AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0701800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0701800 MtrunA17_Chr8g0380251 95.200 375 16 1 1 375 1 373 0.0 729
Msa0701800 MtrunA17_Chr1g0186021 32.157 255 161 6 100 347 121 370 4.78e-35 135
Msa0701800 MtrunA17_Chr1g0173891 30.242 248 159 5 137 375 13 255 3.19e-33 127
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0701800 AT5G46390.1 61.318 349 116 3 42 373 49 395 1.41e-148 427
Msa0701800 AT5G46390.2 61.254 351 117 3 42 375 49 397 5.72e-148 428
Msa0701800 AT3G57680.1 26.744 344 221 7 42 375 79 401 5.05e-33 129
Msa0701800 AT4G17740.1 31.373 255 163 6 100 347 133 382 7.13e-33 129
Msa0701800 AT4G17740.2 31.373 255 163 6 100 347 123 372 9.95e-33 129
Msa0701800 AT3G57680.3 28.514 249 165 5 137 375 7 252 6.11e-28 113
Msa0701800 AT3G57680.2 28.514 249 165 5 137 375 7 252 6.11e-28 113

Find 154 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTATACCTGGAAGTTTC+TGG 0.170732 4_4:+73270846 None:intergenic
CATGCAGGAGTTCGTATTTA+AGG 0.185407 4_4:-73270299 Msa0701800:three_prime_UTR
ACATGACATTGTCAAATTAT+TGG 0.192213 4_4:-73270103 Msa0701800:three_prime_UTR
CGGAACATCTGTGACTATTC+AGG 0.254157 4_4:-73273059 Msa0701800:intron
GAAAGCTTAGTGGGAATAAT+TGG 0.279646 4_4:+73274906 None:intergenic
GAAGGTATTGGGATTAATAT+TGG 0.289827 4_4:-73273442 Msa0701800:CDS
TGCGGATTCTTTACCCTTGC+TGG 0.291686 4_4:+73270413 None:intergenic
TTCCGTTAGGGCCTTGCAAC+AGG 0.291802 4_4:+73273077 None:intergenic
AAACAACAGCTTGCTGGAAC+TGG 0.294485 4_4:+73271511 None:intergenic
AAGAGAGGAGATTAGGAAAT+CGG 0.296703 4_4:+73271386 None:intergenic
GTTAATAACACAGAGGTAAA+TGG 0.308388 4_4:-73273124 Msa0701800:CDS
AATGATGACTTTCTTGATAC+TGG 0.317286 4_4:-73274666 Msa0701800:CDS
CCAAAGCACAAGGACATAAA+TGG 0.324637 4_4:-73270890 Msa0701800:three_prime_UTR
AAGCTTTGCAATTTCAATTC+CGG 0.328383 4_4:+73272159 None:intergenic
TTACCGTGTCTCCTTCGTTT+AGG 0.341822 4_4:+73272134 None:intergenic
GAAAGTGGTGCTGCTCATAT+TGG 0.341972 4_4:-73272847 Msa0701800:CDS
GGTGAAAGAAAACGTGTATA+AGG 0.347877 4_4:+73274088 None:intergenic
CAAGCGAATGCTGACCAGTT+TGG 0.349414 4_4:-73274116 Msa0701800:CDS
CCTGACTTCCAGAAACTTCC+AGG 0.357007 4_4:-73270854 Msa0701800:intron
AGGGAAGTTACGGATGAAAA+TGG 0.361071 4_4:-73273477 Msa0701800:CDS
CTCAACATCACGGCATGTTT+CGG 0.366378 4_4:+73274767 None:intergenic
CCATTTATGTCCTTGTGCTT+TGG 0.367073 4_4:+73270890 None:intergenic
AAGCGAATGCTGACCAGTTT+GGG 0.376696 4_4:-73274115 Msa0701800:CDS
CTGGTATTGGAATAAACCTT+AGG 0.384790 4_4:-73273497 Msa0701800:CDS
CTTGCAACTACACTCTCCTT+TGG 0.384978 4_4:-73274867 Msa0701800:CDS
AGAGAGGAGATTAGGAAATC+GGG 0.386696 4_4:+73271387 None:intergenic
GACCATAGGCTGAAGGTATT+GGG 0.393402 4_4:-73273453 Msa0701800:CDS
TGAACTTCAATTGATTCAAC+AGG 0.393542 4_4:+73272919 None:intergenic
AGACCATAGGCTGAAGGTAT+TGG 0.393937 4_4:-73273454 Msa0701800:CDS
TGCCTTTGACCTTGTCTGAA+TGG 0.396329 4_4:+73274150 None:intergenic
TACCAATGAAGGACTTGTTC+AGG 0.398498 4_4:-73274706 Msa0701800:CDS
GAGGAAGTAGAGAGAGGGAT+TGG 0.399045 4_4:+73274789 None:intergenic
TATCCGAAACAACAGCTTGC+TGG 0.404299 4_4:+73271505 None:intergenic
TACAGTATGTCGTTGTTTAG+TGG 0.410190 4_4:-73271310 Msa0701800:three_prime_UTR
TCATGTATTCATATATCAAT+AGG 0.413227 4_4:+73270120 None:intergenic
TAGTAATACTTAACTAATAT+AGG 0.420478 4_4:-73270245 Msa0701800:three_prime_UTR
TTCCTGAACAAGTCCTTCAT+TGG 0.422208 4_4:+73274704 None:intergenic
CTTGAAGCTCAAATACAGAT+TGG 0.425182 4_4:+73270954 None:intergenic
GTTCCAGCAAGCTGTTGTTT+CGG 0.436242 4_4:-73271508 Msa0701800:CDS
CTGGTGTGGTTATAACTGTT+GGG 0.440327 4_4:-73270925 Msa0701800:three_prime_UTR
GACGGTCCTGCTCATTCTGC+TGG 0.446334 4_4:-73273420 Msa0701800:CDS
TGGTCGCAACCGTTGGTCTC+AGG 0.446965 4_4:-73274646 Msa0701800:CDS
CCTGGAAGTTTCTGGAAGTC+AGG 0.447399 4_4:+73270854 None:intergenic
TGCTTCTGGTCTTCCAGCAA+GGG 0.449334 4_4:-73270426 Msa0701800:three_prime_UTR
CCAATGCATTGAACTCTTTG+AGG 0.452389 4_4:+73272815 None:intergenic
TCTGGTGTGGTTATAACTGT+TGG 0.453331 4_4:-73270926 Msa0701800:three_prime_UTR
CATGTCATACCTCGCCATCT+TGG 0.454892 4_4:+73273521 None:intergenic
GTAGAGAGAGGGATTGGAAG+AGG 0.456800 4_4:+73274795 None:intergenic
CCTTCATTGGTAACAACCTC+AGG 0.460247 4_4:+73274717 None:intergenic
TGAAGTTCAGCGGCAATTTG+TGG 0.460683 4_4:-73272905 Msa0701800:CDS
AAGTTGCTTCAGTTATGCTC+TGG 0.460865 4_4:+73270274 None:intergenic
TGAAGAGCAGATGCAGAAGA+AGG 0.463218 4_4:+73274825 None:intergenic
AACAACAGCTTGCTGGAACT+GGG 0.463806 4_4:+73271512 None:intergenic
AAAGTGGTGCTGCTCATATT+GGG 0.464184 4_4:-73272846 Msa0701800:CDS
CACTTTCAGTTTGTTCCATA+CGG 0.469501 4_4:+73272863 None:intergenic
TTGCTTCTGGTCTTCCAGCA+AGG 0.470311 4_4:-73270427 Msa0701800:three_prime_UTR
AGGTATGACATGACTGGTAT+TGG 0.470655 4_4:-73273510 Msa0701800:CDS
ATCCCAATACCTTCAGCCTA+TGG 0.471410 4_4:+73273451 None:intergenic
TTGGATCTTAGAGATAATCT+TGG 0.473432 4_4:-73272657 Msa0701800:CDS
CTCGTTGGAAAACGCACGTA+TGG 0.473888 4_4:-73271073 Msa0701800:three_prime_UTR
TGTATAAGGATCGCCCAAAC+TGG 0.475811 4_4:+73274102 None:intergenic
ACAACAGCTTGCTGGAACTG+GGG 0.481816 4_4:+73271513 None:intergenic
