AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0130140

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0130140 MtrunA17_Chr1g0197351 99.378 482 3 0 1 482 1 482 0.0 998
Msa0130140 MtrunA17_Chr1g0197361 61.026 195 67 4 43 235 9 196 7.52e-74 243
Msa0130140 MtrunA17_Chr3g0092671 58.824 204 65 5 43 244 6 192 2.55e-73 241
Msa0130140 MtrunA17_Chr8g0364791 51.327 226 94 6 42 257 6 225 6.40e-67 221
Msa0130140 MtrunA17_Chr3g0130101 55.618 178 72 2 42 218 7 178 2.83e-65 214
Msa0130140 MtrunA17_Chr2g0309891 58.750 160 61 1 39 198 3 157 2.33e-62 206
Msa0130140 MtrunA17_Chr1g0201021 54.922 193 79 3 29 219 5 191 3.13e-62 212
Msa0130140 MtrunA17_Chr6g0481091 58.896 163 61 2 39 201 3 159 4.81e-61 199
Msa0130140 MtrunA17_Chr8g0384201 52.660 188 82 2 42 228 6 187 9.93e-61 206
Msa0130140 MtrunA17_Chr3g0109821 58.382 173 66 2 39 210 3 170 1.70e-60 209
Msa0130140 MtrunA17_Chr5g0433781 58.101 179 68 3 39 216 3 175 5.29e-59 205
Msa0130140 MtrunA17_Chr5g0405211 44.608 204 98 6 40 242 6 195 1.71e-53 183
Msa0130140 MtrunA17_Chr3g0128111 48.128 187 84 4 14 200 21 194 3.65e-53 179
Msa0130140 MtrunA17_Chr3g0128151 51.724 174 78 1 27 200 7 174 2.97e-52 186
Msa0130140 MtrunA17_Chr8g0372121 44.974 189 93 5 44 230 8 187 9.21e-52 177
Msa0130140 MtrunA17_Chr1g0200561 49.714 175 75 4 25 198 6 168 1.19e-51 178
Msa0130140 MtrunA17_Chr5g0400461 55.090 167 57 3 41 199 5 161 2.45e-51 177
Msa0130140 MtrunA17_Chr4g0018391 53.797 158 60 5 44 198 9 156 4.45e-51 177
Msa0130140 MtrunA17_Chr4g0017921 52.201 159 66 3 44 201 10 159 5.07e-51 177
Msa0130140 MtrunA17_Chr4g0056541 53.846 156 63 3 44 198 9 156 1.32e-50 176
Msa0130140 MtrunA17_Chr2g0309331 48.315 178 78 4 41 216 9 174 1.87e-50 175
Msa0130140 MtrunA17_Chr5g0428991 49.432 176 81 2 27 200 8 177 2.11e-50 181
Msa0130140 MtrunA17_Chr4g0042561 47.904 167 83 2 36 202 3 165 6.41e-50 171
Msa0130140 MtrunA17_Chr4g0047841 45.455 187 81 3 33 200 6 190 2.19e-48 169
Msa0130140 MtrunA17_Chr5g0398971 49.682 157 70 4 44 198 9 158 3.92e-48 169
Msa0130140 MtrunA17_Chr2g0318101 47.429 175 83 3 33 200 6 178 4.47e-48 169
Msa0130140 MtrunA17_Chr2g0318081 51.572 159 69 3 41 199 15 165 7.92e-48 168
Msa0130140 MtrunA17_Chr5g0417791 49.375 160 77 2 42 201 3 158 9.88e-48 165
Msa0130140 MtrunA17_Chr3g0124761 50.955 157 71 3 42 198 7 157 1.04e-47 166
Msa0130140 MtrunA17_Chr4g0054791 52.469 162 68 2 41 199 5 160 1.69e-47 166
Msa0130140 MtrunA17_Chr8g0346001 42.424 198 105 4 33 221 6 203 3.30e-47 169
Msa0130140 MtrunA17_Chr3g0091921 52.795 161 70 3 42 202 16 170 3.38e-47 165
Msa0130140 MtrunA17_Chr7g0252971 46.512 172 79 3 36 198 2 169 4.09e-47 166
Msa0130140 MtrunA17_Chr8g0359921 51.250 160 72 2 41 200 13 166 4.17e-47 166
Msa0130140 MtrunA17_Chr4g0060931 51.553 161 72 3 42 202 17 171 5.05e-47 166
Msa0130140 MtrunA17_Chr6g0484441 51.266 158 67 2 41 198 4 151 5.31e-47 165
Msa0130140 MtrunA17_Chr6g0453451 49.068 161 76 2 42 202 20 174 6.00e-46 162
Msa0130140 MtrunA17_Chr2g0316971 52.439 164 68 4 42 202 23 179 9.07e-46 164
Msa0130140 MtrunA17_Chr4g0076731 48.447 161 72 3 42 201 54 204 9.10e-46 165
Msa0130140 MtrunA17_Chr7g0253011 50.000 162 71 4 42 199 17 172 1.32e-45 163
Msa0130140 MtrunA17_Chr6g0461661 39.819 221 116 6 30 243 6 216 4.20e-45 162
Msa0130140 MtrunA17_Chr3g0139331 46.471 170 79 3 35 202 4 163 5.75e-45 160
Msa0130140 MtrunA17_Chr6g0453131 47.239 163 80 4 42 200 15 175 7.07e-45 161
Msa0130140 MtrunA17_Chr3g0130731 49.682 157 73 3 42 198 7 157 2.71e-44 157
Msa0130140 MtrunA17_Chr1g0183741 47.531 162 67 4 41 198 9 156 2.82e-44 157
Msa0130140 MtrunA17_Chr8g0361731 44.512 164 84 3 42 200 14 175 6.87e-44 159
Msa0130140 MtrunA17_Chr7g0214071 50.000 170 66 4 42 207 15 169 9.10e-44 154
Msa0130140 MtrunA17_Chr2g0326361 46.875 160 79 3 41 198 13 168 1.53e-43 156
Msa0130140 MtrunA17_Chr5g0417001 46.012 163 82 3 42 200 14 174 1.57e-43 158
Msa0130140 MtrunA17_Chr1g0147421 49.689 161 68 4 41 198 26 176 2.28e-43 157
Msa0130140 MtrunA17_Chr7g0261411 47.170 159 70 3 41 197 9 155 6.17e-43 153
Msa0130140 MtrunA17_Chr8g0384721 47.771 157 77 3 42 198 7 158 6.64e-43 153
Msa0130140 MtrunA17_Chr7g0263931 46.061 165 81 4 42 204 11 169 1.66e-42 153
Msa0130140 MtrunA17_Chr2g0312321 48.101 158 73 3 42 199 11 159 1.13e-41 150
Msa0130140 MtrunA17_Chr7g0217721 47.368 171 71 3 45 202 22 186 1.14e-40 149
Msa0130140 MtrunA17_Chr4g0038751 48.101 158 66 3 44 198 17 161 1.37e-40 147
Msa0130140 MtrunA17_Chr5g0442771 41.799 189 98 4 42 224 18 200 2.28e-40 147
Msa0130140 MtrunA17_Chr7g0217711 56.000 125 53 1 45 169 22 144 5.76e-40 142
Msa0130140 MtrunA17_Chr2g0311651 44.242 165 82 3 44 199 24 187 3.33e-39 144
Msa0130140 MtrunA17_Chr2g0311661 44.242 165 82 3 44 199 23 186 1.46e-38 142
Msa0130140 MtrunA17_Chr3g0144271 54.198 131 55 3 42 169 23 151 1.22e-36 140
Msa0130140 MtrunA17_Chr8g0385991 43.023 172 91 3 42 211 14 180 2.21e-36 134
Msa0130140 MtrunA17_Chr8g0345671 48.718 156 61 5 45 195 14 155 3.47e-36 138
Msa0130140 MtrunA17_Chr3g0131911 41.520 171 92 2 40 206 12 178 3.53e-33 125
Msa0130140 MtrunA17_Chr8g0345691 43.558 163 75 5 38 195 6 156 1.63e-32 128
