA-1:three_prime_utr;Parent=Msa0707370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