AATAAACCTTAGGGAAGTTA+CGG 0.481828 4_4:-73273487 Msa0701800:CDS
TGGGGTGTTGAAAGTATTGT+TGG 0.482845 4_4:+73274951 None:intergenic
GATGAAGATGATGATGATGA+TGG 0.483123 4_4:+73274931 None:intergenic
AGCAGATGCAGAAGAAGGGA+AGG 0.488126 4_4:+73274830 None:intergenic
ATAGTCACAGATGTTCCGTT+AGG 0.490282 4_4:+73273064 None:intergenic
AAGGACTTGTTCAGGAAGCT+TGG 0.491839 4_4:-73274698 Msa0701800:CDS
CCTGAGGTTGTTACCAATGA+AGG 0.492506 4_4:-73274717 Msa0701800:CDS
TTGATACTGGTCGCAACCGT+TGG 0.494736 4_4:-73274653 Msa0701800:CDS
AAGATCCAATACAAAATATG+AGG 0.497184 4_4:+73272671 None:intergenic
TCTGTATTTGAGCTTCAAGA+TGG 0.497337 4_4:-73270950 Msa0701800:three_prime_UTR
TTGCAAGGAGGGTGTTGTGA+AGG 0.501563 4_4:+73274883 None:intergenic
TCATTCTGCTGGTGTCAGAC+AGG 0.502702 4_4:-73273409 Msa0701800:intron
TGATAGGTCATCTACACTGC+TGG 0.503687 4_4:-73271543 Msa0701800:intron
ATGAGATGAATGAGAGGCTA+TGG 0.504700 4_4:-73275196 Msa0701800:five_prime_UTR
TTTGAGCTTCAAGATGGGTC+TGG 0.505669 4_4:-73270944 Msa0701800:three_prime_UTR
TAATCTTGGTGGGCTAGTGC+AGG 0.505943 4_4:-73272643 Msa0701800:intron
TGCAAGGAGGGTGTTGTGAA+GGG 0.514883 4_4:+73274884 None:intergenic
ATAGACACATAACACAAGAT+TGG 0.515667 4_4:-73270345 Msa0701800:three_prime_UTR
GAGAGAGGGATTGGAAGAGG+AGG 0.520963 4_4:+73274798 None:intergenic
TGGTATTGGAATAAACCTTA+GGG 0.523685 4_4:-73273496 Msa0701800:CDS
AGAGCATAACTGAAGCAACT+TGG 0.524493 4_4:-73270272 Msa0701800:three_prime_UTR
TGTTGAAAGTATTGTTGGAG+TGG 0.527937 4_4:+73274956 None:intergenic
GAAGAATGGATTACCTCCTC+AGG 0.528232 4_4:+73274067 None:intergenic
TTGTGAAGGGAAAGCTTAGT+GGG 0.528461 4_4:+73274897 None:intergenic
GTTGTGAAGGGAAAGCTTAG+TGG 0.530687 4_4:+73274896 None:intergenic
TGTTCCATACGGTAAGAGAC+TGG 0.531186 4_4:+73272874 None:intergenic
AGGGTAAAGAATCCGCATGC+TGG 0.531498 4_4:-73270407 Msa0701800:three_prime_UTR
GCTCGAAAAGATTTAGTCAT+CGG 0.531541 4_4:-73272793 Msa0701800:intron
ACCGTTGGTCTCAGGATACC+TGG 0.531650 4_4:-73274638 Msa0701800:CDS
GGAGAGTGTAGTTGCAAGGA+GGG 0.531892 4_4:+73274872 None:intergenic
ACAAGAGGAGCACGGATCAA+TGG 0.532220 4_4:+73271477 None:intergenic
CAAGGATAAAACAGTTTCTA+CGG 0.535630 4_4:-73270469 Msa0701800:three_prime_UTR
GATCTTAGAGATAATCTTGG+TGG 0.537887 4_4:-73272654 Msa0701800:CDS
TTTCATCCGTAACTTCCCTA+AGG 0.542168 4_4:+73273481 None:intergenic
CAGATGCAGAAGAAGGGAAG+GGG 0.543799 4_4:+73274832 None:intergenic
CCTCAAAGAGTTCAATGCAT+TGG 0.545821 4_4:-73272815 Msa0701800:CDS
CCTCACTATTTCACTAGCAC+TGG 0.547376 4_4:+73271212 None:intergenic
TAGTCACAGATGTTCCGTTA+GGG 0.547770 4_4:+73273065 None:intergenic
GGAGTGGTGGAGAGTGATGA+AGG 0.547929 4_4:+73274972 None:intergenic
ATCTTAGAGATAATCTTGGT+GGG 0.549550 4_4:-73272653 Msa0701800:CDS
CACAGTTCCAACTGCTCCTG+AGG 0.549791 4_4:-73274733 Msa0701800:CDS
AATTGTCGAGCTGTTCTCGT+TGG 0.550446 4_4:-73271088 Msa0701800:three_prime_UTR
CGTATGGAACAAACTGAAAG+TGG 0.551046 4_4:-73272862 Msa0701800:CDS
AGATGCAGAAGAAGGGAAGG+GGG 0.555276 4_4:+73274833 None:intergenic
CACACCAGTCTCTTACCGTA+TGG 0.556124 4_4:-73272878 Msa0701800:CDS
AGCTCAAGCATGGAAACTGT+GGG 0.565529 4_4:-73272942 Msa0701800:CDS
CGTTGTTGTCAGCTCAAGCA+TGG 0.565807 4_4:-73272952 Msa0701800:intron
TCCCTGTTGCAAGGCCCTAA+CGG 0.566724 4_4:-73273079 Msa0701800:CDS
TGGAAAACGCACGTATGGCA+AGG 0.572643 4_4:-73271068 Msa0701800:intron
CTGTATTTGAGCTTCAAGAT+GGG 0.577139 4_4:-73270949 Msa0701800:three_prime_UTR
GCAGATGCAGAAGAAGGGAA+GGG 0.577572 4_4:+73274831 None:intergenic
GTAACAACCTCAGGAGCAGT+TGG 0.578338 4_4:+73274726 None:intergenic
CAGCTCAAGCATGGAAACTG+TGG 0.578820 4_4:-73272943 Msa0701800:CDS
ACACATAACACAAGATTGGT+AGG 0.581055 4_4:-73270341 Msa0701800:three_prime_UTR
GAACATTGATGATACCTGCC+AGG 0.586445 4_4:+73274620 None:intergenic
GAAGTATCATCCCTGTTGCA+AGG 0.589347 4_4:-73273088 Msa0701800:CDS
TAACTAGATTAAATTAAACT+CGG 0.590035 4_4:-73275122 Msa0701800:five_prime_UTR
ATACTTAACTAATATAGGAA+AGG 0.590073 4_4:-73270240 Msa0701800:three_prime_UTR
TGAAAGTATTGTTGGAGTGG+TGG 0.590643 4_4:+73274959 None:intergenic
TTCCATTCAGACAAGGTCAA+AGG 0.593150 4_4:-73274152 Msa0701800:CDS
GAAGAGCAGATGCAGAAGAA+GGG 0.595058 4_4:+73274826 None:intergenic
TTGGTCTCAGGATACCTGGC+AGG 0.596168 4_4:-73274634 Msa0701800:intron
CAAAGGAGAGTGTAGTTGCA+AGG 0.596188 4_4:+73274868 None:intergenic
AGTAATCTAAGAAAGCATGC+AGG 0.596941 4_4:-73270314 Msa0701800:three_prime_UTR
CAACAGCTTGCTGGAACTGG+GGG 0.597395 4_4:+73271514 None:intergenic
CTGACACCAGCAGAATGAGC+AGG 0.598327 4_4:+73273414 None:intergenic
GTATTGGGATTAATATTGGA+CGG 0.602411 4_4:-73273438 Msa0701800:CDS
ATGGCGAGGTATGACATGAC+TGG 0.602836 4_4:-73273516 Msa0701800:CDS
TTTCGGAGGAAGTAGAGAGA+GGG 0.615323 4_4:+73274784 None:intergenic
TTGAATCAATTGAAGTTCAG+CGG 0.615959 4_4:-73272915 Msa0701800:CDS
AACATCACGGCATGTTTCGG+AGG 0.617397 4_4:+73274770 None:intergenic
ATGCATTGAACTCTTTGAGG+CGG 0.622366 4_4:+73272818 None:intergenic
CACAAGGACATAAATGGCAA+CGG 0.622455 4_4:-73270884 Msa0701800:three_prime_UTR
TCCGTTAGGGCCTTGCAACA+GGG 0.624845 4_4:+73273078 None:intergenic
AAAAGTTCTCCAAGATGGCG+AGG 0.627849 4_4:-73273530 Msa0701800:intron