Msa0130140 MtrunA17_Chr2g0321631 39.241 158 88 4 44 196 6 160 1.52e-31 121
Msa0130140 MtrunA17_Chr4g0026141 41.401 157 85 5 44 196 7 160 1.03e-30 119
Msa0130140 MtrunA17_Chr8g0345741 46.610 118 59 3 53 167 2 118 3.90e-30 115
Msa0130140 MtrunA17_Chr4g0050701 38.125 160 87 3 42 199 11 160 6.20e-29 112
Msa0130140 MtrunA17_Chr7g0266701 41.463 164 90 6 41 199 3 165 8.87e-29 114
Msa0130140 MtrunA17_Chr2g0321741 51.887 106 50 1 62 167 12 116 9.36e-29 116
Msa0130140 MtrunA17_Chr8g0345711 46.212 132 63 4 41 167 11 139 1.78e-28 110
Msa0130140 MtrunA17_Chr8g0345731 44.853 136 60 5 42 167 24 154 2.85e-27 107
Msa0130140 MtrunA17_Chr8g0345701 43.448 145 62 5 40 167 5 146 7.38e-27 106
Msa0130140 MtrunA17_Chr8g0345721 38.372 172 69 6 36 173 29 197 8.99e-27 107
Msa0130140 MtrunA17_Chr3g0113001 50.000 108 49 2 94 200 15 118 3.16e-25 105
Msa0130140 MtrunA17_Chr3g0113031 44.860 107 56 2 107 212 3 107 2.37e-21 93.6
Msa0130140 MtrunA17_Chr8g0384351 34.395 157 75 6 42 198 10 138 9.65e-21 89.7
Msa0130140 MtrunA17_Chr7g0243371 53.947 76 31 2 97 169 17 91 1.34e-19 84.3
Msa0130140 MtrunA17_Chr3g0130321 31.844 179 101 8 42 210 7 174 6.72e-17 79.3
Msa0130140 MtrunA17_Chr7g0251661 31.111 135 89 3 34 167 2 133 2.68e-16 76.3
Msa0130140 MtrunA17_Chr1g0194791 71.739 46 12 1 43 87 47 92 1.18e-15 72.8
Msa0130140 MtrunA17_Chr7g0251651 33.071 127 81 3 42 167 18 141 4.86e-15 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0130140 AT3G10480.1 47.485 497 181 17 1 476 1 438 1.24e-122 365
Msa0130140 AT3G10490.2 44.794 509 183 12 1 476 1 444 2.95e-121 362
Msa0130140 AT3G10480.2 47.082 497 182 17 1 476 1 437 6.53e-121 361
Msa0130140 AT3G10480.3 42.806 563 189 20 1 476 1 517 6.18e-112 341
Msa0130140 AT3G10490.1 63.223 242 60 4 1 233 1 222 2.90e-102 306
Msa0130140 AT5G04410.1 65.500 200 61 4 40 237 7 200 2.94e-85 273
Msa0130140 AT3G10500.1 66.286 175 52 2 40 213 7 175 2.74e-77 252
Msa0130140 AT3G10490.4 38.832 394 158 11 116 476 1 344 8.02e-66 216
Msa0130140 AT3G10490.3 38.832 394 158 11 116 476 1 344 8.02e-66 216
Msa0130140 AT3G17730.1 58.896 163 61 1 39 201 3 159 1.39e-62 204
Msa0130140 AT5G64060.1 45.382 249 124 3 40 287 4 241 2.02e-62 207
Msa0130140 AT1G34180.3 50.495 202 90 3 43 240 17 212 1.72e-60 205
Msa0130140 AT3G03200.1 61.875 160 56 1 39 198 3 157 5.48e-60 204
Msa0130140 AT1G34190.1 55.114 176 72 2 43 217 17 186 6.07e-60 206
Msa0130140 AT1G34180.1 50.495 202 90 3 43 240 17 212 1.39e-59 205
Msa0130140 AT5G17260.1 55.866 179 70 2 39 213 3 176 7.13e-59 201
Msa0130140 AT1G65910.1 58.537 164 62 1 39 202 3 160 9.09e-59 204
Msa0130140 AT1G34180.4 48.598 214 88 5 43 240 17 224 1.37e-58 200
Msa0130140 AT5G09330.5 54.696 181 75 2 40 219 4 178 3.57e-58 200
Msa0130140 AT5G09330.2 54.696 181 75 2 40 219 4 178 3.57e-58 200
Msa0130140 AT5G09330.4 54.696 181 75 2 40 219 4 178 3.57e-58 200
Msa0130140 AT5G09330.3 54.696 181 75 2 40 219 4 178 3.57e-58 200
Msa0130140 AT5G09330.1 54.696 181 75 2 40 219 4 178 3.57e-58 200
Msa0130140 AT1G34180.2 48.598 214 88 5 43 240 17 224 1.18e-57 201
Msa0130140 AT1G54330.1 59.627 161 56 1 39 199 3 154 8.97e-56 188
Msa0130140 AT1G32870.2 57.225 173 67 3 42 213 10 176 1.06e-53 189
Msa0130140 AT1G32870.1 57.225 173 67 3 42 213 10 176 1.25e-53 189
Msa0130140 AT5G46590.1 53.988 163 69 2 40 201 4 161 1.66e-53 182
Msa0130140 AT1G32870.3 57.225 173 67 3 42 213 46 212 3.59e-53 188
Msa0130140 AT5G24590.2 53.704 162 68 2 41 201 12 167 1.50e-52 184
Msa0130140 AT3G49530.2 53.086 162 69 3 41 201 12 167 5.67e-52 181
Msa0130140 AT2G18060.3 50.000 164 73 3 40 202 7 162 9.84e-52 179
Msa0130140 AT2G18060.1 50.000 164 73 3 40 202 7 162 9.84e-52 179
Msa0130140 AT3G49530.1 53.086 162 69 3 41 201 12 167 2.12e-51 181
Msa0130140 AT5G04395.1 54.601 163 59 4 26 173 11 173 4.10e-51 172
Msa0130140 AT1G33060.2 50.289 173 80 2 26 198 8 174 5.14e-51 184
Msa0130140 AT1G33060.1 54.430 158 66 2 41 198 23 174 6.67e-51 183
Msa0130140 AT4G36160.1 48.851 174 77 4 35 207 3 165 1.11e-50 177
Msa0130140 AT4G36160.3 48.851 174 77 4 35 207 3 165 1.11e-50 177
Msa0130140 AT4G36160.2 48.851 174 77 4 35 207 7 169 1.16e-50 177
Msa0130140 AT4G17980.1 52.469 162 71 2 40 199 4 161 3.08e-50 172
Msa0130140 AT4G10350.1 50.943 159 71 3 44 201 11 163 3.17e-50 175
Msa0130140 AT1G33280.1 49.686 159 70 2 44 201 10 159 3.17e-50 174
Msa0130140 AT1G71930.2 50.000 160 71 3 40 198 7 158 4.97e-50 174
Msa0130140 AT1G71930.1 50.000 160 71 3 40 198 7 158 4.97e-50 174
Msa0130140 AT4G17980.2 52.469 162 71 2 40 199 4 161 9.07e-50 172
Msa0130140 AT5G66300.1 49.390 164 75 3 41 203 11 167 9.36e-50 172
Msa0130140 AT1G79580.3 50.581 172 74 3 31 200 6 168 1.17e-49 174
Msa0130140 AT1G79580.5 50.581 172 74 3 31 200 6 168 1.17e-49 174
Msa0130140 AT1G79580.4 50.581 172 74 3 31 200 6 168 1.17e-49 174
Msa0130140 AT1G79580.2 50.581 172 74 3 31 200 6 168 1.17e-49 174
Msa0130140 AT1G79580.1 50.581 172 74 3 31 200 6 168 1.17e-49 174
Msa0130140 AT1G32770.1 48.193 166 81 2 40 200 14 179 4.55e-49 172
Msa0130140 AT4G27410.2 50.000 160 72 2 41 200 13 164 9.97e-49 169
