AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0037650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0037650 MtrunA17_Chr3g0115691 97.238 181 5 0 1 181 162 342 6.62e-129 365
Msa0037650 MtrunA17_Chr2g0304641 54.494 178 75 2 4 180 170 342 1.53e-64 201
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0037650 AT1G78140.1 75.000 180 44 1 2 180 175 354 4.07e-99 290
Msa0037650 AT2G41040.1 50.829 181 78 3 4 180 179 352 6.20e-58 185

Find 101 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAAATTTGTGTACTCTTT+TGG 0.188572 1_1:+66759899 None:intergenic
TAGAATATAAATCAAGTATC+AGG 0.201212 1_1:-66758502 Msa0037650:CDS
TCTGCTGCAAAGCCGAAATA+AGG 0.286504 1_1:-66758379 Msa0037650:intron
AGGAAACTCAAACCTTATTT+CGG 0.331192 1_1:+66758367 None:intergenic
GGTTTCCTAAAACCAGTATT+AGG 0.339433 1_1:-66760070 Msa0037650:CDS
ATGATATTTCCACCTAATAC+TGG 0.344800 1_1:+66760058 None:intergenic
GGATTTAAATGCATTAGAAA+TGG 0.364474 1_1:-66758418 Msa0037650:CDS
TATGACATGCAGATAATCTA+AGG 0.366711 1_1:+66758169 None:intergenic
ACAGAATTGTGATGAGTTCA+TGG 0.390984 1_1:+66757964 None:intergenic
AGAAGACGAAGTTGAAGCTT+AGG 0.393539 1_1:+66762656 None:intergenic
TGTTGCAACCACCTACATAC+TGG 0.395943 1_1:-66759078 Msa0037650:CDS
ATTATCTGCATGTCATAAGT+TGG 0.399907 1_1:-66758163 Msa0037650:three_prime_UTR
ATAAGTAATGCTAAGAACTA+TGG 0.406172 1_1:-66761568 Msa0037650:five_prime_UTR
TACTAAGAGCAGCAATCCTT+TGG 0.415416 1_1:-66762283 Msa0037650:five_prime_UTR
AAGCGCGTGGGGCGCGTGAA+TGG 0.427643 1_1:+66762695 None:intergenic
CCTATCATAATTCGAATCTC+TGG 0.434478 1_1:+66762746 None:intergenic
CAATATTATTACCGTTGGAT+TGG 0.439591 1_1:+66762598 None:intergenic
AATAAAGTAGAAGGGTCAAA+TGG 0.439677 1_1:+66758023 None:intergenic
CATTGATAAAGCAGGATTAG+TGG 0.440360 1_1:+66762227 None:intergenic
GATTTAAATGCATTAGAAAT+GGG 0.440850 1_1:-66758417 Msa0037650:CDS
GCCGCAGTTTGAACAGATGA+AGG 0.448015 1_1:-66760092 Msa0037650:intron
TGATGAGTTCATGGAGTTCA+TGG 0.451481 1_1:+66757973 None:intergenic
GTTAGATTAACCTCTTTCTC+AGG 0.455151 1_1:+66760753 None:intergenic
TAGGTACATTAAGAGTTTAG+AGG 0.457038 1_1:-66760571 Msa0037650:five_prime_UTR
TCTCTGCAAGGCGTGTGGGC+TGG 0.459953 1_1:-66758443 Msa0037650:CDS
CCAGAGATTCGAATTATGAT+AGG 0.461106 1_1:-66762746 Msa0037650:five_prime_UTR
TCACTTGGTACATAAAGATA+AGG 0.470936 1_1:-66758227 Msa0037650:three_prime_UTR
ATGTTATGAATTTGTTCAGC+AGG 0.472552 1_1:-66759933 Msa0037650:CDS
AAGTTCACGTTCAGAGAGAA+AGG 0.474732 1_1:+66758471 None:intergenic
TTCAAGATGCGTTTGGTCAC+CGG 0.475232 1_1:+66761600 None:intergenic
CTGAAAAGCTCAGTGGAAGC+TGG 0.480418 1_1:+66761535 None:intergenic
TGCAAGGCGTGTGGGCTGGT+CGG 0.485394 1_1:-66758439 Msa0037650:CDS
CATTTCTCACACATCATGAA+TGG 0.489996 1_1:+66758081 None:intergenic
TCGTGAGTTCAAGATGCGTT+TGG 0.491834 1_1:+66761593 None:intergenic
ATCGATGCTAGTTGTGGAAG+TGG 0.499787 1_1:-66760037 Msa0037650:CDS
ATCATCACTTCACTTGGAAA+AGG 0.500065 1_1:-66758136 Msa0037650:three_prime_UTR
TTACCGTTGGATTGGTGTCA+AGG 0.502570 1_1:+66762606 None:intergenic
AAATTGGGATTGTAAGTAAG+AGG 0.506975 1_1:-66762852 Msa0037650:five_prime_UTR
CAGGAGCAGCTCTTCACTGT+TGG 0.508797 1_1:-66759690 Msa0037650:CDS
GGGTGGACCGTTGAAGTTGA+AGG 0.508818 1_1:+66762821 None:intergenic
GAAGCTCTCTGCAAGGCGTG+TGG 0.509317 1_1:-66758448 Msa0037650:CDS
TTATCTGCATGTCATAAGTT+GGG 0.509558 1_1:-66758162 Msa0037650:three_prime_UTR
GGATTCCATTGCAGTGGAGA+AGG 0.510017 1_1:-66762310 Msa0037650:five_prime_UTR
TATGTTATAACGCGTTGACT+TGG 0.512738 1_1:-66762251 Msa0037650:five_prime_UTR
TTAACCTCTTTCTCAGGACC+TGG 0.515325 1_1:+66760759 None:intergenic
GCAGCAGAAATCATCACAAA+AGG 0.517241 1_1:+66758394 None:intergenic
GTTAAAAGCGTGGTTTCACT+TGG 0.525905 1_1:-66758242 Msa0037650:three_prime_UTR
TCCTGCATGCACAGCATCGA+TGG 0.526627 1_1:+66759708 None:intergenic
GGGAAGATCATCACTTCACT+TGG 0.526770 1_1:-66758142 Msa0037650:three_prime_UTR
TCCATCGATGCTGTGCATGC+AGG 0.527473 1_1:-66759709 Msa0037650:CDS
TACAACAACACAAGGGGAGG+GGG 0.529011 1_1:+66762801 None:intergenic
CATTTCTCTATGAGAGGGGC+TGG 0.529730 1_1:-66760812 Msa0037650:five_prime_UTR
TGTTGTTGTAAAGTTGAAGA+AGG 0.534991 1_1:-66762788 Msa0037650:five_prime_UTR
CCAACTTACATTGATAAAGC+AGG 0.535319 1_1:+66762219 None:intergenic
TTACAACAACACAAGGGGAG+GGG 0.536715 1_1:+66762800 None:intergenic
TGTTAAGGATTCCATTGCAG+TGG 0.539065 1_1:-66762316 Msa0037650:intron
AAGCTCTCTGCAAGGCGTGT+GGG 0.541226 1_1:-66758447 Msa0037650:CDS
TGGTATCATTTCTCTATGAG+AGG 0.543088 1_1:-66760818 Msa0037650:five_prime_UTR