GTTTCGGAGGAAGTAGAGAG+AGG 0.629848 4_4:+73274783 None:intergenic
TTTCCTAAACGAAGGAGACA+CGG 0.632678 4_4:-73272137 Msa0701800:intron
ACATGGCAGCTTCCAGCATG+CGG 0.635420 4_4:+73270395 None:intergenic
AAATGGAGACCATAGGCTGA+AGG 0.637284 4_4:-73273460 Msa0701800:CDS
GCTTCAAGATGGGTCTGGTG+TGG 0.637950 4_4:-73270939 Msa0701800:three_prime_UTR
TGAGCAATTCCATTCAGACA+AGG 0.642285 4_4:-73274159 Msa0701800:CDS
AATGAAGCGACTTCAAGACA+TGG 0.646610 4_4:-73272697 Msa0701800:CDS
GTATGTAACACCAAAGCACA+AGG 0.647978 4_4:-73270900 Msa0701800:three_prime_UTR
AGGAGAGTGTAGTTGCAAGG+AGG 0.651687 4_4:+73274871 None:intergenic
AAATGCAGTATGCTTCAGCA+AGG 0.653675 4_4:-73270487 Msa0701800:three_prime_UTR
GCAGTAATGAGATGAATGAG+AGG 0.659301 4_4:-73275202 Msa0701800:five_prime_UTR
CGGATGAAAATGGAGACCAT+AGG 0.660391 4_4:-73273467 Msa0701800:CDS
GCCAGGTATCCTGAGACCAA+CGG 0.663215 4_4:+73274637 None:intergenic
TATCTCGAAGCTCAACATCA+CGG 0.666685 4_4:+73274757 None:intergenic
ATGAAGCGACTTCAAGACAT+GGG 0.671799 4_4:-73272696 Msa0701800:CDS
GCAGAAAGAAGATGAATGTG+TGG 0.715352 4_4:-73275001 Msa0701800:exon
ATTGGCAGTTAATAACACAG+AGG 0.766028 4_4:-73273131 Msa0701800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATGAATTTTTATTATGT+GGG - chr4_4:73270784-73270803 Msa0701800:intron 10.0%
!! AAAAATGAAAAAAATAAAAG+AGG + chr4_4:73275165-73275184 None:intergenic 10.0%
!! TAACTAGATTAAATTAAACT+CGG - chr4_4:73270212-73270231 Msa0701800:three_prime_UTR 15.0%
!!! AAAATGTAAAATTTTGATGT+GGG + chr4_4:73270741-73270760 None:intergenic 15.0%
!!! AAAAATGTAAAATTTTGATG+TGG + chr4_4:73270742-73270761 None:intergenic 15.0%
!! CATAATAAAAATTCATAAAC+TGG + chr4_4:73270783-73270802 None:intergenic 15.0%
!!! GTTTATGAATTTTTATTATG+TGG - chr4_4:73270783-73270802 Msa0701800:intron 15.0%
!! CTGAAAACAAAAAATTATTA+GGG + chr4_4:73272009-73272028 None:intergenic 15.0%
!! ACTGAAAACAAAAAATTATT+AGG + chr4_4:73272010-73272029 None:intergenic 15.0%
!! ATACAATTATATTAACATCA+GGG + chr4_4:73272037-73272056 None:intergenic 15.0%
!! AATACAATTATATTAACATC+AGG + chr4_4:73272038-73272057 None:intergenic 15.0%
!!! ACTATATGTTTTAACATTTT+CGG - chr4_4:73272070-73272089 Msa0701800:intron 15.0%
!! ATAATAGAGTATATTAATTC+TGG - chr4_4:73273552-73273571 Msa0701800:intron 15.0%
!! TAATAGAGTATATTAATTCT+GGG - chr4_4:73273553-73273572 Msa0701800:intron 15.0%
!!! TAATTTTTCTCTTTGTAAAA+TGG - chr4_4:73274293-73274312 Msa0701800:intron 15.0%
!!! AAATTTTTGAGATATATACA+TGG + chr4_4:73274959-73274978 None:intergenic 15.0%
!! TAGTAATACTTAACTAATAT+AGG - chr4_4:73275089-73275108 Msa0701800:five_prime_UTR 15.0%
!!! AATTTTTATTATGTGGGTTT+TGG - chr4_4:73270790-73270809 Msa0701800:intron 20.0%
!! CACTTTATAATTCATATTGA+AGG - chr4_4:73270911-73270930 Msa0701800:three_prime_UTR 20.0%
!!! TTTTATTTGTTTCTTGGTTA+GGG - chr4_4:73272171-73272190 Msa0701800:intron 20.0%
!! TTAACGTTCATGTTTAATAT+TGG - chr4_4:73272356-73272375 Msa0701800:intron 20.0%
!! TTCGTTATATGAAAAAGAAA+AGG + chr4_4:73272922-73272941 None:intergenic 20.0%
!! TACATTGTGTAAAACATTAT+TGG - chr4_4:73273268-73273287 Msa0701800:intron 20.0%
!! ATTGAAGACAATAAAATTCA+AGG + chr4_4:73273387-73273406 None:intergenic 20.0%
!! TATTTATGTTAGACATTTAC+TGG - chr4_4:73273473-73273492 Msa0701800:CDS 20.0%
!! TGATATATTCGATTAAATGT+TGG - chr4_4:73273639-73273658 Msa0701800:intron 20.0%
!!! GTTGATTTCTTTTTTACTAT+AGG - chr4_4:73273661-73273680 Msa0701800:intron 20.0%
!! TGTAAAAAAAATTCAGATGT+AGG + chr4_4:73273896-73273915 None:intergenic 20.0%
!!! TGATTGATTATTTTCTTTCA+GGG - chr4_4:73274351-73274370 Msa0701800:intron 20.0%
!! TAAAAAAACACAATTATACC+TGG + chr4_4:73274501-73274520 None:intergenic 20.0%
!! ACGACAATAATTTGAAAAAA+TGG - chr4_4:73274633-73274652 Msa0701800:intron 20.0%
!! ATACTTAACTAATATAGGAA+AGG - chr4_4:73275094-73275113 Msa0701800:five_prime_UTR 20.0%
!! CTACATAAAAATGTAAAACA+AGG + chr4_4:73275123-73275142 None:intergenic 20.0%
!! ATGAAAAAAATAAAAGAGGA+AGG + chr4_4:73275161-73275180 None:intergenic 20.0%
!! TCATGTATTCATATATCAAT+AGG + chr4_4:73275217-73275236 Msa0701810:five_prime_UTR 20.0%
!!! CTTTAAGTTGGTAAAGTAAT+GGG + chr4_4:73270835-73270854 None:intergenic 25.0%
!!! ACTTTAAGTTGGTAAAGTAA+TGG + chr4_4:73270836-73270855 None:intergenic 25.0%
! CACTATTGAAAATTGAAGAA+TGG + chr4_4:73271284-73271303 None:intergenic 25.0%
! ATTAGATGTTTATGCCTTAT+GGG - chr4_4:73271332-73271351 Msa0701800:three_prime_UTR 25.0%
! AAAAAAATTCATCTGCATTG+CGG - chr4_4:73271430-73271449 Msa0701800:CDS 25.0%
! TAGATGTCTCATGATAATAT+AGG + chr4_4:73271616-73271635 None:intergenic 25.0%
! GTTTCTTACTTAATGGTATA+TGG - chr4_4:73271765-73271784 Msa0701800:intron 25.0%
!!! TGTTTTAACATTTTCGGTAT+AGG - chr4_4:73272076-73272095 Msa0701800:intron 25.0%
!!! TCTTGCTTTTATTTGTTTCT+TGG - chr4_4:73272165-73272184 Msa0701800:intron 25.0%
!!! CTTTTATTTGTTTCTTGGTT+AGG - chr4_4:73272170-73272189 Msa0701800:intron 25.0%
!! TTTATTTGTTTCTTGGTTAG+GGG - chr4_4:73272172-73272191 Msa0701800:intron 25.0%
! CGTTAAAAAACTAAAAGCAA+AGG + chr4_4:73272342-73272361 None:intergenic 25.0%
!!! TCTTTGTTTTTGCTTTCTTA+CGG - chr4_4:73272585-73272604 Msa0701800:intron 25.0%
