AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0708190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0708190 MtrunA17_Chr8g0391061 98.481 395 6 0 1 395 1 395 0.0 742
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0708190 AT1G73840.1 48.418 411 173 17 1 395 1 388 2.87e-79 249
Msa0708190 AT1G73840.2 43.143 350 161 15 61 395 1 327 4.12e-44 156

Find 144 sgRNAs with CRISPR-Local

Find 373 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGGCACTGAAGGCTGATTT+TGG 0.217216 4_4:+81667403 None:intergenic
CCACCGATTGGTGCCAATTT+AGG 0.222463 4_4:-81667057 Msa0708190:CDS
GGAGCTATTGGTTGAACTTT+TGG 0.239042 4_4:+81667555 None:intergenic
ATCTCCCACTCCTTTCAATT+TGG 0.243860 4_4:-81665188 Msa0708190:three_prime_UTR
CCACCTTGCACAGGCAATAT+TGG 0.272411 4_4:+81667477 None:intergenic
AGCATGTTGAAAACCTAAAT+TGG 0.303611 4_4:+81667044 None:intergenic
GGTTTGCACTGAAGGTGGTC+TGG 0.310505 4_4:+81667098 None:intergenic
GGATCTGTTTGGCTTGTTGC+TGG 0.311501 4_4:+81669517 None:intergenic
CTTTGGTTAACATGGGGTTT+TGG 0.322191 4_4:+81669490 None:intergenic
TGGGGAGTCAGATGCCCTTT+AGG 0.329475 4_4:+81667303 None:intergenic
CAGGTTGGAAATATACCATT+TGG 0.354659 4_4:-81665601 Msa0708190:CDS
ATCATCTCAGTCATCTTATC+AGG 0.369211 4_4:-81666834 Msa0708190:intron
AAGTTGATTCTTCGACATTC+CGG 0.379339 4_4:+81669664 None:intergenic
GAGAATCTAGCACAGCATTC+TGG 0.381170 4_4:-81665505 Msa0708190:CDS
GGTCTTTGTGTCGGCTGTAC+TGG 0.384854 4_4:+81667516 None:intergenic
AAATTGATAGAGGGTCTTCT+TGG 0.393175 4_4:-81665543 Msa0708190:CDS
AGCACTTGATTTCTTTGTTC+CGG 0.406131 4_4:+81665260 None:intergenic
TCCTCAGGGACCATCATCTA+TGG 0.406393 4_4:-81665482 Msa0708190:CDS
GTTTGCACTGAAGGTGGTCT+GGG 0.415268 4_4:+81667099 None:intergenic
TTCTTGGATGCCTGGTCCCT+CGG 0.417764 4_4:-81665527 Msa0708190:CDS
AGCACAGCATTCTGGTCCTC+AGG 0.420622 4_4:-81665497 Msa0708190:CDS
AATGCCAACTGCCTCGAGTC+AGG 0.424620 4_4:-81667187 Msa0708190:CDS
AGAGGGTCTTCTTGGATGCC+TGG 0.426008 4_4:-81665535 Msa0708190:CDS
GGAACAGCAGCATATGAAAC+TGG 0.426563 4_4:+81667384 None:intergenic
GGTCTGGGCTGCGGTGGCAA+TGG 0.431160 4_4:+81667114 None:intergenic
AGCAATGCCTTCTCCATGTC+TGG 0.434431 4_4:+81665329 None:intergenic
ATATAAATCTTCAATGAGAT+TGG 0.437556 4_4:+81664969 None:intergenic
AGAAACCTGGAAAAGTGCTT+TGG 0.437758 4_4:+81669473 None:intergenic
TGAGATTGATGACTCGTTGT+AGG 0.439418 4_4:+81667363 None:intergenic
TATTTGGCTTACATGAAAGA+TGG 0.445107 4_4:+81666993 None:intergenic
AAATGCCACAACAGCCTAAA+GGG 0.450959 4_4:-81667317 Msa0708190:CDS
GGATGGAAGGTTTGCACTGA+AGG 0.452928 4_4:+81667090 None:intergenic
AACAGATGCTGGAGCTACTT+GGG 0.459345 4_4:+81667284 None:intergenic
AGGTTGGAAATATACCATTT+GGG 0.465872 4_4:-81665600 Msa0708190:CDS
GAACAGATGCTGGAGCTACT+TGG 0.467900 4_4:+81667283 None:intergenic
GAGGCAGTTGGCATTTGAGT+TGG 0.469452 4_4:+81667195 None:intergenic
CGAGGGTTTATCAGCGAACC+TGG 0.474127 4_4:-81669687 Msa0708190:CDS
CATCAACCATTGCAGACTCC+TGG 0.476133 4_4:-81667162 Msa0708190:CDS
CTGGGCTGCGGTGGCAATGG+TGG 0.483339 4_4:+81667117 None:intergenic
AACGAGGTCTTCGCAATGGC+CGG 0.494684 4_4:-81669725 Msa0708190:exon
ACTGAAGGTGGTCTGGGCTG+CGG 0.496060 4_4:+81667105 None:intergenic
CTGTAAAGCTCTACATCCAC+TGG 0.498184 4_4:+81669854 None:intergenic
GTAGTAGTGCCTGCCCTGGT+GGG 0.503872 4_4:+81666867 None:intergenic
CAAATGCCACAACAGCCTAA+AGG 0.507130 4_4:-81667318 Msa0708190:CDS
AATGCAATGCAAATTGATAG+AGG 0.513025 4_4:-81665553 Msa0708190:CDS
GACTGAGATGATTGTTGACT+TGG 0.515162 4_4:+81666845 None:intergenic
TCTGATTTCAGCAGTCAAGC+TGG 0.516591 4_4:-81665577 Msa0708190:CDS
GCTAGATTCTCCGAGGGACC+AGG 0.516688 4_4:+81665517 None:intergenic
ACAGAGGGTGGAGGTATATG+TGG 0.520018 4_4:+81667243 None:intergenic
CGATATAATGTCTCAGATGA+AGG 0.521213 4_4:-81669639 Msa0708190:intron
ATTTGGCTTACATGAAAGAT+GGG 0.523822 4_4:+81666994 None:intergenic
GATGATTGTGGAACAGATGC+TGG 0.524572 4_4:+81667273 None:intergenic
ATTGGAGCAGGCTGAACACT+TGG 0.524643 4_4:+81667495 None:intergenic
AGATGCCCTTTAGGCTGTTG+TGG 0.524650 4_4:+81667312 None:intergenic
GGCATTTGAGTTGGATGAAG+TGG 0.526366 4_4:+81667204 None:intergenic
CCTAAATTGGCACCAATCGG+TGG 0.528144 4_4:+81667057 None:intergenic
AAGAATCGCACGCACGAAGC+GGG 0.528277 4_4:-81669808 Msa0708190:five_prime_UTR
AAACCTAAATTGGCACCAAT+CGG 0.529814 4_4:+81667054 None:intergenic
CTTGGTAGTAGTGCCTGCCC+TGG 0.530835 4_4:+81666863 None:intergenic
TGCACAGGCAATATTGGAGC+AGG 0.531217 4_4:+81667483 None:intergenic
GGTAGTAGTGCCTGCCCTGG+TGG 0.531403 4_4:+81666866 None:intergenic
GTTGGATCTACGTTCCCACC+AGG 0.534207 4_4:-81666881 Msa0708190:CDS
AATCAGGCGCAAATCATGCT+TGG 0.534517 4_4:-81667682 Msa0708190:intron
GTTTACGACGGCAAAGGCTG+CGG 0.534823 4_4:-81669752 Msa0708190:five_prime_UTR
GGTAGGAGATTTATCTGCTC+CGG 0.535490 4_4:+81665284 None:intergenic
GAAAAGTGCTTTGGTTAACA+TGG 0.539131 4_4:+81669482 None:intergenic
TAACCCTTGACCTTTGTATG+AGG 0.542651 4_4:+81664995 None:intergenic
CTCAAACTCAAATTCCTCCC+AGG 0.544437 4_4:-81667431 Msa0708190:CDS
GGTTTATCAGCGAACCTGGC+CGG 0.544748 4_4:-81669683 Msa0708190:CDS
ATCTACGTTCCCACCAGGGC+AGG 0.545822 4_4:-81666876 Msa0708190:CDS
GATTTCTTTGTTCCGGAGGT+AGG 0.546980 4_4:+81665267 None:intergenic
GCATATGAAACTGGCACTGA+AGG 0.547468 4_4:+81667393 None:intergenic
TCTTGTATGCCACCTTGCAC+AGG 0.548368 4_4:+81667468 None:intergenic
GGAGAAGGCATTGCTTCAGC+AGG 0.548457 4_4:-81665321 Msa0708190:CDS