AGAATATAAATCAAGTATCA+GGG 0.544688 1_1:-66758501 Msa0037650:CDS
ACTTATGCTAAGCGGCGACT+AGG 0.544748 1_1:-66760515 Msa0037650:intron
GCAACCACCTACATACTGGA+TGG 0.544849 1_1:-66759074 Msa0037650:CDS
AACTTCCTTCTCCACTGCAA+TGG 0.548849 1_1:+66762305 None:intergenic
CCGCAGTTTGAACAGATGAA+GGG 0.551772 1_1:-66760091 Msa0037650:intron
GGTATCATTTCTCTATGAGA+GGG 0.554274 1_1:-66760817 Msa0037650:five_prime_UTR
ACGAAGTTGAAGCTTAGGAG+TGG 0.558734 1_1:+66762661 None:intergenic
TCGATGGAACTTGAAACAAA+AGG 0.560574 1_1:+66759724 None:intergenic
AAAACCACCCCATACAGAAA+AGG 0.561587 1_1:+66760782 None:intergenic
ACCTGTCAGAAAACATATAC+CGG 0.561836 1_1:-66761619 Msa0037650:five_prime_UTR
CTTTACAACAACACAAGGGG+AGG 0.564491 1_1:+66762798 None:intergenic
GAGATTCGAATTATGATAGG+AGG 0.565361 1_1:-66762743 Msa0037650:five_prime_UTR
TTCCTAAAACCAGTATTAGG+TGG 0.565845 1_1:-66760067 Msa0037650:CDS
ATCACTTCACTTGGAAAAGG+TGG 0.571336 1_1:-66758133 Msa0037650:three_prime_UTR
GTTGCAACAAAGACACCTCC+AGG 0.580734 1_1:+66759092 None:intergenic
AAAAGGCCCATCCAGTATGT+AGG 0.581231 1_1:+66759067 None:intergenic
TTCAACTTTACAACAACACA+AGG 0.582266 1_1:+66762793 None:intergenic
AATATCATCGATGCTAGTTG+TGG 0.584800 1_1:-66760043 Msa0037650:CDS
CTTACAGCTGCTGATGGTGA+AGG 0.590848 1_1:+66759667 None:intergenic
CAACCACCTACATACTGGAT+GGG 0.592989 1_1:-66759073 Msa0037650:CDS
GTCAACGCGTTATAACATAC+AGG 0.595187 1_1:+66762255 None:intergenic
TTGTTGAATCAGGACGCCGC+TGG 0.597878 1_1:-66760838 Msa0037650:intron
GGTGAGAAGAAGAAGCGCGT+GGG 0.603165 1_1:+66762683 None:intergenic
CGAAGTTGAAGCTTAGGAGT+GGG 0.603783 1_1:+66762662 None:intergenic
TATTCACTTACAGCTGCTGA+TGG 0.608738 1_1:+66759661 None:intergenic
TTTACAACAACACAAGGGGA+GGG 0.609390 1_1:+66762799 None:intergenic
ACACACACCTTCAACTTCAA+CGG 0.617297 1_1:-66762828 Msa0037650:five_prime_UTR
CAACTTTACAACAACACAAG+GGG 0.623403 1_1:+66762795 None:intergenic
TGAACTTGAAGCTCTCTGCA+AGG 0.624469 1_1:-66758455 Msa0037650:CDS
GGGTGAGAAGAAGAAGCGCG+TGG 0.624548 1_1:+66762682 None:intergenic
GTATCATTTCTCTATGAGAG+GGG 0.632193 1_1:-66760816 Msa0037650:five_prime_UTR
TCAACTTTACAACAACACAA+GGG 0.640498 1_1:+66762794 None:intergenic
AAAGTAGAAGGGTCAAATGG+AGG 0.641672 1_1:+66758026 None:intergenic
GTGAGAAGAAGAAGCGCGTG+GGG 0.644878 1_1:+66762684 None:intergenic
TAACATACAGGACAAGCCAA+AGG 0.656511 1_1:+66762267 None:intergenic
AGGCCCATCCAGTATGTAGG+TGG 0.662241 1_1:+66759070 None:intergenic
CAACAACTACTTATGCTAAG+CGG 0.675622 1_1:-66760523 Msa0037650:five_prime_UTR
ATTCCTTGACACCAATCCAA+CGG 0.685750 1_1:-66762609 Msa0037650:intron
TCATAGAGAAATGATACCAG+CGG 0.688632 1_1:+66760822 None:intergenic
GTGTTGATCTGTTAAAAGCG+TGG 0.700237 1_1:-66758252 Msa0037650:three_prime_UTR
TGCATGCCTGAAAAGCTCAG+TGG 0.723162 1_1:+66761528 None:intergenic
ACTACTCAGAGAATATGTTG+AGG 0.724151 1_1:-66759958 Msa0037650:CDS
CATGATGTGTGAGAAATGTG+AGG 0.727942 1_1:-66758076 Msa0037650:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATAATTTTGTATAATCAT+GGG + chr1_1:66758366-66758385 None:intergenic 10.0%
!!! ATTATAATTTTGTATAATCA+TGG + chr1_1:66758367-66758386 None:intergenic 10.0%
!!! ATGAATTTATTTTAGTTTAA+AGG - chr1_1:66758855-66758874 Msa0037650:intron 10.0%
!!! TGAATTTATTTTAGTTTAAA+GGG - chr1_1:66758856-66758875 Msa0037650:intron 10.0%
!! ATACAATTAAAGATTAAAAA+GGG + chr1_1:66759360-66759379 None:intergenic 10.0%
!! AATACAATTAAAGATTAAAA+AGG + chr1_1:66759361-66759380 None:intergenic 10.0%
!!! TTTTAATCTTTAATTGTATT+TGG - chr1_1:66759361-66759380 Msa0037650:intron 10.0%
!! AATAATCATTAATTAGTATT+TGG - chr1_1:66761202-66761221 Msa0037650:intron 10.0%
!! TTCAAAAGATATTTAAAAAA+GGG + chr1_1:66761452-66761471 None:intergenic 10.0%
!! TTTCAAAAGATATTTAAAAA+AGG + chr1_1:66761453-66761472 None:intergenic 10.0%
!!! TTTTTAAATATCTTTTGAAA+TGG - chr1_1:66761453-66761472 Msa0037650:intron 10.0%
!! AAAAATAAAATAAAGTAGAA+GGG + chr1_1:66762832-66762851 None:intergenic 10.0%
!! AAAAAATAAAATAAAGTAGA+AGG + chr1_1:66762833-66762852 None:intergenic 10.0%
!! CTCTCAAAAAAATAAAAATT+GGG - chr1_1:66757977-66757996 Msa0037650:three_prime_UTR 15.0%
!!! TCAAAAACTACAATTAATTT+TGG + chr1_1:66758835-66758854 None:intergenic 15.0%
!!! AATTTTGAAATATTCAAACT+TGG - chr1_1:66759073-66759092 Msa0037650:CDS 15.0%
!!! TTTTATTATATCTATGTAAG+TGG + chr1_1:66759839-66759858 None:intergenic 15.0%
!!! ATTCTTGATATTTGTTATAT+AGG - chr1_1:66760254-66760273 Msa0037650:intron 15.0%