! AAGATCCAATACAAAATATG+AGG + chr4_4:73272666-73272685 None:intergenic 25.0%
! AAAATGAAGATAAACGCATA+AGG - chr4_4:73272808-73272827 Msa0701800:CDS 25.0%
! GAAAAGGAAAAAGAAAAGAT+GGG + chr4_4:73272906-73272925 None:intergenic 25.0%
! AGAAAAGGAAAAAGAAAAGA+TGG + chr4_4:73272907-73272926 None:intergenic 25.0%
!! AATTGAAGAAATACTGACTA+TGG + chr4_4:73272999-73273018 None:intergenic 25.0%
!! TTTTCCTTAAAATGTGATGT+TGG - chr4_4:73273342-73273361 Msa0701800:intron 25.0%
! CATTTCTCCACTAATAATAT+TGG - chr4_4:73273421-73273440 Msa0701800:CDS 25.0%
! CATTCAAATAAGAAAAAGAG+AGG + chr4_4:73273966-73273985 None:intergenic 25.0%
! GTTCATGTTATACTTATTTC+AGG - chr4_4:73274203-73274222 Msa0701800:intron 25.0%
!! CTGATTGATTATTTTCTTTC+AGG - chr4_4:73274350-73274369 Msa0701800:intron 25.0%
! TTCACAGTCAAATTGTAATA+TGG - chr4_4:73274762-73274781 Msa0701800:CDS 25.0%
! ACATGACATTGTCAAATTAT+TGG - chr4_4:73275231-73275250 Msa0701800:five_prime_UTR 25.0%
TAGTTATCAGCAAAAAATGC+TGG + chr4_4:73270198-73270217 None:intergenic 30.0%
! ATGAAGATGATGATGATGAT+GGG + chr4_4:73270405-73270424 None:intergenic 30.0%
AATGATGACTTTCTTGATAC+TGG - chr4_4:73270668-73270687 Msa0701800:intron 30.0%
TAAAGCAGCAAACTTTAAGT+TGG + chr4_4:73270847-73270866 None:intergenic 30.0%
ATGTGATTATGTCTATGTGT+CGG - chr4_4:73271009-73271028 Msa0701800:intron 30.0%
!!! TCATTGATGTTGTTTTTGTG+TGG - chr4_4:73271096-73271115 Msa0701800:three_prime_UTR 30.0%
CATTAGATGTTTATGCCTTA+TGG - chr4_4:73271331-73271350 Msa0701800:three_prime_UTR 30.0%
AACACTGTCATATACAACTA+AGG - chr4_4:73271399-73271418 Msa0701800:three_prime_UTR 30.0%
GCAAAACAAGCAATAGTAAA+TGG + chr4_4:73271683-73271702 None:intergenic 30.0%
TTCTCGTGTTTCTTACTTAA+TGG - chr4_4:73271758-73271777 Msa0701800:intron 30.0%
!! CTTTTAAAAGTTCTCCAAGA+TGG - chr4_4:73271799-73271818 Msa0701800:intron 30.0%
! TGGTATTGGAATAAACCTTA+GGG - chr4_4:73271838-73271857 Msa0701800:intron 30.0%
AATAAACCTTAGGGAAGTTA+CGG - chr4_4:73271847-73271866 Msa0701800:intron 30.0%
!! GAAGGTATTGGGATTAATAT+TGG - chr4_4:73271892-73271911 Msa0701800:intron 30.0%
GTATTGGGATTAATATTGGA+CGG - chr4_4:73271896-73271915 Msa0701800:intron 30.0%
!! GAAGATTTTTGAAAATGAGC+AGG + chr4_4:73272136-73272155 None:intergenic 30.0%
! TTATTTGTTTCTTGGTTAGG+GGG - chr4_4:73272173-73272192 Msa0701800:intron 30.0%
GTTAATAACACAGAGGTAAA+TGG - chr4_4:73272210-73272229 Msa0701800:intron 30.0%
ATTCTGATTCCAAGTTAGTT+TGG - chr4_4:73272304-73272323 Msa0701800:intron 30.0%
! TGAACTTCAATTGATTCAAC+AGG + chr4_4:73272418-73272437 None:intergenic 30.0%
TTGAATCAATTGAAGTTCAG+CGG - chr4_4:73272419-73272438 Msa0701800:intron 30.0%
TTGGATCTTAGAGATAATCT+TGG - chr4_4:73272677-73272696 Msa0701800:CDS 30.0%
ATCTTAGAGATAATCTTGGT+GGG - chr4_4:73272681-73272700 Msa0701800:CDS 30.0%
TTCAAAGCAGAAACTAAGAA+TGG + chr4_4:73272746-73272765 None:intergenic 30.0%
TGGGAAAACAAAAACAATCT+TGG + chr4_4:73272887-73272906 None:intergenic 30.0%
GTTACATTCAATACAACACA+TGG + chr4_4:73273095-73273114 None:intergenic 30.0%
!!! TTTGCCCTTTTAATTTTTGC+AGG - chr4_4:73273152-73273171 Msa0701800:intron 30.0%
AAGCTTTGCAATTTCAATTC+CGG + chr4_4:73273178-73273197 None:intergenic 30.0%
! GTTTTACACAATGTATGCTT+TGG + chr4_4:73273263-73273282 None:intergenic 30.0%
TGTGTAAAACATTATTGGAG+AGG - chr4_4:73273273-73273292 Msa0701800:intron 30.0%
CATGAGACCAATATTATTAG+TGG + chr4_4:73273431-73273450 None:intergenic 30.0%
TGTTTAGTAGATAACCAGTT+AGG - chr4_4:73273612-73273631 Msa0701800:intron 30.0%
GAATATATCATCATCCTAAC+TGG + chr4_4:73273629-73273648 None:intergenic 30.0%
GTTAAAATTGACTGCTATCT+TGG - chr4_4:73273694-73273713 Msa0701800:intron 30.0%
!!! TCTTCAACTGTTGTTTTCAA+TGG - chr4_4:73273724-73273743 Msa0701800:intron 30.0%
!!! CTGTTGTTTTCAATGGATTT+TGG - chr4_4:73273731-73273750 Msa0701800:intron 30.0%
GTTTCTAATGTCATCATGAT+AGG - chr4_4:73273775-73273794 Msa0701800:intron 30.0%
! GGAAAAACTTTTACAACAAG+AGG + chr4_4:73273875-73273894 None:intergenic 30.0%
TAAGAAAAAGAGAGGAGATT+AGG + chr4_4:73273958-73273977 None:intergenic 30.0%
AATAATCAATCAGTACAGCT+TGG + chr4_4:73274343-73274362 None:intergenic 30.0%
!! TACTGCATTTTGAAAGATGT+TGG + chr4_4:73274837-73274856 None:intergenic 30.0%
CAAGGATAAAACAGTTTCTA+CGG - chr4_4:73274865-73274884 Msa0701800:CDS 30.0%
ATAGACACATAACACAAGAT+TGG - chr4_4:73274989-73275008 Msa0701800:CDS 30.0%
!! TGTTGAAAGTATTGTTGGAG+TGG + chr4_4:73270381-73270400 None:intergenic 35.0%
! TGAAGATGATGATGATGATG+GGG + chr4_4:73270404-73270423 None:intergenic 35.0%
! GATGAAGATGATGATGATGA+TGG + chr4_4:73270406-73270425 None:intergenic 35.0%
GAAAGCTTAGTGGGAATAAT+TGG + chr4_4:73270431-73270450 None:intergenic 35.0%
TATTGCTAGCTAAGTAGCTT+AGG - chr4_4:73270872-73270891 Msa0701800:three_prime_UTR 35.0%
!!! TTGATGTTGTTTTTGTGTGG+TGG - chr4_4:73271099-73271118 Msa0701800:three_prime_UTR 35.0%
GGTGAAAGAAAACGTGTATA+AGG + chr4_4:73271249-73271268 None:intergenic 35.0%
!! TTTTCAATAGTGTTGCTCTG+TGG - chr4_4:73271292-73271311 Msa0701800:three_prime_UTR 35.0%
!! CAATTTACGCCATGTTTTAG+GGG + chr4_4:73271545-73271564 None:intergenic 35.0%
! CCAATTTACGCCATGTTTTA+GGG + chr4_4:73271546-73271565 None:intergenic 35.0%