Msa0130140 AT2G46770.1 44.751 181 92 2 29 201 3 183 1.49e-48 171
Msa0130140 AT1G12260.2 51.282 156 67 3 44 198 9 156 1.67e-48 170
Msa0130140 AT1G12260.1 51.282 156 67 3 44 198 9 156 2.03e-48 171
Msa0130140 AT4G35580.1 53.797 158 67 1 41 198 8 159 2.32e-48 174
Msa0130140 AT5G46590.2 57.037 135 57 1 40 173 4 138 2.44e-48 168
Msa0130140 AT5G07680.2 52.795 161 70 3 42 202 3 157 2.62e-48 169
Msa0130140 AT4G35580.2 53.797 158 67 1 41 198 8 159 3.55e-48 174
Msa0130140 AT4G35580.3 53.797 158 67 1 41 198 8 159 3.64e-48 174
Msa0130140 AT5G07680.1 52.174 161 71 2 42 202 17 171 5.25e-48 168
Msa0130140 AT3G04070.2 49.143 175 75 5 35 200 3 172 1.03e-47 168
Msa0130140 AT1G62700.1 51.923 156 66 3 44 198 9 156 1.54e-47 169
Msa0130140 AT1G62700.2 51.923 156 66 3 44 198 9 156 1.54e-47 169
Msa0130140 AT3G18400.1 51.875 160 64 3 41 198 4 152 1.69e-47 167
Msa0130140 AT5G61430.1 52.174 161 71 2 42 202 16 170 5.07e-47 166
Msa0130140 AT3G12977.1 48.148 162 77 2 41 202 17 171 9.55e-47 164
Msa0130140 AT5G62380.2 50.633 158 69 3 42 198 7 156 9.78e-47 166
Msa0130140 AT5G62380.1 50.633 158 69 3 42 198 7 156 9.78e-47 166
Msa0130140 AT2G24430.2 51.250 160 67 3 41 198 15 165 1.52e-46 164
Msa0130140 AT2G24430.1 51.250 160 67 3 41 198 15 165 1.52e-46 164
Msa0130140 AT4G27410.3 46.286 175 73 2 41 200 13 181 1.95e-46 164
Msa0130140 AT3G15500.1 51.266 158 69 3 41 198 13 162 2.46e-46 164
Msa0130140 AT3G04070.1 45.213 188 75 5 35 198 3 186 3.27e-46 164
Msa0130140 AT5G18270.2 53.125 160 68 4 42 200 21 174 5.01e-46 163
Msa0130140 AT3G61910.1 45.783 166 82 2 44 201 13 178 5.71e-46 163
Msa0130140 AT5G18270.1 53.125 160 68 4 42 200 21 174 8.07e-46 163
Msa0130140 AT5G39610.1 53.416 161 69 3 42 202 20 174 9.04e-46 161
Msa0130140 AT3G15510.1 50.000 162 72 3 46 200 21 180 1.15e-45 163
Msa0130140 AT1G52890.1 50.633 158 70 3 41 198 13 162 1.30e-45 162
Msa0130140 AT1G77450.1 48.734 158 75 3 44 201 12 163 1.45e-45 160
Msa0130140 AT1G32510.1 49.091 165 72 2 42 199 6 165 2.10e-45 160
Msa0130140 AT1G01720.1 46.369 179 87 4 42 216 7 180 2.88e-45 160
Msa0130140 AT1G61110.1 45.503 189 86 5 42 220 16 197 8.37e-45 160
Msa0130140 AT2G27300.1 51.282 156 62 3 40 195 12 153 8.58e-45 160
Msa0130140 AT1G69490.1 47.799 159 79 2 40 198 7 161 1.00e-44 158
Msa0130140 AT3G04060.1 50.314 159 72 3 42 199 20 172 1.08e-44 160
Msa0130140 AT2G33480.2 51.592 157 63 2 42 198 15 158 1.21e-44 157
Msa0130140 AT1G26870.1 48.171 164 78 3 42 200 16 177 1.83e-44 161
Msa0130140 AT3G44290.2 49.398 166 65 3 35 195 2 153 1.90e-44 156
Msa0130140 AT2G33480.1 50.955 157 66 2 42 198 15 160 3.62e-44 156
Msa0130140 AT3G29035.1 52.469 162 69 3 42 202 24 178 9.95e-44 157
Msa0130140 AT3G44290.1 49.398 166 65 3 35 195 2 153 1.27e-43 157
Msa0130140 AT5G53950.1 51.852 162 70 4 42 201 17 172 1.43e-43 158
Msa0130140 AT5G22290.1 45.930 172 80 2 24 195 3 161 1.48e-43 157
Msa0130140 AT2G02450.1 47.468 158 72 3 42 198 51 198 1.73e-43 158
Msa0130140 AT2G43000.1 48.387 155 73 2 44 198 20 167 1.79e-43 155
Msa0130140 AT1G56010.2 48.765 162 77 3 42 202 19 175 3.05e-43 155
Msa0130140 AT3G15170.1 49.375 160 73 4 44 201 22 175 3.10e-43 155
Msa0130140 AT2G02450.2 47.468 158 72 3 42 198 51 198 3.12e-43 158
Msa0130140 AT5G63790.1 47.799 159 77 4 41 198 49 202 4.88e-43 155
Msa0130140 AT5G63790.2 47.799 159 77 4 41 198 59 212 6.50e-43 155
Msa0130140 AT5G08790.1 48.428 159 76 4 41 198 6 159 1.89e-42 152
Msa0130140 AT5G39820.1 44.944 178 75 4 42 200 20 193 2.45e-42 154
Msa0130140 AT5G13180.1 50.000 166 69 4 42 205 14 167 2.94e-42 151
Msa0130140 AT1G76420.1 48.750 160 71 3 41 198 21 171 1.07e-41 152
Msa0130140 AT2G17040.1 47.468 158 67 4 44 198 8 152 5.72e-41 148
Msa0130140 AT1G52880.1 49.689 161 73 3 46 200 21 179 5.25e-40 147
Msa0130140 AT4G28530.1 45.506 178 65 5 40 198 8 172 1.38e-39 146
Msa0130140 AT3G12910.1 41.579 190 83 8 44 219 23 198 2.29e-34 131
Msa0130140 AT3G12977.2 51.887 106 46 1 98 203 19 119 2.43e-32 123
Msa0130140 AT1G56010.1 52.381 105 47 1 98 202 7 108 1.22e-30 119
Msa0130140 AT4G01520.1 45.038 131 65 4 45 169 7 136 1.05e-28 115
Msa0130140 AT5G61430.2 51.376 109 49 2 94 202 3 107 2.47e-28 114
Msa0130140 AT4G10350.2 49.515 103 46 2 99 201 20 116 2.60e-28 114
Msa0130140 AT4G01550.1 40.491 163 80 4 45 202 7 157 8.01e-28 115
Msa0130140 AT4G01540.3 45.802 131 64 4 45 169 7 136 8.11e-28 115
Msa0130140 AT4G01540.1 45.802 131 64 4 45 169 7 136 9.58e-28 115
Msa0130140 AT4G01540.2 45.802 131 64 4 45 169 7 136 1.03e-27 115
Msa0130140 AT3G04420.2 35.220 159 90 2 45 201 6 153 1.08e-27 112
Msa0130140 AT4G01540.4 45.802 131 64 4 45 169 7 136 1.18e-27 114
Msa0130140 AT5G22380.1 39.490 157 86 5 45 196 8 160 1.54e-27 110
Msa0130140 AT3G04420.1 35.220 159 90 2 45 201 6 153 2.91e-27 112
Msa0130140 AT3G44350.2 36.196 163 95 4 42 200 5 162 5.10e-27 109
Msa0130140 AT3G44350.1 40.299 134 76 3 42 171 5 138 1.46e-26 105
Msa0130140 AT1G02230.1 43.750 128 64 4 45 167 6 130 1.36e-24 105
Msa0130140 AT2G33480.3 49.020 102 46 1 97 198 8 103 1.48e-24 101
Msa0130140 AT1G01010.1 38.462 169 75 6 45 200 6 158 4.34e-24 104
