AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1129880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1129880 MtrunA17_Chr7g0274821 93.188 367 18 3 1 360 1 367 0.0 682
Msa1129880 MtrunA17_Chr1g0190011 55.874 349 123 9 13 355 5 328 1.20e-118 346
Msa1129880 MtrunA17_Chr5g0397551 38.824 255 121 11 73 298 69 317 3.67e-38 139
Msa1129880 MtrunA17_Chr1g0179461 43.147 197 88 5 74 249 69 262 6.06e-38 139
Msa1129880 MtrunA17_Chr7g0245841 48.168 191 89 6 74 255 60 249 7.28e-36 133
Msa1129880 MtrunA17_Chr8g0386741 38.095 231 110 9 71 276 94 316 5.24e-35 131
Msa1129880 MtrunA17_Chr8g0349091 45.545 202 99 4 62 254 77 276 8.58e-35 130
Msa1129880 MtrunA17_Chr4g0054661 39.344 244 120 8 28 251 24 259 2.72e-34 129
Msa1129880 MtrunA17_Chr8g0351761 34.304 309 161 10 60 339 56 351 7.71e-33 125
Msa1129880 MtrunA17_Chr7g0247431 41.546 207 106 4 71 262 86 292 7.89e-33 125
Msa1129880 MtrunA17_Chr4g0056761 43.269 208 104 5 60 253 58 265 3.72e-32 123
Msa1129880 MtrunA17_Chr1g0188211 41.667 228 97 7 49 249 31 249 6.58e-32 122
Msa1129880 MtrunA17_Chr5g0398621 38.503 187 97 3 70 249 42 217 1.07e-31 119
Msa1129880 MtrunA17_Chr6g0476061 49.167 120 58 1 133 249 127 246 1.24e-28 113
Msa1129880 MtrunA17_Chr1g0168121 44.248 113 63 0 136 248 69 181 3.48e-22 94.7
Msa1129880 MtrunA17_Chr4g0027371 45.600 125 58 3 132 248 15 137 4.82e-22 93.6
Msa1129880 MtrunA17_Chr4g0027351 43.697 119 64 3 128 243 10 128 1.13e-20 87.0
Msa1129880 MtrunA17_Chr1g0190051 46.903 113 60 0 136 248 101 213 4.12e-20 89.4
Msa1129880 MtrunA17_Chr3g0112131 40.351 114 68 0 135 248 105 218 8.66e-20 88.6
Msa1129880 MtrunA17_Chr4g0027331 42.373 118 62 3 131 242 14 131 2.84e-19 83.2
Msa1129880 MtrunA17_Chr1g0165101 33.333 246 126 10 40 261 60 291 3.78e-19 87.4
Msa1129880 MtrunA17_Chr6g0476241 32.692 208 99 6 58 248 104 287 4.40e-18 83.6
Msa1129880 MtrunA17_Chr8g0351651 37.288 118 74 0 131 248 108 225 6.98e-18 83.2
Msa1129880 MtrunA17_Chr3g0133051 35.043 117 72 2 136 248 101 217 2.01e-17 81.6
Msa1129880 MtrunA17_Chr5g0398531 37.288 118 74 0 131 248 122 239 2.65e-17 81.6
Msa1129880 MtrunA17_Chr5g0443311 28.033 239 124 5 11 249 1 191 7.14e-17 79.3
Msa1129880 MtrunA17_Chr7g0250031 39.823 113 68 0 136 248 84 196 1.22e-16 79.0
Msa1129880 MtrunA17_Chr4g0054651 39.823 113 68 0 136 248 103 215 1.46e-16 79.3
Msa1129880 MtrunA17_Chr5g0417581 33.529 170 86 5 133 278 16 182 3.37e-16 76.3
Msa1129880 MtrunA17_Chr4g0027301 38.655 119 63 3 133 243 23 139 6.08e-14 68.6
Msa1129880 MtrunA17_Chr3g0086021 34.328 134 79 3 148 275 118 248 6.36e-14 71.6
Msa1129880 MtrunA17_Chr5g0427311 24.167 240 127 5 16 248 4 195 1.09e-13 70.1
Msa1129880 MtrunA17_Chr5g0435681 33.913 115 76 0 134 248 114 228 1.60e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1129880 AT3G04590.2 50.409 367 143 12 30 360 48 411 4.39e-90 276
Msa1129880 AT3G04590.1 55.598 259 96 6 30 269 48 306 2.91e-74 233
Msa1129880 AT5G28590.1 46.256 227 81 7 126 342 20 215 7.64e-48 161
Msa1129880 AT4G12080.1 38.132 257 129 7 74 304 89 341 8.24e-44 155
Msa1129880 AT4G25320.1 44.601 213 97 6 58 249 70 282 2.32e-43 155
Msa1129880 AT2G33620.1 44.560 193 98 4 71 255 94 285 3.13e-43 153
Msa1129880 AT2G33620.4 44.560 193 98 4 71 255 94 285 3.13e-43 153
Msa1129880 AT2G33620.2 44.560 193 98 4 71 255 94 285 3.13e-43 153
Msa1129880 AT2G33620.3 44.560 193 98 4 71 255 94 285 3.13e-43 153
Msa1129880 AT2G45850.1 45.361 194 95 3 72 257 96 286 2.59e-41 148
Msa1129880 AT2G45850.2 45.361 194 95 3 72 257 96 286 2.59e-41 148
Msa1129880 AT2G45850.3 37.698 252 139 5 12 248 29 277 1.94e-38 139
Msa1129880 AT5G62260.1 38.393 224 101 5 63 255 65 282 8.24e-38 140
Msa1129880 AT5G62260.3 38.393 224 101 5 63 255 65 282 8.24e-38 140
Msa1129880 AT1G63480.5 43.750 192 93 6 73 256 92 276 4.35e-36 134
Msa1129880 AT1G63480.7 43.750 192 93 6 73 256 92 276 4.35e-36 134
Msa1129880 AT1G63480.4 43.750 192 93 6 73 256 92 276 4.35e-36 134
Msa1129880 AT1G63480.3 43.750 192 93 6 73 256 92 276 4.35e-36 134
Msa1129880 AT1G63480.6 43.750 192 93 6 73 256 92 276 4.35e-36 134
Msa1129880 AT1G63480.2 43.750 192 93 6 73 256 98 282 4.74e-36 134
Msa1129880 AT1G63480.1 43.750 192 93 6 73 256 98 282 4.74e-36 134
Msa1129880 AT5G62260.2 39.623 212 91 5 63 243 65 270 1.06e-35 132
Msa1129880 AT5G51590.1 55.556 117 49 1 136 249 178 294 2.04e-35 134
Msa1129880 AT4G22770.2 41.624 197 96 4 72 249 70 266 3.82e-35 131
Msa1129880 AT4G22770.1 41.624 197 96 4 72 249 70 266 3.82e-35 131
Msa1129880 AT4G17950.1 37.295 244 114 7 73 282 130 368 2.94e-34 131
Msa1129880 AT5G46640.1 41.631 233 107 6 73 282 101 327 1.20e-33 129
Msa1129880 AT3G61310.1 45.161 186 88 5 73 249 100 280 5.62e-33 126
Msa1129880 AT1G63470.1 40.000 190 100 4 73 249 104 292 6.38e-32 124
Msa1129880 AT4G00200.2 41.000 200 90 5 74 255 56 245 3.48e-30 117
Msa1129880 AT4G00200.1 41.000 200 90 5 74 255 56 245 3.48e-30 117
Msa1129880 AT3G60870.1 32.090 134 89 1 115 248 65 196 2.17e-19 87.0
Msa1129880 AT5G49700.1 35.833 120 70 2 136 248 83 202 9.85e-18 82.8
Msa1129880 AT1G76500.1 36.885 122 68 1 136 248 99 220 2.22e-17 82.0
Msa1129880 AT4G14465.1 40.708 113 67 0 136 248 94 206 4.71e-17 80.9
Msa1129880 AT3G04570.1 37.705 122 68 1 135 248 106 227 1.16e-15 77.4
Msa1129880 AT3G55560.1 38.596 114 69 1 136 248 115 228 2.94e-15 75.9
Msa1129880 AT2G45430.1 35.246 122 75 1 131 248 111 232 8.32e-15 74.7
Msa1129880 AT1G14490.2 31.667 120 75 2 136 248 49 168 9.49e-15 73.2
Msa1129880 AT4G12050.1 33.333 135 89 1 115 248 124 258 1.48e-14 74.3