! CTGGTATTGGAATAAACCTT+AGG - chr4_4:73271837-73271856 Msa0701800:intron 35.0%
ATTGGCAGTTAATAACACAG+AGG - chr4_4:73272203-73272222 Msa0701800:intron 35.0%
!! ATCTGTGACTATTCAGGTTT+TGG - chr4_4:73272281-73272300 Msa0701800:intron 35.0%
! CACTTTCAGTTTGTTCCATA+CGG + chr4_4:73272474-73272493 None:intergenic 35.0%
GCTCGAAAAGATTTAGTCAT+CGG - chr4_4:73272541-73272560 Msa0701800:intron 35.0%
GATCTTAGAGATAATCTTGG+TGG - chr4_4:73272680-73272699 Msa0701800:CDS 35.0%
AAGAATGGTATAGGTAGACA+GGG + chr4_4:73272731-73272750 None:intergenic 35.0%
TAAGAATGGTATAGGTAGAC+AGG + chr4_4:73272732-73272751 None:intergenic 35.0%
GCAGAAACTAAGAATGGTAT+AGG + chr4_4:73272740-73272759 None:intergenic 35.0%
ACAAATGCTCAAAGTGAATG+TGG - chr4_4:73272954-73272973 Msa0701800:intron 35.0%
AGGGCAAACAAAACTGAATT+AGG + chr4_4:73273140-73273159 None:intergenic 35.0%
TCCTTAAAATGTGATGTTGG+AGG - chr4_4:73273345-73273364 Msa0701800:intron 35.0%
! ACCTCCAACATCACATTTTA+AGG + chr4_4:73273349-73273368 None:intergenic 35.0%
TCTTCACTCTGTACAGAAAA+GGG + chr4_4:73273525-73273544 None:intergenic 35.0%
ATCTTCACTCTGTACAGAAA+AGG + chr4_4:73273526-73273545 None:intergenic 35.0%
GTGTGAGCTAATCGATAAAA+TGG - chr4_4:73273575-73273594 Msa0701800:intron 35.0%
AAGAGAGGAGATTAGGAAAT+CGG + chr4_4:73273951-73273970 None:intergenic 35.0%
TACAGTATGTCGTTGTTTAG+TGG - chr4_4:73274024-73274043 Msa0701800:intron 35.0%
! CTTTTTGATCTGTATCATGC+AGG - chr4_4:73274078-73274097 Msa0701800:intron 35.0%
CTTGAAGCTCAAATACAGAT+TGG + chr4_4:73274383-73274402 None:intergenic 35.0%
TCTGTATTTGAGCTTCAAGA+TGG - chr4_4:73274384-73274403 Msa0701800:intron 35.0%
CTGTATTTGAGCTTCAAGAT+GGG - chr4_4:73274385-73274404 Msa0701800:intron 35.0%
CAATTATACCTGGAAGTTTC+TGG + chr4_4:73274491-73274510 None:intergenic 35.0%
ATGTAATCGAGTGTCAATGT+CGG - chr4_4:73274666-73274685 Msa0701800:CDS 35.0%
! CAAATGCAATCTTTTGCTTC+TGG - chr4_4:73274894-73274913 Msa0701800:CDS 35.0%
ACACATAACACAAGATTGGT+AGG - chr4_4:73274993-73275012 Msa0701800:CDS 35.0%
! AGTAATCTAAGAAAGCATGC+AGG - chr4_4:73275020-73275039 Msa0701800:five_prime_UTR 35.0%
GCAGTAATGAGATGAATGAG+AGG - chr4_4:73270132-73270151 Msa0701800:three_prime_UTR 40.0%
ATGAGATGAATGAGAGGCTA+TGG - chr4_4:73270138-73270157 Msa0701800:three_prime_UTR 40.0%
! AGCAAAAAATGCTGGTTACG+TGG + chr4_4:73270190-73270209 None:intergenic 40.0%
GCAGAAAGAAGATGAATGTG+TGG - chr4_4:73270333-73270352 Msa0701800:three_prime_UTR 40.0%
!! TGAAAGTATTGTTGGAGTGG+TGG + chr4_4:73270378-73270397 None:intergenic 40.0%
!! TGGGGTGTTGAAAGTATTGT+TGG + chr4_4:73270386-73270405 None:intergenic 40.0%
TTGTGAAGGGAAAGCTTAGT+GGG + chr4_4:73270440-73270459 None:intergenic 40.0%
TATCTCGAAGCTCAACATCA+CGG + chr4_4:73270580-73270599 None:intergenic 40.0%
! TACCAATGAAGGACTTGTTC+AGG - chr4_4:73270628-73270647 Msa0701800:intron 40.0%
TTCCTGAACAAGTCCTTCAT+TGG + chr4_4:73270633-73270652 None:intergenic 40.0%
!! TTTGGTTTGTAGCTTGGAGT+TGG - chr4_4:73270808-73270827 Msa0701800:intron 40.0%
CGAGTAAATGTCAGAGACTT+AGG + chr4_4:73270941-73270960 None:intergenic 40.0%
! TTATGTCTATGTGTCGGTGT+TGG - chr4_4:73271015-73271034 Msa0701800:intron 40.0%
!! TTTGGTGTTTGTGTCTGTGT+CGG - chr4_4:73271045-73271064 Msa0701800:intron 40.0%
! GTTTTTGTGTGGTGGTTAGT+TGG - chr4_4:73271107-73271126 Msa0701800:three_prime_UTR 40.0%
TGAGCAATTCCATTCAGACA+AGG - chr4_4:73271175-73271194 Msa0701800:intron 40.0%
TTCCATTCAGACAAGGTCAA+AGG - chr4_4:73271182-73271201 Msa0701800:intron 40.0%
! TACACGTTTTCTTTCACCTG+AGG - chr4_4:73271251-73271270 Msa0701800:three_prime_UTR 40.0%
AATATCAAGAATCGCGATCG+GGG + chr4_4:73271373-73271392 None:intergenic 40.0%
CAATATCAAGAATCGCGATC+GGG + chr4_4:73271374-73271393 None:intergenic 40.0%
GCAATATCAAGAATCGCGAT+CGG + chr4_4:73271375-73271394 None:intergenic 40.0%
TTGATCTAATACTGCAGCTG+CGG - chr4_4:73271481-73271500 Msa0701800:CDS 40.0%
CCCTAAAACATGGCGTAAAT+TGG - chr4_4:73271543-73271562 Msa0701800:intron 40.0%
! GCCAATTTACGCCATGTTTT+AGG + chr4_4:73271547-73271566 None:intergenic 40.0%
AATTTCCAACTCAGACGACA+CGG + chr4_4:73271587-73271606 None:intergenic 40.0%
! AAGAAACACGAGAAGCACAA+TGG + chr4_4:73271752-73271771 None:intergenic 40.0%
AGGTATGACATGACTGGTAT+TGG - chr4_4:73271824-73271843 Msa0701800:intron 40.0%
TTTCATCCGTAACTTCCCTA+AGG + chr4_4:73271856-73271875 None:intergenic 40.0%
AGGGAAGTTACGGATGAAAA+TGG - chr4_4:73271857-73271876 Msa0701800:intron 40.0%
GACAACTCTACCAATTCACT+CGG - chr4_4:73271956-73271975 Msa0701800:intron 40.0%
AAGACATTAGCCGAGTGAAT+TGG + chr4_4:73271969-73271988 None:intergenic 40.0%
TGGTTAGGGGGATGAAATAT+TGG - chr4_4:73272185-73272204 Msa0701800:intron 40.0%
TAGTCACAGATGTTCCGTTA+GGG + chr4_4:73272272-73272291 None:intergenic 40.0%
ATAGTCACAGATGTTCCGTT+AGG + chr4_4:73272273-73272292 None:intergenic 40.0%
CGTATGGAACAAACTGAAAG+TGG - chr4_4:73272472-73272491 Msa0701800:intron 40.0%
!! AAAGTGGTGCTGCTCATATT+GGG - chr4_4:73272488-73272507 Msa0701800:intron 40.0%
! ATGCATTGAACTCTTTGAGG+CGG + chr4_4:73272519-73272538 None:intergenic 40.0%
CCAATGCATTGAACTCTTTG+AGG + chr4_4:73272522-73272541 None:intergenic 40.0%