Msa0130140 AT4G28530.2 44.361 133 52 4 40 153 8 137 4.98e-24 102
Msa0130140 AT1G02250.1 39.241 158 74 5 45 195 6 148 1.29e-23 102
Msa0130140 AT5G64530.1 36.095 169 84 5 41 199 2 156 5.82e-23 96.7
Msa0130140 AT5G64530.2 41.221 131 61 4 41 169 2 118 9.84e-23 95.1
Msa0130140 AT1G02220.1 34.615 156 82 4 45 196 6 145 1.98e-21 96.7
Msa0130140 AT2G43000.2 45.055 91 45 1 108 198 4 89 8.33e-19 85.1
Msa0130140 AT2G18060.2 45.122 82 37 2 121 202 1 74 5.97e-18 84.3
Msa0130140 AT5G50820.1 36.090 133 71 4 42 170 17 139 8.53e-16 76.3
Msa0130140 AT5G22290.2 47.945 73 26 1 123 195 2 62 2.45e-15 75.9
Msa0130140 AT3G04430.1 35.338 133 72 5 48 168 6 136 1.12e-14 73.2
Msa0130140 AT5G14000.2 32.308 130 82 2 42 169 15 140 3.55e-14 70.5
Msa0130140 AT5G14000.1 32.061 131 83 2 42 170 15 141 2.38e-13 69.3
Msa0130140 AT3G56530.1 33.846 130 81 4 41 167 51 178 5.63e-13 70.1

Find 163 sgRNAs with CRISPR-Local

Find 541 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAATCATTCTAATGTTTC+TGG 0.114557 1_3:-60199042 Msa0130140:CDS
TACCTGAAACGCAAGGTTTC+TGG 0.120223 1_3:-60203965 Msa0130140:CDS
TTCCAGAAACCTTGCGTTTC+AGG 0.148202 1_3:+60203963 None:intergenic
GTTATGTTTACAGTTAATTT+TGG 0.196332 1_3:-60198564 Msa0130140:three_prime_UTR
ACCCATTTGGTGAAGGAAAA+AGG 0.237118 1_3:+60204156 None:intergenic
GGTGGTAAAGATGGTGAATT+AGG 0.244295 1_3:+60204191 None:intergenic
AGGTATTGGCTTTGGGTTAT+CGG 0.265100 1_3:+60199098 None:intergenic
TAAATTTGAGGTATTGGCTT+TGG 0.265384 1_3:+60199090 None:intergenic
GTTGGTTGTGGTGGCAGATG+GGG 0.287064 1_3:+60204105 None:intergenic
GATGAGAAATCCTTAGGAAT+TGG 0.306387 1_3:-60198620 Msa0130140:exon
GGTTGGTTGTGGTGGCAGAT+GGG 0.309914 1_3:+60204104 None:intergenic
TTGGTTGTGGTGGCAGATGG+GGG 0.318306 1_3:+60204106 None:intergenic
CCACCAACTTCCCTTGCTCC+TGG 0.322466 1_3:-60204028 Msa0130140:CDS
GGGTTGGTTGTGGTGGCAGA+TGG 0.326166 1_3:+60204103 None:intergenic
CAGACTTGTTGAGGAAGAAT+TGG 0.330744 1_3:-60203354 Msa0130140:CDS
GAGCATGGATCCTGACTGTT+AGG 0.340222 1_3:+60199006 None:intergenic
TCCAGAAACATTAGAATGAT+TGG 0.341328 1_3:+60199041 None:intergenic
AGTGCATTGGACAAGAAGTA+TGG 0.341837 1_3:-60203545 Msa0130140:CDS
AGGAAGAATTGGAGAGGGAG+AGG 0.353596 1_3:-60203343 Msa0130140:CDS
TGGCTTTGGGTTATCGGTTG+GGG 0.354074 1_3:+60199104 None:intergenic
TTGGCTTTGGGTTATCGGTT+GGG 0.362139 1_3:+60199103 None:intergenic
AAAAGGGGTGGTGGTGGCGG+TGG 0.369930 1_3:+60204173 None:intergenic
AAATTTGAGGTATTGGCTTT+GGG 0.370279 1_3:+60199091 None:intergenic
AATTGGAGAGGGAGAGGGCT+GGG 0.371112 1_3:-60203337 Msa0130140:CDS
GAAGGATCAGGAATGGTTCC+TGG 0.374359 1_3:-60202924 Msa0130140:CDS
GGTGCATACCGTTGTCCATT+TGG 0.375191 1_3:+60202969 None:intergenic
CTGACGGTAAGAGAACAAAT+TGG 0.376713 1_3:-60203391 Msa0130140:CDS
AAATTAACTGTAAACATAAC+TGG 0.379630 1_3:+60198567 None:intergenic
TAAGAATTTCTTGTCATTGA+AGG 0.380662 1_3:-60204284 Msa0130140:five_prime_UTR
GAGAGGGAGAGGGCTGGGGC+TGG 0.382302 1_3:-60203332 Msa0130140:CDS
GTTGAAGAAGAGTGGGAAGA+AGG 0.405733 1_3:-60202942 Msa0130140:CDS
TCTTCAACCCCACGGTCCTT+AGG 0.407296 1_3:+60203444 None:intergenic
ATGAACAGGGCCACTCTTCA+AGG 0.407496 1_3:-60203509 Msa0130140:CDS
AGACGCAGATGGCGGTCAAC+AGG 0.412382 1_3:+60202864 None:intergenic
TGGGGAAGGGTTGGTTGTGG+TGG 0.412548 1_3:+60204096 None:intergenic
TTGGACAAGAAGTATGGAAA+TGG 0.417128 1_3:-60203539 Msa0130140:CDS
ATTGGCTTTGGGTTATCGGT+TGG 0.426011 1_3:+60199102 None:intergenic
TTAACGCTTCGTGTCTATCA+AGG 0.430891 1_3:+60204304 None:intergenic
GAAGAGTGGGAAGAAGGATC+AGG 0.432033 1_3:-60202936 Msa0130140:CDS
TCCCACTCTTCTTCAACAAA+AGG 0.434809 1_3:+60202948 None:intergenic
ATGAGAAATCCTTAGGAATT+GGG 0.438123 1_3:-60198619 Msa0130140:exon
GAGGCTCTTCGTGACCCATT+TGG 0.440465 1_3:+60204143 None:intergenic
GGCTGGACCCTCTCAGCCAC+AGG 0.444725 1_3:-60203315 Msa0130140:intron
GTCCTTAGGTCATGCTTCAC+TGG 0.450996 1_3:+60203458 None:intergenic
CCTAAGAGAAACGGAAAAGA+TGG 0.452564 1_3:+60204226 None:intergenic
CAATTTGTTCTCTTACCGTC+AGG 0.453627 1_3:+60203392 None:intergenic
TGACAGCAGCAGCAGTTGTC+GGG 0.454117 1_3:+60198953 None:intergenic
GATGATGATGAGAAATCCTT+AGG 0.454383 1_3:-60198626 Msa0130140:exon
ACCGCCATCTGCGTCTTGAA+TGG 0.456045 1_3:-60202857 Msa0130140:CDS
TGGACAAGAAGTATGGAAAT+GGG 0.460782 1_3:-60203538 Msa0130140:CDS
GCAGACAGAAAATGTTTCTT+CGG 0.462378 1_3:+60198913 None:intergenic
AATAACATTGGGCCTCCAAA+TGG 0.464203 1_3:-60202984 Msa0130140:CDS
TCGATTCAAGTGATTCTAGC+AGG 0.464978 1_3:+60198875 None:intergenic
AAAATACCACTCCTGGTCTC+TGG 0.466296 1_3:+60203571 None:intergenic
AGAAAATGTTTCTTCGGAGC+AGG 0.466898 1_3:+60198919 None:intergenic
GAATTGGAGAGGGAGAGGGC+TGG 0.467265 1_3:-60203338 Msa0130140:CDS
GGTGGTGGCGGTGGTAAAGA+TGG 0.468577 1_3:+60204182 None:intergenic
CAAGGGTACTGGAAAGCTAC+TGG 0.470409 1_3:-60203491 Msa0130140:CDS
AAAAGATGGGTCCTTGATTG+AGG 0.473031 1_3:+60204240 None:intergenic
TGTTGCTTGACCCTCAATCA+AGG 0.478413 1_3:-60204251 Msa0130140:five_prime_UTR
GGGCCACTCTTCAAGGGTAC+TGG 0.478484 1_3:-60203502 Msa0130140:CDS
ATGTTTCTTCGGAGCAGGTT+TGG 0.480031 1_3:+60198924 None:intergenic
TTCATTCCACCCTAACAGTC+AGG 0.487133 1_3:-60199016 Msa0130140:CDS