!! ATATTAAAATTATCTTGTTG+AGG - chr1_1:66760654-66760673 Msa0037650:intron 15.0%
!!! TTTGAAATATAAACTACTTA+TGG - chr1_1:66761577-66761596 Msa0037650:five_prime_UTR 15.0%
!!! ATTTTTTTCTTATGTATTTG+AGG - chr1_1:66762846-66762865 Msa0037650:five_prime_UTR 15.0%
!!! TTTTTTTTAAGGTTTGATGT+TGG + chr1_1:66757931-66757950 None:intergenic 20.0%
!!! GCTTCTGTTTTTTTTTTTTA+AGG + chr1_1:66757942-66757961 None:intergenic 20.0%
!!! CCAATTTTTATTTTTTTGAG+AGG + chr1_1:66757979-66757998 None:intergenic 20.0%
!! CCTCTCAAAAAAATAAAAAT+TGG - chr1_1:66757976-66757995 Msa0037650:three_prime_UTR 20.0%
!! ATTAATAAGAGATTGTGAAT+TGG + chr1_1:66758281-66758300 None:intergenic 20.0%
!! TCTTAAATTATTATCTGTGT+TGG - chr1_1:66758393-66758412 Msa0037650:CDS 20.0%
!!! TACAAATTTTAAGTTCAAGT+TGG - chr1_1:66758761-66758780 Msa0037650:intron 20.0%
!!! TACAATTAATTTTGGTATGT+AGG + chr1_1:66758827-66758846 None:intergenic 20.0%
!!! AATTGATTTTTCCTTCAAAA+TGG + chr1_1:66759002-66759021 None:intergenic 20.0%
!!! AAAATTGATTTTGACATGTT+TGG + chr1_1:66759039-66759058 None:intergenic 20.0%
!! TAAAAAGGGAAAAAAAGAAA+GGG + chr1_1:66759346-66759365 None:intergenic 20.0%
!! TTAAAAAGGGAAAAAAAGAA+AGG + chr1_1:66759347-66759366 None:intergenic 20.0%
!!! TTTTTTTGAACTATGTATGT+TGG - chr1_1:66759387-66759406 Msa0037650:intron 20.0%
!! AATCATATGCACATATAATT+GGG + chr1_1:66759515-66759534 None:intergenic 20.0%
!!! TTTTTCCAAAAAGAAAATCT+TGG - chr1_1:66759622-66759641 Msa0037650:intron 20.0%
!!! TGTAAATATCTTTTGAAATG+AGG - chr1_1:66761256-66761275 Msa0037650:intron 20.0%
!!! GTAAATATCTTTTGAAATGA+GGG - chr1_1:66761257-66761276 Msa0037650:intron 20.0%
!!! TAAATATCTTTTGAAATGAG+GGG - chr1_1:66761258-66761277 Msa0037650:intron 20.0%
!!! AAATATCTTTTGAAATGGTT+TGG - chr1_1:66761458-66761477 Msa0037650:intron 20.0%
!!! ATATTCTCATGTATTTTCAT+GGG + chr1_1:66761992-66762011 None:intergenic 20.0%
!!! AATATTCTCATGTATTTTCA+TGG + chr1_1:66761993-66762012 None:intergenic 20.0%
!!! TTCTAAAATGACAAACAAAT+TGG + chr1_1:66762327-66762346 None:intergenic 20.0%
!! TAGAATATAAATCAAGTATC+AGG - chr1_1:66762342-66762361 Msa0037650:intron 20.0%
!! AGAATATAAATCAAGTATCA+GGG - chr1_1:66762343-66762362 Msa0037650:intron 20.0%
!! GATTTAAATGCATTAGAAAT+GGG - chr1_1:66762427-66762446 Msa0037650:intron 20.0%
!!! ATGATAATGTCAAGAAATAA+AGG + chr1_1:66762539-66762558 None:intergenic 20.0%
!! TCAAAATAGCATGTTGATTA+AGG - chr1_1:66758493-66758512 Msa0037650:CDS 25.0%
!! ATCAATAAATTTGAGTTTGC+AGG - chr1_1:66758731-66758750 Msa0037650:intron 25.0%
!!! AATTAATTTTGGTATGTAGG+TGG + chr1_1:66758824-66758843 None:intergenic 25.0%
! TTGACTGTAAAAGTTACATT+TGG - chr1_1:66758941-66758960 Msa0037650:intron 25.0%
! TTTATGTTTCTTCATTGGAT+TGG - chr1_1:66759154-66759173 Msa0037650:intron 25.0%
! ATAAGTAATGCTAAGAACTA+TGG - chr1_1:66759276-66759295 Msa0037650:intron 25.0%
! GATACTGATAGAAACTAAAA+AGG - chr1_1:66759411-66759430 Msa0037650:intron 25.0%
!! ATACTTGATTTTGCTTGTAT+TGG + chr1_1:66759446-66759465 None:intergenic 25.0%
! ATCATATGCACATATAATTG+GGG + chr1_1:66759514-66759533 None:intergenic 25.0%
! CAATCATATGCACATATAAT+TGG + chr1_1:66759516-66759535 None:intergenic 25.0%
!!! TGGGTTTTGTTTTTTATTTG+TGG - chr1_1:66759589-66759608 Msa0037650:intron 25.0%
!! TTAGTCCAAGATTTTCTTTT+TGG + chr1_1:66759630-66759649 None:intergenic 25.0%
! AAAAGAAAATCTTGGACTAA+AGG - chr1_1:66759630-66759649 Msa0037650:intron 25.0%
!!! AATCACCACATTATTTTGTA+AGG - chr1_1:66759728-66759747 Msa0037650:CDS 25.0%
! AAACTCCTTACAAAATAATG+TGG + chr1_1:66759736-66759755 None:intergenic 25.0%
!! GGAGTTTGAGAAAAAATTTT+AGG - chr1_1:66759749-66759768 Msa0037650:CDS 25.0%
! TAAAACTGAATATCAAATGC+AGG + chr1_1:66759803-66759822 None:intergenic 25.0%
!!! ACCCACATTTTTTTTCAATA+TGG - chr1_1:66760149-66760168 Msa0037650:intron 25.0%
! GCCATATTGAAAAAAAATGT+GGG + chr1_1:66760153-66760172 None:intergenic 25.0%
! AGCCATATTGAAAAAAAATG+TGG + chr1_1:66760154-66760173 None:intergenic 25.0%
!!! TTTTTCAATATGGCTTCTTA+TGG - chr1_1:66760159-66760178 Msa0037650:intron 25.0%
! TCAAGATTATTTGCAAAAAG+TGG - chr1_1:66760837-66760856 Msa0037650:intron 25.0%
!!! AAAAAGTGGACTTTTTTCTT+TGG - chr1_1:66760851-66760870 Msa0037650:intron 25.0%
!! TAGAAATTTGTGTACTCTTT+TGG + chr1_1:66760948-66760967 None:intergenic 25.0%
! AATAGTTCCATTAAAACATC+GGG + chr1_1:66761006-66761025 None:intergenic 25.0%
! GAATAGTTCCATTAAAACAT+CGG + chr1_1:66761007-66761026 None:intergenic 25.0%
!! TCATAAACATTTCTTTTGCT+AGG - chr1_1:66761061-66761080 Msa0037650:intron 25.0%