TTGCAACGAATGTGCAGCTG+TGG 0.549837 4_4:+81667338 None:intergenic
GTTGACTGCAATTAAATCAC+TGG 0.550381 4_4:-81665062 Msa0708190:three_prime_UTR
TCTATTATTGATGCTCAAAG+TGG 0.552685 4_4:-81665155 Msa0708190:three_prime_UTR
TACACCAAATTGAAAGGAGT+GGG 0.555717 4_4:+81665184 None:intergenic
AGAATCTACACCAAATTGAA+AGG 0.558415 4_4:+81665178 None:intergenic
GAAGGTGGTCTGGGCTGCGG+TGG 0.560378 4_4:+81667108 None:intergenic
GCAGATAAATCTCCTACCTC+CGG 0.560675 4_4:-81665279 Msa0708190:CDS
CATGAAAGATGGGCGGAGGA+AGG 0.566167 4_4:+81667004 None:intergenic
AAAAGTGCTTTGGTTAACAT+GGG 0.566181 4_4:+81669483 None:intergenic
ATAATTACCGCAGGAGGCCG+AGG 0.566844 4_4:+81665427 None:intergenic
GCTCCAATATTGCCTGTGCA+AGG 0.568072 4_4:-81667480 Msa0708190:CDS
CTAAATTGGCACCAATCGGT+GGG 0.568515 4_4:+81667058 None:intergenic
ACTTCCTCATACAAAGGTCA+AGG 0.572934 4_4:-81664999 Msa0708190:three_prime_UTR
CATGCAGTTGACACCAGACA+TGG 0.573544 4_4:-81665342 Msa0708190:intron
GATGAATGAACAGAGGGTGG+AGG 0.579071 4_4:+81667234 None:intergenic
GGTGCAAAACCTCCTAGTGT+TGG 0.579641 4_4:-81666899 Msa0708190:CDS
TGAGCAGAAACCATAGATGA+TGG 0.580733 4_4:+81665472 None:intergenic
TGCGCCTGACTCGAGGCAGT+TGG 0.581868 4_4:+81667183 None:intergenic
GATTCTTCGACATTCCGGCC+AGG 0.582129 4_4:+81669669 None:intergenic
GTGCTGCTAATCAGCCTCCT+CGG 0.587990 4_4:-81665444 Msa0708190:CDS
GGCGCAAATCATGCTTGGAA+TGG 0.588794 4_4:-81667677 Msa0708190:CDS
TCTATGGTTTCTGCTCAGAT+CGG 0.590710 4_4:-81665466 Msa0708190:CDS
TGGAAGGTTTGCACTGAAGG+TGG 0.591348 4_4:+81667093 None:intergenic
AATCGCACGCACGAAGCGGG+AGG 0.595099 4_4:-81669805 Msa0708190:five_prime_UTR
TGTGGAAGTTGTGATGATTG+TGG 0.596173 4_4:+81667261 None:intergenic
AATCAGGTTTACGACGGCAA+AGG 0.598557 4_4:-81669758 Msa0708190:five_prime_UTR
ATCGCACGCACGAAGCGGGA+GGG 0.599016 4_4:-81669804 Msa0708190:five_prime_UTR
GGAAAACAAGTAAGCGGCGA+GGG 0.599552 4_4:-81669704 Msa0708190:CDS
TGAACACTTGGTCTTTGTGT+CGG 0.602044 4_4:+81667507 None:intergenic
TCAGCCTCCTCGGCCTCCTG+CGG 0.602819 4_4:-81665434 Msa0708190:intron
CTGCTGAAATCAGACCCAAA+TGG 0.603135 4_4:+81665586 None:intergenic
GCACAGCATTCTGGTCCTCA+GGG 0.603604 4_4:-81665496 Msa0708190:CDS
AGAGGCATATGTGAAAATCC+AGG 0.603771 4_4:+81667144 None:intergenic
AAATTGGCACCAATCGGTGG+GGG 0.604689 4_4:+81667060 None:intergenic
TAAGAATCGCACGCACGAAG+CGG 0.605399 4_4:-81669809 Msa0708190:five_prime_UTR
TAAATTGGCACCAATCGGTG+GGG 0.616828 4_4:+81667059 None:intergenic
ATGCAATGCAAATTGATAGA+GGG 0.619745 4_4:-81665552 Msa0708190:CDS
TGGTTGATGCGCCTGACTCG+AGG 0.620870 4_4:+81667176 None:intergenic
CTTACATGAAAGATGGGCGG+AGG 0.620985 4_4:+81667000 None:intergenic
CTACACCAAATTGAAAGGAG+TGG 0.621012 4_4:+81665183 None:intergenic
GAAGCGGGAGGGACTGTGAG+AGG 0.625226 4_4:-81669793 Msa0708190:five_prime_UTR
ACAGATGCTGGAGCTACTTG+GGG 0.629033 4_4:+81667285 None:intergenic
TTCACAATAATTACCGCAGG+AGG 0.629072 4_4:+81665421 None:intergenic
ACTTGATTTCTTTGTTCCGG+AGG 0.637553 4_4:+81665263 None:intergenic
GGTGGCAATGGTGGTTGCAG+AGG 0.638987 4_4:+81667126 None:intergenic
CGACAACGAGGTCTTCGCAA+TGG 0.639266 4_4:-81669729 Msa0708190:exon
AAAGTGCTTTGGTTAACATG+GGG 0.639464 4_4:+81669484 None:intergenic
GGTGGCATACAAGATCAAGC+AGG 0.642519 4_4:-81667459 Msa0708190:CDS
CTTCCTCATACAAAGGTCAA+GGG 0.646668 4_4:-81664998 Msa0708190:three_prime_UTR
AACGTAGATCCAACACTAGG+AGG 0.646821 4_4:+81666890 None:intergenic
TGCAACGAATGTGCAGCTGT+GGG 0.650445 4_4:+81667339 None:intergenic
TGCTGTGCTAGATTCTCCGA+GGG 0.654352 4_4:+81665511 None:intergenic
ATTACCGCAGGAGGCCGAGG+AGG 0.656048 4_4:+81665430 None:intergenic
TGGCTTACATGAAAGATGGG+CGG 0.666783 4_4:+81666997 None:intergenic
GAAGATGAATGAACAGAGGG+TGG 0.672837 4_4:+81667231 None:intergenic
GGGAACGTAGATCCAACACT+AGG 0.673989 4_4:+81666887 None:intergenic
TTGGATCTACGTTCCCACCA+GGG 0.674955 4_4:-81666880 Msa0708190:CDS
ATCGGCAATCAGGTTTACGA+CGG 0.675352 4_4:-81669764 Msa0708190:five_prime_UTR
ATGGCCGGAAAACAAGTAAG+CGG 0.675868 4_4:-81669710 Msa0708190:CDS
TGTGAAGATGAATGAACAGA+GGG 0.681536 4_4:+81667228 None:intergenic
AATGGTGCAGTCGCAACAAG+CGG 0.683239 4_4:-81667659 Msa0708190:intron
CGGAAAACAAGTAAGCGGCG+AGG 0.688386 4_4:-81669705 Msa0708190:CDS
GTTGACACCAGACATGGAGA+AGG 0.688888 4_4:-81665336 Msa0708190:CDS
ATGCTGTGCTAGATTCTCCG+AGG 0.691552 4_4:+81665510 None:intergenic
CCAATATTGCCTGTGCAAGG+TGG 0.694856 4_4:-81667477 Msa0708190:CDS
CAAAGGCTGCGGCGACAACG+AGG 0.695329 4_4:-81669741 Msa0708190:five_prime_UTR
GAAAATCCAGGAGTCTGCAA+TGG 0.697860 4_4:+81667156 None:intergenic
GCAGGTCATGAGTCTCACAC+CGG 0.699959 4_4:-81665303 Msa0708190:CDS
ACCATAGATGATGGTCCCTG+AGG 0.710726 4_4:+81665481 None:intergenic
CTGTGAAGATGAATGAACAG+AGG 0.739097 4_4:+81667227 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTTAATATTTCACAA+TGG - chr4_4:81665725-81665744 Msa0708190:intron 10.0%
!!! TTAATTTCTAGATACAAAAT+CGG + chr4_4:81665485-81665504 None:intergenic 15.0%
!!! AATATTAAATTTTTCAAGCA+GGG + chr4_4:81665719-81665738 None:intergenic 15.0%
!!! AAATATTAAATTTTTCAAGC+AGG + chr4_4:81665720-81665739 None:intergenic 15.0%
!!! AAATATTTTTGTTTTTGCAA+AGG + chr4_4:81666417-81666436 None:intergenic 15.0%
!! AAATTGTAAACTGAAATATT+TGG + chr4_4:81667826-81667845 None:intergenic 15.0%
!!! TATTTATTGATGAAATTTTC+AGG - chr4_4:81667876-81667895 Msa0708190:intron 15.0%
!! TATACAAACAAAATTATCTT+TGG - chr4_4:81668228-81668247 Msa0708190:intron 15.0%
