AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0708050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0708050 MtrunA17_Chr8g0391061 98.481 395 6 0 1 395 1 395 0.0 742
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0708050 AT1G73840.1 48.418 411 173 17 1 395 1 388 2.87e-79 249
Msa0708050 AT1G73840.2 43.143 350 161 15 61 395 1 327 4.12e-44 156

Find 144 sgRNAs with CRISPR-Local

Find 377 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGGCACTGAAGGCTGATTT+TGG 0.217216 4_4:+81505984 None:intergenic
CCACCGATTGGTGCCAATTT+AGG 0.222463 4_4:-81505638 Msa0708050:CDS
GGAGCTATTGGTTGAACTTT+TGG 0.239042 4_4:+81506136 None:intergenic
ATCTCCCACTCCTTTCAATT+TGG 0.243860 4_4:-81503713 Msa0708050:three_prime_UTR
CCACCTTGCACAGGCAATAT+TGG 0.272411 4_4:+81506058 None:intergenic
AGCATGTTGAAAACCTAAAT+TGG 0.303611 4_4:+81505625 None:intergenic
GGTTTGCACTGAAGGTGGTC+TGG 0.310505 4_4:+81505679 None:intergenic
GGATCTGTTTGGCTTGTTGC+TGG 0.311501 4_4:+81508098 None:intergenic
CTTTGGTTAACATGGGGTTT+TGG 0.322191 4_4:+81508071 None:intergenic
TGGGGAGTCAGATGCCCTTT+AGG 0.329475 4_4:+81505884 None:intergenic
CAGGTTGGAAATATACCATT+TGG 0.354659 4_4:-81504126 Msa0708050:CDS
ATCATCTCAGTCATCTTATC+AGG 0.369211 4_4:-81505415 Msa0708050:intron
AAGTTGATTCTTCGACATTC+CGG 0.379339 4_4:+81508245 None:intergenic
GAGAATCTAGCACAGCATTC+TGG 0.381170 4_4:-81504030 Msa0708050:CDS
GGTCTTTGTGTCGGCTGTAC+TGG 0.384854 4_4:+81506097 None:intergenic
AAATTGATAGAGGGTCTTCT+TGG 0.393175 4_4:-81504068 Msa0708050:CDS
AGCACTTGATTTCTTTGTTC+CGG 0.406131 4_4:+81503785 None:intergenic
TCCTCAGGGACCATCATCTA+TGG 0.406393 4_4:-81504007 Msa0708050:CDS
GTTTGCACTGAAGGTGGTCT+GGG 0.415268 4_4:+81505680 None:intergenic
TTCTTGGATGCCTGGTCCCT+CGG 0.417764 4_4:-81504052 Msa0708050:CDS
AGCACAGCATTCTGGTCCTC+AGG 0.420622 4_4:-81504022 Msa0708050:CDS
AATGCCAACTGCCTCGAGTC+AGG 0.424620 4_4:-81505768 Msa0708050:CDS
AGAGGGTCTTCTTGGATGCC+TGG 0.426008 4_4:-81504060 Msa0708050:CDS
GGAACAGCAGCATATGAAAC+TGG 0.426563 4_4:+81505965 None:intergenic
GGTCTGGGCTGCGGTGGCAA+TGG 0.431160 4_4:+81505695 None:intergenic
AGCAATGCCTTCTCCATGTC+TGG 0.434431 4_4:+81503854 None:intergenic
ATATAAATCTTCAATGAGAT+TGG 0.437556 4_4:+81503494 None:intergenic
AGAAACCTGGAAAAGTGCTT+TGG 0.437758 4_4:+81508054 None:intergenic
TGAGATTGATGACTCGTTGT+AGG 0.439418 4_4:+81505944 None:intergenic
TATTTGGCTTACATGAAAGA+TGG 0.445107 4_4:+81505574 None:intergenic
AAATGCCACAACAGCCTAAA+GGG 0.450959 4_4:-81505898 Msa0708050:CDS
GGATGGAAGGTTTGCACTGA+AGG 0.452928 4_4:+81505671 None:intergenic
AACAGATGCTGGAGCTACTT+GGG 0.459345 4_4:+81505865 None:intergenic
AGGTTGGAAATATACCATTT+GGG 0.465872 4_4:-81504125 Msa0708050:CDS
GAACAGATGCTGGAGCTACT+TGG 0.467900 4_4:+81505864 None:intergenic
GAGGCAGTTGGCATTTGAGT+TGG 0.469452 4_4:+81505776 None:intergenic
CGAGGGTTTATCAGCGAACC+TGG 0.474127 4_4:-81508268 Msa0708050:CDS
CATCAACCATTGCAGACTCC+TGG 0.476133 4_4:-81505743 Msa0708050:CDS
CTGGGCTGCGGTGGCAATGG+TGG 0.483339 4_4:+81505698 None:intergenic
AACGAGGTCTTCGCAATGGC+CGG 0.494684 4_4:-81508306 Msa0708050:exon
ACTGAAGGTGGTCTGGGCTG+CGG 0.496060 4_4:+81505686 None:intergenic
CTGTAAAGCTCTACATCCAC+TGG 0.498184 4_4:+81508435 None:intergenic
GTAGTAGTGCCTGCCCTGGT+GGG 0.503872 4_4:+81505448 None:intergenic
CAAATGCCACAACAGCCTAA+AGG 0.507130 4_4:-81505899 Msa0708050:CDS
AATGCAATGCAAATTGATAG+AGG 0.513025 4_4:-81504078 Msa0708050:CDS
GACTGAGATGATTGTTGACT+TGG 0.515162 4_4:+81505426 None:intergenic
TCTGATTTCAGCAGTCAAGC+TGG 0.516591 4_4:-81504102 Msa0708050:CDS
GCTAGATTCTCCGAGGGACC+AGG 0.516688 4_4:+81504042 None:intergenic
ACAGAGGGTGGAGGTATATG+TGG 0.520018 4_4:+81505824 None:intergenic
CGATATAATGTCTCAGATGA+AGG 0.521213 4_4:-81508220 Msa0708050:intron
ATTTGGCTTACATGAAAGAT+GGG 0.523822 4_4:+81505575 None:intergenic
GATGATTGTGGAACAGATGC+TGG 0.524572 4_4:+81505854 None:intergenic
ATTGGAGCAGGCTGAACACT+TGG 0.524643 4_4:+81506076 None:intergenic
AGATGCCCTTTAGGCTGTTG+TGG 0.524650 4_4:+81505893 None:intergenic
GGCATTTGAGTTGGATGAAG+TGG 0.526366 4_4:+81505785 None:intergenic
CCTAAATTGGCACCAATCGG+TGG 0.528144 4_4:+81505638 None:intergenic
AAGAATCGCACGCACGAAGC+GGG 0.528277 4_4:-81508389 Msa0708050:five_prime_UTR
AAACCTAAATTGGCACCAAT+CGG 0.529814 4_4:+81505635 None:intergenic
CTTGGTAGTAGTGCCTGCCC+TGG 0.530835 4_4:+81505444 None:intergenic
TGCACAGGCAATATTGGAGC+AGG 0.531217 4_4:+81506064 None:intergenic
GGTAGTAGTGCCTGCCCTGG+TGG 0.531403 4_4:+81505447 None:intergenic
GTTGGATCTACGTTCCCACC+AGG 0.534207 4_4:-81505462 Msa0708050:CDS
AATCAGGCGCAAATCATGCT+TGG 0.534517 4_4:-81506263 Msa0708050:intron
GTTTACGACGGCAAAGGCTG+CGG 0.534823 4_4:-81508333 Msa0708050:five_prime_UTR
GGTAGGAGATTTATCTGCTC+CGG 0.535490 4_4:+81503809 None:intergenic
GAAAAGTGCTTTGGTTAACA+TGG 0.539131 4_4:+81508063 None:intergenic
TAACCCTTGACCTTTGTATG+AGG 0.542651 4_4:+81503520 None:intergenic
CTCAAACTCAAATTCCTCCC+AGG 0.544437 4_4:-81506012 Msa0708050:CDS
GGTTTATCAGCGAACCTGGC+CGG 0.544748 4_4:-81508264 Msa0708050:CDS
ATCTACGTTCCCACCAGGGC+AGG 0.545822 4_4:-81505457 Msa0708050:CDS
GATTTCTTTGTTCCGGAGGT+AGG 0.546980 4_4:+81503792 None:intergenic
GCATATGAAACTGGCACTGA+AGG 0.547468 4_4:+81505974 None:intergenic
TCTTGTATGCCACCTTGCAC+AGG 0.548368 4_4:+81506049 None:intergenic
GGAGAAGGCATTGCTTCAGC+AGG 0.548457 4_4:-81503846 Msa0708050:CDS
TTGCAACGAATGTGCAGCTG+TGG 0.549837 4_4:+81505919 None:intergenic