CCTCAAAGAGTTCAATGCAT+TGG - chr4_4:73272519-73272538 Msa0701800:intron 40.0%
AATGAAGCGACTTCAAGACA+TGG - chr4_4:73272637-73272656 Msa0701800:intron 40.0%
ATGAAGCGACTTCAAGACAT+GGG - chr4_4:73272638-73272657 Msa0701800:intron 40.0%
! GGGTGCCTCATATTTTGTAT+TGG - chr4_4:73272658-73272677 Msa0701800:CDS 40.0%
ATGTGTGTTCGTGCAGATTA+TGG - chr4_4:73272848-73272867 Msa0701800:CDS 40.0%
AGTTGTGCTCAAACATGCTT+TGG - chr4_4:73273049-73273068 Msa0701800:intron 40.0%
CCGGCCTGCAAAAATTAAAA+GGG + chr4_4:73273159-73273178 None:intergenic 40.0%
!!! CCCTTTTAATTTTTGCAGGC+CGG - chr4_4:73273156-73273175 Msa0701800:intron 40.0%
TCCGGCCTGCAAAAATTAAA+AGG + chr4_4:73273160-73273179 None:intergenic 40.0%
! GCAAAGCTTTTCCTAAACGA+AGG - chr4_4:73273189-73273208 Msa0701800:intron 40.0%
TTTCCTAAACGAAGGAGACA+CGG - chr4_4:73273197-73273216 Msa0701800:intron 40.0%
TTCACTCTGTACAGAAAAGG+GGG + chr4_4:73273523-73273542 None:intergenic 40.0%
CTTCACTCTGTACAGAAAAG+GGG + chr4_4:73273524-73273543 None:intergenic 40.0%
! CTTTTACAACAAGAGGAGCA+CGG + chr4_4:73273868-73273887 None:intergenic 40.0%
AGAGAGGAGATTAGGAAATC+GGG + chr4_4:73273950-73273969 None:intergenic 40.0%
TCTGGTGTGGTTATAACTGT+TGG - chr4_4:73274408-73274427 Msa0701800:intron 40.0%
CTGGTGTGGTTATAACTGTT+GGG - chr4_4:73274409-73274428 Msa0701800:intron 40.0%
GTATGTAACACCAAAGCACA+AGG - chr4_4:73274434-73274453 Msa0701800:intron 40.0%
CCATTTATGTCCTTGTGCTT+TGG + chr4_4:73274447-73274466 None:intergenic 40.0%
CCAAAGCACAAGGACATAAA+TGG - chr4_4:73274444-73274463 Msa0701800:intron 40.0%
CACAAGGACATAAATGGCAA+CGG - chr4_4:73274450-73274469 Msa0701800:intron 40.0%
CTTTCTTTCTCTCCTTGTCT+CGG - chr4_4:73274527-73274546 Msa0701800:intron 40.0%
TTTCTTTCTCTCCTTGTCTC+GGG - chr4_4:73274528-73274547 Msa0701800:intron 40.0%
AAATGCAGTATGCTTCAGCA+AGG - chr4_4:73274847-73274866 Msa0701800:CDS 40.0%
CATGCAGGAGTTCGTATTTA+AGG - chr4_4:73275035-73275054 Msa0701800:five_prime_UTR 40.0%
AAGTTGCTTCAGTTATGCTC+TGG + chr4_4:73275063-73275082 None:intergenic 40.0%
AGAGCATAACTGAAGCAACT+TGG - chr4_4:73275062-73275081 Msa0701800:five_prime_UTR 40.0%
GTTGTGAAGGGAAAGCTTAG+TGG + chr4_4:73270441-73270460 None:intergenic 45.0%
! CAAAGGAGAGTGTAGTTGCA+AGG + chr4_4:73270469-73270488 None:intergenic 45.0%
CTTGCAACTACACTCTCCTT+TGG - chr4_4:73270467-73270486 Msa0701800:three_prime_UTR 45.0%
GAAGAGCAGATGCAGAAGAA+GGG + chr4_4:73270511-73270530 None:intergenic 45.0%
TGAAGAGCAGATGCAGAAGA+AGG + chr4_4:73270512-73270531 None:intergenic 45.0%
TTTCGGAGGAAGTAGAGAGA+GGG + chr4_4:73270553-73270572 None:intergenic 45.0%
CTCAACATCACGGCATGTTT+CGG + chr4_4:73270570-73270589 None:intergenic 45.0%
! CCTTCATTGGTAACAACCTC+AGG + chr4_4:73270620-73270639 None:intergenic 45.0%
CCTGAGGTTGTTACCAATGA+AGG - chr4_4:73270617-73270636 Msa0701800:intron 45.0%
! AAGGACTTGTTCAGGAAGCT+TGG - chr4_4:73270636-73270655 Msa0701800:intron 45.0%
! GAACATTGATGATACCTGCC+AGG + chr4_4:73270717-73270736 None:intergenic 45.0%
!!! GTGGGTTTTGGTTTGTAGCT+TGG - chr4_4:73270802-73270821 Msa0701800:intron 45.0%
!! TGGTGGTTAGTTGGTGCTAA+TGG - chr4_4:73271116-73271135 Msa0701800:intron 45.0%
TGCCTTTGACCTTGTCTGAA+TGG + chr4_4:73271187-73271206 None:intergenic 45.0%
AAGCGAATGCTGACCAGTTT+GGG - chr4_4:73271219-73271238 Msa0701800:three_prime_UTR 45.0%
TGTATAAGGATCGCCCAAAC+TGG + chr4_4:73271235-73271254 None:intergenic 45.0%
! ACGTTTTCTTTCACCTGAGG+AGG - chr4_4:73271254-73271273 Msa0701800:three_prime_UTR 45.0%
!! GAAGAATGGATTACCTCCTC+AGG + chr4_4:73271270-73271289 None:intergenic 45.0%
! TCAATAGTGTTGCTCTGTGG+AGG - chr4_4:73271295-73271314 Msa0701800:three_prime_UTR 45.0%
! TTTTACCGTGTCGTCTGAGT+TGG - chr4_4:73271579-73271598 Msa0701800:intron 45.0%
! GTGTCGTCTGAGTTGGAAAT+TGG - chr4_4:73271586-73271605 Msa0701800:intron 45.0%
AAAAGTTCTCCAAGATGGCG+AGG - chr4_4:73271804-73271823 Msa0701800:intron 45.0%
CGGATGAAAATGGAGACCAT+AGG - chr4_4:73271867-73271886 Msa0701800:intron 45.0%
AAATGGAGACCATAGGCTGA+AGG - chr4_4:73271874-73271893 Msa0701800:intron 45.0%
! AGACCATAGGCTGAAGGTAT+TGG - chr4_4:73271880-73271899 Msa0701800:intron 45.0%
!! GACCATAGGCTGAAGGTATT+GGG - chr4_4:73271881-73271900 Msa0701800:intron 45.0%
ATCCCAATACCTTCAGCCTA+TGG + chr4_4:73271886-73271905 None:intergenic 45.0%
! GAAGTATCATCCCTGTTGCA+AGG - chr4_4:73272246-73272265 Msa0701800:intron 45.0%
CGGAACATCTGTGACTATTC+AGG - chr4_4:73272275-73272294 Msa0701800:intron 45.0%
CTAAAAGCAAAGGCTAGAGC+AGG + chr4_4:73272332-73272351 None:intergenic 45.0%
AGCTCAAGCATGGAAACTGT+GGG - chr4_4:73272392-73272411 Msa0701800:intron 45.0%
TGAAGTTCAGCGGCAATTTG+TGG - chr4_4:73272429-73272448 Msa0701800:intron 45.0%
TGTTCCATACGGTAAGAGAC+TGG + chr4_4:73272463-73272482 None:intergenic 45.0%
!! GAAAGTGGTGCTGCTCATAT+TGG - chr4_4:73272487-73272506 Msa0701800:intron 45.0%
TTACCGTGTCTCCTTCGTTT+AGG + chr4_4:73273203-73273222 None:intergenic 45.0%
TGATAGGTCATCTACACTGC+TGG - chr4_4:73273791-73273810 Msa0701800:intron 45.0%
!! AACAACAGCTTGCTGGAACT+GGG + chr4_4:73273825-73273844 None:intergenic 45.0%
!! AAACAACAGCTTGCTGGAAC+TGG + chr4_4:73273826-73273845 None:intergenic 45.0%