!!! TTCAATATATATTTTTGACA+TGG + chr4_4:81668450-81668469 None:intergenic 15.0%
!! AAGAAAAATTTAGATTAGAT+GGG - chr4_4:81669775-81669794 Msa0708190:five_prime_UTR 15.0%
!! ATTTAATATTTCACAATGGA+TGG - chr4_4:81665729-81665748 Msa0708190:intron 20.0%
!! TTAATGATAAAAAATCGATC+TGG + chr4_4:81665946-81665965 None:intergenic 20.0%
!!! TAATGTTTCTATCTATTTCA+CGG - chr4_4:81666476-81666495 Msa0708190:intron 20.0%
!!! AAGTTAGATTTTACTTTAGA+CGG - chr4_4:81666528-81666547 Msa0708190:intron 20.0%
!!! AAAATTATCTTTGGTTTACA+TGG - chr4_4:81668237-81668256 Msa0708190:intron 20.0%
!! TTATGTCAATATGAAGATTA+CGG - chr4_4:81668865-81668884 Msa0708190:intron 20.0%
!! ACAAGTAAATCTAAGTAAAA+TGG - chr4_4:81669102-81669121 Msa0708190:intron 20.0%
!! GAAGAAAAATTTAGATTAGA+TGG - chr4_4:81669774-81669793 Msa0708190:five_prime_UTR 20.0%
!! AGAAAAATTTAGATTAGATG+GGG - chr4_4:81669776-81669795 Msa0708190:five_prime_UTR 20.0%
!! ATATAAATCTTCAATGAGAT+TGG + chr4_4:81669834-81669853 None:intergenic 20.0%
!! TCTGTTTTGTATCTATATGT+CGG - chr4_4:81665439-81665458 Msa0708190:CDS 25.0%
! CTAGAAATACATAAGAGAAA+CGG - chr4_4:81665572-81665591 Msa0708190:CDS 25.0%
! AGATTTAGAGATTAATGAGT+TGG - chr4_4:81665602-81665621 Msa0708190:intron 25.0%
!! TAATGAGTTGGATCTAAATA+TGG - chr4_4:81665614-81665633 Msa0708190:intron 25.0%
! TGGTTTATGATAGAACATTA+TGG - chr4_4:81665634-81665653 Msa0708190:intron 25.0%
!!! TTATAGCTTTGGAGTTTTAA+GGG - chr4_4:81665804-81665823 Msa0708190:intron 25.0%
!!! TTTTTTATCATTAATGAGCG+AGG - chr4_4:81665952-81665971 Msa0708190:intron 25.0%
! GTAGTCTATGTATAACATTT+AGG - chr4_4:81666125-81666144 Msa0708190:intron 25.0%
!!! TATGTATAACATTTAGGTTG+AGG - chr4_4:81666131-81666150 Msa0708190:intron 25.0%
!!! ATGTATAACATTTAGGTTGA+GGG - chr4_4:81666132-81666151 Msa0708190:intron 25.0%
! TATATTGATGGAAGTTTGAT+TGG - chr4_4:81666201-81666220 Msa0708190:intron 25.0%
! ATATTGATGGAAGTTTGATT+GGG - chr4_4:81666202-81666221 Msa0708190:intron 25.0%
!! TTGTAGATTGTGTTATGTTT+TGG - chr4_4:81666234-81666253 Msa0708190:intron 25.0%
!! TGTAGATTGTGTTATGTTTT+GGG - chr4_4:81666235-81666254 Msa0708190:intron 25.0%
!!! CTACACATGAAGATTTTTTT+AGG - chr4_4:81666440-81666459 Msa0708190:intron 25.0%
! GTGAAATAGATAGAAACATT+AGG + chr4_4:81666477-81666496 None:intergenic 25.0%
! AAGTAAAATCTAACTTCAGA+GGG + chr4_4:81666524-81666543 None:intergenic 25.0%
! AAAGTAAAATCTAACTTCAG+AGG + chr4_4:81666525-81666544 None:intergenic 25.0%
! TAGATTTGCATGCTAATAAA+TGG - chr4_4:81667209-81667228 Msa0708190:CDS 25.0%
! TTTAGACTTGAAAACTATGT+TGG - chr4_4:81668011-81668030 Msa0708190:intron 25.0%
! GTGGCATCAAAATATATTAT+TGG - chr4_4:81668058-81668077 Msa0708190:intron 25.0%
! CAACTCAAGATAAAAAACTA+TGG + chr4_4:81668298-81668317 None:intergenic 25.0%
!!! TGTTTGTAGTCTTTAATTTG+GGG + chr4_4:81668527-81668546 None:intergenic 25.0%
!! CTGTTTGTAGTCTTTAATTT+GGG + chr4_4:81668528-81668547 None:intergenic 25.0%
! ATTTCTGTCAAACAAAAAGA+AGG - chr4_4:81668779-81668798 Msa0708190:intron 25.0%
! TATGTCAATATGAAGATTAC+GGG - chr4_4:81668866-81668885 Msa0708190:intron 25.0%
! TAAAATCACCAAAATCAACT+TGG + chr4_4:81669068-81669087 None:intergenic 25.0%
! GAAAAATTTAGATTAGATGG+GGG - chr4_4:81669777-81669796 Msa0708190:five_prime_UTR 25.0%
! AAAAATTTAGATTAGATGGG+GGG - chr4_4:81669778-81669797 Msa0708190:five_prime_UTR 25.0%
CTGAATAGAGAAAAACGAAA+GGG + chr4_4:81665246-81665265 None:intergenic 30.0%
TCTGAATAGAGAAAAACGAA+AGG + chr4_4:81665247-81665266 None:intergenic 30.0%
!! AAAAGTGCTTTGGTTAACAT+GGG + chr4_4:81665320-81665339 None:intergenic 30.0%
GTTGTATCGTTGTTATAGTT+TGG - chr4_4:81665397-81665416 Msa0708190:intron 30.0%
CGTTTCTCTTATGTATTTCT+AGG + chr4_4:81665574-81665593 None:intergenic 30.0%
!! GTAAATCCACTAGCTTATTT+TGG - chr4_4:81665751-81665770 Msa0708190:intron 30.0%
!!! TAGCTTATTTTGGAACCATA+GGG - chr4_4:81665761-81665780 Msa0708190:intron 30.0%
!!! GTTATAGCTTTGGAGTTTTA+AGG - chr4_4:81665803-81665822 Msa0708190:intron 30.0%
! AAGGGATTTTTGTGATTCTT+CGG - chr4_4:81665822-81665841 Msa0708190:intron 30.0%
!! ATTGTTTCTGTTGTAGGATT+AGG - chr4_4:81665904-81665923 Msa0708190:intron 30.0%
!! TGTATAACATTTAGGTTGAG+GGG - chr4_4:81666133-81666152 Msa0708190:intron 30.0%
GTAACGAGGTAATATATTGA+TGG - chr4_4:81666189-81666208 Msa0708190:intron 30.0%
GATAGAAACATTAGGAAATG+AGG + chr4_4:81666469-81666488 None:intergenic 30.0%
GCATACACATGTATAAAGAA+TGG + chr4_4:81666598-81666617 None:intergenic 30.0%
AAAGTGTGCAATTCAATTTG+GGG + chr4_4:81666669-81666688 None:intergenic 30.0%
CAAAGTGTGCAATTCAATTT+GGG + chr4_4:81666670-81666689 None:intergenic 30.0%
! ACAGCATACAGATTTGAAAT+CGG + chr4_4:81666730-81666749 None:intergenic 30.0%
AAAGTGTGCAATTCACTTTA+GGG + chr4_4:81666835-81666854 None:intergenic 30.0%
AAACAGTCTAAAAAAGTGAG+CGG + chr4_4:81666977-81666996 None:intergenic 30.0%
CCTGATTAGACAAAACAAAA+TGG + chr4_4:81667105-81667124 None:intergenic 30.0%
!!! CCATTTTGTTTTGTCTAATC+AGG - chr4_4:81667102-81667121 Msa0708190:CDS 30.0%
AATGACAGCAAAATAAAGAG+AGG + chr4_4:81667173-81667192 None:intergenic 30.0%
AGCATGTTGAAAACCTAAAT+TGG + chr4_4:81667759-81667778 None:intergenic 30.0%
!! AATTTAGGTTTTCAACATGC+TGG - chr4_4:81667758-81667777 Msa0708190:intron 30.0%
! ATTTGGCTTACATGAAAGAT+GGG + chr4_4:81667809-81667828 None:intergenic 30.0%
! TATTTGGCTTACATGAAAGA+TGG + chr4_4:81667810-81667829 None:intergenic 30.0%