Msa1129880 AT1G14490.1 31.933 119 74 2 137 248 31 149 1.69e-14 72.0
Msa1129880 AT4G22810.1 34.711 121 76 1 131 248 127 247 1.69e-14 73.9
Msa1129880 AT2G36560.1 30.070 143 94 4 112 249 82 223 9.45e-14 72.8
Msa1129880 AT4G17800.1 36.283 113 72 0 136 248 109 221 1.13e-13 71.2
Msa1129880 AT2G42940.1 35.965 114 73 0 136 249 80 193 2.58e-13 69.7
Msa1129880 AT2G35270.1 35.398 113 73 0 136 248 105 217 2.80e-13 70.1
Msa1129880 AT4G35390.1 37.391 115 70 1 136 248 90 204 3.12e-13 70.1

Find 148 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGATATCATTTCGCTTAC+TGG 0.137983 7_3:-81893640 Msa1129880:CDS
GAACTGGACCAGCAGCTTTA+AGG 0.151788 7_3:+81893518 None:intergenic
TGCAATTTATGCAACAAAAT+AGG 0.176992 7_3:-81894608 Msa1129880:CDS
GCAATTTATGCAACAAAATA+GGG 0.199709 7_3:-81894607 Msa1129880:CDS
CAAATTCTCAATCAGGAATT+TGG 0.241504 7_3:+81892639 None:intergenic
CGGATGGCGCATACTATAAA+TGG 0.259174 7_3:+81892530 None:intergenic
CTCCGTCAACCAGCATCTTC+AGG 0.315212 7_3:-81894537 Msa1129880:CDS
GGTGGAAGAAAGAGCTTAAT+TGG 0.350801 7_3:+81896430 None:intergenic
TTAGCAGCTAGGGCTTGTTC+AGG 0.361515 7_3:+81896192 None:intergenic
GAGAGAATGAGATTTCTTAG+AGG 0.362002 7_3:+81896089 None:intergenic
AGAGCTTAATTGGTTGTCAT+TGG 0.370721 7_3:+81896440 None:intergenic
TACCTATACCATGATAAATA+AGG 0.371169 7_3:-81892361 Msa1129880:three_prime_UTR
TATATTTCCCTTCCGTTTCA+AGG 0.373603 7_3:-81892294 Msa1129880:three_prime_UTR
GTTGCTGGTGTTGTTGTTGT+TGG 0.374911 7_3:+81896397 None:intergenic
TGCTTCCTAGCTTAGTTTGT+GGG 0.376035 7_3:-81892318 Msa1129880:three_prime_UTR
AGAGGTAGACCTAGAAAATA+TGG 0.378143 7_3:-81896219 Msa1129880:CDS
CTCAATATTGCAGGAAGAAC+AGG 0.378174 7_3:-81892701 Msa1129880:intron
AACTGGACCAGCAGCTTTAA+GGG 0.379611 7_3:+81893519 None:intergenic
TACCTTATTTATCATGGTAT+AGG 0.382820 7_3:+81892359 None:intergenic
CCTTCTAAGATTACCTGAAC+TGG 0.384145 7_3:+81893502 None:intergenic
TAACCAGCATGTCTTGAATC+TGG 0.387032 7_3:+81892810 None:intergenic
CGCTGGAAGAGTCGACTGTT+TGG 0.391063 7_3:+81892946 None:intergenic
CTACCTCTCTTCCTCTTAGC+TGG 0.391774 7_3:+81896234 None:intergenic
GGCGAGCCAGCATCAAGTTT+AGG 0.392871 7_3:-81892975 Msa1129880:CDS
GGTGGTGGTGGTTGTGGATA+CGG 0.400323 7_3:+81896356 None:intergenic
TAAAGCTGCTGGTCCAGTTC+AGG 0.403368 7_3:-81893515 Msa1129880:intron
TGTTCATCATTTCCTCGGAT+TGG 0.407349 7_3:+81892918 None:intergenic
GCCATCTCAAATTCTCAATC+AGG 0.415987 7_3:+81892632 None:intergenic
GACACTAGTGCTGGTGGAAA+AGG 0.420179 7_3:-81893032 Msa1129880:CDS
CATGTCATTGCTGTTGCTGC+TGG 0.421863 7_3:-81895831 Msa1129880:CDS
CTTGATGCTGGCTCGCCAAC+TGG 0.422763 7_3:+81892981 None:intergenic
TTCGCCCTCCGGTTTCATTA+CGG 0.428138 7_3:+81893608 None:intergenic
GTTGTTGGTGGTTGTGGTGG+TGG 0.428283 7_3:+81896412 None:intergenic
GTTGTTGTTGTTGGTGGTTG+TGG 0.436641 7_3:+81896406 None:intergenic
GGTGGGCCCCTTAAAGCTGC+TGG 0.437762 7_3:-81893526 Msa1129880:CDS
TCCTATGTCCGTAATGAAAC+CGG 0.439359 7_3:-81893616 Msa1129880:CDS
CAAGTTGTTGAATCATGTAA+TGG 0.441011 7_3:+81892877 None:intergenic
GGTGGTTGTGGATACGGTGG+TGG 0.443069 7_3:+81896362 None:intergenic
TATACCTACCTTATTTATCA+TGG 0.447415 7_3:+81892353 None:intergenic
GTCAGAAGCCACGACCTTAA+CGG 0.450596 7_3:+81892510 None:intergenic
TGGGGTGATGCAGGCAATGC+AGG 0.457106 7_3:-81895870 Msa1129880:intron
ATGTGGGACCCATCCGTGTT+TGG 0.457507 7_3:+81896306 None:intergenic
ATGCTTCCTAGCTTAGTTTG+TGG 0.457545 7_3:-81892319 Msa1129880:three_prime_UTR
GCTGGTGTTGTTGTTGTTGG+TGG 0.458412 7_3:+81896400 None:intergenic
ATAGTATGCGCCATCCGTTA+AGG 0.460483 7_3:-81892524 Msa1129880:three_prime_UTR
AATTCTGATGGACAAATCAT+AGG 0.463502 7_3:-81893559 Msa1129880:CDS
TGGTCATAGCCTCCATTCTC+GGG 0.466277 7_3:+81892659 None:intergenic
GGTTCGATGGCACCAATGTC+TGG 0.467018 7_3:-81892604 Msa1129880:three_prime_UTR
GAGAATTTGAGATGGCTTGT+GGG 0.469001 7_3:-81892625 Msa1129880:three_prime_UTR
TCTCACCAGTCTCCCGAGAA+TGG 0.469905 7_3:-81892671 Msa1129880:CDS
AGCCTCCATTCTCGGGAGAC+TGG 0.470077 7_3:+81892666 None:intergenic
CGGAGATGCGGTGGTGGTGG+TGG 0.470099 7_3:+81896344 None:intergenic
ATCATAGGTGGTGGTGTTGG+TGG 0.470575 7_3:-81893544 Msa1129880:CDS
TGTAAGAAGTGTAGCTTGGA+TGG 0.471489 7_3:+81896605 None:intergenic
TATGCATTCAATAGGATGTT+GGG 0.475179 7_3:-81894641 Msa1129880:intron
TTGGTCATAGCCTCCATTCT+CGG 0.475797 7_3:+81892658 None:intergenic
TGACTTGATTTGTGCTGCCA+CGG 0.478635 7_3:+81896475 None:intergenic
GCAGAAGAAGCCACTGAATG+AGG 0.479604 7_3:+81896276 None:intergenic
CATTACATGATTCAACAACT+TGG 0.485575 7_3:-81892876 Msa1129880:CDS
ATTCTTGTTGTTATCAAGAG+TGG 0.485874 7_3:+81896143 None:intergenic
GATTTCTTAGAGGTGAAAGA+AGG 0.487496 7_3:+81896099 None:intergenic
CTTGATGTTCATCATTTCCT+CGG 0.490079 7_3:+81892913 None:intergenic
CGTCGGAGATGCGGTGGTGG+TGG 0.495646 7_3:+81896341 None:intergenic
AAATCTCATTCTCTCTCTCT+AGG 0.496213 7_3:-81896081 Msa1129880:intron
CTCCTGAAGATGCTGGTTGA+CGG 0.496465 7_3:+81894535 None:intergenic
ATATGCATTATGTCTGCATC+TGG 0.497917 7_3:-81894579 Msa1129880:CDS
GCTGGCTCGCCAACTGGTGA+TGG 0.498545 7_3:+81892987 None:intergenic
AAGACCACCACTTCGCCCTC+CGG 0.498681 7_3:+81893597 None:intergenic
ACCTCCCAGGTCTACAGAGT+GGG 0.499164 7_3:-81892841 Msa1129880:CDS
AAATGATGAACATCAAGCTA+TGG 0.500826 7_3:-81892907 Msa1129880:CDS
CTCAGCTTGAACCAGCTAAG+AGG 0.502476 7_3:-81896245 Msa1129880:CDS
CTGAATGAGGGTAAAGTATG+TGG 0.508435 7_3:+81896289 None:intergenic
TTCTTGTTGTTATCAAGAGT+GGG 0.509082 7_3:+81896144 None:intergenic
TGCGCCATCCGTTAAGGTCG+TGG 0.515945 7_3:-81892518 Msa1129880:three_prime_UTR