! TGGTACAAATAATTTAACCA+TGG - chr1_1:66761478-66761497 Msa0037650:intron 25.0%
! ATTCATTATCGTTAAAAGCA+CGG + chr1_1:66761555-66761574 None:intergenic 25.0%
! GTAACTTATCCTAAATGTTA+CGG + chr1_1:66761610-66761629 None:intergenic 25.0%
! TATAAAACTTGTGCCATATT+TGG - chr1_1:66761834-66761853 Msa0037650:intron 25.0%
!! ATTTTCATGGGTATGTAAAA+TGG + chr1_1:66761980-66761999 None:intergenic 25.0%
! GTATAACTTTGAATCTGAAT+TGG + chr1_1:66762221-66762240 None:intergenic 25.0%
!! CTTTTCATGTTTGACATATA+GGG + chr1_1:66762243-66762262 None:intergenic 25.0%
! CTATATGTCAAACATGAAAA+GGG - chr1_1:66762242-66762261 Msa0037650:five_prime_UTR 25.0%
!!! TCATATCAAGTTTTGAATAG+TGG - chr1_1:66762301-66762320 Msa0037650:five_prime_UTR 25.0%
! GGATTTAAATGCATTAGAAA+TGG - chr1_1:66762426-66762445 Msa0037650:intron 25.0%
AAATTGGGATTGTAAGTAAG+AGG - chr1_1:66757992-66758011 Msa0037650:three_prime_UTR 30.0%
TCAACTTTACAACAACACAA+GGG + chr1_1:66758053-66758072 None:intergenic 30.0%
TTCAACTTTACAACAACACA+AGG + chr1_1:66758054-66758073 None:intergenic 30.0%
TGTTGTTGTAAAGTTGAAGA+AGG - chr1_1:66758056-66758075 Msa0037650:three_prime_UTR 30.0%
CAATATTATTACCGTTGGAT+TGG + chr1_1:66758249-66758268 None:intergenic 30.0%
AGAAGCAATATTATTACCGT+TGG + chr1_1:66758254-66758273 None:intergenic 30.0%
AATAAGAGATTGTGAATTGG+AGG + chr1_1:66758278-66758297 None:intergenic 30.0%
! TTTTGTATAATCATGGGTGT+CGG + chr1_1:66758360-66758379 None:intergenic 30.0%
CTATGTGTATGCTAATATGA+AGG + chr1_1:66758446-66758465 None:intergenic 30.0%
AGGAATGTGATTTCTTGTTA+AGG - chr1_1:66758513-66758532 Msa0037650:intron 30.0%
! CAAGTTAGAATCCATTTTGA+AGG - chr1_1:66758988-66759007 Msa0037650:intron 30.0%
AACCAAACATACACTTAGAT+GGG - chr1_1:66759096-66759115 Msa0037650:CDS 30.0%
!! CTTTTGTTATGCTTGTTAAC+TGG - chr1_1:66759131-66759150 Msa0037650:intron 30.0%
! ACTGGTTTATGTTTCTTCAT+TGG - chr1_1:66759149-66759168 Msa0037650:intron 30.0%
CCATTTAGACTTAACATCAT+TGG + chr1_1:66759549-66759568 None:intergenic 30.0%
CCAATGATGTTAAGTCTAAA+TGG - chr1_1:66759546-66759565 Msa0037650:intron 30.0%
ATATACCATACAGTGTCTAA+TGG - chr1_1:66759569-66759588 Msa0037650:intron 30.0%
TATACCATACAGTGTCTAAT+GGG - chr1_1:66759570-66759589 Msa0037650:intron 30.0%
AAGGTACATTGTATTTGCAA+TGG - chr1_1:66759649-66759668 Msa0037650:intron 30.0%
! TAATGAGTGTTTGTTGAATC+AGG - chr1_1:66759996-66760015 Msa0037650:CDS 30.0%
ATGGCTTCTTATGGATAAAT+TGG - chr1_1:66760168-66760187 Msa0037650:intron 30.0%
TAGGTACATTAAGAGTTTAG+AGG - chr1_1:66760273-66760292 Msa0037650:intron 30.0%
GATAATCAAGACAAACTGAA+AGG + chr1_1:66760510-66760529 None:intergenic 30.0%
AGTTTGTCTTGATTATCGTT+TGG - chr1_1:66760513-66760532 Msa0037650:intron 30.0%
TGAATAGAAGAACATAGACT+TGG - chr1_1:66760540-66760559 Msa0037650:five_prime_UTR 30.0%
! TCTTTAGAAGTATGTATGAC+AGG + chr1_1:66760633-66760652 None:intergenic 30.0%
AATTATCTTGTTGAGGCATA+TGG - chr1_1:66760661-66760680 Msa0037650:intron 30.0%
ATTATCTTGTTGAGGCATAT+GGG - chr1_1:66760662-66760681 Msa0037650:intron 30.0%
AGTCGTTACAATTCATGAAA+AGG + chr1_1:66760709-66760728 None:intergenic 30.0%
ATGATATTTCCACCTAATAC+TGG + chr1_1:66760789-66760808 None:intergenic 30.0%
! ATGTTATGAATTTGTTCAGC+AGG - chr1_1:66760911-66760930 Msa0037650:intron 30.0%
!! TTTTGAACCCGATGTTTTAA+TGG - chr1_1:66760996-66761015 Msa0037650:intron 30.0%
ATATTTAAAAAAGGGCAACC+CGG + chr1_1:66761444-66761463 None:intergenic 30.0%
! CAATACTGCATAAACCTTTT+GGG + chr1_1:66761507-66761526 None:intergenic 30.0%
TGACGCAATGTACTTAAAAA+CGG + chr1_1:66761812-66761831 None:intergenic 30.0%
AACTTACTGAGTTTATCTAC+TGG + chr1_1:66761910-66761929 None:intergenic 30.0%
! TCAATTTAGTTTCTCATCGT+AGG - chr1_1:66762043-66762062 Msa0037650:intron 30.0%
TATTACATACCAAGATTGTG+AGG - chr1_1:66762155-66762174 Msa0037650:intron 30.0%
! CCTTTTCATGTTTGACATAT+AGG + chr1_1:66762244-66762263 None:intergenic 30.0%
CCTATATGTCAAACATGAAA+AGG - chr1_1:66762241-66762260 Msa0037650:five_prime_UTR 30.0%
! AGGAAACTCAAACCTTATTT+CGG + chr1_1:66762480-66762499 None:intergenic 30.0%
TCACTTGGTACATAAAGATA+AGG - chr1_1:66762617-66762636 Msa0037650:five_prime_UTR 30.0%
TATGACATGCAGATAATCTA+AGG + chr1_1:66762678-66762697 None:intergenic 30.0%
ATTATCTGCATGTCATAAGT+TGG - chr1_1:66762681-66762700 Msa0037650:five_prime_UTR 30.0%
TTATCTGCATGTCATAAGTT+GGG - chr1_1:66762682-66762701 Msa0037650:five_prime_UTR 30.0%
AATAAAGTAGAAGGGTCAAA+TGG + chr1_1:66762824-66762843 None:intergenic 30.0%