GTTGACTGCAATTAAATCAC+TGG 0.550381 4_4:-81503587 Msa0708050:three_prime_UTR
TCTATTATTGATGCTCAAAG+TGG 0.552685 4_4:-81503680 Msa0708050:three_prime_UTR
TACACCAAATTGAAAGGAGT+GGG 0.555717 4_4:+81503709 None:intergenic
AGAATCTACACCAAATTGAA+AGG 0.558415 4_4:+81503703 None:intergenic
GAAGGTGGTCTGGGCTGCGG+TGG 0.560378 4_4:+81505689 None:intergenic
GCAGATAAATCTCCTACCTC+CGG 0.560675 4_4:-81503804 Msa0708050:CDS
CATGAAAGATGGGCGGAGGA+AGG 0.566167 4_4:+81505585 None:intergenic
AAAAGTGCTTTGGTTAACAT+GGG 0.566181 4_4:+81508064 None:intergenic
ATAATTACCGCAGGAGGCCG+AGG 0.566844 4_4:+81503952 None:intergenic
GCTCCAATATTGCCTGTGCA+AGG 0.568072 4_4:-81506061 Msa0708050:CDS
CTAAATTGGCACCAATCGGT+GGG 0.568515 4_4:+81505639 None:intergenic
ACTTCCTCATACAAAGGTCA+AGG 0.572934 4_4:-81503524 Msa0708050:three_prime_UTR
CATGCAGTTGACACCAGACA+TGG 0.573544 4_4:-81503867 Msa0708050:intron
GATGAATGAACAGAGGGTGG+AGG 0.579071 4_4:+81505815 None:intergenic
GGTGCAAAACCTCCTAGTGT+TGG 0.579641 4_4:-81505480 Msa0708050:CDS
TGAGCAGAAACCATAGATGA+TGG 0.580733 4_4:+81503997 None:intergenic
TGCGCCTGACTCGAGGCAGT+TGG 0.581868 4_4:+81505764 None:intergenic
GATTCTTCGACATTCCGGCC+AGG 0.582129 4_4:+81508250 None:intergenic
GTGCTGCTAATCAGCCTCCT+CGG 0.587990 4_4:-81503969 Msa0708050:CDS
GGCGCAAATCATGCTTGGAA+TGG 0.588794 4_4:-81506258 Msa0708050:CDS
TCTATGGTTTCTGCTCAGAT+CGG 0.590710 4_4:-81503991 Msa0708050:CDS
TGGAAGGTTTGCACTGAAGG+TGG 0.591348 4_4:+81505674 None:intergenic
AATCGCACGCACGAAGCGGG+AGG 0.595099 4_4:-81508386 Msa0708050:five_prime_UTR
TGTGGAAGTTGTGATGATTG+TGG 0.596173 4_4:+81505842 None:intergenic
AATCAGGTTTACGACGGCAA+AGG 0.598557 4_4:-81508339 Msa0708050:five_prime_UTR
ATCGCACGCACGAAGCGGGA+GGG 0.599016 4_4:-81508385 Msa0708050:five_prime_UTR
GGAAAACAAGTAAGCGGCGA+GGG 0.599552 4_4:-81508285 Msa0708050:CDS
TGAACACTTGGTCTTTGTGT+CGG 0.602044 4_4:+81506088 None:intergenic
TCAGCCTCCTCGGCCTCCTG+CGG 0.602819 4_4:-81503959 Msa0708050:intron
CTGCTGAAATCAGACCCAAA+TGG 0.603135 4_4:+81504111 None:intergenic
GCACAGCATTCTGGTCCTCA+GGG 0.603604 4_4:-81504021 Msa0708050:CDS
AGAGGCATATGTGAAAATCC+AGG 0.603771 4_4:+81505725 None:intergenic
AAATTGGCACCAATCGGTGG+GGG 0.604689 4_4:+81505641 None:intergenic
TAAGAATCGCACGCACGAAG+CGG 0.605399 4_4:-81508390 Msa0708050:five_prime_UTR
TAAATTGGCACCAATCGGTG+GGG 0.616828 4_4:+81505640 None:intergenic
ATGCAATGCAAATTGATAGA+GGG 0.619745 4_4:-81504077 Msa0708050:CDS
TGGTTGATGCGCCTGACTCG+AGG 0.620870 4_4:+81505757 None:intergenic
CTTACATGAAAGATGGGCGG+AGG 0.620985 4_4:+81505581 None:intergenic
CTACACCAAATTGAAAGGAG+TGG 0.621012 4_4:+81503708 None:intergenic
GAAGCGGGAGGGACTGTGAG+AGG 0.625226 4_4:-81508374 Msa0708050:five_prime_UTR
ACAGATGCTGGAGCTACTTG+GGG 0.629033 4_4:+81505866 None:intergenic
TTCACAATAATTACCGCAGG+AGG 0.629072 4_4:+81503946 None:intergenic
ACTTGATTTCTTTGTTCCGG+AGG 0.637553 4_4:+81503788 None:intergenic
GGTGGCAATGGTGGTTGCAG+AGG 0.638987 4_4:+81505707 None:intergenic
CGACAACGAGGTCTTCGCAA+TGG 0.639266 4_4:-81508310 Msa0708050:exon
AAAGTGCTTTGGTTAACATG+GGG 0.639464 4_4:+81508065 None:intergenic
GGTGGCATACAAGATCAAGC+AGG 0.642519 4_4:-81506040 Msa0708050:CDS
CTTCCTCATACAAAGGTCAA+GGG 0.646668 4_4:-81503523 Msa0708050:three_prime_UTR
AACGTAGATCCAACACTAGG+AGG 0.646821 4_4:+81505471 None:intergenic
TGCAACGAATGTGCAGCTGT+GGG 0.650445 4_4:+81505920 None:intergenic
TGCTGTGCTAGATTCTCCGA+GGG 0.654352 4_4:+81504036 None:intergenic
ATTACCGCAGGAGGCCGAGG+AGG 0.656048 4_4:+81503955 None:intergenic
TGGCTTACATGAAAGATGGG+CGG 0.666783 4_4:+81505578 None:intergenic
GAAGATGAATGAACAGAGGG+TGG 0.672837 4_4:+81505812 None:intergenic
GGGAACGTAGATCCAACACT+AGG 0.673989 4_4:+81505468 None:intergenic
TTGGATCTACGTTCCCACCA+GGG 0.674955 4_4:-81505461 Msa0708050:CDS
ATCGGCAATCAGGTTTACGA+CGG 0.675352 4_4:-81508345 Msa0708050:five_prime_UTR
ATGGCCGGAAAACAAGTAAG+CGG 0.675868 4_4:-81508291 Msa0708050:CDS
TGTGAAGATGAATGAACAGA+GGG 0.681536 4_4:+81505809 None:intergenic
AATGGTGCAGTCGCAACAAG+CGG 0.683239 4_4:-81506240 Msa0708050:intron
CGGAAAACAAGTAAGCGGCG+AGG 0.688386 4_4:-81508286 Msa0708050:CDS
GTTGACACCAGACATGGAGA+AGG 0.688888 4_4:-81503861 Msa0708050:CDS
ATGCTGTGCTAGATTCTCCG+AGG 0.691552 4_4:+81504035 None:intergenic
CCAATATTGCCTGTGCAAGG+TGG 0.694856 4_4:-81506058 Msa0708050:CDS
CAAAGGCTGCGGCGACAACG+AGG 0.695329 4_4:-81508322 Msa0708050:five_prime_UTR
GAAAATCCAGGAGTCTGCAA+TGG 0.697860 4_4:+81505737 None:intergenic
GCAGGTCATGAGTCTCACAC+CGG 0.699959 4_4:-81503828 Msa0708050:CDS
ACCATAGATGATGGTCCCTG+AGG 0.710726 4_4:+81504006 None:intergenic
CTGTGAAGATGAATGAACAG+AGG 0.739097 4_4:+81505808 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTTAATATTTCACAA+TGG - chr4_4:81504250-81504269 Msa0708050:intron 10.0%
!!! TTAATTTCTAGATACAAAAT+CGG + chr4_4:81504010-81504029 None:intergenic 15.0%
!!! AATATTAAATTTTTCAAGCA+GGG + chr4_4:81504244-81504263 None:intergenic 15.0%
!!! AAATATTAAATTTTTCAAGC+AGG + chr4_4:81504245-81504264 None:intergenic 15.0%
!!! AAATATTTTTGTTTTTGCAA+AGG + chr4_4:81504942-81504961 None:intergenic 15.0%
!! AAATTGTAAACTGAAATATT+TGG + chr4_4:81506351-81506370 None:intergenic 15.0%
!!! TATTTATTGATGAAATTTTC+AGG - chr4_4:81506401-81506420 Msa0708050:intron 15.0%
!! TATACAAACAAAATTATCTT+TGG - chr4_4:81506753-81506772 Msa0708050:intron 15.0%
!!! TTCAATATATATTTTTGACA+TGG + chr4_4:81506975-81506994 None:intergenic 15.0%