! GTTCCAGCAAGCTGTTGTTT+CGG - chr4_4:73273826-73273845 Msa0701800:intron 45.0%
TATCCGAAACAACAGCTTGC+TGG + chr4_4:73273832-73273851 None:intergenic 45.0%
CCTCACTATTTCACTAGCAC+TGG + chr4_4:73274125-73274144 None:intergenic 45.0%
CCAGTGCTAGTGAAATAGTG+AGG - chr4_4:73274122-73274141 Msa0701800:CDS 45.0%
AATTGTCGAGCTGTTCTCGT+TGG - chr4_4:73274246-73274265 Msa0701800:intron 45.0%
TTTGAGCTTCAAGATGGGTC+TGG - chr4_4:73274390-73274409 Msa0701800:intron 45.0%
TTCTTTCTCTCCTTGTCTCG+GGG - chr4_4:73274529-73274548 Msa0701800:intron 45.0%
!! AAGCATTGGAGTTGCTACCA+TGG - chr4_4:73274553-73274572 Msa0701800:intron 45.0%
! AGCATTGGAGTTGCTACCAT+GGG - chr4_4:73274554-73274573 Msa0701800:intron 45.0%
ACAATCTAGTGCTAGTCCCA+TGG + chr4_4:73274573-73274592 None:intergenic 45.0%
CATCCCAAGCTGCAAATACA+GGG + chr4_4:73274807-73274826 None:intergenic 45.0%
TCATCCCAAGCTGCAAATAC+AGG + chr4_4:73274808-73274827 None:intergenic 45.0%
!! TGCAAGGAGGGTGTTGTGAA+GGG + chr4_4:73270453-73270472 None:intergenic 50.0%
!! TTGCAAGGAGGGTGTTGTGA+AGG + chr4_4:73270454-73270473 None:intergenic 50.0%
! GGAGAGTGTAGTTGCAAGGA+GGG + chr4_4:73270465-73270484 None:intergenic 50.0%
! AGGAGAGTGTAGTTGCAAGG+AGG + chr4_4:73270466-73270485 None:intergenic 50.0%
GGGGGAGAAGAATAAGCCAA+AGG + chr4_4:73270486-73270505 None:intergenic 50.0%
AGATGCAGAAGAAGGGAAGG+GGG + chr4_4:73270504-73270523 None:intergenic 50.0%
CAGATGCAGAAGAAGGGAAG+GGG + chr4_4:73270505-73270524 None:intergenic 50.0%
GCAGATGCAGAAGAAGGGAA+GGG + chr4_4:73270506-73270525 None:intergenic 50.0%
AGCAGATGCAGAAGAAGGGA+AGG + chr4_4:73270507-73270526 None:intergenic 50.0%
GTAGAGAGAGGGATTGGAAG+AGG + chr4_4:73270542-73270561 None:intergenic 50.0%
GAGGAAGTAGAGAGAGGGAT+TGG + chr4_4:73270548-73270567 None:intergenic 50.0%
GTTTCGGAGGAAGTAGAGAG+AGG + chr4_4:73270554-73270573 None:intergenic 50.0%
AACATCACGGCATGTTTCGG+AGG + chr4_4:73270567-73270586 None:intergenic 50.0%
GTAACAACCTCAGGAGCAGT+TGG + chr4_4:73270611-73270630 None:intergenic 50.0%
TTGATACTGGTCGCAACCGT+TGG - chr4_4:73270681-73270700 Msa0701800:intron 50.0%
! CTGTGTCGGTGCTTCTTCAT+AGG - chr4_4:73271059-73271078 Msa0701800:intron 50.0%
CAAGCGAATGCTGACCAGTT+TGG - chr4_4:73271218-73271237 Msa0701800:three_prime_UTR 50.0%
CTGTCTGTGCCCCTAAAACA+TGG - chr4_4:73271533-73271552 Msa0701800:CDS 50.0%
CATGTCATACCTCGCCATCT+TGG + chr4_4:73271816-73271835 None:intergenic 50.0%
ATGGCGAGGTATGACATGAC+TGG - chr4_4:73271818-73271837 Msa0701800:intron 50.0%
! TCATTCTGCTGGTGTCAGAC+AGG - chr4_4:73271925-73271944 Msa0701800:intron 50.0%
GAGCAGGTGCCAAACTAACT+TGG + chr4_4:73272316-73272335 None:intergenic 50.0%
CGTTGTTGTCAGCTCAAGCA+TGG - chr4_4:73272382-73272401 Msa0701800:intron 50.0%
CAGCTCAAGCATGGAAACTG+TGG - chr4_4:73272391-73272410 Msa0701800:intron 50.0%
CACACCAGTCTCTTACCGTA+TGG - chr4_4:73272456-73272475 Msa0701800:intron 50.0%
!! TAATCTTGGTGGGCTAGTGC+AGG - chr4_4:73272691-73272710 Msa0701800:CDS 50.0%
TCGTGCAGATTATGGCTGAG+AGG - chr4_4:73272856-73272875 Msa0701800:CDS 50.0%
ACTCTGTACAGAAAAGGGGG+AGG + chr4_4:73273520-73273539 None:intergenic 50.0%
!! ACAACAGCTTGCTGGAACTG+GGG + chr4_4:73273824-73273843 None:intergenic 50.0%
! ACAAGAGGAGCACGGATCAA+TGG + chr4_4:73273860-73273879 None:intergenic 50.0%
CTCGTTGGAAAACGCACGTA+TGG - chr4_4:73274261-73274280 Msa0701800:intron 50.0%
TGGAAAACGCACGTATGGCA+AGG - chr4_4:73274266-73274285 Msa0701800:intron 50.0%
! CCTGGAAGTTTCTGGAAGTC+AGG + chr4_4:73274483-73274502 None:intergenic 50.0%
CCTGACTTCCAGAAACTTCC+AGG - chr4_4:73274480-73274499 Msa0701800:intron 50.0%
CCAAGCTGCAAATACAGGGA+GGG + chr4_4:73274803-73274822 None:intergenic 50.0%
CCTCCCTGTATTTGCAGCTT+GGG - chr4_4:73274801-73274820 Msa0701800:CDS 50.0%
! TTGCTTCTGGTCTTCCAGCA+AGG - chr4_4:73274907-73274926 Msa0701800:CDS 50.0%
! TGCTTCTGGTCTTCCAGCAA+GGG - chr4_4:73274908-73274927 Msa0701800:CDS 50.0%
TGCGGATTCTTTACCCTTGC+TGG + chr4_4:73274924-73274943 None:intergenic 50.0%
AGGGTAAAGAATCCGCATGC+TGG - chr4_4:73274927-73274946 Msa0701800:CDS 50.0%
! GGAGTGGTGGAGAGTGATGA+AGG + chr4_4:73270365-73270384 None:intergenic 55.0%
GAGAGAGGGATTGGAAGAGG+AGG + chr4_4:73270539-73270558 None:intergenic 55.0%
CACAGTTCCAACTGCTCCTG+AGG - chr4_4:73270601-73270620 Msa0701800:intron 55.0%
! ACCGTTGGTCTCAGGATACC+TGG - chr4_4:73270696-73270715 Msa0701800:intron 55.0%
GCCAGGTATCCTGAGACCAA+CGG + chr4_4:73270700-73270719 None:intergenic 55.0%
TTGGTCTCAGGATACCTGGC+AGG - chr4_4:73270700-73270719 Msa0701800:intron 55.0%
!! GTCGGTGTTGGTGTCGAGTT+TGG - chr4_4:73271027-73271046 Msa0701800:intron 55.0%
TCAAGAATCGCGATCGGGGT+TGG + chr4_4:73271369-73271388 None:intergenic 55.0%
CTGACACCAGCAGAATGAGC+AGG + chr4_4:73271923-73271942 None:intergenic 55.0%
TCCCTGTTGCAAGGCCCTAA+CGG - chr4_4:73272255-73272274 Msa0701800:intron 55.0%
TCCGTTAGGGCCTTGCAACA+GGG + chr4_4:73272259-73272278 None:intergenic 55.0%
TTCCGTTAGGGCCTTGCAAC+AGG + chr4_4:73272260-73272279 None:intergenic 55.0%
!! CAACAGCTTGCTGGAACTGG+GGG + chr4_4:73273823-73273842 None:intergenic 55.0%
GCTTCAAGATGGGTCTGGTG+TGG - chr4_4:73274395-73274414 Msa0701800:intron 55.0%