GTGACAGCAGCAGCAGTTGT+CGG 0.492417 1_3:+60198952 None:intergenic
GAGTGGGGAAGGGTTGGTTG+TGG 0.492703 1_3:+60204093 None:intergenic
AGGAAGAAATCATGTTGTGC+AGG 0.503320 1_3:-60202811 Msa0130140:intron
CAGGAGCAAGGGAAGTTGGT+GGG 0.503619 1_3:+60204029 None:intergenic
TTCTCTTACCGTCAGGAGCA+CGG 0.510815 1_3:+60203399 None:intergenic
ATTGGAGAGGGAGAGGGCTG+GGG 0.513068 1_3:-60203336 Msa0130140:CDS
TGACGGTAAGAGAACAAATT+GGG 0.514361 1_3:-60203390 Msa0130140:CDS
AAGGATCAGGAATGGTTCCT+GGG 0.522130 1_3:-60202923 Msa0130140:CDS
ACTGAAACTGTGAGTGGGGA+AGG 0.523145 1_3:+60204082 None:intergenic
AACTGTGAGTGGGGAAGGGT+TGG 0.526120 1_3:+60204087 None:intergenic
GGAAGAATTGGAGAGGGAGA+GGG 0.531584 1_3:-60203342 Msa0130140:CDS
CAATACCTCAAATTTACAAA+AGG 0.532623 1_3:-60199083 Msa0130140:CDS
GCCTTCTGCTTCTGCTTCTG+CGG 0.532660 1_3:-60204053 Msa0130140:CDS
GCATACCGTTGTCCATTTGG+AGG 0.534396 1_3:+60202972 None:intergenic
TTGATGTACTTTGCAACACT+CGG 0.534652 1_3:+60198784 None:intergenic
ACAGAAGCTTGGTGTTGAGA+AGG 0.537600 1_3:-60198743 Msa0130140:CDS
AAACCAGGAGCAAGGGAAGT+TGG 0.539842 1_3:+60204025 None:intergenic
GGGGCTGAGCCTGTGAGTAA+TGG 0.540169 1_3:-60202903 Msa0130140:CDS
AGCAATAGCATCAAATCTGA+AGG 0.541393 1_3:+60203937 None:intergenic
ATGACAAGTTCTTCATCAGT+GGG 0.542348 1_3:+60203992 None:intergenic
AGAATCACTTGAATCGAAGA+AGG 0.542425 1_3:-60198869 Msa0130140:CDS
GCCGCAGAAGCAGAAGCAGA+AGG 0.544079 1_3:+60204052 None:intergenic
GTGGTAAAGATGGTGAATTA+GGG 0.544180 1_3:+60204192 None:intergenic
TGTTTCACAAGAATAACATT+GGG 0.544352 1_3:-60202995 Msa0130140:CDS
TGTTGAGGAAGAATTGGAGA+GGG 0.544892 1_3:-60203348 Msa0130140:CDS
ATCTTCTTGCTGTGTGCAAG+AGG 0.546342 1_3:-60199203 Msa0130140:CDS
GGTGGAGTTTCATGCAATGA+AGG 0.546700 1_3:-60202831 Msa0130140:CDS
GAAGCAGAAGCAGAAGGCGA+TGG 0.547423 1_3:+60204058 None:intergenic
TCAGCGCAGCCTAAGAGAAA+CGG 0.547803 1_3:+60204217 None:intergenic
GGCTTTGGGTTATCGGTTGG+GGG 0.551932 1_3:+60199105 None:intergenic
TTCGCCAGGTCAAAATCTGC+CGG 0.556147 1_3:+60198826 None:intergenic
AAGGCTGAAGACCAGAGACC+AGG 0.556150 1_3:-60203582 Msa0130140:CDS
GGCAGCTTGTTCACATCAAG+TGG 0.556553 1_3:+60199240 None:intergenic
CAGAGTGAGACACAGAAGCT+TGG 0.557413 1_3:-60198754 Msa0130140:CDS
GTGTTTCACAAGAATAACAT+TGG 0.558703 1_3:-60202996 Msa0130140:CDS
AATCTCACCTGTGGCTGAGA+GGG 0.561129 1_3:+60203308 None:intergenic
GGACTGGAGAATGTTAATCA+TGG 0.565652 1_3:+60198687 None:intergenic
GAGATCACTCCCAATTCCTA+AGG 0.566456 1_3:+60198610 None:intergenic
AAACCACACCTCAGTTCAGC+CGG 0.567970 1_3:-60198845 Msa0130140:CDS
TTACTCACAGGCTCAGCCCC+AGG 0.568758 1_3:+60202906 None:intergenic
GAAACCTAAAACCAGGAGCA+AGG 0.569063 1_3:+60204017 None:intergenic
CTTCGTGACCCATTTGGTGA+AGG 0.570250 1_3:+60204149 None:intergenic
CGGGAGAGTTGTCGCTGCAG+TGG 0.572953 1_3:+60198972 None:intergenic
TGTCGCTGCAGTGGTTATTG+TGG 0.575009 1_3:+60198981 None:intergenic
TGAGGGTCAAGCAACAAATG+AGG 0.575063 1_3:+60204258 None:intergenic
AAAGATGGGTCCTTGATTGA+GGG 0.578115 1_3:+60204241 None:intergenic
AGCATGGATCCTGACTGTTA+GGG 0.580746 1_3:+60199007 None:intergenic
TACCTCAAATTTACAAAAGG+CGG 0.580806 1_3:-60199080 Msa0130140:CDS
CGATTCAAGTGATTCTAGCA+GGG 0.581841 1_3:+60198876 None:intergenic
AATGACAAGTTCTTCATCAG+TGG 0.585466 1_3:+60203991 None:intergenic
CCAGGAGCAAGGGAAGTTGG+TGG 0.586031 1_3:+60204028 None:intergenic
AACTGGTACATCATCATACA+AGG 0.587563 1_3:+60198584 None:intergenic
GTGGTTATTGTGGACGAGCA+TGG 0.588687 1_3:+60198991 None:intergenic
CATAGCGGCCGTGCTCCTGA+CGG 0.589241 1_3:-60203407 Msa0130140:CDS
TTGTTGAGGAAGAATTGGAG+AGG 0.590719 1_3:-60203349 Msa0130140:CDS
AAGCATGACCTAAGGACCGT+GGG 0.591696 1_3:-60203452 Msa0130140:CDS
AAACCTAAAACCAGGAGCAA+GGG 0.592028 1_3:+60204018 None:intergenic
GTCCAGTGAAGCATGACCTA+AGG 0.593027 1_3:-60203460 Msa0130140:CDS
CGTGGGGTTGAAGAAGACTC+TGG 0.595548 1_3:-60203435 Msa0130140:CDS
GACAAGAAGTATGGAAATGG+GGG 0.600004 1_3:-60203536 Msa0130140:CDS
CGTTCCATTCAAGACGCAGA+TGG 0.603501 1_3:+60202853 None:intergenic
CTGAAACTGTGAGTGGGGAA+GGG 0.604955 1_3:+60204083 None:intergenic
TTTCCAGTACCCTTGAAGAG+TGG 0.605704 1_3:+60203499 None:intergenic
AGGAGCAAGGGAAGTTGGTG+GGG 0.605772 1_3:+60204030 None:intergenic
CACACGATTCAAGATTCGCC+AGG 0.607792 1_3:+60198812 None:intergenic
CTCACAGGACCATTACTCAC+AGG 0.609740 1_3:+60202894 None:intergenic
ATGGTACTGAAACTGTGAGT+GGG 0.611208 1_3:+60204077 None:intergenic
GCAATAGCATCAAATCTGAA+GGG 0.612782 1_3:+60203938 None:intergenic
GAGGGTCAAGCAACAAATGA+GGG 0.615619 1_3:+60204259 None:intergenic
CTAAGAGAAACGGAAAAGAT+GGG 0.618091 1_3:+60204227 None:intergenic
AAATCTCACCTGTGGCTGAG+AGG 0.618188 1_3:+60203307 None:intergenic
AAAATCTGCCGGCTGAACTG+AGG 0.619043 1_3:+60198837 None:intergenic
TCTTCTTGCTGTGTGCAAGA+GGG 0.619397 1_3:-60199202 Msa0130140:CDS
AGTAATGGTCCTGTGAGTAA+TGG 0.621405 1_3:-60202888 Msa0130140:CDS
TATCTACAAGAGTGAACCAT+GGG 0.622125 1_3:-60203906 Msa0130140:CDS
GCATGAGTACAGACTTGTTG+AGG 0.623966 1_3:-60203363 Msa0130140:CDS
GTGGGAAGAAGGATCAGGAA+TGG 0.625194 1_3:-60202931 Msa0130140:CDS
TCCATTCAAGACGCAGATGG+CGG 0.626079 1_3:+60202856 None:intergenic