!! AAGAAAAATTTAGATTAGAT+GGG - chr4_4:81508356-81508375 Msa0708050:five_prime_UTR 15.0%
!! ATTTAATATTTCACAATGGA+TGG - chr4_4:81504254-81504273 Msa0708050:intron 20.0%
!! TTAATGATAAAAAATCGATC+TGG + chr4_4:81504471-81504490 None:intergenic 20.0%
!!! TAATGTTTCTATCTATTTCA+CGG - chr4_4:81505001-81505020 Msa0708050:intron 20.0%
!!! AAGTTAGATTTTACTTTAGA+CGG - chr4_4:81505053-81505072 Msa0708050:intron 20.0%
!!! AAAATTATCTTTGGTTTACA+TGG - chr4_4:81506762-81506781 Msa0708050:intron 20.0%
!! TTATGTCAATATGAAGATTA+CGG - chr4_4:81507390-81507409 Msa0708050:intron 20.0%
!! ACAAGTAAATCTAAGTAAAA+TGG - chr4_4:81507683-81507702 Msa0708050:intron 20.0%
!! GAAGAAAAATTTAGATTAGA+TGG - chr4_4:81508355-81508374 Msa0708050:five_prime_UTR 20.0%
!! AGAAAAATTTAGATTAGATG+GGG - chr4_4:81508357-81508376 Msa0708050:five_prime_UTR 20.0%
!! ATATAAATCTTCAATGAGAT+TGG + chr4_4:81508415-81508434 None:intergenic 20.0%
!! TCTGTTTTGTATCTATATGT+CGG - chr4_4:81503964-81503983 Msa0708050:CDS 25.0%
! CTAGAAATACATAAGAGAAA+CGG - chr4_4:81504097-81504116 Msa0708050:CDS 25.0%
! AGATTTAGAGATTAATGAGT+TGG - chr4_4:81504127-81504146 Msa0708050:intron 25.0%
!! TAATGAGTTGGATCTAAATA+TGG - chr4_4:81504139-81504158 Msa0708050:intron 25.0%
! TGGTTTATGATAGAACATTA+TGG - chr4_4:81504159-81504178 Msa0708050:intron 25.0%
!!! TTATAGCTTTGGAGTTTTAA+GGG - chr4_4:81504329-81504348 Msa0708050:intron 25.0%
!!! TTTTTTATCATTAATGAGCG+AGG - chr4_4:81504477-81504496 Msa0708050:intron 25.0%
! GTAGTCTATGTATAACATTT+AGG - chr4_4:81504650-81504669 Msa0708050:intron 25.0%
!!! TATGTATAACATTTAGGTTG+AGG - chr4_4:81504656-81504675 Msa0708050:intron 25.0%
!!! ATGTATAACATTTAGGTTGA+GGG - chr4_4:81504657-81504676 Msa0708050:intron 25.0%
! TATATTGATGGAAGTTTGAT+TGG - chr4_4:81504726-81504745 Msa0708050:intron 25.0%
! ATATTGATGGAAGTTTGATT+GGG - chr4_4:81504727-81504746 Msa0708050:intron 25.0%
!! TTGTAGATTGTGTTATGTTT+TGG - chr4_4:81504759-81504778 Msa0708050:intron 25.0%
!! TGTAGATTGTGTTATGTTTT+GGG - chr4_4:81504760-81504779 Msa0708050:intron 25.0%
!!! CTACACATGAAGATTTTTTT+AGG - chr4_4:81504965-81504984 Msa0708050:intron 25.0%
! GTGAAATAGATAGAAACATT+AGG + chr4_4:81505002-81505021 None:intergenic 25.0%
! AAGTAAAATCTAACTTCAGA+GGG + chr4_4:81505049-81505068 None:intergenic 25.0%
! AAAGTAAAATCTAACTTCAG+AGG + chr4_4:81505050-81505069 None:intergenic 25.0%
! TAGATTTGCATGCTAATAAA+TGG - chr4_4:81505734-81505753 Msa0708050:CDS 25.0%
! TTTAGACTTGAAAACTATGT+TGG - chr4_4:81506536-81506555 Msa0708050:intron 25.0%
! GTGGCATCAAAATATATTAT+TGG - chr4_4:81506583-81506602 Msa0708050:intron 25.0%
! CAACTCAAGATAAAAAACTA+TGG + chr4_4:81506823-81506842 None:intergenic 25.0%
!!! TGTTTGTAGTCTTTAATTTG+GGG + chr4_4:81507052-81507071 None:intergenic 25.0%
!! CTGTTTGTAGTCTTTAATTT+GGG + chr4_4:81507053-81507072 None:intergenic 25.0%
! ATTTCTGTCAAACAAAAAGA+AGG - chr4_4:81507304-81507323 Msa0708050:intron 25.0%
! TATGTCAATATGAAGATTAC+GGG - chr4_4:81507391-81507410 Msa0708050:intron 25.0%
! TAAAATCACCAAAATCAACT+TGG + chr4_4:81507593-81507612 None:intergenic 25.0%
! TAAAATCACCAAAATCAACT+TGG + chr4_4:81507593-81507612 None:intergenic 25.0%
! GAAAAATTTAGATTAGATGG+GGG - chr4_4:81508358-81508377 Msa0708050:five_prime_UTR 25.0%
! AAAAATTTAGATTAGATGGG+GGG - chr4_4:81508359-81508378 Msa0708050:five_prime_UTR 25.0%
CTGAATAGAGAAAAACGAAA+GGG + chr4_4:81503771-81503790 None:intergenic 30.0%
TCTGAATAGAGAAAAACGAA+AGG + chr4_4:81503772-81503791 None:intergenic 30.0%
!! AAAAGTGCTTTGGTTAACAT+GGG + chr4_4:81503845-81503864 None:intergenic 30.0%
GTTGTATCGTTGTTATAGTT+TGG - chr4_4:81503922-81503941 Msa0708050:intron 30.0%
CGTTTCTCTTATGTATTTCT+AGG + chr4_4:81504099-81504118 None:intergenic 30.0%
!! GTAAATCCACTAGCTTATTT+TGG - chr4_4:81504276-81504295 Msa0708050:intron 30.0%
!!! TAGCTTATTTTGGAACCATA+GGG - chr4_4:81504286-81504305 Msa0708050:intron 30.0%
!!! GTTATAGCTTTGGAGTTTTA+AGG - chr4_4:81504328-81504347 Msa0708050:intron 30.0%
! AAGGGATTTTTGTGATTCTT+CGG - chr4_4:81504347-81504366 Msa0708050:intron 30.0%
ATAGTTTCTGTTGTAGGATT+AGG - chr4_4:81504429-81504448 Msa0708050:intron 30.0%
!! TGTATAACATTTAGGTTGAG+GGG - chr4_4:81504658-81504677 Msa0708050:intron 30.0%
GTAACGAGGTAATATATTGA+TGG - chr4_4:81504714-81504733 Msa0708050:intron 30.0%
GATAGAAACATTAGGAAATG+AGG + chr4_4:81504994-81505013 None:intergenic 30.0%
GCATACACATGTATAAAGAA+TGG + chr4_4:81505123-81505142 None:intergenic 30.0%
AAAGTGTGCAATTCAATTTG+GGG + chr4_4:81505194-81505213 None:intergenic 30.0%
CAAAGTGTGCAATTCAATTT+GGG + chr4_4:81505195-81505214 None:intergenic 30.0%
! ACAGCATACAGATTTGAAAT+CGG + chr4_4:81505255-81505274 None:intergenic 30.0%
AAAGTGTGCAATTCACTTTA+GGG + chr4_4:81505360-81505379 None:intergenic 30.0%
AAACAGTCTAAAAAAGTGAG+CGG + chr4_4:81505502-81505521 None:intergenic 30.0%
CCTGATTAGACAAAACAAAA+TGG + chr4_4:81505630-81505649 None:intergenic 30.0%
!!! CCATTTTGTTTTGTCTAATC+AGG - chr4_4:81505627-81505646 Msa0708050:CDS 30.0%
AATGACAGCAAAATAAAGAG+AGG + chr4_4:81505698-81505717 None:intergenic 30.0%
AGCATGTTGAAAACCTAAAT+TGG + chr4_4:81506284-81506303 None:intergenic 30.0%
!! AATTTAGGTTTTCAACATGC+TGG - chr4_4:81506283-81506302 Msa0708050:intron 30.0%
! ATTTGGCTTACATGAAAGAT+GGG + chr4_4:81506334-81506353 None:intergenic 30.0%
! TATTTGGCTTACATGAAAGA+TGG + chr4_4:81506335-81506354 None:intergenic 30.0%
!! TATTGATGAAATTTTCAGGC+TGG - chr4_4:81506405-81506424 Msa0708050:intron 30.0%