!! TATTGATGAAATTTTCAGGC+TGG - chr4_4:81667880-81667899 Msa0708190:intron 30.0%
!!! GAAAGTACCTTTTAGATTCA+CGG - chr4_4:81668259-81668278 Msa0708190:intron 30.0%
TTATTCCGAAAATGCTATAG+TGG - chr4_4:81668332-81668351 Msa0708190:intron 30.0%
! TCATTCCACTATAGCATTTT+CGG + chr4_4:81668340-81668359 None:intergenic 30.0%
! ATAGTGGAATGACAGATAAT+TGG - chr4_4:81668348-81668367 Msa0708190:intron 30.0%
GCTGTTTGTAGTCTTTAATT+TGG + chr4_4:81668529-81668548 None:intergenic 30.0%
AGTAGCAGTGGAAAAAAAAA+TGG - chr4_4:81668610-81668629 Msa0708190:intron 30.0%
!! TGTGATTGCTTTATTTCTGA+TGG + chr4_4:81668739-81668758 None:intergenic 30.0%
CAAAAAGAAGGTAAATCACA+AGG - chr4_4:81668791-81668810 Msa0708190:intron 30.0%
! TATTGTACTGATGATTCTGA+AGG - chr4_4:81668903-81668922 Msa0708190:intron 30.0%
TATTTCGCAATTGAGTTAGT+CGG - chr4_4:81669002-81669021 Msa0708190:intron 30.0%
TGTTTAATTAACTAGCATGC+TGG - chr4_4:81669028-81669047 Msa0708190:intron 30.0%
AGGTTGGAAATATACCATTT+GGG - chr4_4:81669200-81669219 Msa0708190:intron 30.0%
AATGCAATGCAAATTGATAG+AGG - chr4_4:81669247-81669266 Msa0708190:intron 30.0%
ATGCAATGCAAATTGATAGA+GGG - chr4_4:81669248-81669267 Msa0708190:intron 30.0%
TAATTCACAATAATTACCGC+AGG + chr4_4:81669385-81669404 None:intergenic 30.0%
AGAATCTACACCAAATTGAA+AGG + chr4_4:81669625-81669644 None:intergenic 30.0%
TCTATTATTGATGCTCAAAG+TGG - chr4_4:81669645-81669664 Msa0708190:CDS 30.0%
!! TGTATGTGAAGTTTTGTAGA+AGG - chr4_4:81669669-81669688 Msa0708190:CDS 30.0%
! AAGTTGATTCTTCGACATTC+CGG + chr4_4:81665139-81665158 None:intergenic 35.0%
CGATATAATGTCTCAGATGA+AGG - chr4_4:81665161-81665180 Msa0708190:three_prime_UTR 35.0%
GTTAGCAATAGCAATAAGGA+GGG + chr4_4:81665224-81665243 None:intergenic 35.0%
! AAGGGTTAGCAATAGCAATA+AGG + chr4_4:81665228-81665247 None:intergenic 35.0%
! AAAGTGCTTTGGTTAACATG+GGG + chr4_4:81665319-81665338 None:intergenic 35.0%
!! GAAAAGTGCTTTGGTTAACA+TGG + chr4_4:81665321-81665340 None:intergenic 35.0%
ACTCTTCTTACTACACACTA+CGG + chr4_4:81665508-81665527 None:intergenic 35.0%
AGTAAGAAGAGTAGATCAGA+TGG - chr4_4:81665516-81665535 Msa0708190:CDS 35.0%
GAGGATAGTCAAATTACAAG+AGG - chr4_4:81665538-81665557 Msa0708190:CDS 35.0%
! TAAGCCTTATCTCACTAAGT+GGG + chr4_4:81665684-81665703 None:intergenic 35.0%
ATGGTTCCAAAATAAGCTAG+TGG + chr4_4:81665760-81665779 None:intergenic 35.0%
!!! CTAGCTTATTTTGGAACCAT+AGG - chr4_4:81665760-81665779 Msa0708190:intron 35.0%
! ATTTTTGTGATTCTTCGGTG+CGG - chr4_4:81665827-81665846 Msa0708190:intron 35.0%
ATATGATCCAAAGTAAGCAC+AGG + chr4_4:81665999-81666018 None:intergenic 35.0%
ATATAGATGTTGCTGAGCTA+AGG - chr4_4:81666055-81666074 Msa0708190:intron 35.0%
!! CAAAAAGGTGTTGCTAGAAA+GGG - chr4_4:81666096-81666115 Msa0708190:intron 35.0%
!! AAAAAGGTGTTGCTAGAAAG+GGG - chr4_4:81666097-81666116 Msa0708190:intron 35.0%
TCGTTACTGCATAATATTGC+AGG + chr4_4:81666176-81666195 None:intergenic 35.0%
TGCAATATTATGCAGTAACG+AGG - chr4_4:81666175-81666194 Msa0708190:intron 35.0%
!! AGATTGTGTTATGTTTTGGG+TGG - chr4_4:81666238-81666257 Msa0708190:intron 35.0%
!! GATTGTGTTATGTTTTGGGT+GGG - chr4_4:81666239-81666258 Msa0708190:intron 35.0%
! AAGTCTTATCCCACTAAATG+AGG + chr4_4:81666316-81666335 None:intergenic 35.0%
TCATTTAGTGGGATAAGACT+TGG - chr4_4:81666315-81666334 Msa0708190:intron 35.0%
AAGTGTGCAATTCAATTTGG+GGG + chr4_4:81666668-81666687 None:intergenic 35.0%
CCAAAGTGTGCAATTCAATT+TGG + chr4_4:81666671-81666690 None:intergenic 35.0%
CCAAATTGAATTGCACACTT+TGG - chr4_4:81666668-81666687 Msa0708190:intron 35.0%
! GGAGTCGTTTGAGTTATATA+AGG - chr4_4:81666698-81666717 Msa0708190:intron 35.0%
AAGTGTGCAATTCACTTTAG+GGG + chr4_4:81666834-81666853 None:intergenic 35.0%
CAAAGTGTGCAATTCACTTT+AGG + chr4_4:81666836-81666855 None:intergenic 35.0%
CTAAAGTGAATTGCACACTT+TGG - chr4_4:81666834-81666853 Msa0708190:intron 35.0%
!! GAGTCGTTTGAGTTGTATAA+GGG - chr4_4:81666865-81666884 Msa0708190:CDS 35.0%
AGCATGCAAATCTATACCAA+AGG + chr4_4:81667203-81667222 None:intergenic 35.0%
GCTAATAAATGGTTGCTTCT+AGG - chr4_4:81667220-81667239 Msa0708190:CDS 35.0%
!!! TGATTGTTTTGAGGAGCTAT+TGG + chr4_4:81667260-81667279 None:intergenic 35.0%
TGTGAAGATGAATGAACAGA+GGG + chr4_4:81667575-81667594 None:intergenic 35.0%
AAACCTAAATTGGCACCAAT+CGG + chr4_4:81667749-81667768 None:intergenic 35.0%
ATCATCTCAGTCATCTTATC+AGG - chr4_4:81667966-81667985 Msa0708190:intron 35.0%
TGAAAACTATGTTGGTACCA+TGG - chr4_4:81668019-81668038 Msa0708190:intron 35.0%
GAAAACTATGTTGGTACCAT+GGG - chr4_4:81668020-81668039 Msa0708190:intron 35.0%
! CTTTACACCATCATGAGTTT+TGG - chr4_4:81668081-81668100 Msa0708190:intron 35.0%
CATGAATCCAAAACTCATGA+TGG + chr4_4:81668091-81668110 None:intergenic 35.0%
TGCTGCAGAAAAAATAGGAT+TGG + chr4_4:81668129-81668148 None:intergenic 35.0%
GATTCTGCTGCAGAAAAAAT+AGG + chr4_4:81668134-81668153 None:intergenic 35.0%
! TCTGAAGTGTCACTACTATT+AGG + chr4_4:81668177-81668196 None:intergenic 35.0%
CATTTCACCGTGAATCTAAA+AGG + chr4_4:81668269-81668288 None:intergenic 35.0%
AAACCTTGGTCTCAATTCTT+TGG + chr4_4:81668637-81668656 None:intergenic 35.0%
TGAGTTGCATAGATCAGAAA+TGG - chr4_4:81668829-81668848 Msa0708190:intron 35.0%
GAGTTGCATAGATCAGAAAT+GGG - chr4_4:81668830-81668849 Msa0708190:intron 35.0%
AGTTGCATAGATCAGAAATG+GGG - chr4_4:81668831-81668850 Msa0708190:intron 35.0%
ATCAGAAATGGGGTAAAGAT+GGG - chr4_4:81668841-81668860 Msa0708190:intron 35.0%