TGAACAGGGCCACTCTTCAA+GGG 0.626821 1_3:-60203508 Msa0130140:CDS
GGACAAGAAGTATGGAAATG+GGG 0.631649 1_3:-60203537 Msa0130140:CDS
CATTTATTACCTGAAACGCA+AGG 0.633311 1_3:-60203972 Msa0130140:CDS
GTGGGGTGAAACCTAAAACC+AGG 0.639047 1_3:+60204010 None:intergenic
TCAACAGGACCATTACTCAC+AGG 0.640806 1_3:+60202879 None:intergenic
AAATCTCAGCAAAGAGAACG+AGG 0.650884 1_3:-60198656 Msa0130140:CDS
CTGCCGGCTGAACTGAGGTG+TGG 0.655152 1_3:+60198842 None:intergenic
TGAAGACCAGAGACCAGGAG+TGG 0.658962 1_3:-60203577 Msa0130140:CDS
ATGGATCCTGACTGTTAGGG+TGG 0.663696 1_3:+60199010 None:intergenic
AGGATCAGGAATGGTTCCTG+GGG 0.666000 1_3:-60202922 Msa0130140:CDS
GAAGCATGACCTAAGGACCG+TGG 0.670328 1_3:-60203453 Msa0130140:CDS
CTGCGTCTTGAATGGAACGG+TGG 0.671731 1_3:-60202849 Msa0130140:CDS
CAGAGTCTTCTTCAACCCCA+CGG 0.674792 1_3:+60203436 None:intergenic
ATATCTACAAGAGTGAACCA+TGG 0.689492 1_3:-60203907 Msa0130140:CDS
ATGTACTTTGCAACACTCGG+AGG 0.704212 1_3:+60198787 None:intergenic
TTGGGCCTCCAAATGGACAA+CGG 0.705935 1_3:-60202977 Msa0130140:CDS
TGGTACTGAAACTGTGAGTG+GGG 0.714391 1_3:+60204078 None:intergenic
CATCTGCGTCTTGAATGGAA+CGG 0.717625 1_3:-60202852 Msa0130140:CDS
AAGACTCTGGTGTTTCATAG+CGG 0.718209 1_3:-60203422 Msa0130140:CDS
GATGGTACTGAAACTGTGAG+TGG 0.721748 1_3:+60204076 None:intergenic
TGACAAGTTCTTCATCAGTG+GGG 0.741273 1_3:+60203993 None:intergenic
AGCATGACCTAAGGACCGTG+GGG 0.767258 1_3:-60203451 Msa0130140:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGTTTTTAATTATTGAAA+TGG - chr1_3:60198978-60198997 Msa0130140:CDS 10.0%
!!! TTGTTTTTAATTATTGAAAT+GGG - chr1_3:60198979-60198998 Msa0130140:CDS 10.0%
!! ATATCAAAATTTATTAGTTA+GGG + chr1_3:60200661-60200680 None:intergenic 10.0%
!! TATATCAAAATTTATTAGTT+AGG + chr1_3:60200662-60200681 None:intergenic 10.0%
!!! GTATTTATTTTTTATTTTCA+AGG + chr1_3:60201114-60201133 None:intergenic 10.0%
!!! TTTTTGAAGTTTATTTTTTC+TGG - chr1_3:60198911-60198930 Msa0130140:CDS 15.0%
!!! TTTTGAAGTTTATTTTTTCT+GGG - chr1_3:60198912-60198931 Msa0130140:CDS 15.0%
!!! TTATCTTGGTTAAATTTTAA+TGG - chr1_3:60199008-60199027 Msa0130140:CDS 15.0%
!!! TATCTTGGTTAAATTTTAAT+GGG - chr1_3:60199009-60199028 Msa0130140:CDS 15.0%
!!! TAGTTTTTTATGATGATTTT+AGG - chr1_3:60199045-60199064 Msa0130140:CDS 15.0%
!!! AGTTTTTTATGATGATTTTA+GGG - chr1_3:60199046-60199065 Msa0130140:CDS 15.0%
!!! TAGCATTATTTGTTTTTATT+CGG - chr1_3:60200189-60200208 Msa0130140:intron 15.0%
!!! TACATTTTTTTTTTTGTTCT+TGG - chr1_3:60202125-60202144 Msa0130140:intron 15.0%
!!! ACATTTTTTTTTTTGTTCTT+GGG - chr1_3:60202126-60202145 Msa0130140:intron 15.0%
!!! ATTTATATCCAAGTTTATTT+TGG - chr1_3:60202623-60202642 Msa0130140:intron 15.0%
!!! TCTCAATTTTTGTTTGATAA+AGG - chr1_3:60198883-60198902 Msa0130140:CDS 20.0%
!!! TTTAATTTAGGTTAACGTTA+GGG - chr1_3:60198943-60198962 Msa0130140:CDS 20.0%
!!! AATTTTGTTTAGATAAGTCA+AGG - chr1_3:60199120-60199139 Msa0130140:CDS 20.0%
!! TAAGTAACAATAGACAATTT+GGG + chr1_3:60199575-60199594 None:intergenic 20.0%
!! TTAAGTAACAATAGACAATT+TGG + chr1_3:60199576-60199595 None:intergenic 20.0%
!! AAAAGAAGAAAATACATAAC+TGG + chr1_3:60200229-60200248 None:intergenic 20.0%
!! AACATGTTAAATTAAAACTC+CGG + chr1_3:60200306-60200325 None:intergenic 20.0%
!! TGTACAATAATAATGTTATC+CGG - chr1_3:60200346-60200365 Msa0130140:intron 20.0%
!!! TTTTGATATACGTTTTTGTT+TGG - chr1_3:60200672-60200691 Msa0130140:intron 20.0%
!!! TTTGATATACGTTTTTGTTT+GGG - chr1_3:60200673-60200692 Msa0130140:intron 20.0%
!! AGAAGAAAAAATTATGAATG+AGG + chr1_3:60201194-60201213 None:intergenic 20.0%
!!! CTATTTCTTTTTCAGTTAAA+TGG + chr1_3:60201396-60201415 None:intergenic 20.0%
!!! AGTTAGTTATTTTAATTGCT+AGG - chr1_3:60202280-60202299 Msa0130140:intron 20.0%
!!! GTTAGTTATTTTAATTGCTA+GGG - chr1_3:60202281-60202300 Msa0130140:intron 20.0%
!! AAATTCATACTAAATACCTA+GGG + chr1_3:60202318-60202337 None:intergenic 20.0%
!! ATTTGACTAATTAGTTGTTT+AGG - chr1_3:60202415-60202434 Msa0130140:intron 20.0%
!! TTTGACTAATTAGTTGTTTA+GGG - chr1_3:60202416-60202435 Msa0130140:intron 20.0%
!! TCTAAATACCAAGAAAAATA+CGG + chr1_3:60203174-60203193 None:intergenic 20.0%
!! AAATTAACTGTAAACATAAC+TGG + chr1_3:60204157-60204176 None:intergenic 20.0%
!!! GTTATGTTTACAGTTAATTT+TGG - chr1_3:60204157-60204176 Msa0130140:exon 20.0%
!!! AGATGACAATTTTTAACAAT+GGG + chr1_3:60204296-60204315 None:intergenic 20.0%
!!! AAGATGACAATTTTTAACAA+TGG + chr1_3:60204297-60204316 None:intergenic 20.0%
! TAAGAATTTCTTGTCATTGA+AGG - chr1_3:60198437-60198456 Msa0130140:three_prime_UTR 25.0%
!! GTTTAATTTAGGTTAACGTT+AGG - chr1_3:60198942-60198961 Msa0130140:CDS 25.0%
! GTTTAATGTGTTAATGTGAA+TGG - chr1_3:60199087-60199106 Msa0130140:CDS 25.0%
! ACACAAAATCATACAGTTTA+GGG + chr1_3:60199463-60199482 None:intergenic 25.0%
! AACACAAAATCATACAGTTT+AGG + chr1_3:60199464-60199483 None:intergenic 25.0%
!! TAAACTGTATGATTTTGTGT+TGG - chr1_3:60199463-60199482 Msa0130140:intron 25.0%
! CATTGTTATATTATTACAGC+TGG - chr1_3:60199643-60199662 Msa0130140:intron 25.0%
! TGTTTCACAAGAATAACATT+GGG - chr1_3:60199726-60199745 Msa0130140:intron 25.0%
! GTGAAAAAGTAGTTGAAATA+TGG - chr1_3:60200096-60200115 Msa0130140:intron 25.0%