CAACTTTACAACAACACAAG+GGG + chr1_1:66758052-66758071 None:intergenic 35.0%
!!! AATTCGAATCTCTGGTTTTG+TGG + chr1_1:66758093-66758112 None:intergenic 35.0%
CCTATCATAATTCGAATCTC+TGG + chr1_1:66758101-66758120 None:intergenic 35.0%
CCAGAGATTCGAATTATGAT+AGG - chr1_1:66758098-66758117 Msa0037650:three_prime_UTR 35.0%
GAGATTCGAATTATGATAGG+AGG - chr1_1:66758101-66758120 Msa0037650:three_prime_UTR 35.0%
GTGTATGCTAATATGAAGGA+TGG + chr1_1:66758442-66758461 None:intergenic 35.0%
!! TATGTTATAACGCGTTGACT+TGG - chr1_1:66758593-66758612 Msa0037650:intron 35.0%
CATTGATAAAGCAGGATTAG+TGG + chr1_1:66758620-66758639 None:intergenic 35.0%
CCAACTTACATTGATAAAGC+AGG + chr1_1:66758628-66758647 None:intergenic 35.0%
CCTGCTTTATCAATGTAAGT+TGG - chr1_1:66758625-66758644 Msa0037650:intron 35.0%
GAACCAAACATACACTTAGA+TGG - chr1_1:66759095-66759114 Msa0037650:CDS 35.0%
TGATGCAGAGATACTATTTC+TGG - chr1_1:66759183-66759202 Msa0037650:intron 35.0%
ACCTGTCAGAAAACATATAC+CGG - chr1_1:66759225-66759244 Msa0037650:intron 35.0%
AAAACCCATTAGACACTGTA+TGG + chr1_1:66759577-66759596 None:intergenic 35.0%
TCATAGAGAAATGATACCAG+CGG + chr1_1:66760025-66760044 None:intergenic 35.0%
TGGTATCATTTCTCTATGAG+AGG - chr1_1:66760026-66760045 Msa0037650:CDS 35.0%
GGTATCATTTCTCTATGAGA+GGG - chr1_1:66760027-66760046 Msa0037650:CDS 35.0%
GTATCATTTCTCTATGAGAG+GGG - chr1_1:66760028-66760047 Msa0037650:CDS 35.0%
GTTAGATTAACCTCTTTCTC+AGG + chr1_1:66760094-66760113 None:intergenic 35.0%
AAAATGTGGGTCAAACAAGA+GGG + chr1_1:66760140-66760159 None:intergenic 35.0%
AAAAATGTGGGTCAAACAAG+AGG + chr1_1:66760141-66760160 None:intergenic 35.0%
AATATCCCTACTGAAGAAAG+TGG + chr1_1:66760214-66760233 None:intergenic 35.0%
CAGTAGGGATATTATCCAAT+TGG - chr1_1:66760221-66760240 Msa0037650:intron 35.0%
AGAATCACAGTTCTTCCAAT+TGG + chr1_1:66760239-66760258 None:intergenic 35.0%
CAACAACTACTTATGCTAAG+CGG - chr1_1:66760321-66760340 Msa0037650:intron 35.0%
TATATGAGCTAATTCGTAGC+AGG + chr1_1:66760448-66760467 None:intergenic 35.0%
TTGTCTTGATTATCGTTTGG+CGG - chr1_1:66760516-66760535 Msa0037650:five_prime_UTR 35.0%
GAAGAACATAGACTTGGAAA+TGG - chr1_1:66760546-66760565 Msa0037650:five_prime_UTR 35.0%
GGTTTCCTAAAACCAGTATT+AGG - chr1_1:66760774-66760793 Msa0037650:five_prime_UTR 35.0%
TTCCTAAAACCAGTATTAGG+TGG - chr1_1:66760777-66760796 Msa0037650:five_prime_UTR 35.0%
!!! TTCCACCTAATACTGGTTTT+AGG + chr1_1:66760782-66760801 None:intergenic 35.0%
AATATCATCGATGCTAGTTG+TGG - chr1_1:66760801-66760820 Msa0037650:five_prime_UTR 35.0%
!!! TGGACTTTTTTCTTTGGTTG+TGG - chr1_1:66760857-66760876 Msa0037650:intron 35.0%
ACTACTCAGAGAATATGTTG+AGG - chr1_1:66760886-66760905 Msa0037650:intron 35.0%
! TTTTGCTAGGAACTTCATCT+TGG - chr1_1:66761074-66761093 Msa0037650:intron 35.0%
TCGATGGAACTTGAAACAAA+AGG + chr1_1:66761123-66761142 None:intergenic 35.0%
!!! CTTACCTTGTTTTACACAAG+AGG + chr1_1:66761354-66761373 None:intergenic 35.0%
CTCTTGTGTAAAACAAGGTA+AGG - chr1_1:66761352-66761371 Msa0037650:intron 35.0%
TTTAACCATGGTATCCCAAA+AGG - chr1_1:66761490-66761509 Msa0037650:intron 35.0%
!!! ATAAACCTTTTGGGATACCA+TGG + chr1_1:66761498-66761517 None:intergenic 35.0%
! GCAATACTGCATAAACCTTT+TGG + chr1_1:66761508-66761527 None:intergenic 35.0%
GGAAAGTTACCGTAACATTT+AGG - chr1_1:66761598-66761617 Msa0037650:five_prime_UTR 35.0%
AGTAAGTGAGACAAGCTAAA+CGG + chr1_1:66761672-66761691 None:intergenic 35.0%
TCAGGTCATGGAAATTATAG+AGG + chr1_1:66761697-66761716 None:intergenic 35.0%
TGTACTTAAAAACGGAACAG+CGG + chr1_1:66761804-66761823 None:intergenic 35.0%
!!! GTTTTTAAGTACATTGCGTC+AGG - chr1_1:66761811-66761830 Msa0037650:intron 35.0%
TAACTTTGTCCTTCAGCTAA+AGG - chr1_1:66762076-66762095 Msa0037650:intron 35.0%
!! GTGTTATTTCCTTTAGCTGA+AGG + chr1_1:66762088-66762107 None:intergenic 35.0%
AAAGACAGGTGATATCAGTT+TGG + chr1_1:66762181-66762200 None:intergenic 35.0%
! GAAATAAGGTTTGAGTTTCC+TGG - chr1_1:66762479-66762498 Msa0037650:intron 35.0%
ATCATCACTTCACTTGGAAA+AGG - chr1_1:66762708-66762727 Msa0037650:five_prime_UTR 35.0%
CATTTCTCACACATCATGAA+TGG + chr1_1:66762766-66762785 None:intergenic 35.0%
ACAGAATTGTGATGAGTTCA+TGG + chr1_1:66762883-66762902 None:intergenic 35.0%
ACACACACCTTCAACTTCAA+CGG - chr1_1:66758016-66758035 Msa0037650:three_prime_UTR 40.0%
TTTACAACAACACAAGGGGA+GGG + chr1_1:66758048-66758067 None:intergenic 40.0%
AGAAGACGAAGTTGAAGCTT+AGG + chr1_1:66758191-66758210 None:intergenic 40.0%
ATTCCTTGACACCAATCCAA+CGG - chr1_1:66758235-66758254 Msa0037650:three_prime_UTR 40.0%