TCATCAGTACAATATGACAG+CGG + chr4_4:81668897-81668916 None:intergenic 35.0%
AGGTTGAAACCAATTAACAC+CGG - chr4_4:81668923-81668942 Msa0708190:intron 35.0%
! GTATATTTTTCTCCTCCTTC+CGG + chr4_4:81668945-81668964 None:intergenic 35.0%
!!! ACCTCAATCCAAGTTGATTT+TGG - chr4_4:81669057-81669076 Msa0708190:intron 35.0%
ACCAAAATCAACTTGGATTG+AGG + chr4_4:81669061-81669080 None:intergenic 35.0%
! CAGGTTGGAAATATACCATT+TGG - chr4_4:81669199-81669218 Msa0708190:intron 35.0%
AAATTGATAGAGGGTCTTCT+TGG - chr4_4:81669257-81669276 Msa0708190:intron 35.0%
AGAGAATATCAATAAGCTGC+AGG + chr4_4:81669429-81669448 None:intergenic 35.0%
AGCACTTGATTTCTTTGTTC+CGG + chr4_4:81669543-81669562 None:intergenic 35.0%
TACACCAAATTGAAAGGAGT+GGG + chr4_4:81669619-81669638 None:intergenic 35.0%
GTTGACTGCAATTAAATCAC+TGG - chr4_4:81669738-81669757 Msa0708190:five_prime_UTR 35.0%
GGTTAGCAATAGCAATAAGG+AGG + chr4_4:81665225-81665244 None:intergenic 40.0%
!! GTTTTGGATGAGGATCTGTT+TGG + chr4_4:81665297-81665316 None:intergenic 40.0%
!!! TTAACATGGGGTTTTGGATG+AGG + chr4_4:81665307-81665326 None:intergenic 40.0%
! CTTTGGTTAACATGGGGTTT+TGG + chr4_4:81665313-81665332 None:intergenic 40.0%
!! GTTAACCAAAGCACTTTTCC+AGG - chr4_4:81665322-81665341 Msa0708190:CDS 40.0%
!! AGAAACCTGGAAAAGTGCTT+TGG + chr4_4:81665330-81665349 None:intergenic 40.0%
!! CCTAGTTCTAGAAAGAAACC+TGG + chr4_4:81665343-81665362 None:intergenic 40.0%
!! CCAGGTTTCTTTCTAGAACT+AGG - chr4_4:81665340-81665359 Msa0708190:intron 40.0%
AAGAAGAGTAGATCAGATGG+AGG - chr4_4:81665519-81665538 Msa0708190:CDS 40.0%
! AAGCCTTATCTCACTAAGTG+GGG + chr4_4:81665683-81665702 None:intergenic 40.0%
! CTAAGCCTTATCTCACTAAG+TGG + chr4_4:81665685-81665704 None:intergenic 40.0%
!! TGATGTGTCGGTTATAGCTT+TGG - chr4_4:81665793-81665812 Msa0708190:intron 40.0%
! GCTAGGAGTGCAATTTATTG+TGG - chr4_4:81665860-81665879 Msa0708190:intron 40.0%
TGTAGGATTAGGAGACATCT+TGG - chr4_4:81665915-81665934 Msa0708190:intron 40.0%
TTATCATTAATGAGCGAGGC+AGG - chr4_4:81665956-81665975 Msa0708190:intron 40.0%
TGCAAGGTATGGTTGCAAAA+AGG - chr4_4:81666081-81666100 Msa0708190:intron 40.0%
!! GCAAAAAGGTGTTGCTAGAA+AGG - chr4_4:81666095-81666114 Msa0708190:intron 40.0%
TTGATGGAAGTTTGATTGGG+TGG - chr4_4:81666205-81666224 Msa0708190:intron 40.0%
! GAAGTTTGATTGGGTGGATT+CGG - chr4_4:81666211-81666230 Msa0708190:intron 40.0%
CTTATCCCACTAAATGAGGT+CGG + chr4_4:81666312-81666331 None:intergenic 40.0%
AGTGTGCAATTCAATTTGGG+GGG + chr4_4:81666667-81666686 None:intergenic 40.0%
!! ATTGCACACTTTGGAATAGC+AGG - chr4_4:81666677-81666696 Msa0708190:intron 40.0%
AGTGTGCAATTCACTTTAGG+GGG + chr4_4:81666833-81666852 None:intergenic 40.0%
! AATTGCACACTTTGGAAGAG+TGG - chr4_4:81666842-81666861 Msa0708190:CDS 40.0%
! ATTGCACACTTTGGAAGAGT+GGG - chr4_4:81666843-81666862 Msa0708190:CDS 40.0%
!! GGAGTCGTTTGAGTTGTATA+AGG - chr4_4:81666864-81666883 Msa0708190:CDS 40.0%
!!! GCTGTCATTTTCACAACCTT+TGG - chr4_4:81667184-81667203 Msa0708190:CDS 40.0%
!! GGAGCTATTGGTTGAACTTT+TGG + chr4_4:81667248-81667267 None:intergenic 40.0%
!! ACTGGTTGCTGATTGTTTTG+AGG + chr4_4:81667269-81667288 None:intergenic 40.0%
! TGAACACTTGGTCTTTGTGT+CGG + chr4_4:81667296-81667315 None:intergenic 40.0%
! TGAGATTGATGACTCGTTGT+AGG + chr4_4:81667440-81667459 None:intergenic 40.0%
AAATGCCACAACAGCCTAAA+GGG - chr4_4:81667483-81667502 Msa0708190:CDS 40.0%
TGTGGAAGTTGTGATGATTG+TGG + chr4_4:81667542-81667561 None:intergenic 40.0%
CTGTGAAGATGAATGAACAG+AGG + chr4_4:81667576-81667595 None:intergenic 40.0%
! AGAGGCATATGTGAAAATCC+AGG + chr4_4:81667659-81667678 None:intergenic 40.0%
! TTAGGTTTTCAACATGCTGG+TGG - chr4_4:81667761-81667780 Msa0708190:intron 40.0%
! GACTGAGATGATTGTTGACT+TGG + chr4_4:81667958-81667977 None:intergenic 40.0%
GTATGTTGTGCTACAACTGT+TGG - chr4_4:81667988-81668007 Msa0708190:intron 40.0%
TCACACATCACAACAAACCT+TGG + chr4_4:81668651-81668670 None:intergenic 40.0%
! TGTGATGTGTGATGATGCAA+AGG - chr4_4:81668659-81668678 Msa0708190:intron 40.0%
GCATATTTCGCTGACAACTA+CGG + chr4_4:81668701-81668720 None:intergenic 40.0%
TAGTTGTCAGCGAAATATGC+AGG - chr4_4:81668701-81668720 Msa0708190:intron 40.0%
GATCAGAAATGGGGTAAAGA+TGG - chr4_4:81668840-81668859 Msa0708190:intron 40.0%
TGAAACCAATTAACACCGGA+AGG - chr4_4:81668927-81668946 Msa0708190:intron 40.0%
GCAGCAATGACAAATTTGTC+AGG + chr4_4:81668977-81668996 None:intergenic 40.0%
!! GAAGTCATGCTTTTTGTGTC+AGG - chr4_4:81669180-81669199 Msa0708190:intron 40.0%
!! TCATGCTTTTTGTGTCAGGT+TGG - chr4_4:81669184-81669203 Msa0708190:intron 40.0%
TGAGCAGAAACCATAGATGA+TGG + chr4_4:81669331-81669350 None:intergenic 40.0%
TCTATGGTTTCTGCTCAGAT+CGG - chr4_4:81669334-81669353 Msa0708190:intron 40.0%
TTCACAATAATTACCGCAGG+AGG + chr4_4:81669382-81669401 None:intergenic 40.0%
AAGCTGCAGGACAATTTCAA+GGG + chr4_4:81669416-81669435 None:intergenic 40.0%
TAAGCTGCAGGACAATTTCA+AGG + chr4_4:81669417-81669436 None:intergenic 40.0%
ACTTGATTTCTTTGTTCCGG+AGG + chr4_4:81669540-81669559 None:intergenic 40.0%
ATCTCCCACTCCTTTCAATT+TGG - chr4_4:81669612-81669631 Msa0708190:intron 40.0%
CTACACCAAATTGAAAGGAG+TGG + chr4_4:81669620-81669639 None:intergenic 40.0%
ACTTCCTCATACAAAGGTCA+AGG - chr4_4:81669801-81669820 Msa0708190:five_prime_UTR 40.0%
CTTCCTCATACAAAGGTCAA+GGG - chr4_4:81669802-81669821 Msa0708190:five_prime_UTR 40.0%