!!! TCAAACTCATAAATTTGCTA+AGG - chr1_3:60200151-60200170 Msa0130140:intron 25.0%
!!! CAAACTCATAAATTTGCTAA+GGG - chr1_3:60200152-60200171 Msa0130140:intron 25.0%
!!! TTTTTTGTTTCGAGAAAGAA+AGG + chr1_3:60200517-60200536 None:intergenic 25.0%
!!! TCATCAAAATTTTGATTGTG+CGG + chr1_3:60200621-60200640 None:intergenic 25.0%
!!! ACAATCAAAATTTTGATGAC+TGG - chr1_3:60200622-60200641 Msa0130140:intron 25.0%
!!! CAATCAAAATTTTGATGACT+GGG - chr1_3:60200623-60200642 Msa0130140:intron 25.0%
! TATATGGTATACTTGCAATA+TGG - chr1_3:60200971-60200990 Msa0130140:intron 25.0%
! TTGGAGATATTTGGAAATTA+TGG - chr1_3:60201307-60201326 Msa0130140:intron 25.0%
! AGATATTTGGAAATTATGGA+CGG - chr1_3:60201311-60201330 Msa0130140:intron 25.0%
! TATGTTCTGTCAATAATTCA+GGG + chr1_3:60201543-60201562 None:intergenic 25.0%
! TTATGTTCTGTCAATAATTC+AGG + chr1_3:60201544-60201563 None:intergenic 25.0%
!! AGCTTCAATAATGCTTTTAT+GGG - chr1_3:60201736-60201755 Msa0130140:intron 25.0%
! AATTCATACTAAATACCTAG+GGG + chr1_3:60202317-60202336 None:intergenic 25.0%
! CAAATTCATACTAAATACCT+AGG + chr1_3:60202319-60202338 None:intergenic 25.0%
! TTGACTAATTAGTTGTTTAG+GGG - chr1_3:60202417-60202436 Msa0130140:intron 25.0%
!!! TCCAAGTTTATTTTGGATAA+CGG - chr1_3:60202630-60202649 Msa0130140:intron 25.0%
!!! TTTTTCTTTAGAGAAGTCAA+GGG - chr1_3:60202872-60202891 Msa0130140:CDS 25.0%
! CATAATGTCAACATACAAAA+GGG + chr1_3:60203282-60203301 None:intergenic 25.0%
! ACATAATGTCAACATACAAA+AGG + chr1_3:60203283-60203302 None:intergenic 25.0%
! TATGTTGACATTATGTATGT+TGG - chr1_3:60203287-60203306 Msa0130140:intron 25.0%
! TAGATATACAACAAGTTAGA+AGG + chr1_3:60203376-60203395 None:intergenic 25.0%
!!! CTTTTGTAAATTTGAGGTAT+TGG + chr1_3:60203640-60203659 None:intergenic 25.0%
! CAATACCTCAAATTTACAAA+AGG - chr1_3:60203638-60203657 Msa0130140:intron 25.0%
!!! TGGGCTGTTTTGTTTAATTT+AGG - chr1_3:60198931-60198950 Msa0130140:CDS 30.0%
!!! GAAATGGGTTTTGTTTATCT+TGG - chr1_3:60198994-60199013 Msa0130140:CDS 30.0%
TAATGTGTTAATGTGAATGG+TGG - chr1_3:60199090-60199109 Msa0130140:CDS 30.0%
AATTTGTAAAATCTCACCTG+TGG + chr1_3:60199425-60199444 None:intergenic 30.0%
! ACAATAGACAATTTGGGTTT+GGG + chr1_3:60199569-60199588 None:intergenic 30.0%
! AACAATAGACAATTTGGGTT+TGG + chr1_3:60199570-60199589 None:intergenic 30.0%
GTGTTTCACAAGAATAACAT+TGG - chr1_3:60199725-60199744 Msa0130140:intron 30.0%
!! TTACTTTTGTCGATATGCAA+TGG - chr1_3:60199991-60200010 Msa0130140:intron 30.0%
!!! ACTTTTTCACAAACACGTAA+TGG + chr1_3:60200086-60200105 None:intergenic 30.0%
!! TCATAAATTTGCTAAGGGAT+TGG - chr1_3:60200157-60200176 Msa0130140:intron 30.0%
!! CATAAATTTGCTAAGGGATT+GGG - chr1_3:60200158-60200177 Msa0130140:intron 30.0%
GACACAATATAAAAGTAGAC+CGG + chr1_3:60200368-60200387 None:intergenic 30.0%
TTGATGTTCCCTAAGTTATA+CGG - chr1_3:60200537-60200556 Msa0130140:intron 30.0%
AGATATTGTCTCCTTCAATA+GGG + chr1_3:60200705-60200724 None:intergenic 30.0%
AAGATATTGTCTCCTTCAAT+AGG + chr1_3:60200706-60200725 None:intergenic 30.0%
CACTCATTTAAGAAAGCTAA+AGG + chr1_3:60200741-60200760 None:intergenic 30.0%
ATACCATATAACCTGTGAAA+CGG + chr1_3:60200961-60200980 None:intergenic 30.0%
!!! AAGGGCTTTTTAGAGTATTT+AGG - chr1_3:60201009-60201028 Msa0130140:intron 30.0%
!!! GCTTTTTAGAGTATTTAGGT+TGG - chr1_3:60201013-60201032 Msa0130140:intron 30.0%
AGTCAATGTAATATGACCAA+CGG - chr1_3:60201056-60201075 Msa0130140:intron 30.0%
! TCAAATTAGTTGACTTAGTC+TGG - chr1_3:60201079-60201098 Msa0130140:intron 30.0%
! CAAATTAGTTGACTTAGTCT+GGG - chr1_3:60201080-60201099 Msa0130140:intron 30.0%
! AAATTAGTTGACTTAGTCTG+GGG - chr1_3:60201081-60201100 Msa0130140:intron 30.0%
! TTTTCTGAACAAGAATAGTG+TGG + chr1_3:60201164-60201183 None:intergenic 30.0%
! GGAATTGGTAAGTTGAAATT+TGG - chr1_3:60201239-60201258 Msa0130140:intron 30.0%
! TTGGTAAGTTGAAATTTGGT+CGG - chr1_3:60201243-60201262 Msa0130140:intron 30.0%
AGAAGTTGTTTGGAGATATT+TGG - chr1_3:60201298-60201317 Msa0130140:intron 30.0%
AAATCGATAGGTACAAATCA+TGG - chr1_3:60201464-60201483 Msa0130140:intron 30.0%
TTATTGACAGAACATAAGTG+AGG - chr1_3:60201547-60201566 Msa0130140:intron 30.0%
TATTGACAGAACATAAGTGA+GGG - chr1_3:60201548-60201567 Msa0130140:intron 30.0%
! ATTTTTGTAGAAAGACTGAC+TGG - chr1_3:60201576-60201595 Msa0130140:intron 30.0%
! TTTTTGTAGAAAGACTGACT+GGG - chr1_3:60201577-60201596 Msa0130140:intron 30.0%
! TACCTTTTCTCATTGCTTAT+TGG + chr1_3:60201661-60201680 None:intergenic 30.0%
TCTTACTATGTCCAATCAAA+CGG + chr1_3:60201698-60201717 None:intergenic 30.0%
! CAGCTTCAATAATGCTTTTA+TGG - chr1_3:60201735-60201754 Msa0130140:intron 30.0%
! GCTTCAATAATGCTTTTATG+GGG - chr1_3:60201737-60201756 Msa0130140:intron 30.0%
! CTTCAATAATGCTTTTATGG+GGG - chr1_3:60201738-60201757 Msa0130140:intron 30.0%
! TTCAATAATGCTTTTATGGG+GGG - chr1_3:60201739-60201758 Msa0130140:intron 30.0%
ATGGTAAACTTGAAGACAAA+GGG + chr1_3:60202088-60202107 None:intergenic 30.0%
! TTTGTCTTCAAGTTTACCAT+GGG - chr1_3:60202088-60202107 Msa0130140:intron 30.0%
!!! TTTTTTGTTCTTGGGTTGTT+TGG - chr1_3:60202134-60202153 Msa0130140:intron 30.0%