AGGAGGCAACATTATGTATG+AGG 0.516281 7_3:-81894517 Msa1129880:intron
AAATACATCACAAGTAAATG+AGG 0.517819 7_3:+81892441 None:intergenic
ATCTTGTAAGAAGTGTAGCT+TGG 0.519210 7_3:+81896601 None:intergenic
TATAGCCCACAAACTAAGCT+AGG 0.521819 7_3:+81892313 None:intergenic
GTTGTTGTTGGTGGTTGTGG+TGG 0.524710 7_3:+81896409 None:intergenic
GTTTGCACGTGACACCTCCC+AGG 0.535717 7_3:-81892854 Msa1129880:CDS
TCCGGTTTCATTACGGACAT+AGG 0.536430 7_3:+81893615 None:intergenic
GTATGCATTCAATAGGATGT+TGG 0.536594 7_3:-81894642 Msa1129880:intron
CACTGGACTTCATACCTGAC+AGG 0.545872 7_3:+81892784 None:intergenic
TCATAGGTGGTGGTGTTGGT+GGG 0.546536 7_3:-81893543 Msa1129880:CDS
CATCCAGATTCAAGACATGC+TGG 0.548607 7_3:-81892813 Msa1129880:CDS
CAAATCATAGGTGGTGGTGT+TGG 0.550092 7_3:-81893547 Msa1129880:CDS
ATGGAGCAAGCACCTTGAAA+CGG 0.550654 7_3:+81892282 None:intergenic
GTTCGTCGGAGATGCGGTGG+TGG 0.551568 7_3:+81896338 None:intergenic
TTAGAGGTGAAAGAAGGAGA+AGG 0.553443 7_3:+81896105 None:intergenic
CATACTTTACCCTCATTCAG+TGG 0.553520 7_3:-81896286 Msa1129880:CDS
ACCGTTCGTCGGAGATGCGG+TGG 0.555343 7_3:+81896335 None:intergenic
CATGCTGGTTATGACCTGTC+AGG 0.555450 7_3:-81892798 Msa1129880:intron
CATTGCTGTTGCTGCTGGTG+AGG 0.555993 7_3:-81895826 Msa1129880:intron
AGCAAGCACCTTGAAACGGA+AGG 0.556073 7_3:+81892286 None:intergenic
GTATGCTTGTCTAATTCTGA+TGG 0.561947 7_3:-81893571 Msa1129880:CDS
TGAGAATTTGAGATGGCTTG+TGG 0.563343 7_3:-81892626 Msa1129880:three_prime_UTR
GTAAGAAGTGTAGCTTGGAT+GGG 0.563774 7_3:+81896606 None:intergenic
TCCTCGGATTGGATTCCCGC+TGG 0.565035 7_3:+81892929 None:intergenic
ATTGCAGGAAGAACAGGTCA+TGG 0.575958 7_3:-81892695 Msa1129880:intron
ACGGAGAGAGGCATTAGAGA+TGG 0.577094 7_3:+81894554 None:intergenic
CACCTCGTGACAAAGACTGC+TGG 0.581481 7_3:+81892553 None:intergenic
AATGATGAACATCAAGCTAT+GGG 0.582749 7_3:-81892906 Msa1129880:CDS
GGAAAAGGTGATCCCTCTGC+TGG 0.584167 7_3:-81893017 Msa1129880:CDS
TCCTGATTGAGAATTTGAGA+TGG 0.587653 7_3:-81892633 Msa1129880:exon
AACAAGAAGGACACTAGTGC+TGG 0.587899 7_3:-81893041 Msa1129880:CDS
TGGAAGAGTCGACTGTTTGG+TGG 0.588873 7_3:+81892949 None:intergenic
GAGATGGCTTGTGGGTTCGA+TGG 0.589349 7_3:-81892617 Msa1129880:three_prime_UTR
GGTGGTGGTTGTGGATACGG+TGG 0.589521 7_3:+81896359 None:intergenic
TAATCCCTACAGGTCATTGT+CGG 0.592613 7_3:-81893080 Msa1129880:intron
GAACCAGCTAAGAGGAAGAG+AGG 0.597787 7_3:-81896237 Msa1129880:CDS
TGGAAACCTAAACTTGATGC+TGG 0.602657 7_3:+81892969 None:intergenic
GAAACCGGAGGGCGAAGTGG+TGG 0.603275 7_3:-81893601 Msa1129880:CDS
CAATTTATGCAACAAAATAG+GGG 0.604932 7_3:-81894606 Msa1129880:CDS
AAGAAGGACACTAGTGCTGG+TGG 0.607696 7_3:-81893038 Msa1129880:CDS
CAGAAGAAGCCACTGAATGA+GGG 0.609592 7_3:+81896277 None:intergenic
AGATGCTGGTTGACGGAGAG+AGG 0.610130 7_3:+81894542 None:intergenic
TTTGGTAAAAGACCGTTCGT+CGG 0.610276 7_3:+81896324 None:intergenic
GATGCAGGCAATGCAGGACA+AGG 0.611195 7_3:-81895864 Msa1129880:intron
AAGACCGTTCGTCGGAGATG+CGG 0.611771 7_3:+81896332 None:intergenic
TACAACTGTTAACCAGACAT+TGG 0.620305 7_3:+81892592 None:intergenic
TTGCAGGAAGAACAGGTCAT+GGG 0.620825 7_3:-81892694 Msa1129880:intron
CAAAGACTGCTGGTATGTAG+TGG 0.621373 7_3:+81892563 None:intergenic
AATGAAACCGGAGGGCGAAG+TGG 0.622641 7_3:-81893604 Msa1129880:CDS
AAACAGTCGACTCTTCCAGC+GGG 0.624900 7_3:-81892944 Msa1129880:CDS
GATGAACATCAAGCTATGGG+TGG 0.627293 7_3:-81892903 Msa1129880:CDS
CACCTCCCAGGTCTACAGAG+TGG 0.633953 7_3:-81892842 Msa1129880:CDS
GCAAGCACCTTGAAACGGAA+GGG 0.638256 7_3:+81892287 None:intergenic
ATGTTGCCTCCTGAAGATGC+TGG 0.639283 7_3:+81894528 None:intergenic
TGAATGAGGGTAAAGTATGT+GGG 0.641240 7_3:+81896290 None:intergenic
TGATGGCAACTTACCAGCAG+AGG 0.643200 7_3:+81893004 None:intergenic
GGTAAGTTGCCATCACCAGT+TGG 0.643376 7_3:-81892996 Msa1129880:CDS
ACTGGACCAGCAGCTTTAAG+GGG 0.646372 7_3:+81893520 None:intergenic
GATGGCAACTTACCAGCAGA+GGG 0.646608 7_3:+81893005 None:intergenic
TATACCATGATAAATAAGGT+AGG 0.647891 7_3:-81892357 Msa1129880:three_prime_UTR
CACCAGTCTCCCGAGAATGG+AGG 0.648200 7_3:-81892668 Msa1129880:CDS
ACCACCGCATCTCCGACGAA+CGG 0.651866 7_3:-81896336 Msa1129880:CDS
CCTCCCAGGTCTACAGAGTG+GGG 0.652955 7_3:-81892840 Msa1129880:CDS
GAAGCCACGACCTTAACGGA+TGG 0.655831 7_3:+81892514 None:intergenic
TCTGATGGACAAATCATAGG+TGG 0.664275 7_3:-81893556 Msa1129880:CDS
TCCAGCGGGAATCCAATCCG+AGG 0.670950 7_3:-81892930 Msa1129880:CDS
GATGGACAAATCATAGGTGG+TGG 0.676431 7_3:-81893553 Msa1129880:CDS
ATGTCCGTAATGAAACCGGA+GGG 0.676572 7_3:-81893612 Msa1129880:CDS
CGTCAACCAGCATCTTCAGG+AGG 0.676685 7_3:-81894534 Msa1129880:CDS
TATGTCCGTAATGAAACCGG+AGG 0.677990 7_3:-81893613 Msa1129880:CDS
CTCCCAGGTCTACAGAGTGG+GGG 0.684142 7_3:-81892839 Msa1129880:CDS
CAAACAGTCGACTCTTCCAG+CGG 0.690163 7_3:-81892945 Msa1129880:CDS
TACCAGCAGTCTTTGTCACG+AGG 0.704449 7_3:-81892555 Msa1129880:three_prime_UTR
CCCCACTCTGTAGACCTGGG+AGG 0.709027 7_3:+81892840 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAATAATCTTAAACAAAA+TGG + chr7_3:81893236-81893255 None:intergenic 10.0%
!! TTATTATTTATTATAAAAGG+AGG - chr7_3:81893418-81893437 Msa1129880:intron 10.0%
!! AAATTCAAAGTAATATAAAT+AGG + chr7_3:81894567-81894586 None:intergenic 10.0%
!! AAGAGAAAAATAAAAAAATA+TGG + chr7_3:81894808-81894827 None:intergenic 10.0%
!! TGTTATAAATATAGATATTT+CGG - chr7_3:81895686-81895705 Msa1129880:intron 10.0%
!!! TTATTGATTATCATAATTCA+AGG - chr7_3:81892950-81892969 Msa1129880:CDS 15.0%
!!! CTTAATTTTATTTAGTTTGA+TGG - chr7_3:81892989-81893008 Msa1129880:CDS 15.0%
!!! TTTTAACAAACTTAAACAAA+CGG - chr7_3:81893577-81893596 Msa1129880:CDS 15.0%