!!! GAAAGTACCTTTTAGATTCA+CGG - chr4_4:81506784-81506803 Msa0708050:intron 30.0%
TTATTCCGAAAATGCTATAG+TGG - chr4_4:81506857-81506876 Msa0708050:intron 30.0%
! TCATTCCACTATAGCATTTT+CGG + chr4_4:81506865-81506884 None:intergenic 30.0%
! ATAGTGGAATGACAGATAAT+TGG - chr4_4:81506873-81506892 Msa0708050:intron 30.0%
GCTGTTTGTAGTCTTTAATT+TGG + chr4_4:81507054-81507073 None:intergenic 30.0%
AGTAGCAGTGGAAAAAAAAA+TGG - chr4_4:81507135-81507154 Msa0708050:intron 30.0%
!! TGTGATTGCTTTATTTCTGA+TGG + chr4_4:81507264-81507283 None:intergenic 30.0%
CAAAAAGAAGGTAAATCACA+AGG - chr4_4:81507316-81507335 Msa0708050:intron 30.0%
! TATTGTACTGATGATTCTGA+AGG - chr4_4:81507428-81507447 Msa0708050:intron 30.0%
TATTTCGCAATTGAGTTAGT+CGG - chr4_4:81507527-81507546 Msa0708050:intron 30.0%
TGTTTAATTAACTAGCATGC+TGG - chr4_4:81507553-81507572 Msa0708050:intron 30.0%
AGGTTGGAAATATACCATTT+GGG - chr4_4:81507781-81507800 Msa0708050:intron 30.0%
AATGCAATGCAAATTGATAG+AGG - chr4_4:81507828-81507847 Msa0708050:intron 30.0%
ATGCAATGCAAATTGATAGA+GGG - chr4_4:81507829-81507848 Msa0708050:intron 30.0%
TAATTCACAATAATTACCGC+AGG + chr4_4:81507966-81507985 None:intergenic 30.0%
AGAATCTACACCAAATTGAA+AGG + chr4_4:81508206-81508225 None:intergenic 30.0%
TCTATTATTGATGCTCAAAG+TGG - chr4_4:81508226-81508245 Msa0708050:CDS 30.0%
!! TGTATGTGAAGTTTTGTAGA+AGG - chr4_4:81508250-81508269 Msa0708050:CDS 30.0%
! AAGTTGATTCTTCGACATTC+CGG + chr4_4:81503664-81503683 None:intergenic 35.0%
CGATATAATGTCTCAGATGA+AGG - chr4_4:81503686-81503705 Msa0708050:three_prime_UTR 35.0%
GTTAGCAATAGCAATAAGGA+GGG + chr4_4:81503749-81503768 None:intergenic 35.0%
! AAGGGTTAGCAATAGCAATA+AGG + chr4_4:81503753-81503772 None:intergenic 35.0%
! AAAGTGCTTTGGTTAACATG+GGG + chr4_4:81503844-81503863 None:intergenic 35.0%
!! GAAAAGTGCTTTGGTTAACA+TGG + chr4_4:81503846-81503865 None:intergenic 35.0%
ACTCTTCTTACTACACACTA+CGG + chr4_4:81504033-81504052 None:intergenic 35.0%
AGTAAGAAGAGTAGATCAGA+TGG - chr4_4:81504041-81504060 Msa0708050:CDS 35.0%
GAGGATAGTCAAATTACAAG+AGG - chr4_4:81504063-81504082 Msa0708050:CDS 35.0%
! TAAGCCTTATCTCACTAAGT+GGG + chr4_4:81504209-81504228 None:intergenic 35.0%
ATGGTTCCAAAATAAGCTAG+TGG + chr4_4:81504285-81504304 None:intergenic 35.0%
!!! CTAGCTTATTTTGGAACCAT+AGG - chr4_4:81504285-81504304 Msa0708050:intron 35.0%
! ATTTTTGTGATTCTTCGGTG+CGG - chr4_4:81504352-81504371 Msa0708050:intron 35.0%
ATATGATCCAAAGTAAGCAC+AGG + chr4_4:81504524-81504543 None:intergenic 35.0%
ATATAGATGTTGCTGAGCTA+AGG - chr4_4:81504580-81504599 Msa0708050:intron 35.0%
!! CAAAAAGGTGTTGCTAGAAA+GGG - chr4_4:81504621-81504640 Msa0708050:intron 35.0%
!! AAAAAGGTGTTGCTAGAAAG+GGG - chr4_4:81504622-81504641 Msa0708050:intron 35.0%
TCGTTACTGCATAATATTGC+AGG + chr4_4:81504701-81504720 None:intergenic 35.0%
TGCAATATTATGCAGTAACG+AGG - chr4_4:81504700-81504719 Msa0708050:intron 35.0%
!! AGATTGTGTTATGTTTTGGG+TGG - chr4_4:81504763-81504782 Msa0708050:intron 35.0%
!! GATTGTGTTATGTTTTGGGT+GGG - chr4_4:81504764-81504783 Msa0708050:intron 35.0%
! AAGTCTTATCCCACTAAATG+AGG + chr4_4:81504841-81504860 None:intergenic 35.0%
TCATTTAGTGGGATAAGACT+TGG - chr4_4:81504840-81504859 Msa0708050:intron 35.0%
AAGTGTGCAATTCAATTTGG+GGG + chr4_4:81505193-81505212 None:intergenic 35.0%
CCAAAGTGTGCAATTCAATT+TGG + chr4_4:81505196-81505215 None:intergenic 35.0%
CCAAATTGAATTGCACACTT+TGG - chr4_4:81505193-81505212 Msa0708050:intron 35.0%
! GGAGTCGTTTGAGTTATATA+AGG - chr4_4:81505223-81505242 Msa0708050:intron 35.0%
AAGTGTGCAATTCACTTTAG+GGG + chr4_4:81505359-81505378 None:intergenic 35.0%
CAAAGTGTGCAATTCACTTT+AGG + chr4_4:81505361-81505380 None:intergenic 35.0%
CTAAAGTGAATTGCACACTT+TGG - chr4_4:81505359-81505378 Msa0708050:intron 35.0%
!! GAGTCGTTTGAGTTGTATAA+GGG - chr4_4:81505390-81505409 Msa0708050:intron 35.0%
AGCATGCAAATCTATACCAA+AGG + chr4_4:81505728-81505747 None:intergenic 35.0%
GCTAATAAATGGTTGCTTCT+AGG - chr4_4:81505745-81505764 Msa0708050:CDS 35.0%
!!! TGATTGTTTTGAGGAGCTAT+TGG + chr4_4:81505785-81505804 None:intergenic 35.0%
TGTGAAGATGAATGAACAGA+GGG + chr4_4:81506100-81506119 None:intergenic 35.0%
AAACCTAAATTGGCACCAAT+CGG + chr4_4:81506274-81506293 None:intergenic 35.0%
ATCATCTCAGTCATCTTATC+AGG - chr4_4:81506491-81506510 Msa0708050:intron 35.0%
TGAAAACTATGTTGGTACCA+TGG - chr4_4:81506544-81506563 Msa0708050:intron 35.0%
GAAAACTATGTTGGTACCAT+GGG - chr4_4:81506545-81506564 Msa0708050:intron 35.0%
! CTTTACACCATCATGAGTTT+TGG - chr4_4:81506606-81506625 Msa0708050:intron 35.0%
CATGAATCCAAAACTCATGA+TGG + chr4_4:81506616-81506635 None:intergenic 35.0%
TGCTGCAGAAAAAATAGGAT+TGG + chr4_4:81506654-81506673 None:intergenic 35.0%
GATTCTGCTGCAGAAAAAAT+AGG + chr4_4:81506659-81506678 None:intergenic 35.0%
! TCTGAAGTGTCACTACTATT+AGG + chr4_4:81506702-81506721 None:intergenic 35.0%
CATTTCACCGTGAATCTAAA+AGG + chr4_4:81506794-81506813 None:intergenic 35.0%
AAACCTTGGTCTCAATTCTT+TGG + chr4_4:81507162-81507181 None:intergenic 35.0%
TGAGTTGCATAGATCAGAAA+TGG - chr4_4:81507354-81507373 Msa0708050:intron 35.0%
GAGTTGCATAGATCAGAAAT+GGG - chr4_4:81507355-81507374 Msa0708050:intron 35.0%
AGTTGCATAGATCAGAAATG+GGG - chr4_4:81507356-81507375 Msa0708050:intron 35.0%
ATCAGAAATGGGGTAAAGAT+GGG - chr4_4:81507366-81507385 Msa0708050:intron 35.0%
TCATCAGTACAATATGACAG+CGG + chr4_4:81507422-81507441 None:intergenic 35.0%