CCCTCCCTGTATTTGCAGCT+TGG - chr4_4:73274800-73274819 Msa0701800:CDS 55.0%
CCCAAGCTGCAAATACAGGG+AGG + chr4_4:73274804-73274823 None:intergenic 55.0%
ACATGGCAGCTTCCAGCATG+CGG + chr4_4:73274942-73274961 None:intergenic 55.0%
! TGGTCGCAACCGTTGGTCTC+AGG - chr4_4:73270688-73270707 Msa0701800:intron 60.0%
TGGCAAGGCAAGGGCCCATA+AGG + chr4_4:73271349-73271368 None:intergenic 60.0%
! GATCGGGGTTGGCAAGGCAA+GGG + chr4_4:73271358-73271377 None:intergenic 60.0%
! AATCGCGATCGGGGTTGGCA+AGG + chr4_4:73271364-73271383 None:intergenic 60.0%
GACGGTCCTGCTCATTCTGC+TGG - chr4_4:73271914-73271933 Msa0701800:intron 60.0%
CCAATGCTTGCCCCGAGACA+AGG + chr4_4:73274542-73274561 None:intergenic 60.0%
CCTTGTCTCGGGGCAAGCAT+TGG - chr4_4:73274539-73274558 Msa0701800:intron 60.0%
! CGATCGGGGTTGGCAAGGCA+AGG + chr4_4:73271359-73271378 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 73270090 73275266 73270090 ID=Msa0701800;Name=Msa0701800
chr4_4 mRNA 73270090 73275266 73270090 ID=Msa0701800-mRNA-1;Parent=Msa0701800;Name=Msa0701800-mRNA-1;_AED=0.14;_eAED=0.14;_QI=254|1|1|1|1|0.90|11|846|389
chr4_4 exon 73270090 73270538 73270090 ID=Msa0701800-mRNA-1:exon:22458;Parent=Msa0701800-mRNA-1
chr4_4 exon 73270855 73270984 73270855 ID=Msa0701800-mRNA-1:exon:22457;Parent=Msa0701800-mRNA-1
chr4_4 exon 73271069 73271131 73271069 ID=Msa0701800-mRNA-1:exon:22456;Parent=Msa0701800-mRNA-1
chr4_4 exon 73271218 73271559 73271218 ID=Msa0701800-mRNA-1:exon:22455;Parent=Msa0701800-mRNA-1
chr4_4 exon 73272138 73272182 73272138 ID=Msa0701800-mRNA-1:exon:22454;Parent=Msa0701800-mRNA-1
chr4_4 exon 73272644 73272720 73272644 ID=Msa0701800-mRNA-1:exon:22453;Parent=Msa0701800-mRNA-1
chr4_4 exon 73272794 73272962 73272794 ID=Msa0701800-mRNA-1:exon:22452;Parent=Msa0701800-mRNA-1
chr4_4 exon 73273060 73273164 73273060 ID=Msa0701800-mRNA-1:exon:22451;Parent=Msa0701800-mRNA-1
chr4_4 exon 73273410 73273547 73273410 ID=Msa0701800-mRNA-1:exon:22450;Parent=Msa0701800-mRNA-1
chr4_4 exon 73274081 73274200 73274081 ID=Msa0701800-mRNA-1:exon:22449;Parent=Msa0701800-mRNA-1
chr4_4 exon 73274635 73275266 73274635 ID=Msa0701800-mRNA-1:exon:22448;Parent=Msa0701800-mRNA-1
chr4_4 five_prime_UTR 73275013 73275266 73275013 ID=Msa0701800-mRNA-1:five_prime_utr;Parent=Msa0701800-mRNA-1
chr4_4 CDS 73274635 73275012 73274635 ID=Msa0701800-mRNA-1:cds;Parent=Msa0701800-mRNA-1
chr4_4 CDS 73274081 73274200 73274081 ID=Msa0701800-mRNA-1:cds;Parent=Msa0701800-mRNA-1
chr4_4 CDS 73273410 73273547 73273410 ID=Msa0701800-mRNA-1:cds;Parent=Msa0701800-mRNA-1
chr4_4 CDS 73273060 73273164 73273060 ID=Msa0701800-mRNA-1:cds;Parent=Msa0701800-mRNA-1
chr4_4 CDS 73272794 73272962 73272794 ID=Msa0701800-mRNA-1:cds;Parent=Msa0701800-mRNA-1
chr4_4 CDS 73272644 73272720 73272644 ID=Msa0701800-mRNA-1:cds;Parent=Msa0701800-mRNA-1
chr4_4 CDS 73272138 73272182 73272138 ID=Msa0701800-mRNA-1:cds;Parent=Msa0701800-mRNA-1
chr4_4 CDS 73271422 73271559 73271422 ID=Msa0701800-mRNA-1:cds;Parent=Msa0701800-mRNA-1
chr4_4 three_prime_UTR 73271218 73271421 73271218 ID=Msa0701800-mRNA-1:three_prime_utr;Parent=Msa0701800-mRNA-1
chr4_4 three_prime_UTR 73271069 73271131 73271069 ID=Msa0701800-mRNA-1:three_prime_utr;Parent=Msa0701800-mRNA-1
chr4_4 three_prime_UTR 73270855 73270984 73270855 ID=Msa0701800-mRNA-1:three_prime_utr;Parent=Msa0701800-mRNA-1
chr4_4 three_prime_UTR 73270090 73270538 73270090 ID=Msa0701800-mRNA-1:three_prime_utr;Parent=Msa0701800-mRNA-1
Gene Sequence

>Msa0701800

ATGAATGTGTGGCTAACACCTTCATCACTCTCCACCACTCCAACAATACTTTCAACACCCCATCATCATCATCATCTTCATCTTCCAATTATTCCCACTAAGCTTTCCCTTCACAACACCCTCCTTGCAACTACACTCTCCTTTGGCTTATTCTTCTCCCCCTTCCCTTCTTCTGCATCTGCTCTTCAATCACCTCCTCTTCCAATCCCTCTCTCTACTTCCTCCGAAACATGCCGTGATGTTGAGCTTCGAGATATCACAGTTCCAACTGCTCCTGAGGTTGTTACCAATGAAGGACTTGTTCAGGAAGCTTGGCAGATTGTCAATGATGACTTTCTTGATACTGGTCGCAACCGTTGGTCTCAGGATACCTGGCAGCTAAAGAAGAATGATATTTTGAGCAATTCCATTCAGACAAGGTCAAAGGCACACAATATCATCAAGCGAATGCTGACCAGTTTGGGCGATCCTTATACACGTTTTCTTTCACCTGAGGAGTTCTCCAAGATGGCGAGGTATGACATGACTGGTATTGGAATAAACCTTAGGGAAGTTACGGATGAAAATGGAGACCATAGGCTGAAGGTATTGGGATTAATATTGGACGGTCCTGCTCATTCTGCTGGTGTCAGACAGGGGGATGAAATATTGGCAGTTAATAACACAGAGGTAAATGGAAAATCAGCATTTGAAGTATCATCCCTGTTGCAAGGCCCTAACGGAACATCTGTGACTATTCAGCTCAAGCATGGAAACTGTGGGCCTGTTGAATCAATTGAAGTTCAGCGGCAATTTGTGGCTCGCACACCAGTCTCTTACCGTATGGAACAAACTGAAAGTGGTGCTGCTCATATTGGGTACATCCGCCTCAAAGAGTTCAATGCATTGGCTCGAAAAGATTTAGTCATCGCAATGAAGCGACTTCAAGACATGGGTGCCTCATATTTTGTATTGGATCTTAGAGATAATCTTGGTGGGCTAGTGCAGGCCGGAATTGAAATTGCAAAGCTTTTCCTAAACGAAGGAGACACGGTCATCTACACTGCTGGAAGAGACCCCCAGTTCCAGCAAGCTGTTGTTTCGGATACTTCACCATTGATCCGTGCTCCTCTTGTTGTAAAAGTTTTTCCTACATCTGAATTTTTTTTACAATTAAGTTTACGTCAATGA

Protein sequence

>Msa0701800

MNVWLTPSSLSTTPTILSTPHHHHHLHLPIIPTKLSLHNTLLATTLSFGLFFSPFPSSASALQSPPLPIPLSTSSETCRDVELRDITVPTAPEVVTNEGLVQEAWQIVNDDFLDTGRNRWSQDTWQLKKNDILSNSIQTRSKAHNIIKRMLTSLGDPYTRFLSPEEFSKMARYDMTGIGINLREVTDENGDHRLKVLGLILDGPAHSAGVRQGDEILAVNNTEVNGKSAFEVSSLLQGPNGTSVTIQLKHGNCGPVESIEVQRQFVARTPVSYRMEQTESGAAHIGYIRLKEFNALARKDLVIAMKRLQDMGASYFVLDLRDNLGGLVQAGIEIAKLFLNEGDTVIYTAGRDPQFQQAVVSDTSPLIRAPLVVKVFPTSEFFLQLSLRQ*