!! AAAAATAAAAAAATATGGAC+GGG + chr7_3:81894803-81894822 None:intergenic 15.0%
!! GAAAAATAAAAAAATATGGA+CGG + chr7_3:81894804-81894823 None:intergenic 15.0%
!!! GTTGATCTTTTTAATTTTTT+AGG - chr7_3:81895155-81895174 Msa1129880:intron 15.0%
!! ATTTATCAAAAATAACTTCT+TGG + chr7_3:81895788-81895807 None:intergenic 15.0%
!! GATGTATTTAAAAATTAGAA+TGG - chr7_3:81896464-81896483 Msa1129880:exon 15.0%
!!! TTTATTTAGTTTGATGGTTA+TGG - chr7_3:81892995-81893014 Msa1129880:CDS 20.0%
!! TTTAACAAACTTAAACAAAC+GGG - chr7_3:81893578-81893597 Msa1129880:CDS 20.0%
!! TTGGAGAAATAATCAATTAT+TGG - chr7_3:81893670-81893689 Msa1129880:intron 20.0%
!!! TTTTTAAGATGCTAATTTCT+TGG - chr7_3:81893843-81893862 Msa1129880:intron 20.0%
!! TAAAATGTAAAGATAAACCT+TGG + chr7_3:81894663-81894682 None:intergenic 20.0%
!! AAAATAAAAAAATATGGACG+GGG + chr7_3:81894802-81894821 None:intergenic 20.0%
!! GAAATATTCTTATAAGAAGT+GGG + chr7_3:81894988-81895007 None:intergenic 20.0%
!! AGAAATATTCTTATAAGAAG+TGG + chr7_3:81894989-81895008 None:intergenic 20.0%
!! AAATTGTGTCTATATTAGAT+TGG - chr7_3:81895044-81895063 Msa1129880:intron 20.0%
!!! AATTTTTTAGGTGTATGATT+TGG - chr7_3:81895167-81895186 Msa1129880:intron 20.0%
!! TATTTAAAAATTAGAATGGC+TGG - chr7_3:81896468-81896487 Msa1129880:exon 20.0%
! CACAAATCAAGTCAAAAAAA+TGG - chr7_3:81892425-81892444 Msa1129880:three_prime_UTR 25.0%
! TGATTCTTTCTCTAATTTCT+AGG - chr7_3:81892835-81892854 Msa1129880:CDS 25.0%
! GATTCTTTCTCTAATTTCTA+GGG - chr7_3:81892836-81892855 Msa1129880:CDS 25.0%
! CTCTTAATCATGAATTGATT+TGG - chr7_3:81892876-81892895 Msa1129880:CDS 25.0%
! ATTGCTCAAGTTAATGTATT+TGG - chr7_3:81893203-81893222 Msa1129880:intron 25.0%
! TTGCTCAAGTTAATGTATTT+GGG - chr7_3:81893204-81893223 Msa1129880:intron 25.0%
!! AAGTTAATGTATTTGGGTTT+GGG - chr7_3:81893210-81893229 Msa1129880:intron 25.0%
!!! AAAGCTATTTTGATTAGCTT+TGG + chr7_3:81893472-81893491 None:intergenic 25.0%
! ATTTCTCCAAATCTAATCAA+GGG + chr7_3:81893660-81893679 None:intergenic 25.0%
! TATTTCTCCAAATCTAATCA+AGG + chr7_3:81893661-81893680 None:intergenic 25.0%
!! AGACAATAGCATTTTTCATA+TGG - chr7_3:81893811-81893830 Msa1129880:intron 25.0%
!! ATCCAAGAATAATGCTTTTA+GGG - chr7_3:81893922-81893941 Msa1129880:intron 25.0%
! TTTAAGCAAAATATGCTTGT+AGG - chr7_3:81894039-81894058 Msa1129880:intron 25.0%
! ATTAAGATCCTAAAACATCT+TGG + chr7_3:81894110-81894129 None:intergenic 25.0%
! TGAAAACCAAATTGGATAAA+TGG + chr7_3:81894193-81894212 None:intergenic 25.0%
! GAAAAAGATGAAAACCAAAT+TGG + chr7_3:81894201-81894220 None:intergenic 25.0%
! TATTTGAGTATGCATTCAAT+AGG - chr7_3:81894242-81894261 Msa1129880:intron 25.0%
! TGCAATTTATGCAACAAAAT+AGG - chr7_3:81894283-81894302 Msa1129880:intron 25.0%
! GCAATTTATGCAACAAAATA+GGG - chr7_3:81894284-81894303 Msa1129880:intron 25.0%
! CAATTTATGCAACAAAATAG+GGG - chr7_3:81894285-81894304 Msa1129880:intron 25.0%
! TGAAGATTGTTTGAAGAATA+GGG + chr7_3:81894467-81894486 None:intergenic 25.0%
! TTGAAGATTGTTTGAAGAAT+AGG + chr7_3:81894468-81894487 None:intergenic 25.0%
! TTCTTCAAACAATCTTCAAA+AGG - chr7_3:81894469-81894488 Msa1129880:intron 25.0%
! AAACAATCTTCAAAAGGAAA+CGG - chr7_3:81894475-81894494 Msa1129880:intron 25.0%
!! TTATCTTTACATTTTACCCA+TGG - chr7_3:81894667-81894686 Msa1129880:intron 25.0%
!! CTAACCAAAAAAACTTTTTG+TGG - chr7_3:81894916-81894935 Msa1129880:intron 25.0%
!!! TTGACCACAAAAAGTTTTTT+TGG + chr7_3:81894923-81894942 None:intergenic 25.0%
! TTAATAAAAACACTGTACTG+CGG - chr7_3:81895123-81895142 Msa1129880:intron 25.0%
! TTCTTTAATGCTTTGATATC+AGG - chr7_3:81895223-81895242 Msa1129880:intron 25.0%
! TCTTTAATGCTTTGATATCA+GGG - chr7_3:81895224-81895243 Msa1129880:intron 25.0%
! TGTGAATGTAATTCATTATC+AGG + chr7_3:81895765-81895784 None:intergenic 25.0%
!!! ATTTTTTATGGACAACAAGA+AGG - chr7_3:81895837-81895856 Msa1129880:CDS 25.0%
! TTATACCATAAGAAAATCAG+TGG + chr7_3:81896151-81896170 None:intergenic 25.0%
!! AGGCAAAACAATATTTTTCA+AGG + chr7_3:81896433-81896452 None:intergenic 25.0%
! AAATACATCACAAGTAAATG+AGG + chr7_3:81896453-81896472 None:intergenic 25.0%
! TACCTATACCATGATAAATA+AGG - chr7_3:81896530-81896549 Msa1129880:five_prime_UTR 25.0%
!! TACCTTATTTATCATGGTAT+AGG + chr7_3:81896535-81896554 None:intergenic 25.0%
! TATACCATGATAAATAAGGT+AGG - chr7_3:81896534-81896553 Msa1129880:five_prime_UTR 25.0%
!! TATACCTACCTTATTTATCA+TGG + chr7_3:81896541-81896560 None:intergenic 25.0%
!! TTCTTGTTGTTATCAAGAGT+GGG + chr7_3:81892750-81892769 None:intergenic 30.0%
!! ATTCTTGTTGTTATCAAGAG+TGG + chr7_3:81892751-81892770 None:intergenic 30.0%
! TAGTTTGATGGTTATGGTAA+TGG - chr7_3:81893001-81893020 Msa1129880:CDS 30.0%
! AGTTTGATGGTTATGGTAAT+GGG - chr7_3:81893002-81893021 Msa1129880:CDS 30.0%
! CAAGTTAATGTATTTGGGTT+TGG - chr7_3:81893209-81893228 Msa1129880:intron 30.0%
TTTCTTCCCTTGATTAGATT+TGG - chr7_3:81893651-81893670 Msa1129880:intron 30.0%
GGATATACGTAGTAAATAAG+AGG + chr7_3:81893698-81893717 None:intergenic 30.0%
!! CCATCAACTTATTTTCACTA+AGG + chr7_3:81893879-81893898 None:intergenic 30.0%
! CCTTAGTGAAAATAAGTTGA+TGG - chr7_3:81893876-81893895 Msa1129880:intron 30.0%
! GATCCAAGAATAATGCTTTT+AGG - chr7_3:81893921-81893940 Msa1129880:intron 30.0%
! TCCAAGAATAATGCTTTTAG+GGG - chr7_3:81893923-81893942 Msa1129880:intron 30.0%
!!! TTTTTGAGTGATGCTGTTAT+AGG + chr7_3:81893985-81894004 None:intergenic 30.0%
! TGTTTGCCATTTATCCAATT+TGG - chr7_3:81894184-81894203 Msa1129880:intron 30.0%
TATGCATTCAATAGGATGTT+GGG - chr7_3:81894250-81894269 Msa1129880:intron 30.0%