! TATTATCTGTGTTGGCGTGT+CGG - chr1_1:66758401-66758420 Msa0037650:CDS 40.0%
TGTTAAGGATTCCATTGCAG+TGG - chr1_1:66758528-66758547 Msa0037650:intron 40.0%
TACTAAGAGCAGCAATCCTT+TGG - chr1_1:66758561-66758580 Msa0037650:intron 40.0%
TAACATACAGGACAAGCCAA+AGG + chr1_1:66758580-66758599 None:intergenic 40.0%
GTCAACGCGTTATAACATAC+AGG + chr1_1:66758592-66758611 None:intergenic 40.0%
CACCCATCTAAGTGTATGTT+TGG + chr1_1:66759101-66759120 None:intergenic 40.0%
CAAACATACACTTAGATGGG+TGG - chr1_1:66759099-66759118 Msa0037650:CDS 40.0%
! ACCGGTATATGTTTTCTGAC+AGG + chr1_1:66759229-66759248 None:intergenic 40.0%
! GCGTCAAACCTTTTCTGTAT+GGG - chr1_1:66760054-66760073 Msa0037650:CDS 40.0%
! CGTCAAACCTTTTCTGTATG+GGG - chr1_1:66760055-66760074 Msa0037650:CDS 40.0%
AAAACCACCCCATACAGAAA+AGG + chr1_1:66760065-66760084 None:intergenic 40.0%
TACCTTCCACTTTCTTCAGT+AGG - chr1_1:66760205-66760224 Msa0037650:intron 40.0%
ACCTTCCACTTTCTTCAGTA+GGG - chr1_1:66760206-66760225 Msa0037650:intron 40.0%
AAACATCCATGAGCTCTGTT+GGG + chr1_1:66760474-66760493 None:intergenic 40.0%
! GTTGAGGCATATGGGTTATT+TGG - chr1_1:66760670-66760689 Msa0037650:intron 40.0%
GTCACTCCTTCTGTTGAATT+CGG - chr1_1:66760730-66760749 Msa0037650:intron 40.0%
! TTTTTCTTTGGTTGTGGCTC+TGG - chr1_1:66760863-66760882 Msa0037650:intron 40.0%
TATTCACTTACAGCTGCTGA+TGG + chr1_1:66761186-66761205 None:intergenic 40.0%
! TTTGAAATGAGGGGTAACCT+TGG - chr1_1:66761267-66761286 Msa0037650:intron 40.0%
GTTGTTGTCATGTGACTGAA+AGG - chr1_1:66761303-66761322 Msa0037650:intron 40.0%
ACAGCCTCTTGTGTAAAACA+AGG - chr1_1:66761347-66761366 Msa0037650:intron 40.0%
CGTACAATACACCAAATGGT+GGG - chr1_1:66761378-66761397 Msa0037650:intron 40.0%
AGGTTTATGCAGTATTGCGT+TGG - chr1_1:66761510-66761529 Msa0037650:intron 40.0%
TTTCCATGACCTGATATTGC+AGG - chr1_1:66761703-66761722 Msa0037650:intron 40.0%
TTTCAGCTACCTGCAATATC+AGG + chr1_1:66761715-66761734 None:intergenic 40.0%
! ATAAGTCGCATTTTACGACC+TGG - chr1_1:66761734-66761753 Msa0037650:intron 40.0%
AAAAACGGAACAGCGGTAAA+AGG + chr1_1:66761797-66761816 None:intergenic 40.0%
TCCAACAAGCATGCCAAATA+TGG + chr1_1:66761850-66761869 None:intergenic 40.0%
GGCTCATTTGTCTAATAGCT+TGG + chr1_1:66761959-66761978 None:intergenic 40.0%
CCACGAATGTGAGAGAAAAT+TGG + chr1_1:66762110-66762129 None:intergenic 40.0%
! CCAATTTTCTCTCACATTCG+TGG - chr1_1:66762107-66762126 Msa0037650:intron 40.0%
ACCTGTCTTTCAAGCAACAA+AGG - chr1_1:66762191-66762210 Msa0037650:intron 40.0%
CCTGTCTTTCAAGCAACAAA+GGG - chr1_1:66762192-66762211 Msa0037650:intron 40.0%
AAGTTCACGTTCAGAGAGAA+AGG + chr1_1:66762376-66762395 None:intergenic 40.0%
GCAGCAGAAATCATCACAAA+AGG + chr1_1:66762453-66762472 None:intergenic 40.0%
! GTGTTGATCTGTTAAAAGCG+TGG - chr1_1:66762592-66762611 Msa0037650:intron 40.0%
! GTTAAAAGCGTGGTTTCACT+TGG - chr1_1:66762602-66762621 Msa0037650:intron 40.0%
ATCACTTCACTTGGAAAAGG+TGG - chr1_1:66762711-66762730 Msa0037650:five_prime_UTR 40.0%
CATGATGTGTGAGAAATGTG+AGG - chr1_1:66762768-66762787 Msa0037650:five_prime_UTR 40.0%
AAAGTAGAAGGGTCAAATGG+AGG + chr1_1:66762821-66762840 None:intergenic 40.0%
TGATGAGTTCATGGAGTTCA+TGG + chr1_1:66762874-66762893 None:intergenic 40.0%
TTACAACAACACAAGGGGAG+GGG + chr1_1:66758047-66758066 None:intergenic 45.0%
CTTTACAACAACACAAGGGG+AGG + chr1_1:66758049-66758068 None:intergenic 45.0%
!!! AATCTCTGGTTTTGTGGCAG+TGG + chr1_1:66758087-66758106 None:intergenic 45.0%
CGAAGTTGAAGCTTAGGAGT+GGG + chr1_1:66758185-66758204 None:intergenic 45.0%
ACGAAGTTGAAGCTTAGGAG+TGG + chr1_1:66758186-66758205 None:intergenic 45.0%
!! TTACCGTTGGATTGGTGTCA+AGG + chr1_1:66758241-66758260 None:intergenic 45.0%
ATGTGTGTCTGGACACTTGT+AGG - chr1_1:66758325-66758344 Msa0037650:intron 45.0%
!! ATAATCATGGGTGTCGGTGT+CGG + chr1_1:66758354-66758373 None:intergenic 45.0%
AACTTCCTTCTCCACTGCAA+TGG + chr1_1:66758542-66758561 None:intergenic 45.0%
TTCAAGATGCGTTTGGTCAC+CGG + chr1_1:66759247-66759266 None:intergenic 45.0%
TCGTGAGTTCAAGATGCGTT+TGG + chr1_1:66759254-66759273 None:intergenic 45.0%
ATTGGGGCAAAGACTCAGTT+CGG + chr1_1:66759498-66759517 None:intergenic 45.0%
ATGGCTGTTGCCAAATACAC+CGG - chr1_1:66759668-66759687 Msa0037650:intron 45.0%
ACTCTTACACTCAACACTGC+CGG + chr1_1:66759690-66759709 None:intergenic 45.0%
! GGCGTCAAACCTTTTCTGTA+TGG - chr1_1:66760053-66760072 Msa0037650:CDS 45.0%
! CAAACCTTTTCTGTATGGGG+TGG - chr1_1:66760058-66760077 Msa0037650:CDS 45.0%