AGGTTGAAACCAATTAACAC+CGG - chr4_4:81507448-81507467 Msa0708050:intron 35.0%
! GTATATTTTTCTCCTCCTTC+CGG + chr4_4:81507470-81507489 None:intergenic 35.0%
!!! ACCTCAATCCAAGTTGATTT+TGG - chr4_4:81507582-81507601 Msa0708050:intron 35.0%
ACCAAAATCAACTTGGATTG+AGG + chr4_4:81507586-81507605 None:intergenic 35.0%
!!! ACCTCAATCCAAGTTGATTT+TGG - chr4_4:81507582-81507601 Msa0708050:intron 35.0%
ACCAAAATCAACTTGGATTG+AGG + chr4_4:81507586-81507605 None:intergenic 35.0%
! CAGGTTGGAAATATACCATT+TGG - chr4_4:81507780-81507799 Msa0708050:intron 35.0%
AAATTGATAGAGGGTCTTCT+TGG - chr4_4:81507838-81507857 Msa0708050:intron 35.0%
AGAGAATATCAATAAGCTGC+AGG + chr4_4:81508010-81508029 None:intergenic 35.0%
AGCACTTGATTTCTTTGTTC+CGG + chr4_4:81508124-81508143 None:intergenic 35.0%
TACACCAAATTGAAAGGAGT+GGG + chr4_4:81508200-81508219 None:intergenic 35.0%
GTTGACTGCAATTAAATCAC+TGG - chr4_4:81508319-81508338 Msa0708050:five_prime_UTR 35.0%
GGTTAGCAATAGCAATAAGG+AGG + chr4_4:81503750-81503769 None:intergenic 40.0%
!! GTTTTGGATGAGGATCTGTT+TGG + chr4_4:81503822-81503841 None:intergenic 40.0%
!!! TTAACATGGGGTTTTGGATG+AGG + chr4_4:81503832-81503851 None:intergenic 40.0%
! CTTTGGTTAACATGGGGTTT+TGG + chr4_4:81503838-81503857 None:intergenic 40.0%
!! GTTAACCAAAGCACTTTTCC+AGG - chr4_4:81503847-81503866 Msa0708050:CDS 40.0%
!! AGAAACCTGGAAAAGTGCTT+TGG + chr4_4:81503855-81503874 None:intergenic 40.0%
!! CCTAGTTCTAGAAAGAAACC+TGG + chr4_4:81503868-81503887 None:intergenic 40.0%
!! CCAGGTTTCTTTCTAGAACT+AGG - chr4_4:81503865-81503884 Msa0708050:intron 40.0%
AAGAAGAGTAGATCAGATGG+AGG - chr4_4:81504044-81504063 Msa0708050:CDS 40.0%
! AAGCCTTATCTCACTAAGTG+GGG + chr4_4:81504208-81504227 None:intergenic 40.0%
! CTAAGCCTTATCTCACTAAG+TGG + chr4_4:81504210-81504229 None:intergenic 40.0%
!! TGATGTGTCGGTTATAGCTT+TGG - chr4_4:81504318-81504337 Msa0708050:intron 40.0%
! GCTAGGAGTGCAATTTATTG+TGG - chr4_4:81504385-81504404 Msa0708050:intron 40.0%
TGTAGGATTAGGAGACATCT+TGG - chr4_4:81504440-81504459 Msa0708050:intron 40.0%
TTATCATTAATGAGCGAGGC+AGG - chr4_4:81504481-81504500 Msa0708050:intron 40.0%
TGCAAGGTATGGTTGCAAAA+AGG - chr4_4:81504606-81504625 Msa0708050:intron 40.0%
!! GCAAAAAGGTGTTGCTAGAA+AGG - chr4_4:81504620-81504639 Msa0708050:intron 40.0%
TTGATGGAAGTTTGATTGGG+TGG - chr4_4:81504730-81504749 Msa0708050:intron 40.0%
! GAAGTTTGATTGGGTGGATT+CGG - chr4_4:81504736-81504755 Msa0708050:intron 40.0%
CTTATCCCACTAAATGAGGT+CGG + chr4_4:81504837-81504856 None:intergenic 40.0%
AGTGTGCAATTCAATTTGGG+GGG + chr4_4:81505192-81505211 None:intergenic 40.0%
!! ATTGCACACTTTGGAATAGC+AGG - chr4_4:81505202-81505221 Msa0708050:intron 40.0%
! TCACTTTAGGGGGTCAAATA+AGG + chr4_4:81505348-81505367 None:intergenic 40.0%
AGTGTGCAATTCACTTTAGG+GGG + chr4_4:81505358-81505377 None:intergenic 40.0%
! AATTGCACACTTTGGAAGAG+TGG - chr4_4:81505367-81505386 Msa0708050:intron 40.0%
! ATTGCACACTTTGGAAGAGT+GGG - chr4_4:81505368-81505387 Msa0708050:intron 40.0%
!! GGAGTCGTTTGAGTTGTATA+AGG - chr4_4:81505389-81505408 Msa0708050:intron 40.0%
!!! GCTGTCATTTTCACAACCTT+TGG - chr4_4:81505709-81505728 Msa0708050:CDS 40.0%
!! GGAGCTATTGGTTGAACTTT+TGG + chr4_4:81505773-81505792 None:intergenic 40.0%
!! ACTGGTTGCTGATTGTTTTG+AGG + chr4_4:81505794-81505813 None:intergenic 40.0%
! TGAACACTTGGTCTTTGTGT+CGG + chr4_4:81505821-81505840 None:intergenic 40.0%
! TGAGATTGATGACTCGTTGT+AGG + chr4_4:81505965-81505984 None:intergenic 40.0%
AAATGCCACAACAGCCTAAA+GGG - chr4_4:81506008-81506027 Msa0708050:CDS 40.0%
TGTGGAAGTTGTGATGATTG+TGG + chr4_4:81506067-81506086 None:intergenic 40.0%
CTGTGAAGATGAATGAACAG+AGG + chr4_4:81506101-81506120 None:intergenic 40.0%
! AGAGGCATATGTGAAAATCC+AGG + chr4_4:81506184-81506203 None:intergenic 40.0%
! TTAGGTTTTCAACATGCTGG+TGG - chr4_4:81506286-81506305 Msa0708050:intron 40.0%
! GACTGAGATGATTGTTGACT+TGG + chr4_4:81506483-81506502 None:intergenic 40.0%
GTATGTTGTGCTACAACTGT+TGG - chr4_4:81506513-81506532 Msa0708050:intron 40.0%
TCACACATCACAACAAACCT+TGG + chr4_4:81507176-81507195 None:intergenic 40.0%
! TGTGATGTGTGATGATGCAA+AGG - chr4_4:81507184-81507203 Msa0708050:intron 40.0%
GCATATTTCGCTGACAACTA+CGG + chr4_4:81507226-81507245 None:intergenic 40.0%
TAGTTGTCAGCGAAATATGC+AGG - chr4_4:81507226-81507245 Msa0708050:intron 40.0%
GATCAGAAATGGGGTAAAGA+TGG - chr4_4:81507365-81507384 Msa0708050:intron 40.0%
TGAAACCAATTAACACCGGA+AGG - chr4_4:81507452-81507471 Msa0708050:intron 40.0%
GCAGCAATGACAAATTTGTC+AGG + chr4_4:81507502-81507521 None:intergenic 40.0%
!! GAAGTCATGCTTTTTGTGTC+AGG - chr4_4:81507761-81507780 Msa0708050:intron 40.0%
!! TCATGCTTTTTGTGTCAGGT+TGG - chr4_4:81507765-81507784 Msa0708050:intron 40.0%
TGAGCAGAAACCATAGATGA+TGG + chr4_4:81507912-81507931 None:intergenic 40.0%
TCTATGGTTTCTGCTCAGAT+CGG - chr4_4:81507915-81507934 Msa0708050:intron 40.0%
TTCACAATAATTACCGCAGG+AGG + chr4_4:81507963-81507982 None:intergenic 40.0%
AAGCTGCAGGACAATTTCAA+GGG + chr4_4:81507997-81508016 None:intergenic 40.0%
TAAGCTGCAGGACAATTTCA+AGG + chr4_4:81507998-81508017 None:intergenic 40.0%
ACTTGATTTCTTTGTTCCGG+AGG + chr4_4:81508121-81508140 None:intergenic 40.0%
ATCTCCCACTCCTTTCAATT+TGG - chr4_4:81508193-81508212 Msa0708050:intron 40.0%
CTACACCAAATTGAAAGGAG+TGG + chr4_4:81508201-81508220 None:intergenic 40.0%
ACTTCCTCATACAAAGGTCA+AGG - chr4_4:81508382-81508401 Msa0708050:five_prime_UTR 40.0%