ATAAATAGGAATATGAGCCT+TGG + chr7_3:81894553-81894572 None:intergenic 30.0%
TACTTGTGTTAAAGAAACCA+AGG - chr7_3:81894643-81894662 Msa1129880:intron 30.0%
TAGCATATTCAATCAACATG+TGG + chr7_3:81894718-81894737 None:intergenic 30.0%
! AAACTTTTTGTGGTCAAATC+TGG - chr7_3:81894926-81894945 Msa1129880:intron 30.0%
! AGAATATTTCTACCTTCAAG+AGG - chr7_3:81894998-81895017 Msa1129880:intron 30.0%
TTTGATATCATTTCGCTTAC+TGG - chr7_3:81895251-81895270 Msa1129880:intron 30.0%
! AATTCTGATGGACAAATCAT+AGG - chr7_3:81895332-81895351 Msa1129880:intron 30.0%
TTTACCTTGTGAATATTGAG+CGG - chr7_3:81895464-81895483 Msa1129880:intron 30.0%
ACAGAAACTACAAAAGAAAC+AGG + chr7_3:81895507-81895526 None:intergenic 30.0%
! TTTCTGTTATAGCCTTTTTC+TGG - chr7_3:81895520-81895539 Msa1129880:intron 30.0%
!!! TTTTTTGTTCTGCCAGAAAA+AGG + chr7_3:81895535-81895554 None:intergenic 30.0%
AAATCAACTTCTGCCAAAAA+AGG - chr7_3:81895576-81895595 Msa1129880:intron 30.0%
AATCAACTTCTGCCAAAAAA+GGG - chr7_3:81895577-81895596 Msa1129880:intron 30.0%
TAACTATGTAGTGAAATCAG+TGG - chr7_3:81895630-81895649 Msa1129880:intron 30.0%
GAATGTAATTCATTATCAGG+TGG + chr7_3:81895762-81895781 None:intergenic 30.0%
GATAAATAGTTAATCCCTAC+AGG - chr7_3:81895801-81895820 Msa1129880:intron 30.0%
!!! CATTGTCGGTACATTTTTTA+TGG - chr7_3:81895825-81895844 Msa1129880:intron 30.0%
AAATGATGAACATCAAGCTA+TGG - chr7_3:81895984-81896003 Msa1129880:intron 30.0%
AATGATGAACATCAAGCTAT+GGG - chr7_3:81895985-81896004 Msa1129880:intron 30.0%
CAAGTTGTTGAATCATGTAA+TGG + chr7_3:81896017-81896036 None:intergenic 30.0%
CATTACATGATTCAACAACT+TGG - chr7_3:81896015-81896034 Msa1129880:intron 30.0%
CAAATTCTCAATCAGGAATT+TGG + chr7_3:81896255-81896274 None:intergenic 30.0%
!! TAATGCCTCTTCATTTTTGT+GGG - chr7_3:81896498-81896517 Msa1129880:five_prime_UTR 30.0%
! ATCTTGTAAGAAGTGTAGCT+TGG + chr7_3:81892293-81892312 None:intergenic 35.0%
AGAGCTTAATTGGTTGTCAT+TGG + chr7_3:81892454-81892473 None:intergenic 35.0%
TGAATGAGGGTAAAGTATGT+GGG + chr7_3:81892604-81892623 None:intergenic 35.0%
AGAGGTAGACCTAGAAAATA+TGG - chr7_3:81892672-81892691 Msa1129880:CDS 35.0%
!!! TCAGGAGTACCATATTTTCT+AGG + chr7_3:81892684-81892703 None:intergenic 35.0%
!!! AGAAGCTTTTTTAGCAGCTA+GGG + chr7_3:81892712-81892731 None:intergenic 35.0%
!!! TAGAAGCTTTTTTAGCAGCT+AGG + chr7_3:81892713-81892732 None:intergenic 35.0%
GATTTCTTAGAGGTGAAAGA+AGG + chr7_3:81892795-81892814 None:intergenic 35.0%
GAGAGAATGAGATTTCTTAG+AGG + chr7_3:81892805-81892824 None:intergenic 35.0%
AAATCTCATTCTCTCTCTCT+AGG - chr7_3:81892810-81892829 Msa1129880:CDS 35.0%
! GTTTGATGGTTATGGTAATG+GGG - chr7_3:81893003-81893022 Msa1129880:CDS 35.0%
!!! AGGTTTTGAATTTCCCTCTA+TGG - chr7_3:81893438-81893457 Msa1129880:intron 35.0%
!!! GGTTTTGAATTTCCCTCTAT+GGG - chr7_3:81893439-81893458 Msa1129880:intron 35.0%
TTTGGAAGAAAACCCATAGA+GGG + chr7_3:81893454-81893473 None:intergenic 35.0%
CAATGAATTGTCAGTGTGTT+TGG + chr7_3:81893615-81893634 None:intergenic 35.0%
GCTATTGTCTCAATGAGAAA+TGG + chr7_3:81893801-81893820 None:intergenic 35.0%
!! TCCCCTAAAAGCATTATTCT+TGG + chr7_3:81893927-81893946 None:intergenic 35.0%
! TGTGAATTTTCCTGCATCAA+CGG - chr7_3:81894146-81894165 Msa1129880:intron 35.0%
GTATGCATTCAATAGGATGT+TGG - chr7_3:81894249-81894268 Msa1129880:intron 35.0%
ATATGCATTATGTCTGCATC+TGG - chr7_3:81894312-81894331 Msa1129880:intron 35.0%
GTTGAGTGTTATCATAACCA+AGG - chr7_3:81894533-81894552 Msa1129880:CDS 35.0%
! TTTTCTCTTGTCGTAGAATC+AGG - chr7_3:81894606-81894625 Msa1129880:CDS 35.0%
CAGTGGTAATAATGGCTTAT+GGG - chr7_3:81895088-81895107 Msa1129880:intron 35.0%
TAATGCTTTGATATCAGGGT+CGG - chr7_3:81895228-81895247 Msa1129880:intron 35.0%
GTATGCTTGTCTAATTCTGA+TGG - chr7_3:81895320-81895339 Msa1129880:intron 35.0%
GGAACTGCAAATGAATTTGT+AGG - chr7_3:81895410-81895429 Msa1129880:intron 35.0%
CTGCAAATGAATTTGTAGGT+TGG - chr7_3:81895414-81895433 Msa1129880:intron 35.0%
GTAAAACAAATGCAAGACAG+CGG + chr7_3:81895449-81895468 None:intergenic 35.0%
ATCAACTTCTGCCAAAAAAG+GGG - chr7_3:81895578-81895597 Msa1129880:intron 35.0%
AAATCAGTGGAATGAAAAGC+AGG - chr7_3:81895643-81895662 Msa1129880:intron 35.0%
AATCAGTGGAATGAAAAGCA+GGG - chr7_3:81895644-81895663 Msa1129880:intron 35.0%
CTTGATGTTCATCATTTCCT+CGG + chr7_3:81895981-81896000 None:intergenic 35.0%
ATAAGAAAATCAGTGGAGGA+TGG + chr7_3:81896144-81896163 None:intergenic 35.0%
!!! ATCCTCCACTGATTTTCTTA+TGG - chr7_3:81896143-81896162 Msa1129880:CDS 35.0%
TACCATAAGAAAATCAGTGG+AGG + chr7_3:81896148-81896167 None:intergenic 35.0%
TCCTGATTGAGAATTTGAGA+TGG - chr7_3:81896258-81896277 Msa1129880:CDS 35.0%
TACAACTGTTAACCAGACAT+TGG + chr7_3:81896302-81896321 None:intergenic 35.0%
!! CTAATGCCTCTTCATTTTTG+TGG - chr7_3:81896497-81896516 Msa1129880:five_prime_UTR 35.0%
TATATTTCCCTTCCGTTTCA+AGG - chr7_3:81896597-81896616 Msa1129880:five_prime_UTR 35.0%
! GTAAGAAGTGTAGCTTGGAT+GGG + chr7_3:81892288-81892307 None:intergenic 40.0%
! TGTAAGAAGTGTAGCTTGGA+TGG + chr7_3:81892289-81892308 None:intergenic 40.0%
GGTGGAAGAAAGAGCTTAAT+TGG + chr7_3:81892464-81892483 None:intergenic 40.0%
TTTGGTAAAAGACCGTTCGT+CGG + chr7_3:81892570-81892589 None:intergenic 40.0%
! GAACGGTCTTTTACCAAACA+CGG - chr7_3:81892572-81892591 Msa1129880:three_prime_UTR 40.0%
! GTCTTTTACCAAACACGGAT+GGG - chr7_3:81892577-81892596 Msa1129880:three_prime_UTR 40.0%
CTGAATGAGGGTAAAGTATG+TGG + chr7_3:81892605-81892624 None:intergenic 40.0%
CATACTTTACCCTCATTCAG+TGG - chr7_3:81892605-81892624 Msa1129880:three_prime_UTR 40.0%
TTAGAGGTGAAAGAAGGAGA+AGG + chr7_3:81892789-81892808 None:intergenic 40.0%