TAACCCTTGACCTTTGTATG+AGG + chr4_4:81669808-81669827 None:intergenic 40.0%
! GACTGTGAGAGGTTTTGCAT+CGG - chr4_4:81665018-81665037 Msa0708190:three_prime_UTR 45.0%
ATCGGCAATCAGGTTTACGA+CGG - chr4_4:81665036-81665055 Msa0708190:three_prime_UTR 45.0%
AATCAGGTTTACGACGGCAA+AGG - chr4_4:81665042-81665061 Msa0708190:three_prime_UTR 45.0%
ATGGCCGGAAAACAAGTAAG+CGG - chr4_4:81665090-81665109 Msa0708190:three_prime_UTR 45.0%
AGGGTGAGAAAGAGAGAAAG+AGG + chr4_4:81665205-81665224 None:intergenic 45.0%
CTTATCTCACTAAGTGGGGT+CGG + chr4_4:81665679-81665698 None:intergenic 45.0%
ACATCACTAGCAATGCCCTA+TGG + chr4_4:81665779-81665798 None:intergenic 45.0%
TGGTTCAGTTCATATGCAGC+TGG - chr4_4:81665880-81665899 Msa0708190:intron 45.0%
GGTTCAGTTCATATGCAGCT+GGG - chr4_4:81665881-81665900 Msa0708190:intron 45.0%
!! GCTGGGATTGTTTCTGTTGT+AGG - chr4_4:81665898-81665917 Msa0708190:intron 45.0%
TAGCGAACCTGTGCTTACTT+TGG - chr4_4:81665989-81666008 Msa0708190:intron 45.0%
AGCTAAGGTTGTGCAAGGTA+TGG - chr4_4:81666070-81666089 Msa0708190:intron 45.0%
CTAAATGAGGTCGGCACAAA+TGG + chr4_4:81666303-81666322 None:intergenic 45.0%
! TTTGTGCCGACCTCATTTAG+TGG - chr4_4:81666303-81666322 Msa0708190:intron 45.0%
! TTGTGCCGACCTCATTTAGT+GGG - chr4_4:81666304-81666323 Msa0708190:intron 45.0%
CAGCACAAGATGTGCACAAA+TGG + chr4_4:81666363-81666382 None:intergenic 45.0%
TTTGTGCACATCTTGTGCTG+TGG - chr4_4:81666363-81666382 Msa0708190:intron 45.0%
TCAATTTGGGGGGTCAAGTA+AGG + chr4_4:81666657-81666676 None:intergenic 45.0%
AATCAGGCGCAAATCATGCT+TGG - chr4_4:81667118-81667137 Msa0708190:CDS 45.0%
CTCAAACTCAAATTCCTCCC+AGG - chr4_4:81667369-81667388 Msa0708190:CDS 45.0%
!!! TGATTTTGGTGTTTCCTGGG+AGG + chr4_4:81667386-81667405 None:intergenic 45.0%
!!! GGCTGATTTTGGTGTTTCCT+GGG + chr4_4:81667389-81667408 None:intergenic 45.0%
!!! AGGCTGATTTTGGTGTTTCC+TGG + chr4_4:81667390-81667409 None:intergenic 45.0%
! GCATATGAAACTGGCACTGA+AGG + chr4_4:81667410-81667429 None:intergenic 45.0%
GGAACAGCAGCATATGAAAC+TGG + chr4_4:81667419-81667438 None:intergenic 45.0%
CAAATGCCACAACAGCCTAA+AGG - chr4_4:81667482-81667501 Msa0708190:CDS 45.0%
AACAGATGCTGGAGCTACTT+GGG + chr4_4:81667519-81667538 None:intergenic 45.0%
GATGATTGTGGAACAGATGC+TGG + chr4_4:81667530-81667549 None:intergenic 45.0%
GAAGATGAATGAACAGAGGG+TGG + chr4_4:81667572-81667591 None:intergenic 45.0%
!! GGCATTTGAGTTGGATGAAG+TGG + chr4_4:81667599-81667618 None:intergenic 45.0%
GAAAATCCAGGAGTCTGCAA+TGG + chr4_4:81667647-81667666 None:intergenic 45.0%
TAAATTGGCACCAATCGGTG+GGG + chr4_4:81667744-81667763 None:intergenic 45.0%
CTAAATTGGCACCAATCGGT+GGG + chr4_4:81667745-81667764 None:intergenic 45.0%
TGGCTTACATGAAAGATGGG+CGG + chr4_4:81667806-81667825 None:intergenic 45.0%
AACGTAGATCCAACACTAGG+AGG + chr4_4:81667913-81667932 None:intergenic 45.0%
GTGACACTTCAGACGATGTT+AGG - chr4_4:81668184-81668203 Msa0708190:intron 45.0%
! TTATCTTGAGTTGCTGCTCC+TGG - chr4_4:81668305-81668324 Msa0708190:intron 45.0%
! CATTTTCGGAATAAGCCACC+AGG + chr4_4:81668326-81668345 None:intergenic 45.0%
TCGGCTACATGGATCCTAAT+GGG - chr4_4:81668417-81668436 Msa0708190:intron 45.0%
TGTGAAGTGTGAAGTAGCAG+TGG - chr4_4:81668598-81668617 Msa0708190:intron 45.0%
GGACCAAAGAATTGAGACCA+AGG - chr4_4:81668631-81668650 Msa0708190:intron 45.0%
! TGTGTGATGATGCAAAGGAG+TGG - chr4_4:81668664-81668683 Msa0708190:intron 45.0%
! GTGTGATGATGCAAAGGAGT+GGG - chr4_4:81668665-81668684 Msa0708190:intron 45.0%
TTGTCAGCGAAATATGCAGG+TGG - chr4_4:81668704-81668723 Msa0708190:intron 45.0%
AACCAATTAACACCGGAAGG+AGG - chr4_4:81668930-81668949 Msa0708190:intron 45.0%
CTGCTGAAATCAGACCCAAA+TGG + chr4_4:81669217-81669236 None:intergenic 45.0%
TCTGATTTCAGCAGTCAAGC+TGG - chr4_4:81669223-81669242 Msa0708190:intron 45.0%
GAGAATCTAGCACAGCATTC+TGG - chr4_4:81669295-81669314 Msa0708190:intron 45.0%
GGTAGGAGATTTATCTGCTC+CGG + chr4_4:81669519-81669538 None:intergenic 45.0%
GCAGATAAATCTCCTACCTC+CGG - chr4_4:81669521-81669540 Msa0708190:CDS 45.0%
GATTTCTTTGTTCCGGAGGT+AGG + chr4_4:81669536-81669555 None:intergenic 45.0%
TAAGAATCGCACGCACGAAG+CGG - chr4_4:81664991-81665010 Msa0708190:three_prime_UTR 50.0%
!! GAGGTTTTGCATCGGCAATC+AGG - chr4_4:81665026-81665045 Msa0708190:three_prime_UTR 50.0%
!! CTCGCCGCTTACTTGTTTTC+CGG + chr4_4:81665097-81665116 None:intergenic 50.0%
GGAAAACAAGTAAGCGGCGA+GGG - chr4_4:81665096-81665115 Msa0708190:three_prime_UTR 50.0%
!! GGATCTGTTTGGCTTGTTGC+TGG + chr4_4:81665286-81665305 None:intergenic 50.0%
CGACCCCACTTAGTGAGATA+AGG - chr4_4:81665677-81665696 Msa0708190:intron 50.0%
! GGGCATTGCTAGTGATGTGT+CGG - chr4_4:81665781-81665800 Msa0708190:intron 50.0%
TGCTGAGCTAAGGTTGTGCA+AGG - chr4_4:81666065-81666084 Msa0708190:intron 50.0%
TTCACGGACGCTCTTTCAGT+CGG - chr4_4:81666492-81666511 Msa0708190:intron 50.0%
GGCGCAAATCATGCTTGGAA+TGG - chr4_4:81667123-81667142 Msa0708190:CDS 50.0%
AATGGTGCAGTCGCAACAAG+CGG - chr4_4:81667141-81667160 Msa0708190:CDS 50.0%
ATTGGAGCAGGCTGAACACT+TGG + chr4_4:81667308-81667327 None:intergenic 50.0%
TGCACAGGCAATATTGGAGC+AGG + chr4_4:81667320-81667339 None:intergenic 50.0%
GCTCCAATATTGCCTGTGCA+AGG - chr4_4:81667320-81667339 Msa0708190:CDS 50.0%
CCACCTTGCACAGGCAATAT+TGG + chr4_4:81667326-81667345 None:intergenic 50.0%
CCAATATTGCCTGTGCAAGG+TGG - chr4_4:81667323-81667342 Msa0708190:CDS 50.0%
TCTTGTATGCCACCTTGCAC+AGG + chr4_4:81667335-81667354 None:intergenic 50.0%