CTTCCTCATACAAAGGTCAA+GGG - chr4_4:81508383-81508402 Msa0708050:five_prime_UTR 40.0%
TAACCCTTGACCTTTGTATG+AGG + chr4_4:81508389-81508408 None:intergenic 40.0%
! GACTGTGAGAGGTTTTGCAT+CGG - chr4_4:81503543-81503562 Msa0708050:three_prime_UTR 45.0%
ATCGGCAATCAGGTTTACGA+CGG - chr4_4:81503561-81503580 Msa0708050:three_prime_UTR 45.0%
AATCAGGTTTACGACGGCAA+AGG - chr4_4:81503567-81503586 Msa0708050:three_prime_UTR 45.0%
ATGGCCGGAAAACAAGTAAG+CGG - chr4_4:81503615-81503634 Msa0708050:three_prime_UTR 45.0%
AGGGTGAGAAAGAGAGAAAG+AGG + chr4_4:81503730-81503749 None:intergenic 45.0%
CTTATCTCACTAAGTGGGGT+CGG + chr4_4:81504204-81504223 None:intergenic 45.0%
ACATCACTAGCAATGCCCTA+TGG + chr4_4:81504304-81504323 None:intergenic 45.0%
TGGTTCAGTTCATATGCAGC+TGG - chr4_4:81504405-81504424 Msa0708050:intron 45.0%
GGTTCAGTTCATATGCAGCT+GGG - chr4_4:81504406-81504425 Msa0708050:intron 45.0%
GCTGGGATAGTTTCTGTTGT+AGG - chr4_4:81504423-81504442 Msa0708050:intron 45.0%
TAGCGAACCTGTGCTTACTT+TGG - chr4_4:81504514-81504533 Msa0708050:intron 45.0%
AGCTAAGGTTGTGCAAGGTA+TGG - chr4_4:81504595-81504614 Msa0708050:intron 45.0%
CTAAATGAGGTCGGCACAAA+TGG + chr4_4:81504828-81504847 None:intergenic 45.0%
! TTTGTGCCGACCTCATTTAG+TGG - chr4_4:81504828-81504847 Msa0708050:intron 45.0%
! TTGTGCCGACCTCATTTAGT+GGG - chr4_4:81504829-81504848 Msa0708050:intron 45.0%
CAGCACAAGATGTGCACAAA+TGG + chr4_4:81504888-81504907 None:intergenic 45.0%
TTTGTGCACATCTTGTGCTG+TGG - chr4_4:81504888-81504907 Msa0708050:intron 45.0%
TCAATTTGGGGGGTCAAGTA+AGG + chr4_4:81505182-81505201 None:intergenic 45.0%
AATCAGGCGCAAATCATGCT+TGG - chr4_4:81505643-81505662 Msa0708050:CDS 45.0%
CTCAAACTCAAATTCCTCCC+AGG - chr4_4:81505894-81505913 Msa0708050:CDS 45.0%
!!! TGATTTTGGTGTTTCCTGGG+AGG + chr4_4:81505911-81505930 None:intergenic 45.0%
!!! GGCTGATTTTGGTGTTTCCT+GGG + chr4_4:81505914-81505933 None:intergenic 45.0%
!!! AGGCTGATTTTGGTGTTTCC+TGG + chr4_4:81505915-81505934 None:intergenic 45.0%
! GCATATGAAACTGGCACTGA+AGG + chr4_4:81505935-81505954 None:intergenic 45.0%
GGAACAGCAGCATATGAAAC+TGG + chr4_4:81505944-81505963 None:intergenic 45.0%
CAAATGCCACAACAGCCTAA+AGG - chr4_4:81506007-81506026 Msa0708050:CDS 45.0%
AACAGATGCTGGAGCTACTT+GGG + chr4_4:81506044-81506063 None:intergenic 45.0%
GATGATTGTGGAACAGATGC+TGG + chr4_4:81506055-81506074 None:intergenic 45.0%
GAAGATGAATGAACAGAGGG+TGG + chr4_4:81506097-81506116 None:intergenic 45.0%
!! GGCATTTGAGTTGGATGAAG+TGG + chr4_4:81506124-81506143 None:intergenic 45.0%
GAAAATCCAGGAGTCTGCAA+TGG + chr4_4:81506172-81506191 None:intergenic 45.0%
TAAATTGGCACCAATCGGTG+GGG + chr4_4:81506269-81506288 None:intergenic 45.0%
CTAAATTGGCACCAATCGGT+GGG + chr4_4:81506270-81506289 None:intergenic 45.0%
TGGCTTACATGAAAGATGGG+CGG + chr4_4:81506331-81506350 None:intergenic 45.0%
AACGTAGATCCAACACTAGG+AGG + chr4_4:81506438-81506457 None:intergenic 45.0%
GTGACACTTCAGACGATGTT+AGG - chr4_4:81506709-81506728 Msa0708050:intron 45.0%
! TTATCTTGAGTTGCTGCTCC+TGG - chr4_4:81506830-81506849 Msa0708050:intron 45.0%
! CATTTTCGGAATAAGCCACC+AGG + chr4_4:81506851-81506870 None:intergenic 45.0%
TCGGCTACATGGATCCTAAT+GGG - chr4_4:81506942-81506961 Msa0708050:intron 45.0%
TGTGAAGTGTGAAGTAGCAG+TGG - chr4_4:81507123-81507142 Msa0708050:intron 45.0%
GGACCAAAGAATTGAGACCA+AGG - chr4_4:81507156-81507175 Msa0708050:intron 45.0%
! TGTGTGATGATGCAAAGGAG+TGG - chr4_4:81507189-81507208 Msa0708050:intron 45.0%
! GTGTGATGATGCAAAGGAGT+GGG - chr4_4:81507190-81507209 Msa0708050:intron 45.0%
TTGTCAGCGAAATATGCAGG+TGG - chr4_4:81507229-81507248 Msa0708050:intron 45.0%
AACCAATTAACACCGGAAGG+AGG - chr4_4:81507455-81507474 Msa0708050:intron 45.0%
CTGCTGAAATCAGACCCAAA+TGG + chr4_4:81507798-81507817 None:intergenic 45.0%
TCTGATTTCAGCAGTCAAGC+TGG - chr4_4:81507804-81507823 Msa0708050:intron 45.0%
GAGAATCTAGCACAGCATTC+TGG - chr4_4:81507876-81507895 Msa0708050:intron 45.0%
GGTAGGAGATTTATCTGCTC+CGG + chr4_4:81508100-81508119 None:intergenic 45.0%
GCAGATAAATCTCCTACCTC+CGG - chr4_4:81508102-81508121 Msa0708050:CDS 45.0%
GATTTCTTTGTTCCGGAGGT+AGG + chr4_4:81508117-81508136 None:intergenic 45.0%
TAAGAATCGCACGCACGAAG+CGG - chr4_4:81503516-81503535 Msa0708050:three_prime_UTR 50.0%
!! GAGGTTTTGCATCGGCAATC+AGG - chr4_4:81503551-81503570 Msa0708050:three_prime_UTR 50.0%
!! CTCGCCGCTTACTTGTTTTC+CGG + chr4_4:81503622-81503641 None:intergenic 50.0%
GGAAAACAAGTAAGCGGCGA+GGG - chr4_4:81503621-81503640 Msa0708050:three_prime_UTR 50.0%
!! GGATCTGTTTGGCTTGTTGC+TGG + chr4_4:81503811-81503830 None:intergenic 50.0%
CGACCCCACTTAGTGAGATA+AGG - chr4_4:81504202-81504221 Msa0708050:intron 50.0%
! GGGCATTGCTAGTGATGTGT+CGG - chr4_4:81504306-81504325 Msa0708050:intron 50.0%
TGCTGAGCTAAGGTTGTGCA+AGG - chr4_4:81504590-81504609 Msa0708050:intron 50.0%
TTCACGGACGCTCTTTCAGT+CGG - chr4_4:81505017-81505036 Msa0708050:intron 50.0%
GGCGCAAATCATGCTTGGAA+TGG - chr4_4:81505648-81505667 Msa0708050:CDS 50.0%
AATGGTGCAGTCGCAACAAG+CGG - chr4_4:81505666-81505685 Msa0708050:CDS 50.0%
ATTGGAGCAGGCTGAACACT+TGG + chr4_4:81505833-81505852 None:intergenic 50.0%
TGCACAGGCAATATTGGAGC+AGG + chr4_4:81505845-81505864 None:intergenic 50.0%
GCTCCAATATTGCCTGTGCA+AGG - chr4_4:81505845-81505864 Msa0708050:CDS 50.0%
CCACCTTGCACAGGCAATAT+TGG + chr4_4:81505851-81505870 None:intergenic 50.0%
CCAATATTGCCTGTGCAAGG+TGG - chr4_4:81505848-81505867 Msa0708050:CDS 50.0%