! TTTTGAATTTCTGCACCACC+TGG - chr7_3:81893134-81893153 Msa1129880:intron 40.0%
! CTTTGGAAGAAAACCCATAG+AGG + chr7_3:81893455-81893474 None:intergenic 40.0%
AATAAGTGCCAAAACAACCG+TGG + chr7_3:81893728-81893747 None:intergenic 40.0%
TTAGTCCTAGACGAGATATC+AGG - chr7_3:81893746-81893765 Msa1129880:intron 40.0%
TGAGAAATGGCTGAGCATAT+CGG + chr7_3:81893788-81893807 None:intergenic 40.0%
TGGCGAACTTAAAGGAGAAA+GGG + chr7_3:81894083-81894102 None:intergenic 40.0%
AGATCCTAAAACATCTTGGC+TGG + chr7_3:81894106-81894125 None:intergenic 40.0%
AGGAGGCAACATTATGTATG+AGG - chr7_3:81894374-81894393 Msa1129880:intron 40.0%
CTGTTGAAACTTGCAGCATA+TGG - chr7_3:81894500-81894519 Msa1129880:intron 40.0%
TACCCATGGTGTTCCAAAAA+AGG - chr7_3:81894681-81894700 Msa1129880:intron 40.0%
!!! TGCCTTTTTTGGAACACCAT+GGG + chr7_3:81894686-81894705 None:intergenic 40.0%
TTTGTGGTCAAATCTGGATG+TGG - chr7_3:81894932-81894951 Msa1129880:intron 40.0%
TCAAATCTGGATGTGGATGT+TGG - chr7_3:81894939-81894958 Msa1129880:intron 40.0%
TTAATGTTAGTGCGTAGCAG+TGG - chr7_3:81895071-81895090 Msa1129880:intron 40.0%
GCAGTGGTAATAATGGCTTA+TGG - chr7_3:81895087-81895106 Msa1129880:intron 40.0%
TCCTATGTCCGTAATGAAAC+CGG - chr7_3:81895275-81895294 Msa1129880:intron 40.0%
! TCTGATGGACAAATCATAGG+TGG - chr7_3:81895335-81895354 Msa1129880:intron 40.0%
!! CCTTCTAAGATTACCTGAAC+TGG + chr7_3:81895392-81895411 None:intergenic 40.0%
CCAGTTCAGGTAATCTTAGA+AGG - chr7_3:81895389-81895408 Msa1129880:intron 40.0%
AGAACCGCTCAATATTCACA+AGG + chr7_3:81895471-81895490 None:intergenic 40.0%
TCAACTTCTGCCAAAAAAGG+GGG - chr7_3:81895579-81895598 Msa1129880:intron 40.0%
AAAAAAGGGGGAAATGAGGT+GGG - chr7_3:81895591-81895610 Msa1129880:intron 40.0%
ATTCATTATCAGGTGGTGCT+TGG + chr7_3:81895755-81895774 None:intergenic 40.0%
TAATCCCTACAGGTCATTGT+CGG - chr7_3:81895811-81895830 Msa1129880:intron 40.0%
TGGAAACCTAAACTTGATGC+TGG + chr7_3:81895925-81895944 None:intergenic 40.0%
TGTTCATCATTTCCTCGGAT+TGG + chr7_3:81895976-81895995 None:intergenic 40.0%
TAACCAGCATGTCTTGAATC+TGG + chr7_3:81896084-81896103 None:intergenic 40.0%
! GGTATGAAGTCCAGTGATTT+TGG - chr7_3:81896114-81896133 Msa1129880:CDS 40.0%
GGATGGTATACCAAAATCAC+TGG + chr7_3:81896127-81896146 None:intergenic 40.0%
AGCGAAGTTCTCAATATTGC+AGG - chr7_3:81896181-81896200 Msa1129880:CDS 40.0%
CTCAATATTGCAGGAAGAAC+AGG - chr7_3:81896190-81896209 Msa1129880:CDS 40.0%
GCCATCTCAAATTCTCAATC+AGG + chr7_3:81896262-81896281 None:intergenic 40.0%
! TGAGAATTTGAGATGGCTTG+TGG - chr7_3:81896265-81896284 Msa1129880:CDS 40.0%
! GAGAATTTGAGATGGCTTGT+GGG - chr7_3:81896266-81896285 Msa1129880:CDS 40.0%
ACAGACCCACAAAAATGAAG+AGG + chr7_3:81896506-81896525 None:intergenic 40.0%
! ATGCTTCCTAGCTTAGTTTG+TGG - chr7_3:81896572-81896591 Msa1129880:five_prime_UTR 40.0%
!! TGCTTCCTAGCTTAGTTTGT+GGG - chr7_3:81896573-81896592 Msa1129880:five_prime_UTR 40.0%
TATAGCCCACAAACTAAGCT+AGG + chr7_3:81896581-81896600 None:intergenic 40.0%
!! TGACTTGATTTGTGCTGCCA+CGG + chr7_3:81892419-81892438 None:intergenic 45.0%
!! GTTGTTGTTGTTGGTGGTTG+TGG + chr7_3:81892488-81892507 None:intergenic 45.0%
!! GTTGCTGGTGTTGTTGTTGT+TGG + chr7_3:81892497-81892516 None:intergenic 45.0%
!!! TGGAGTTTTGTTGCTGTTGC+TGG + chr7_3:81892512-81892531 None:intergenic 45.0%
! GGTCTTTTACCAAACACGGA+TGG - chr7_3:81892576-81892595 Msa1129880:three_prime_UTR 45.0%
CAGAAGAAGCCACTGAATGA+GGG + chr7_3:81892617-81892636 None:intergenic 45.0%
!! TTATGGTAATGGGGTGATGC+AGG - chr7_3:81893012-81893031 Msa1129880:CDS 45.0%
ACGTATATCCTTAGCCACCA+CGG - chr7_3:81893708-81893727 Msa1129880:intron 45.0%
CCAAACCTGATATCTCGTCT+AGG + chr7_3:81893754-81893773 None:intergenic 45.0%
CCTAGACGAGATATCAGGTT+TGG - chr7_3:81893751-81893770 Msa1129880:intron 45.0%
AGACGAGATATCAGGTTTGG+AGG - chr7_3:81893754-81893773 Msa1129880:intron 45.0%
GTGGCGAACTTAAAGGAGAA+AGG + chr7_3:81894084-81894103 None:intergenic 45.0%
TCCTAAAACATCTTGGCTGG+TGG + chr7_3:81894103-81894122 None:intergenic 45.0%
TAGTCAAACACCGTTGATGC+AGG + chr7_3:81894159-81894178 None:intergenic 45.0%
!!! GTGCCTTTTTTGGAACACCA+TGG + chr7_3:81894687-81894706 None:intergenic 45.0%
!!! GGATGCACAAGTGCCTTTTT+TGG + chr7_3:81894697-81894716 None:intergenic 45.0%
AATCTGGATGTGGATGTTGG+AGG - chr7_3:81894942-81894961 Msa1129880:intron 45.0%
CTACCTTCAAGAGGACAGAT+AGG - chr7_3:81895007-81895026 Msa1129880:intron 45.0%
GTGCGTAGCAGTGGTAATAA+TGG - chr7_3:81895080-81895099 Msa1129880:intron 45.0%
TCCGGTTTCATTACGGACAT+AGG + chr7_3:81895279-81895298 None:intergenic 45.0%
TATGTCCGTAATGAAACCGG+AGG - chr7_3:81895278-81895297 Msa1129880:intron 45.0%
ATGTCCGTAATGAAACCGGA+GGG - chr7_3:81895279-81895298 Msa1129880:intron 45.0%
GATGGACAAATCATAGGTGG+TGG - chr7_3:81895338-81895357 Msa1129880:intron 45.0%
! CAAATCATAGGTGGTGGTGT+TGG - chr7_3:81895344-81895363 Msa1129880:intron 45.0%
! AACTGGACCAGCAGCTTTAA+GGG + chr7_3:81895375-81895394 None:intergenic 45.0%
TGCCAAAAAAGGGGGAAATG+AGG - chr7_3:81895587-81895606 Msa1129880:intron 45.0%
!!! CACCTCATTTCCCCCTTTTT+TGG + chr7_3:81895592-81895611 None:intergenic 45.0%
CAAAAAAGGGGGAAATGAGG+TGG - chr7_3:81895590-81895609 Msa1129880:intron 45.0%
ATTATCAGGTGGTGCTTGGT+AGG + chr7_3:81895751-81895770 None:intergenic 45.0%
! TGTACCGACAATGACCTGTA+GGG + chr7_3:81895818-81895837 None:intergenic 45.0%
! ATGTACCGACAATGACCTGT+AGG + chr7_3:81895819-81895838 None:intergenic 45.0%
AACAAGAAGGACACTAGTGC+TGG - chr7_3:81895850-81895869 Msa1129880:CDS 45.0%
GATGAACATCAAGCTATGGG+TGG - chr7_3:81895988-81896007 Msa1129880:intron 45.0%