! TTTTCCAGGTCCTGAGAAAG+AGG - chr1_1:66760081-66760100 Msa0037650:exon 45.0%
TTAACCTCTTTCTCAGGACC+TGG + chr1_1:66760088-66760107 None:intergenic 45.0%
TCCCTACTGAAGAAAGTGGA+AGG + chr1_1:66760210-66760229 None:intergenic 45.0%
AACATCCATGAGCTCTGTTG+GGG + chr1_1:66760473-66760492 None:intergenic 45.0%
GAAACATCCATGAGCTCTGT+TGG + chr1_1:66760475-66760494 None:intergenic 45.0%
CCCTTCATCTGTTCAAACTG+CGG + chr1_1:66760756-66760775 None:intergenic 45.0%
CCGCAGTTTGAACAGATGAA+GGG - chr1_1:66760753-66760772 Msa0037650:intron 45.0%
ATCGATGCTAGTTGTGGAAG+TGG - chr1_1:66760807-66760826 Msa0037650:five_prime_UTR 45.0%
TCATGTGACTGAAAGGTCAC+AGG - chr1_1:66761310-66761329 Msa0037650:intron 45.0%
AAGGTCACAGGTTCAAGTCA+TGG - chr1_1:66761322-66761341 Msa0037650:intron 45.0%
GCTGCGTACAATACACCAAA+TGG - chr1_1:66761374-66761393 Msa0037650:intron 45.0%
GCGTACAATACACCAAATGG+TGG - chr1_1:66761377-66761396 Msa0037650:intron 45.0%
CTACCTGCAATATCAGGTCA+TGG + chr1_1:66761709-66761728 None:intergenic 45.0%
TGTTGCAACCACCTACATAC+TGG - chr1_1:66761766-66761785 Msa0037650:intron 45.0%
CAACCACCTACATACTGGAT+GGG - chr1_1:66761771-66761790 Msa0037650:intron 45.0%
AAAAGGCCCATCCAGTATGT+AGG + chr1_1:66761780-66761799 None:intergenic 45.0%
GCCATATTTGGCATGCTTGT+TGG - chr1_1:66761846-66761865 Msa0037650:intron 45.0%
AGCTCTACTTACTCTCACTC+AGG + chr1_1:66761881-66761900 None:intergenic 45.0%
TCAGTTTGGCCTCACAATCT+TGG + chr1_1:66762167-66762186 None:intergenic 45.0%
! CCCTTTGTTGCTTGAAAGAC+AGG + chr1_1:66762195-66762214 None:intergenic 45.0%
TGAACTTGAAGCTCTCTGCA+AGG - chr1_1:66762389-66762408 Msa0037650:intron 45.0%
TCTGCTGCAAAGCCGAAATA+AGG - chr1_1:66762465-66762484 Msa0037650:intron 45.0%
GGGAAGATCATCACTTCACT+TGG - chr1_1:66762702-66762721 Msa0037650:five_prime_UTR 45.0%
TACAACAACACAAGGGGAGG+GGG + chr1_1:66758046-66758065 None:intergenic 50.0%
CACTCCTCATCATGTGTGTC+TGG - chr1_1:66758314-66758333 Msa0037650:intron 50.0%
GTGTCCAGACACACATGATG+AGG + chr1_1:66758321-66758340 None:intergenic 50.0%
GGATTCCATTGCAGTGGAGA+AGG - chr1_1:66758534-66758553 Msa0037650:intron 50.0%
CTGAAAAGCTCAGTGGAAGC+TGG + chr1_1:66759312-66759331 None:intergenic 50.0%
! CAGCTTCCACTGAGCTTTTC+AGG - chr1_1:66759310-66759329 Msa0037650:intron 50.0%
TGCATGCCTGAAAAGCTCAG+TGG + chr1_1:66759319-66759338 None:intergenic 50.0%
CTCAACACTGCCGGTGTATT+TGG + chr1_1:66759681-66759700 None:intergenic 50.0%
CATTTCTCTATGAGAGGGGC+TGG - chr1_1:66760032-66760051 Msa0037650:CDS 50.0%
! TCTGTATGGGGTGGTTTTCC+AGG - chr1_1:66760067-66760086 Msa0037650:CDS 50.0%
TGGGTCAAACAAGAGGGAGT+TGG + chr1_1:66760134-66760153 None:intergenic 50.0%
ACTTATGCTAAGCGGCGACT+AGG - chr1_1:66760329-66760348 Msa0037650:intron 50.0%
ATATGCCCCAACAGAGCTCA+TGG - chr1_1:66760465-66760484 Msa0037650:intron 50.0%
GCCGCAGTTTGAACAGATGA+AGG - chr1_1:66760752-66760771 Msa0037650:intron 50.0%
! CTTACAGCTGCTGATGGTGA+AGG + chr1_1:66761180-66761199 None:intergenic 50.0%
CAACTTTACCAGTTGCGCCA+AGG + chr1_1:66761287-66761306 None:intergenic 50.0%
! AGTCGCATTTTACGACCTGG+AGG - chr1_1:66761737-66761756 Msa0037650:intron 50.0%
GTTGCAACAAAGACACCTCC+AGG + chr1_1:66761755-66761774 None:intergenic 50.0%
GCAACCACCTACATACTGGA+TGG - chr1_1:66761770-66761789 Msa0037650:intron 50.0%
GGGTGGACCGTTGAAGTTGA+AGG + chr1_1:66758026-66758045 None:intergenic 55.0%
! GTGAGAAGAAGAAGCGCGTG+GGG + chr1_1:66758163-66758182 None:intergenic 55.0%
! GGTGAGAAGAAGAAGCGCGT+GGG + chr1_1:66758164-66758183 None:intergenic 55.0%
TTGTTGAATCAGGACGCCGC+TGG - chr1_1:66760006-66760025 Msa0037650:CDS 55.0%
CTGCGGCCGAATTCAACAGA+AGG + chr1_1:66760739-66760758 None:intergenic 55.0%
TCCATCGATGCTGTGCATGC+AGG - chr1_1:66761135-66761154 Msa0037650:intron 55.0%
! TCCTGCATGCACAGCATCGA+TGG + chr1_1:66761139-66761158 None:intergenic 55.0%
CAGGAGCAGCTCTTCACTGT+TGG - chr1_1:66761154-66761173 Msa0037650:intron 55.0%
CTAGAGCTCCCGCATATGCA+GGG + chr1_1:66761417-66761436 None:intergenic 55.0%
ACTAGAGCTCCCGCATATGC+AGG + chr1_1:66761418-66761437 None:intergenic 55.0%
AGGCCCATCCAGTATGTAGG+TGG + chr1_1:66761777-66761796 None:intergenic 55.0%
AAGCTCTCTGCAAGGCGTGT+GGG - chr1_1:66762397-66762416 Msa0037650:intron 55.0%
AACAACACAAGGGGAGGGGG+TGG + chr1_1:66758043-66758062 None:intergenic 60.0%
! GGGTGAGAAGAAGAAGCGCG+TGG + chr1_1:66758165-66758184 None:intergenic 60.0%
GGGGCAAAGACTCAGTTCGG+TGG + chr1_1:66759495-66759514 None:intergenic 60.0%
GCTAAGCGGCGACTAGGTTG+TGG - chr1_1:66760335-66760354 Msa0037650:intron 60.0%