TCTTGTATGCCACCTTGCAC+AGG + chr4_4:81505860-81505879 None:intergenic 50.0%
GGTGGCATACAAGATCAAGC+AGG - chr4_4:81505866-81505885 Msa0708050:CDS 50.0%
!! CTGGCACTGAAGGCTGATTT+TGG + chr4_4:81505925-81505944 None:intergenic 50.0%
TGCAACGAATGTGCAGCTGT+GGG + chr4_4:81505989-81506008 None:intergenic 50.0%
TTGCAACGAATGTGCAGCTG+TGG + chr4_4:81505990-81506009 None:intergenic 50.0%
AGATGCCCTTTAGGCTGTTG+TGG + chr4_4:81506016-81506035 None:intergenic 50.0%
ACAGATGCTGGAGCTACTTG+GGG + chr4_4:81506043-81506062 None:intergenic 50.0%
GAACAGATGCTGGAGCTACT+TGG + chr4_4:81506045-81506064 None:intergenic 50.0%
! ACAGAGGGTGGAGGTATATG+TGG + chr4_4:81506085-81506104 None:intergenic 50.0%
GATGAATGAACAGAGGGTGG+AGG + chr4_4:81506094-81506113 None:intergenic 50.0%
GAGGCAGTTGGCATTTGAGT+TGG + chr4_4:81506133-81506152 None:intergenic 50.0%
CATCAACCATTGCAGACTCC+TGG - chr4_4:81506163-81506182 Msa0708050:intron 50.0%
GTTTGCACTGAAGGTGGTCT+GGG + chr4_4:81506229-81506248 None:intergenic 50.0%
TGGAAGGTTTGCACTGAAGG+TGG + chr4_4:81506235-81506254 None:intergenic 50.0%
GGATGGAAGGTTTGCACTGA+AGG + chr4_4:81506238-81506257 None:intergenic 50.0%
ACCAATCGGTGGGGGATATT+GGG + chr4_4:81506260-81506279 None:intergenic 50.0%
AAATTGGCACCAATCGGTGG+GGG + chr4_4:81506268-81506287 None:intergenic 50.0%
CCTAAATTGGCACCAATCGG+TGG + chr4_4:81506271-81506290 None:intergenic 50.0%
!! CCACCGATTGGTGCCAATTT+AGG - chr4_4:81506268-81506287 Msa0708050:intron 50.0%
CTTACATGAAAGATGGGCGG+AGG + chr4_4:81506328-81506347 None:intergenic 50.0%
GGTGCAAAACCTCCTAGTGT+TGG - chr4_4:81506426-81506445 Msa0708050:intron 50.0%
GGGAACGTAGATCCAACACT+AGG + chr4_4:81506441-81506460 None:intergenic 50.0%
TTGGATCTACGTTCCCACCA+GGG - chr4_4:81506445-81506464 Msa0708050:intron 50.0%
CAGAGCATGACAAACACCCA+TGG + chr4_4:81506564-81506583 None:intergenic 50.0%
TGGGTGTTTGTCATGCTCTG+TGG - chr4_4:81506564-81506583 Msa0708050:intron 50.0%
! CACTTGGTGGGATAAGGCTT+TGG + chr4_4:81506919-81506938 None:intergenic 50.0%
! CAAAGCCTTATCCCACCAAG+TGG - chr4_4:81506917-81506936 Msa0708050:intron 50.0%
CTTATCCCACCAAGTGGTGT+CGG - chr4_4:81506923-81506942 Msa0708050:intron 50.0%
GTCGGCTACATGGATCCTAA+TGG - chr4_4:81506941-81506960 Msa0708050:intron 50.0%
GACATGGCAGACATCCCATT+AGG + chr4_4:81506959-81506978 None:intergenic 50.0%
! CTCCTCCTTCCGGTGTTAAT+TGG + chr4_4:81507460-81507479 None:intergenic 50.0%
TGCTGTGCTAGATTCTCCGA+GGG + chr4_4:81507873-81507892 None:intergenic 50.0%
ATGCTGTGCTAGATTCTCCG+AGG + chr4_4:81507874-81507893 None:intergenic 50.0%
TCCTCAGGGACCATCATCTA+TGG - chr4_4:81507899-81507918 Msa0708050:intron 50.0%
! ACCATAGATGATGGTCCCTG+AGG + chr4_4:81507903-81507922 None:intergenic 50.0%
CATGCAGTTGACACCAGACA+TGG - chr4_4:81508039-81508058 Msa0708050:intron 50.0%
GTTGACACCAGACATGGAGA+AGG - chr4_4:81508045-81508064 Msa0708050:intron 50.0%
AGCAATGCCTTCTCCATGTC+TGG + chr4_4:81508055-81508074 None:intergenic 50.0%
AAGAATCGCACGCACGAAGC+GGG - chr4_4:81503517-81503536 Msa0708050:three_prime_UTR 55.0%
GTTTACGACGGCAAAGGCTG+CGG - chr4_4:81503573-81503592 Msa0708050:three_prime_UTR 55.0%
CGACAACGAGGTCTTCGCAA+TGG - chr4_4:81503596-81503615 Msa0708050:three_prime_UTR 55.0%
AACGAGGTCTTCGCAATGGC+CGG - chr4_4:81503600-81503619 Msa0708050:three_prime_UTR 55.0%
CGGAAAACAAGTAAGCGGCG+AGG - chr4_4:81503620-81503639 Msa0708050:three_prime_UTR 55.0%
CGAGGGTTTATCAGCGAACC+TGG - chr4_4:81503638-81503657 Msa0708050:three_prime_UTR 55.0%
GGTTTATCAGCGAACCTGGC+CGG - chr4_4:81503642-81503661 Msa0708050:three_prime_UTR 55.0%
GATTCTTCGACATTCCGGCC+AGG + chr4_4:81503659-81503678 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr4_4:81504196-81504215 None:intergenic 55.0%
GGTGCGGTATTTGTGCAGCT+AGG - chr4_4:81504368-81504387 Msa0708050:intron 55.0%
! GTGTTGCTAGAAAGGGGCTG+TGG - chr4_4:81504628-81504647 Msa0708050:intron 55.0%
!! GGTCTTTGTGTCGGCTGTAC+TGG + chr4_4:81505812-81505831 None:intergenic 55.0%
TGGGGAGTCAGATGCCCTTT+AGG + chr4_4:81506025-81506044 None:intergenic 55.0%
AATGCCAACTGCCTCGAGTC+AGG - chr4_4:81506138-81506157 Msa0708050:CDS 55.0%
GGTTTGCACTGAAGGTGGTC+TGG + chr4_4:81506230-81506249 None:intergenic 55.0%
TGGGGGATATTGGGGATGGA+AGG + chr4_4:81506251-81506270 None:intergenic 55.0%
CCAATCGGTGGGGGATATTG+GGG + chr4_4:81506259-81506278 None:intergenic 55.0%
CACCAATCGGTGGGGGATAT+TGG + chr4_4:81506261-81506280 None:intergenic 55.0%
CATGAAAGATGGGCGGAGGA+AGG + chr4_4:81506324-81506343 None:intergenic 55.0%
GTTGGATCTACGTTCCCACC+AGG - chr4_4:81506444-81506463 Msa0708050:intron 55.0%
! TCTTGAGTTGCTGCTCCTGG+TGG - chr4_4:81506833-81506852 Msa0708050:intron 55.0%
! CGACACCACTTGGTGGGATA+AGG + chr4_4:81506925-81506944 None:intergenic 55.0%
TGTAGCCGACACCACTTGGT+GGG + chr4_4:81506931-81506950 None:intergenic 55.0%
ATGTAGCCGACACCACTTGG+TGG + chr4_4:81506932-81506951 None:intergenic 55.0%
!! ACCAAGTGGTGTCGGCTACA+TGG - chr4_4:81506931-81506950 Msa0708050:intron 55.0%
TCCATGTAGCCGACACCACT+TGG + chr4_4:81506935-81506954 None:intergenic 55.0%
AGAGGGTCTTCTTGGATGCC+TGG - chr4_4:81507846-81507865 Msa0708050:intron 55.0%
TTCTTGGATGCCTGGTCCCT+CGG - chr4_4:81507854-81507873 Msa0708050:intron 55.0%
AGCACAGCATTCTGGTCCTC+AGG - chr4_4:81507884-81507903 Msa0708050:intron 55.0%
GCACAGCATTCTGGTCCTCA+GGG - chr4_4:81507885-81507904 Msa0708050:intron 55.0%
! GTGCTGCTAATCAGCCTCCT+CGG - chr4_4:81507937-81507956 Msa0708050:intron 55.0%