CATCCAGATTCAAGACATGC+TGG - chr7_3:81896078-81896097 Msa1129880:intron 45.0%
ATTGCAGGAAGAACAGGTCA+TGG - chr7_3:81896196-81896215 Msa1129880:CDS 45.0%
TTGCAGGAAGAACAGGTCAT+GGG - chr7_3:81896197-81896216 Msa1129880:CDS 45.0%
TTGGTCATAGCCTCCATTCT+CGG + chr7_3:81896236-81896255 None:intergenic 45.0%
CAAAGACTGCTGGTATGTAG+TGG + chr7_3:81896331-81896350 None:intergenic 45.0%
CGGATGGCGCATACTATAAA+TGG + chr7_3:81896364-81896383 None:intergenic 45.0%
ATAGTATGCGCCATCCGTTA+AGG - chr7_3:81896367-81896386 Msa1129880:CDS 45.0%
!!! TTTTTTTTTTTTTTTTTTGA+TGG - chr7_3:81893279-81893298 Msa1129880:intron 5.0%
!! TGTTTATTATTTATTATAAA+AGG - chr7_3:81893415-81893434 Msa1129880:intron 5.0%
AAAAATTGCAGCGTCAGCCG+TGG - chr7_3:81892399-81892418 Msa1129880:three_prime_UTR 50.0%
!! GTTGTTGTTGGTGGTTGTGG+TGG + chr7_3:81892485-81892504 None:intergenic 50.0%
!! GCTGGTGTTGTTGTTGTTGG+TGG + chr7_3:81892494-81892513 None:intergenic 50.0%
GCAGAAGAAGCCACTGAATG+AGG + chr7_3:81892618-81892637 None:intergenic 50.0%
CTCAGCTTGAACCAGCTAAG+AGG - chr7_3:81892646-81892665 Msa1129880:CDS 50.0%
GAACCAGCTAAGAGGAAGAG+AGG - chr7_3:81892654-81892673 Msa1129880:CDS 50.0%
CTACCTCTCTTCCTCTTAGC+TGG + chr7_3:81892660-81892679 None:intergenic 50.0%
! TTAGCAGCTAGGGCTTGTTC+AGG + chr7_3:81892702-81892721 None:intergenic 50.0%
! CATGTCATTGCTGTTGCTGC+TGG - chr7_3:81893060-81893079 Msa1129880:CDS 50.0%
ACCTGGTAAGTACAGTGACG+CGG - chr7_3:81893151-81893170 Msa1129880:intron 50.0%
CAAAACAACCGTGGTGGCTA+AGG + chr7_3:81893719-81893738 None:intergenic 50.0%
! CTTAGCCACCACGGTTGTTT+TGG - chr7_3:81893717-81893736 Msa1129880:intron 50.0%
AAGTGCCAAAACAACCGTGG+TGG + chr7_3:81893725-81893744 None:intergenic 50.0%
GGGGACACTCTAGTAACATC+TGG - chr7_3:81893942-81893961 Msa1129880:intron 50.0%
! TTGGCTGGTGGCGAACTTAA+AGG + chr7_3:81894091-81894110 None:intergenic 50.0%
! GCCACCAGCCAAGATGTTTT+AGG - chr7_3:81894099-81894118 Msa1129880:intron 50.0%
!! ACGGAGAGAGGCATTAGAGA+TGG + chr7_3:81894340-81894359 None:intergenic 50.0%
! CTCCTGAAGATGCTGGTTGA+CGG + chr7_3:81894359-81894378 None:intergenic 50.0%
ATGTTGCCTCCTGAAGATGC+TGG + chr7_3:81894366-81894385 None:intergenic 50.0%
TGCACGCATCTGTGTGCTTA+TGG - chr7_3:81894863-81894882 Msa1129880:intron 50.0%
CGTCCTATCTGTCCTCTTGA+AGG + chr7_3:81895013-81895032 None:intergenic 50.0%
TTCGCCCTCCGGTTTCATTA+CGG + chr7_3:81895286-81895305 None:intergenic 50.0%
! ATCATAGGTGGTGGTGTTGG+TGG - chr7_3:81895347-81895366 Msa1129880:intron 50.0%
!! TCATAGGTGGTGGTGTTGGT+GGG - chr7_3:81895348-81895367 Msa1129880:intron 50.0%
!! ACTGGACCAGCAGCTTTAAG+GGG + chr7_3:81895374-81895393 None:intergenic 50.0%
GAACTGGACCAGCAGCTTTA+AGG + chr7_3:81895376-81895395 None:intergenic 50.0%
TAAAGCTGCTGGTCCAGTTC+AGG - chr7_3:81895376-81895395 Msa1129880:intron 50.0%
TAGGTGTGAAAGCAGGAAGG+TGG + chr7_3:81895732-81895751 None:intergenic 50.0%
TGGTAGGTGTGAAAGCAGGA+AGG + chr7_3:81895735-81895754 None:intergenic 50.0%
TGCTTGGTAGGTGTGAAAGC+AGG + chr7_3:81895739-81895758 None:intergenic 50.0%
! AAGAAGGACACTAGTGCTGG+TGG - chr7_3:81895853-81895872 Msa1129880:CDS 50.0%
!! GACACTAGTGCTGGTGGAAA+AGG - chr7_3:81895859-81895878 Msa1129880:CDS 50.0%
GATGGCAACTTACCAGCAGA+GGG + chr7_3:81895889-81895908 None:intergenic 50.0%
TGATGGCAACTTACCAGCAG+AGG + chr7_3:81895890-81895909 None:intergenic 50.0%
GGTAAGTTGCCATCACCAGT+TGG - chr7_3:81895895-81895914 Msa1129880:intron 50.0%
TGGAAGAGTCGACTGTTTGG+TGG + chr7_3:81895945-81895964 None:intergenic 50.0%
! CAAACAGTCGACTCTTCCAG+CGG - chr7_3:81895946-81895965 Msa1129880:intron 50.0%
! AAACAGTCGACTCTTCCAGC+GGG - chr7_3:81895947-81895966 Msa1129880:intron 50.0%
! CATGCTGGTTATGACCTGTC+AGG - chr7_3:81896093-81896112 Msa1129880:CDS 50.0%
CACTGGACTTCATACCTGAC+AGG + chr7_3:81896110-81896129 None:intergenic 50.0%
TGGTCATAGCCTCCATTCTC+GGG + chr7_3:81896235-81896254 None:intergenic 50.0%
TACCAGCAGTCTTTGTCACG+AGG - chr7_3:81896336-81896355 Msa1129880:CDS 50.0%
GTCAGAAGCCACGACCTTAA+CGG + chr7_3:81896384-81896403 None:intergenic 50.0%
GCAAGCACCTTGAAACGGAA+GGG + chr7_3:81896607-81896626 None:intergenic 50.0%
AGCAAGCACCTTGAAACGGA+AGG + chr7_3:81896608-81896627 None:intergenic 50.0%
!! GTTGTTGGTGGTTGTGGTGG+TGG + chr7_3:81892482-81892501 None:intergenic 55.0%
!! GGTGGTGGTGGTTGTGGATA+CGG + chr7_3:81892538-81892557 None:intergenic 55.0%
AAGACCGTTCGTCGGAGATG+CGG + chr7_3:81892562-81892581 None:intergenic 55.0%
ATGTGGGACCCATCCGTGTT+TGG + chr7_3:81892588-81892607 None:intergenic 55.0%
GATGCAGGCAATGCAGGACA+AGG - chr7_3:81893027-81893046 Msa1129880:CDS 55.0%
! CATTGCTGTTGCTGCTGGTG+AGG - chr7_3:81893065-81893084 Msa1129880:CDS 55.0%
GCGTCACTGTACTTACCAGG+TGG + chr7_3:81893152-81893171 None:intergenic 55.0%
CCTGGTAAGTACAGTGACGC+GGG - chr7_3:81893152-81893171 Msa1129880:intron 55.0%
! AGATGCTGGTTGACGGAGAG+AGG + chr7_3:81894352-81894371 None:intergenic 55.0%
CTCCGTCAACCAGCATCTTC+AGG - chr7_3:81894354-81894373 Msa1129880:intron 55.0%
CGTCAACCAGCATCTTCAGG+AGG - chr7_3:81894357-81894376 Msa1129880:intron 55.0%
AATGAAACCGGAGGGCGAAG+TGG - chr7_3:81895287-81895306 Msa1129880:intron 55.0%
GGAAAAGGTGATCCCTCTGC+TGG - chr7_3:81895874-81895893 Msa1129880:intron 55.0%
GGCGAGCCAGCATCAAGTTT+AGG - chr7_3:81895916-81895935 Msa1129880:intron 55.0%
CGCTGGAAGAGTCGACTGTT+TGG + chr7_3:81895948-81895967 None:intergenic 55.0%
ACCTCCCAGGTCTACAGAGT+GGG - chr7_3:81896050-81896069 Msa1129880:intron 55.0%
TCTCACCAGTCTCCCGAGAA+TGG - chr7_3:81896220-81896239 Msa1129880:CDS 55.0%