AGGGGTAACCTTGGCGCAAC+TGG - chr1_1:66761276-66761295 Msa0037650:intron 60.0%
CATATGCAGGGTGCGGGAAG+GGG + chr1_1:66761405-66761424 None:intergenic 60.0%
GCATATGCAGGGTGCGGGAA+GGG + chr1_1:66761406-66761425 None:intergenic 60.0%
CTTCCCGCACCCTGCATATG+CGG - chr1_1:66761405-66761424 Msa0037650:intron 60.0%
TTCCCGCACCCTGCATATGC+GGG - chr1_1:66761406-66761425 Msa0037650:intron 60.0%
! ATGCGGGAGCTCTAGTGCAC+CGG - chr1_1:66761422-66761441 Msa0037650:intron 60.0%
GAAGCTCTCTGCAAGGCGTG+TGG - chr1_1:66762396-66762415 Msa0037650:intron 60.0%
CGGGAAGGGGTCCCACCATT+TGG + chr1_1:66761392-66761411 None:intergenic 65.0%
CGCATATGCAGGGTGCGGGA+AGG + chr1_1:66761407-66761426 None:intergenic 65.0%
CTCCCGCATATGCAGGGTGC+GGG + chr1_1:66761411-66761430 None:intergenic 65.0%
GCTCCCGCATATGCAGGGTG+CGG + chr1_1:66761412-66761431 None:intergenic 65.0%
! TGCGGGAGCTCTAGTGCACC+GGG - chr1_1:66761423-66761442 Msa0037650:intron 65.0%
TCTCTGCAAGGCGTGTGGGC+TGG - chr1_1:66762401-66762420 Msa0037650:intron 65.0%
!! AACGCAGCACAGAGAGCGCC+AGG + chr1_1:66762500-66762519 None:intergenic 65.0%
AAGCGCGTGGGGCGCGTGAA+TGG + chr1_1:66758152-66758171 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 66757926 66762940 66757926 ID=Msa0037650;Name=Msa0037650
chr1_1 mRNA 66757926 66762940 66757926 ID=Msa0037650-mRNA-1;Parent=Msa0037650;Name=Msa0037650-mRNA-1;_AED=0.26;_eAED=0.26;_QI=724|1|1|1|0.55|0.7|10|363|181
chr1_1 exon 66757926 66758287 66757926 ID=Msa0037650-mRNA-1:exon:21616;Parent=Msa0037650-mRNA-1
chr1_1 exon 66758380 66758521 66758380 ID=Msa0037650-mRNA-1:exon:21615;Parent=Msa0037650-mRNA-1
chr1_1 exon 66759034 66759141 66759034 ID=Msa0037650-mRNA-1:exon:21614;Parent=Msa0037650-mRNA-1
chr1_1 exon 66759672 66759783 66759672 ID=Msa0037650-mRNA-1:exon:21613;Parent=Msa0037650-mRNA-1
chr1_1 exon 66759914 66760107 66759914 ID=Msa0037650-mRNA-1:exon:21612;Parent=Msa0037650-mRNA-1
chr1_1 exon 66760516 66760590 66760516 ID=Msa0037650-mRNA-1:exon:21611;Parent=Msa0037650-mRNA-1
chr1_1 exon 66760764 66760848 66760764 ID=Msa0037650-mRNA-1:exon:21610;Parent=Msa0037650-mRNA-1
chr1_1 exon 66761535 66761654 66761535 ID=Msa0037650-mRNA-1:exon:21609;Parent=Msa0037650-mRNA-1
chr1_1 exon 66762228 66762331 66762228 ID=Msa0037650-mRNA-1:exon:21608;Parent=Msa0037650-mRNA-1
chr1_1 exon 66762610 66762940 66762610 ID=Msa0037650-mRNA-1:exon:21607;Parent=Msa0037650-mRNA-1
chr1_1 five_prime_UTR 66762610 66762940 66762610 ID=Msa0037650-mRNA-1:five_prime_utr;Parent=Msa0037650-mRNA-1
chr1_1 five_prime_UTR 66762228 66762331 66762228 ID=Msa0037650-mRNA-1:five_prime_utr;Parent=Msa0037650-mRNA-1
chr1_1 five_prime_UTR 66761535 66761654 66761535 ID=Msa0037650-mRNA-1:five_prime_utr;Parent=Msa0037650-mRNA-1
chr1_1 five_prime_UTR 66760764 66760848 66760764 ID=Msa0037650-mRNA-1:five_prime_utr;Parent=Msa0037650-mRNA-1
chr1_1 five_prime_UTR 66760516 66760590 66760516 ID=Msa0037650-mRNA-1:five_prime_utr;Parent=Msa0037650-mRNA-1
chr1_1 five_prime_UTR 66760099 66760107 66760099 ID=Msa0037650-mRNA-1:five_prime_utr;Parent=Msa0037650-mRNA-1
chr1_1 CDS 66759914 66760098 66759914 ID=Msa0037650-mRNA-1:cds;Parent=Msa0037650-mRNA-1
chr1_1 CDS 66759672 66759783 66759672 ID=Msa0037650-mRNA-1:cds;Parent=Msa0037650-mRNA-1
chr1_1 CDS 66759034 66759141 66759034 ID=Msa0037650-mRNA-1:cds;Parent=Msa0037650-mRNA-1
chr1_1 CDS 66758381 66758521 66758381 ID=Msa0037650-mRNA-1:cds;Parent=Msa0037650-mRNA-1
chr1_1 three_prime_UTR 66758380 66758380 66758380 ID=Msa0037650-mRNA-1:three_prime_utr;Parent=Msa0037650-mRNA-1
chr1_1 three_prime_UTR 66757926 66758287 66757926 ID=Msa0037650-mRNA-1:three_prime_utr;Parent=Msa0037650-mRNA-1
Gene Sequence

>Msa0037650

ATGAAGGGTTTCCTAAAACCAGTATTAGGTGGAAATATCATCGATGCTAGTTGTGGAAGTGGATTATTTTCAAGATTATTTGCAAAAAGTGGACTTTTTTCTTTGGTTGTGGCTCTGGACTACTCAGAGAATATGTTGAGGCAATGTTATGAATTTGTTCAGCAGGAAGATAACTTTCCAAAAGAGAACTTCATCTTGGTTAGAGCAGACATAGCTAGACTTCCTTTTGTTTCAAGTTCCATCGATGCTGTGCATGCAGGAGCAGCTCTTCACTGTTGGCCTTCACCATCAGCAGCTGTAGCTGAAATAAGTCGCATTTTACGACCTGGAGGTGTCTTTGTTGCAACCACCTACATACTGGATGGGCCTTTTACCGCTGTTCCGTTTTTAAGTACATTGCGTCAGAATATAAATCAAGTATCAGGGATCTATACCTTTCTCTCTGAACGTGAACTTGAAGCTCTCTGCAAGGCGTGTGGGCTGGTCGGATTTAAATGCATTAGAAATGGGCCTTTTGTGATGATTTCTGCTGCAAAGCCGAAATAA

Protein sequence

>Msa0037650

MKGFLKPVLGGNIIDASCGSGLFSRLFAKSGLFSLVVALDYSENMLRQCYEFVQQEDNFPKENFILVRADIARLPFVSSSIDAVHAGAALHCWPSPSAAVAEISRILRPGGVFVATTYILDGPFTAVPFLSTLRQNINQVSGIYTFLSERELEALCKACGLVGFKCIRNGPFVMISAAKPK*