GGTGGCATACAAGATCAAGC+AGG - chr4_4:81667341-81667360 Msa0708190:CDS 50.0%
!! CTGGCACTGAAGGCTGATTT+TGG + chr4_4:81667400-81667419 None:intergenic 50.0%
TGCAACGAATGTGCAGCTGT+GGG + chr4_4:81667464-81667483 None:intergenic 50.0%
TTGCAACGAATGTGCAGCTG+TGG + chr4_4:81667465-81667484 None:intergenic 50.0%
AGATGCCCTTTAGGCTGTTG+TGG + chr4_4:81667491-81667510 None:intergenic 50.0%
ACAGATGCTGGAGCTACTTG+GGG + chr4_4:81667518-81667537 None:intergenic 50.0%
GAACAGATGCTGGAGCTACT+TGG + chr4_4:81667520-81667539 None:intergenic 50.0%
! ACAGAGGGTGGAGGTATATG+TGG + chr4_4:81667560-81667579 None:intergenic 50.0%
GATGAATGAACAGAGGGTGG+AGG + chr4_4:81667569-81667588 None:intergenic 50.0%
GAGGCAGTTGGCATTTGAGT+TGG + chr4_4:81667608-81667627 None:intergenic 50.0%
CATCAACCATTGCAGACTCC+TGG - chr4_4:81667638-81667657 Msa0708190:intron 50.0%
GTTTGCACTGAAGGTGGTCT+GGG + chr4_4:81667704-81667723 None:intergenic 50.0%
TGGAAGGTTTGCACTGAAGG+TGG + chr4_4:81667710-81667729 None:intergenic 50.0%
GGATGGAAGGTTTGCACTGA+AGG + chr4_4:81667713-81667732 None:intergenic 50.0%
ACCAATCGGTGGGGGATATT+GGG + chr4_4:81667735-81667754 None:intergenic 50.0%
AAATTGGCACCAATCGGTGG+GGG + chr4_4:81667743-81667762 None:intergenic 50.0%
CCTAAATTGGCACCAATCGG+TGG + chr4_4:81667746-81667765 None:intergenic 50.0%
!! CCACCGATTGGTGCCAATTT+AGG - chr4_4:81667743-81667762 Msa0708190:intron 50.0%
CTTACATGAAAGATGGGCGG+AGG + chr4_4:81667803-81667822 None:intergenic 50.0%
GGTGCAAAACCTCCTAGTGT+TGG - chr4_4:81667901-81667920 Msa0708190:intron 50.0%
GGGAACGTAGATCCAACACT+AGG + chr4_4:81667916-81667935 None:intergenic 50.0%
TTGGATCTACGTTCCCACCA+GGG - chr4_4:81667920-81667939 Msa0708190:intron 50.0%
CAGAGCATGACAAACACCCA+TGG + chr4_4:81668039-81668058 None:intergenic 50.0%
TGGGTGTTTGTCATGCTCTG+TGG - chr4_4:81668039-81668058 Msa0708190:intron 50.0%
! CACTTGGTGGGATAAGGCTT+TGG + chr4_4:81668394-81668413 None:intergenic 50.0%
! CAAAGCCTTATCCCACCAAG+TGG - chr4_4:81668392-81668411 Msa0708190:intron 50.0%
CTTATCCCACCAAGTGGTGT+CGG - chr4_4:81668398-81668417 Msa0708190:intron 50.0%
GTCGGCTACATGGATCCTAA+TGG - chr4_4:81668416-81668435 Msa0708190:intron 50.0%
GACATGGCAGACATCCCATT+AGG + chr4_4:81668434-81668453 None:intergenic 50.0%
! CTCCTCCTTCCGGTGTTAAT+TGG + chr4_4:81668935-81668954 None:intergenic 50.0%
TGCTGTGCTAGATTCTCCGA+GGG + chr4_4:81669292-81669311 None:intergenic 50.0%
ATGCTGTGCTAGATTCTCCG+AGG + chr4_4:81669293-81669312 None:intergenic 50.0%
TCCTCAGGGACCATCATCTA+TGG - chr4_4:81669318-81669337 Msa0708190:intron 50.0%
! ACCATAGATGATGGTCCCTG+AGG + chr4_4:81669322-81669341 None:intergenic 50.0%
CATGCAGTTGACACCAGACA+TGG - chr4_4:81669458-81669477 Msa0708190:intron 50.0%
GTTGACACCAGACATGGAGA+AGG - chr4_4:81669464-81669483 Msa0708190:intron 50.0%
AGCAATGCCTTCTCCATGTC+TGG + chr4_4:81669474-81669493 None:intergenic 50.0%
AAGAATCGCACGCACGAAGC+GGG - chr4_4:81664992-81665011 Msa0708190:three_prime_UTR 55.0%
GTTTACGACGGCAAAGGCTG+CGG - chr4_4:81665048-81665067 Msa0708190:three_prime_UTR 55.0%
CGACAACGAGGTCTTCGCAA+TGG - chr4_4:81665071-81665090 Msa0708190:three_prime_UTR 55.0%
AACGAGGTCTTCGCAATGGC+CGG - chr4_4:81665075-81665094 Msa0708190:three_prime_UTR 55.0%
CGGAAAACAAGTAAGCGGCG+AGG - chr4_4:81665095-81665114 Msa0708190:three_prime_UTR 55.0%
CGAGGGTTTATCAGCGAACC+TGG - chr4_4:81665113-81665132 Msa0708190:three_prime_UTR 55.0%
GGTTTATCAGCGAACCTGGC+CGG - chr4_4:81665117-81665136 Msa0708190:three_prime_UTR 55.0%
GATTCTTCGACATTCCGGCC+AGG + chr4_4:81665134-81665153 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr4_4:81665671-81665690 None:intergenic 55.0%
GGTGCGGTATTTGTGCAGCT+AGG - chr4_4:81665843-81665862 Msa0708190:intron 55.0%
! GTGTTGCTAGAAAGGGGCTG+TGG - chr4_4:81666103-81666122 Msa0708190:intron 55.0%
!! GGTCTTTGTGTCGGCTGTAC+TGG + chr4_4:81667287-81667306 None:intergenic 55.0%
TGGGGAGTCAGATGCCCTTT+AGG + chr4_4:81667500-81667519 None:intergenic 55.0%
AATGCCAACTGCCTCGAGTC+AGG - chr4_4:81667613-81667632 Msa0708190:intron 55.0%
GGTTTGCACTGAAGGTGGTC+TGG + chr4_4:81667705-81667724 None:intergenic 55.0%
TGGGGGATATTGGGGATGGA+AGG + chr4_4:81667726-81667745 None:intergenic 55.0%
CCAATCGGTGGGGGATATTG+GGG + chr4_4:81667734-81667753 None:intergenic 55.0%
CACCAATCGGTGGGGGATAT+TGG + chr4_4:81667736-81667755 None:intergenic 55.0%
CATGAAAGATGGGCGGAGGA+AGG + chr4_4:81667799-81667818 None:intergenic 55.0%
GTTGGATCTACGTTCCCACC+AGG - chr4_4:81667919-81667938 Msa0708190:intron 55.0%
! TCTTGAGTTGCTGCTCCTGG+TGG - chr4_4:81668308-81668327 Msa0708190:intron 55.0%
! CGACACCACTTGGTGGGATA+AGG + chr4_4:81668400-81668419 None:intergenic 55.0%
TGTAGCCGACACCACTTGGT+GGG + chr4_4:81668406-81668425 None:intergenic 55.0%
ATGTAGCCGACACCACTTGG+TGG + chr4_4:81668407-81668426 None:intergenic 55.0%
!! ACCAAGTGGTGTCGGCTACA+TGG - chr4_4:81668406-81668425 Msa0708190:intron 55.0%
TCCATGTAGCCGACACCACT+TGG + chr4_4:81668410-81668429 None:intergenic 55.0%
AGAGGGTCTTCTTGGATGCC+TGG - chr4_4:81669265-81669284 Msa0708190:intron 55.0%
TTCTTGGATGCCTGGTCCCT+CGG - chr4_4:81669273-81669292 Msa0708190:intron 55.0%
AGCACAGCATTCTGGTCCTC+AGG - chr4_4:81669303-81669322 Msa0708190:intron 55.0%
GCACAGCATTCTGGTCCTCA+GGG - chr4_4:81669304-81669323 Msa0708190:intron 55.0%
! GTGCTGCTAATCAGCCTCCT+CGG - chr4_4:81669356-81669375 Msa0708190:intron 55.0%