! GAGATGGCTTGTGGGTTCGA+TGG - chr7_3:81896274-81896293 Msa1129880:CDS 55.0%
GGTTCGATGGCACCAATGTC+TGG - chr7_3:81896287-81896306 Msa1129880:CDS 55.0%
CACCTCGTGACAAAGACTGC+TGG + chr7_3:81896341-81896360 None:intergenic 55.0%
GAAGCCACGACCTTAACGGA+TGG + chr7_3:81896380-81896399 None:intergenic 55.0%
GGTGGTTGTGGATACGGTGG+TGG + chr7_3:81892532-81892551 None:intergenic 60.0%
! GGTGGTGGTTGTGGATACGG+TGG + chr7_3:81892535-81892554 None:intergenic 60.0%
ACCACCGCATCTCCGACGAA+CGG - chr7_3:81892555-81892574 Msa1129880:three_prime_UTR 60.0%
TGGGGTGATGCAGGCAATGC+AGG - chr7_3:81893021-81893040 Msa1129880:CDS 60.0%
CCCGCGTCACTGTACTTACC+AGG + chr7_3:81893155-81893174 None:intergenic 60.0%
AAGACCACCACTTCGCCCTC+CGG + chr7_3:81895297-81895316 None:intergenic 60.0%
!! CTTGATGCTGGCTCGCCAAC+TGG + chr7_3:81895913-81895932 None:intergenic 60.0%
TCCAGCGGGAATCCAATCCG+AGG - chr7_3:81895961-81895980 Msa1129880:intron 60.0%
! TCCTCGGATTGGATTCCCGC+TGG + chr7_3:81895965-81895984 None:intergenic 60.0%
GTTTGCACGTGACACCTCCC+AGG - chr7_3:81896037-81896056 Msa1129880:intron 60.0%
CACCTCCCAGGTCTACAGAG+TGG - chr7_3:81896049-81896068 Msa1129880:intron 60.0%
CCTCCCAGGTCTACAGAGTG+GGG - chr7_3:81896051-81896070 Msa1129880:intron 60.0%
CTCCCAGGTCTACAGAGTGG+GGG - chr7_3:81896052-81896071 Msa1129880:intron 60.0%
CTCCCCCACTCTGTAGACCT+GGG + chr7_3:81896057-81896076 None:intergenic 60.0%
ACTCCCCCACTCTGTAGACC+TGG + chr7_3:81896058-81896077 None:intergenic 60.0%
CACCAGTCTCCCGAGAATGG+AGG - chr7_3:81896223-81896242 Msa1129880:CDS 60.0%
AGCCTCCATTCTCGGGAGAC+TGG + chr7_3:81896228-81896247 None:intergenic 60.0%
TGCGCCATCCGTTAAGGTCG+TGG - chr7_3:81896373-81896392 Msa1129880:CDS 60.0%
!! TGCGGTGGTGGTGGTGGTTG+TGG + chr7_3:81892544-81892563 None:intergenic 65.0%
GTTCGTCGGAGATGCGGTGG+TGG + chr7_3:81892556-81892575 None:intergenic 65.0%
ACCGTTCGTCGGAGATGCGG+TGG + chr7_3:81892559-81892578 None:intergenic 65.0%
GAAACCGGAGGGCGAAGTGG+TGG - chr7_3:81895290-81895309 Msa1129880:intron 65.0%
GGTGGGCCCCTTAAAGCTGC+TGG - chr7_3:81895365-81895384 Msa1129880:intron 65.0%
!! GCTGGCTCGCCAACTGGTGA+TGG + chr7_3:81895907-81895926 None:intergenic 65.0%
CCCCACTCTGTAGACCTGGG+AGG + chr7_3:81896054-81896073 None:intergenic 65.0%
!! CGGAGATGCGGTGGTGGTGG+TGG + chr7_3:81892550-81892569 None:intergenic 70.0%
! CGTCGGAGATGCGGTGGTGG+TGG + chr7_3:81892553-81892572 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 81892284 81896629 81892284 ID=Msa1129880;Name=Msa1129880
chr7_3 mRNA 81892284 81896629 81892284 ID=Msa1129880-mRNA-1;Parent=Msa1129880;Name=Msa1129880-mRNA-1;_AED=0.09;_eAED=0.09;_QI=160|1|1|1|1|1|6|362|360
chr7_3 exon 81892284 81892710 81892284 ID=Msa1129880-mRNA-1:exon:23974;Parent=Msa1129880-mRNA-1
chr7_3 exon 81892799 81893090 81892799 ID=Msa1129880-mRNA-1:exon:23973;Parent=Msa1129880-mRNA-1
chr7_3 exon 81893516 81893668 81893516 ID=Msa1129880-mRNA-1:exon:23972;Parent=Msa1129880-mRNA-1
chr7_3 exon 81894518 81894649 81894518 ID=Msa1129880-mRNA-1:exon:23971;Parent=Msa1129880-mRNA-1
chr7_3 exon 81895827 81895879 81895827 ID=Msa1129880-mRNA-1:exon:23970;Parent=Msa1129880-mRNA-1
chr7_3 exon 81896082 81896629 81896082 ID=Msa1129880-mRNA-1:exon:23969;Parent=Msa1129880-mRNA-1
chr7_3 five_prime_UTR 81896470 81896629 81896470 ID=Msa1129880-mRNA-1:five_prime_utr;Parent=Msa1129880-mRNA-1
chr7_3 CDS 81896082 81896469 81896082 ID=Msa1129880-mRNA-1:cds;Parent=Msa1129880-mRNA-1
chr7_3 CDS 81895827 81895879 81895827 ID=Msa1129880-mRNA-1:cds;Parent=Msa1129880-mRNA-1
chr7_3 CDS 81894518 81894649 81894518 ID=Msa1129880-mRNA-1:cds;Parent=Msa1129880-mRNA-1
chr7_3 CDS 81893516 81893668 81893516 ID=Msa1129880-mRNA-1:cds;Parent=Msa1129880-mRNA-1
chr7_3 CDS 81892799 81893090 81892799 ID=Msa1129880-mRNA-1:cds;Parent=Msa1129880-mRNA-1
chr7_3 CDS 81892646 81892710 81892646 ID=Msa1129880-mRNA-1:cds;Parent=Msa1129880-mRNA-1
chr7_3 three_prime_UTR 81892284 81892645 81892284 ID=Msa1129880-mRNA-1:three_prime_utr;Parent=Msa1129880-mRNA-1
Gene Sequence

>Msa1129880

ATGGACTCCAATGACAACCAATTAAGCTCTTTCTTCCACCACCACAACCACCAACAACAACAACACCAGCAACAGCAACAAAACTCCACCACCGTATCCACAACCACCACCACCACCGCATCTCCGACGAACGGTCTTTTACCAAACACGGATGGGTCCCACATACTTTACCCTCATTCAGTGGCTTCTTCTGCTGTTTCTTCTCAGCTTGAACCAGCTAAGAGGAAGAGAGGTAGACCTAGAAAATATGGTACTCCTGAACAAGCCCTAGCTGCTAAAAAAGCTTCTACGTCGTCGTTTTCTCCCACTCTTGATAACAACAAGAATACTCACTCTTTCTCTCCTTCTCCTTCTTTCACCTCTAAGAAATCTCATTCTCTCTCTCTAGGCAATGCAGGACAAGGTTTCAGTGCACATGTCATTGCTGTTGCTGCTGGTGAGGATGTTGGGCAGAAAATTATGCAATTTATGCAACAAAATAGGGGTGAGATATGCATTATGTCTGCATCTGGTTCCATCTCTAATGCCTCTCTCCGTCAACCAGCATCTTCAGGAGGCAACATTATGTATGAGGGTCGGTTTGATATCATTTCGCTTACTGGTTCCTATGTCCGTAATGAAACCGGAGGGCGAAGTGGTGGTCTTAGCGTATGCTTGTCTAATTCTGATGGACAAATCATAGGTGGTGGTGTTGGTGGGCCCCTTAAAGCTGCTGGTCCAGTTCAGGTCATTGTCGGTACATTTTTTATGGACAACAAGAAGGACACTAGTGCTGGTGGAAAAGGTGATCCCTCTGCTGGTAAGTTGCCATCACCAGTTGGCGAGCCAGCATCAAGTTTAGGTTTCCACCAAACAGTCGACTCTTCCAGCGGGAATCCAATCCGAGGAAATGATGAACATCAAGCTATGGGTGGAAGCCATTACATGATTCAACAACTTGGTTTGCACGTGACACCTCCCAGGTCTACAGAGTGGGGGAGTCATCCAGATTCAAGACATGCTGGTTATGACCTGTCAGGAAGAACAGGTCATGGGTCTCACCAGTCTCCCGAGAATGGAGGCTATGACCAAATTCCTGATTGA
Protein sequence

>Msa1129880

MDSNDNQLSSFFHHHNHQQQQHQQQQQNSTTVSTTTTTTASPTNGLLPNTDGSHILYPHSVASSAVSSQLEPAKRKRGRPRKYGTPEQALAAKKASTSSFSPTLDNNKNTHSFSPSPSFTSKKSHSLSLGNAGQGFSAHVIAVAAGEDVGQKIMQFMQQNRGEICIMSASGSISNASLRQPASSGGNIMYEGRFDIISLTGSYVRNETGGRSGGLSVCLSNSDGQIIGGGVGGPLKAAGPVQVIVGTFFMDNKKDTSAGGKGDPSAGKLPSPVGEPASSLGFHQTVDSSSGNPIRGNDEHQAMGGSHYMIQQLGLHVTPPRSTEWGSHPDSRHAGYDLSGRTGHGSHQSPENGGYDQIPD*