ATAATTACCGCAGGAGGCCG+AGG + chr4_4:81507957-81507976 None:intergenic 55.0%
!! GGAGAAGGCATTGCTTCAGC+AGG - chr4_4:81508060-81508079 Msa0708050:CDS 55.0%
GCAGGTCATGAGTCTCACAC+CGG - chr4_4:81508078-81508097 Msa0708050:CDS 55.0%
GGGGGGACTTCCTCATACAA+AGG - chr4_4:81508376-81508395 Msa0708050:five_prime_UTR 55.0%
! TGGTTGATGCGCCTGACTCG+AGG + chr4_4:81506152-81506171 None:intergenic 60.0%
GGTGGCAATGGTGGTTGCAG+AGG + chr4_4:81506202-81506221 None:intergenic 60.0%
ACTGAAGGTGGTCTGGGCTG+CGG + chr4_4:81506223-81506242 None:intergenic 60.0%
TCGGTGGGGGATATTGGGGA+TGG + chr4_4:81506255-81506274 None:intergenic 60.0%
CCCCAATATCCCCCACCGAT+TGG - chr4_4:81506256-81506275 Msa0708050:CDS 60.0%
ATCTACGTTCCCACCAGGGC+AGG - chr4_4:81506449-81506468 Msa0708050:intron 60.0%
GTAGTAGTGCCTGCCCTGGT+GGG + chr4_4:81506461-81506480 None:intergenic 60.0%
! CTTGGTAGTAGTGCCTGCCC+TGG + chr4_4:81506465-81506484 None:intergenic 60.0%
GCTAGATTCTCCGAGGGACC+AGG + chr4_4:81507867-81507886 None:intergenic 60.0%
AATCGCACGCACGAAGCGGG+AGG - chr4_4:81503520-81503539 Msa0708050:three_prime_UTR 65.0%
ATCGCACGCACGAAGCGGGA+GGG - chr4_4:81503521-81503540 Msa0708050:three_prime_UTR 65.0%
GAAGCGGGAGGGACTGTGAG+AGG - chr4_4:81503532-81503551 Msa0708050:three_prime_UTR 65.0%
CAAAGGCTGCGGCGACAACG+AGG - chr4_4:81503584-81503603 Msa0708050:three_prime_UTR 65.0%
! TGCGCCTGACTCGAGGCAGT+TGG + chr4_4:81506145-81506164 None:intergenic 65.0%
GGTAGTAGTGCCTGCCCTGG+TGG + chr4_4:81506462-81506481 None:intergenic 65.0%
ATTACCGCAGGAGGCCGAGG+AGG + chr4_4:81507954-81507973 None:intergenic 65.0%
CTGGGCTGCGGTGGCAATGG+TGG + chr4_4:81506211-81506230 None:intergenic 70.0%
GGTCTGGGCTGCGGTGGCAA+TGG + chr4_4:81506214-81506233 None:intergenic 70.0%
GAAGGTGGTCTGGGCTGCGG+TGG + chr4_4:81506220-81506239 None:intergenic 70.0%
TCAGCCTCCTCGGCCTCCTG+CGG - chr4_4:81507947-81507966 Msa0708050:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 81503474 81508454 81503474 ID=Msa0708050;Name=Msa0708050
chr4_4 mRNA 81503474 81508454 81503474 ID=Msa0708050-mRNA-1;Parent=Msa0708050;Name=Msa0708050-mRNA-1;_AED=0.01;_eAED=0.01;_QI=141|1|1|1|0.83|1|7|283|395
chr4_4 exon 81503474 81503882 81503474 ID=Msa0708050-mRNA-1:exon:26711;Parent=Msa0708050-mRNA-1
chr4_4 exon 81503960 81504145 81503960 ID=Msa0708050-mRNA-1:exon:26710;Parent=Msa0708050-mRNA-1
chr4_4 exon 81505416 81505505 81505416 ID=Msa0708050-mRNA-1:exon:26709;Parent=Msa0708050-mRNA-1
chr4_4 exon 81505586 81506161 81505586 ID=Msa0708050-mRNA-1:exon:26708;Parent=Msa0708050-mRNA-1
chr4_4 exon 81506241 81506279 81506241 ID=Msa0708050-mRNA-1:exon:26707;Parent=Msa0708050-mRNA-1
chr4_4 exon 81508060 81508137 81508060 ID=Msa0708050-mRNA-1:exon:26706;Parent=Msa0708050-mRNA-1
chr4_4 exon 81508221 81508454 81508221 ID=Msa0708050-mRNA-1:exon:26705;Parent=Msa0708050-mRNA-1
chr4_4 five_prime_UTR 81508314 81508454 81508314 ID=Msa0708050-mRNA-1:five_prime_utr;Parent=Msa0708050-mRNA-1
chr4_4 CDS 81508221 81508313 81508221 ID=Msa0708050-mRNA-1:cds;Parent=Msa0708050-mRNA-1
chr4_4 CDS 81508060 81508137 81508060 ID=Msa0708050-mRNA-1:cds;Parent=Msa0708050-mRNA-1
chr4_4 CDS 81506241 81506279 81506241 ID=Msa0708050-mRNA-1:cds;Parent=Msa0708050-mRNA-1
chr4_4 CDS 81505586 81506161 81505586 ID=Msa0708050-mRNA-1:cds;Parent=Msa0708050-mRNA-1
chr4_4 CDS 81505416 81505505 81505416 ID=Msa0708050-mRNA-1:cds;Parent=Msa0708050-mRNA-1
chr4_4 CDS 81503960 81504145 81503960 ID=Msa0708050-mRNA-1:cds;Parent=Msa0708050-mRNA-1
chr4_4 CDS 81503757 81503882 81503757 ID=Msa0708050-mRNA-1:cds;Parent=Msa0708050-mRNA-1
chr4_4 three_prime_UTR 81503474 81503756 81503474 ID=Msa0708050-mRNA-1:three_prime_utr;Parent=Msa0708050-mRNA-1
Gene Sequence

>Msa0708050

ATGGCCGGAAAACAAGTAAGCGGCGAGGGTTTATCAGCGAACCTGGCCGGAATGTCGAAGAATCAACTTTACGATATAATGTCTCAGATGAAGAATTTGATCGAACAGAACCAGCAACAAGCCAAACAGATCCTCATCCAAAACCCCATGTTAACCAAAGCACTTTTCCAGGCGCAAATCATGCTTGGAATGGTGCAGTCGCAACAAGCGGTTCCAAAAGTTCAACCAATAGCTCCTCAAAACAATCAGCAACCAGTACAGCCGACACAAAGACCAAGTGTTCAGCCTGCTCCAATATTGCCTGTGCAAGGTGGCATACAAGATCAAGCAGGTGTATCTCAAACTCAAATTCCTCCCAGGAAACACCAAAATCAGCCTTCAGTGCCAGTTTCATATGCTGCTGTTCCTACAACGAGTCATCAATCTCAACCCACAGCTGCACATTCGTTGCAAATGCCACAACAGCCTAAAGGGCATCTGACTCCCCAAGTAGCTCCAGCATCTGTTCCACAATCATCACAACTTCCACATATACCTCCACCCTCTGTTCATTCATCTTCACAGCCACTTCATCCAACTCAAATGCCAACTGCCTCGAGTCAGGCGCATCAACCATTGCAGACTCCTGGATTTTCACATATGCCTCTGCAACCACCATTGCCACCGCAGCCCAGACCACCTTCAGTGCAAACCTTCCATCCCCAATATCCCCCACCGATTGGTGCCAATTTAGGTTTTCAACATGCTGGTGGTGCTTCTCACAACCTTCCTCCGCCCATCTTTCATGCTGGTGCAAAACCTCCTAGTGTTGGATCTACGTTCCCACCAGGGCAGGCACTACTACCAAGTCAACAATCATCTCAGTCATCTTATCAGGTTGGAAATATACCATTTGGGTCTGATTTCAGCAGTCAAGCTGGAAATGCAATGCAAATTGATAGAGGGTCTTCTTGGATGCCTGGTCCCTCGGAGAATCTAGCACAGCATTCTGGTCCTCAGGGACCATCATCTATGGTTTCTGCTCAGATCGGTGCTGCTAATCAGCCTCCTCGGCCTCCTGCGTTGACACCAGACATGGAGAAGGCATTGCTTCAGCAGGTCATGAGTCTCACACCGGAGCAGATAAATCTCCTACCTCCGGAACAAAGAAATCAAGTGCTGCAACTGCAGCTGATGTTGCGTAAATGA
Protein sequence

>Msa0708050

MAGKQVSGEGLSANLAGMSKNQLYDIMSQMKNLIEQNQQQAKQILIQNPMLTKALFQAQIMLGMVQSQQAVPKVQPIAPQNNQQPVQPTQRPSVQPAPILPVQGGIQDQAGVSQTQIPPRKHQNQPSVPVSYAAVPTTSHQSQPTAAHSLQMPQQPKGHLTPQVAPASVPQSSQLPHIPPPSVHSSSQPLHPTQMPTASSQAHQPLQTPGFSHMPLQPPLPPQPRPPSVQTFHPQYPPPIGANLGFQHAGGASHNLPPPIFHAGAKPPSVGSTFPPGQALLPSQQSSQSSYQVGNIPFGSDFSSQAGNAMQIDRGSSWMPGPSENLAQHSGPQGPSSMVSAQIGAANQPPRPPALTPDMEKALLQQVMSLTPEQINLLPPEQRNQVLQLQLMLRK*