ATAATTACCGCAGGAGGCCG+AGG + chr4_4:81669376-81669395 None:intergenic 55.0%
!! GGAGAAGGCATTGCTTCAGC+AGG - chr4_4:81669479-81669498 Msa0708190:CDS 55.0%
GCAGGTCATGAGTCTCACAC+CGG - chr4_4:81669497-81669516 Msa0708190:CDS 55.0%
GGGGGGACTTCCTCATACAA+AGG - chr4_4:81669795-81669814 Msa0708190:five_prime_UTR 55.0%
! TGGTTGATGCGCCTGACTCG+AGG + chr4_4:81667627-81667646 None:intergenic 60.0%
GGTGGCAATGGTGGTTGCAG+AGG + chr4_4:81667677-81667696 None:intergenic 60.0%
ACTGAAGGTGGTCTGGGCTG+CGG + chr4_4:81667698-81667717 None:intergenic 60.0%
TCGGTGGGGGATATTGGGGA+TGG + chr4_4:81667730-81667749 None:intergenic 60.0%
CCCCAATATCCCCCACCGAT+TGG - chr4_4:81667731-81667750 Msa0708190:intron 60.0%
ATCTACGTTCCCACCAGGGC+AGG - chr4_4:81667924-81667943 Msa0708190:intron 60.0%
GTAGTAGTGCCTGCCCTGGT+GGG + chr4_4:81667936-81667955 None:intergenic 60.0%
! CTTGGTAGTAGTGCCTGCCC+TGG + chr4_4:81667940-81667959 None:intergenic 60.0%
GCTAGATTCTCCGAGGGACC+AGG + chr4_4:81669286-81669305 None:intergenic 60.0%
AATCGCACGCACGAAGCGGG+AGG - chr4_4:81664995-81665014 Msa0708190:three_prime_UTR 65.0%
ATCGCACGCACGAAGCGGGA+GGG - chr4_4:81664996-81665015 Msa0708190:three_prime_UTR 65.0%
GAAGCGGGAGGGACTGTGAG+AGG - chr4_4:81665007-81665026 Msa0708190:three_prime_UTR 65.0%
CAAAGGCTGCGGCGACAACG+AGG - chr4_4:81665059-81665078 Msa0708190:three_prime_UTR 65.0%
! TGCGCCTGACTCGAGGCAGT+TGG + chr4_4:81667620-81667639 None:intergenic 65.0%
GGTAGTAGTGCCTGCCCTGG+TGG + chr4_4:81667937-81667956 None:intergenic 65.0%
ATTACCGCAGGAGGCCGAGG+AGG + chr4_4:81669373-81669392 None:intergenic 65.0%
CTGGGCTGCGGTGGCAATGG+TGG + chr4_4:81667686-81667705 None:intergenic 70.0%
GGTCTGGGCTGCGGTGGCAA+TGG + chr4_4:81667689-81667708 None:intergenic 70.0%
GAAGGTGGTCTGGGCTGCGG+TGG + chr4_4:81667695-81667714 None:intergenic 70.0%
TCAGCCTCCTCGGCCTCCTG+CGG - chr4_4:81669366-81669385 Msa0708190:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 81664949 81669873 81664949 ID=Msa0708190;Name=Msa0708190
chr4_4 mRNA 81664949 81669873 81664949 ID=Msa0708190-mRNA-1;Parent=Msa0708190;Name=Msa0708190-mRNA-1;_AED=0.01;_eAED=0.01;_QI=141|1|1|1|0.83|1|7|283|395
chr4_4 exon 81664949 81665357 81664949 ID=Msa0708190-mRNA-1:exon:26784;Parent=Msa0708190-mRNA-1
chr4_4 exon 81665435 81665620 81665435 ID=Msa0708190-mRNA-1:exon:26783;Parent=Msa0708190-mRNA-1
chr4_4 exon 81666835 81666924 81666835 ID=Msa0708190-mRNA-1:exon:26782;Parent=Msa0708190-mRNA-1
chr4_4 exon 81667005 81667580 81667005 ID=Msa0708190-mRNA-1:exon:26781;Parent=Msa0708190-mRNA-1
chr4_4 exon 81667660 81667698 81667660 ID=Msa0708190-mRNA-1:exon:26780;Parent=Msa0708190-mRNA-1
chr4_4 exon 81669479 81669556 81669479 ID=Msa0708190-mRNA-1:exon:26779;Parent=Msa0708190-mRNA-1
chr4_4 exon 81669640 81669873 81669640 ID=Msa0708190-mRNA-1:exon:26778;Parent=Msa0708190-mRNA-1
chr4_4 five_prime_UTR 81669733 81669873 81669733 ID=Msa0708190-mRNA-1:five_prime_utr;Parent=Msa0708190-mRNA-1
chr4_4 CDS 81669640 81669732 81669640 ID=Msa0708190-mRNA-1:cds;Parent=Msa0708190-mRNA-1
chr4_4 CDS 81669479 81669556 81669479 ID=Msa0708190-mRNA-1:cds;Parent=Msa0708190-mRNA-1
chr4_4 CDS 81667660 81667698 81667660 ID=Msa0708190-mRNA-1:cds;Parent=Msa0708190-mRNA-1
chr4_4 CDS 81667005 81667580 81667005 ID=Msa0708190-mRNA-1:cds;Parent=Msa0708190-mRNA-1
chr4_4 CDS 81666835 81666924 81666835 ID=Msa0708190-mRNA-1:cds;Parent=Msa0708190-mRNA-1
chr4_4 CDS 81665435 81665620 81665435 ID=Msa0708190-mRNA-1:cds;Parent=Msa0708190-mRNA-1
chr4_4 CDS 81665232 81665357 81665232 ID=Msa0708190-mRNA-1:cds;Parent=Msa0708190-mRNA-1
chr4_4 three_prime_UTR 81664949 81665231 81664949 ID=Msa0708190-mRNA-1:three_prime_utr;Parent=Msa0708190-mRNA-1
Gene Sequence

>Msa0708190

ATGGCCGGAAAACAAGTAAGCGGCGAGGGTTTATCAGCGAACCTGGCCGGAATGTCGAAGAATCAACTTTACGATATAATGTCTCAGATGAAGAATTTGATCGAACAGAACCAGCAACAAGCCAAACAGATCCTCATCCAAAACCCCATGTTAACCAAAGCACTTTTCCAGGCGCAAATCATGCTTGGAATGGTGCAGTCGCAACAAGCGGTTCCAAAAGTTCAACCAATAGCTCCTCAAAACAATCAGCAACCAGTACAGCCGACACAAAGACCAAGTGTTCAGCCTGCTCCAATATTGCCTGTGCAAGGTGGCATACAAGATCAAGCAGGTGTATCTCAAACTCAAATTCCTCCCAGGAAACACCAAAATCAGCCTTCAGTGCCAGTTTCATATGCTGCTGTTCCTACAACGAGTCATCAATCTCAACCCACAGCTGCACATTCGTTGCAAATGCCACAACAGCCTAAAGGGCATCTGACTCCCCAAGTAGCTCCAGCATCTGTTCCACAATCATCACAACTTCCACATATACCTCCACCCTCTGTTCATTCATCTTCACAGCCACTTCATCCAACTCAAATGCCAACTGCCTCGAGTCAGGCGCATCAACCATTGCAGACTCCTGGATTTTCACATATGCCTCTGCAACCACCATTGCCACCGCAGCCCAGACCACCTTCAGTGCAAACCTTCCATCCCCAATATCCCCCACCGATTGGTGCCAATTTAGGTTTTCAACATGCTGGTGGTGCTTCTCACAACCTTCCTCCGCCCATCTTTCATGCTGGTGCAAAACCTCCTAGTGTTGGATCTACGTTCCCACCAGGGCAGGCACTACTACCAAGTCAACAATCATCTCAGTCATCTTATCAGGTTGGAAATATACCATTTGGGTCTGATTTCAGCAGTCAAGCTGGAAATGCAATGCAAATTGATAGAGGGTCTTCTTGGATGCCTGGTCCCTCGGAGAATCTAGCACAGCATTCTGGTCCTCAGGGACCATCATCTATGGTTTCTGCTCAGATCGGTGCTGCTAATCAGCCTCCTCGGCCTCCTGCGTTGACACCAGACATGGAGAAGGCATTGCTTCAGCAGGTCATGAGTCTCACACCGGAGCAGATAAATCTCCTACCTCCGGAACAAAGAAATCAAGTGCTGCAACTGCAGCTGATGTTGCGTAAATGA
Protein sequence

>Msa0708190

MAGKQVSGEGLSANLAGMSKNQLYDIMSQMKNLIEQNQQQAKQILIQNPMLTKALFQAQIMLGMVQSQQAVPKVQPIAPQNNQQPVQPTQRPSVQPAPILPVQGGIQDQAGVSQTQIPPRKHQNQPSVPVSYAAVPTTSHQSQPTAAHSLQMPQQPKGHLTPQVAPASVPQSSQLPHIPPPSVHSSSQPLHPTQMPTASSQAHQPLQTPGFSHMPLQPPLPPQPRPPSVQTFHPQYPPPIGANLGFQHAGGASHNLPPPIFHAGAKPPSVGSTFPPGQALLPSQQSSQSSYQVGNIPFGSDFSSQAGNAMQIDRGSSWMPGPSENLAQHSGPQGPSSMVSAQIGAANQPPRPPALTPDMEKALLQQVMSLTPEQINLLPPEQRNQVLQLQLMLRK*