CGATTAAAGGAAAAACAACT+TGG - chr1_3:60202191-60202210 Msa0130140:intron 30.0%
TATGTTCAAATTTGATGTCC+TGG + chr1_3:60202223-60202242 None:intergenic 30.0%
AGGACATCAAATTTGAACAT+AGG - chr1_3:60202222-60202241 Msa0130140:intron 30.0%
ATCAAATTTGAACATAGGTG+AGG - chr1_3:60202227-60202246 Msa0130140:intron 30.0%
AGTATGAATTTGATGAAGAC+TGG - chr1_3:60202327-60202346 Msa0130140:intron 30.0%
AAATTGCTAGCAAACTTTCA+GGG + chr1_3:60202454-60202473 None:intergenic 30.0%
!! CCAACTTTAAAATCTCAACA+GGG + chr1_3:60202487-60202506 None:intergenic 30.0%
!! TCCAACTTTAAAATCTCAAC+AGG + chr1_3:60202488-60202507 None:intergenic 30.0%
ACCGTTATCCAAAATAAACT+TGG + chr1_3:60202634-60202653 None:intergenic 30.0%
!! AAACAAAGTTAAGGTACTGT+TGG + chr1_3:60202727-60202746 None:intergenic 30.0%
TACTTCACGAAACAAAGTTA+AGG + chr1_3:60202736-60202755 None:intergenic 30.0%
AGAATTTATCCTTGTTAGGA+AGG - chr1_3:60202799-60202818 Msa0130140:intron 30.0%
GAATTTATCCTTGTTAGGAA+GGG - chr1_3:60202800-60202819 Msa0130140:intron 30.0%
!! GTTTTTCTTTAGAGAAGTCA+AGG - chr1_3:60202871-60202890 Msa0130140:CDS 30.0%
!! AGTATAATCCACTGATTTCT+AGG - chr1_3:60203148-60203167 Msa0130140:intron 30.0%
GTTGGATAATTCAGAATTGA+TGG - chr1_3:60203305-60203324 Msa0130140:intron 30.0%
!!! AGAAGATTTTGAGTTTCGAT+CGG + chr1_3:60203505-60203524 None:intergenic 30.0%
!! AAATTTGAGGTATTGGCTTT+GGG + chr1_3:60203633-60203652 None:intergenic 30.0%
!! TAAATTTGAGGTATTGGCTT+TGG + chr1_3:60203634-60203653 None:intergenic 30.0%
TACCTCAAATTTACAAAAGG+CGG - chr1_3:60203641-60203660 Msa0130140:intron 30.0%
TCCAATCATTCTAATGTTTC+TGG - chr1_3:60203679-60203698 Msa0130140:intron 30.0%
TCCAGAAACATTAGAATGAT+TGG + chr1_3:60203683-60203702 None:intergenic 30.0%
ATGAGAAATCCTTAGGAATT+GGG - chr1_3:60204102-60204121 Msa0130140:CDS 30.0%
CTAAGAGAAACGGAAAAGAT+GGG + chr1_3:60198497-60198516 None:intergenic 35.0%
GTGGTAAAGATGGTGAATTA+GGG + chr1_3:60198532-60198551 None:intergenic 35.0%
ATGACAAGTTCTTCATCAGT+GGG + chr1_3:60198732-60198751 None:intergenic 35.0%
AATGACAAGTTCTTCATCAG+TGG + chr1_3:60198733-60198752 None:intergenic 35.0%
CATTTATTACCTGAAACGCA+AGG - chr1_3:60198749-60198768 Msa0130140:CDS 35.0%
GCAATAGCATCAAATCTGAA+GGG + chr1_3:60198786-60198805 None:intergenic 35.0%
AGCAATAGCATCAAATCTGA+AGG + chr1_3:60198787-60198806 None:intergenic 35.0%
ATATCTACAAGAGTGAACCA+TGG - chr1_3:60198814-60198833 Msa0130140:CDS 35.0%
TATCTACAAGAGTGAACCAT+GGG - chr1_3:60198815-60198834 Msa0130140:CDS 35.0%
TTCTAACCAAAAAGATCCCA+TGG + chr1_3:60198834-60198853 None:intergenic 35.0%
! ATTTAGGTTAACGTTAGGGT+TGG - chr1_3:60198947-60198966 Msa0130140:CDS 35.0%
! TTTAGGTTAACGTTAGGGTT+GGG - chr1_3:60198948-60198967 Msa0130140:CDS 35.0%
!!! GTGGTATTTTTTCAGTGCAT+TGG - chr1_3:60199163-60199182 Msa0130140:CDS 35.0%
! TTGGACAAGAAGTATGGAAA+TGG - chr1_3:60199182-60199201 Msa0130140:CDS 35.0%
! TGGACAAGAAGTATGGAAAT+GGG - chr1_3:60199183-60199202 Msa0130140:CDS 35.0%
TGACGGTAAGAGAACAAATT+GGG - chr1_3:60199331-60199350 Msa0130140:intron 35.0%
!! GAAGCATTGTTGTTTATACG+TGG - chr1_3:60199541-60199560 Msa0130140:intron 35.0%
TTGTGCATTTCTCTGTTGTA+TGG - chr1_3:60199676-60199695 Msa0130140:intron 35.0%
! ACCTTTTGTTGAAGAAGAGT+GGG - chr1_3:60199772-60199791 Msa0130140:intron 35.0%
GAAATATGGAAAGTTGCTGT+CGG - chr1_3:60200110-60200129 Msa0130140:intron 35.0%
AAATTCATGACCAGAATGTC+CGG - chr1_3:60200284-60200303 Msa0130140:intron 35.0%
AATTAAAACTCCGGACATTC+TGG + chr1_3:60200297-60200316 None:intergenic 35.0%
TTTCTCCTTTCCATTTATGC+CGG - chr1_3:60200390-60200409 Msa0130140:intron 35.0%
CATAAATGGAAAGGAGAAAG+CGG + chr1_3:60200389-60200408 None:intergenic 35.0%
TTTCTCCTTTCCATTTATGC+CGG - chr1_3:60200390-60200409 Msa0130140:intron 35.0%
AGAAAAGTAGACGAACATGA+AGG + chr1_3:60200477-60200496 None:intergenic 35.0%
!! TTCGTCTACTTTTCTATCCT+TGG - chr1_3:60200482-60200501 Msa0130140:intron 35.0%
! CTTTTCTATCCTTGGCTTAA+TGG - chr1_3:60200490-60200509 Msa0130140:intron 35.0%
CCAAAAAGCCGTATAACTTA+GGG + chr1_3:60200548-60200567 None:intergenic 35.0%
! CCTAAGTTATACGGCTTTTT+GGG - chr1_3:60200546-60200565 Msa0130140:intron 35.0%
! CTAAGTTATACGGCTTTTTG+GGG - chr1_3:60200547-60200566 Msa0130140:intron 35.0%
!!! AAAATTTTGATTGTGCGGAC+AGG + chr1_3:60200616-60200635 None:intergenic 35.0%
! ACAAAGATAAGAAGTGCACA+AGG + chr1_3:60200772-60200791 None:intergenic 35.0%
GTGCACTTCTTATCTTTGTA+TGG - chr1_3:60200773-60200792 Msa0130140:intron 35.0%
ATTCTAGATTGTCTATCCCT+GGG + chr1_3:60200824-60200843 None:intergenic 35.0%
! TAGACAATCTAGAATCACTG+AGG - chr1_3:60200829-60200848 Msa0130140:intron 35.0%
! AGACAATCTAGAATCACTGA+GGG - chr1_3:60200830-60200849 Msa0130140:intron 35.0%
AAGTCAACTAATTTGACCGT+TGG + chr1_3:60201075-60201094 None:intergenic 35.0%
TGTGGTATCTCCAACATAAA+GGG + chr1_3:60201146-60201165 None:intergenic 35.0%
! TGGTAAGTTGAAATTTGGTC+GGG - chr1_3:60201244-60201263 Msa0130140:intron 35.0%
!!! ACCATTTTTTCGACATGTTG+AGG - chr1_3:60201271-60201290 Msa0130140:intron 35.0%
!! TTGAGGCTTTAGAAGTTGTT+TGG - chr1_3:60201288-60201307 Msa0130140:intron 35.0%
ACAAGTACTCCCTTAATACA+CGG + chr1_3:60201350-60201369 None:intergenic 35.0%
!! ATAGCTACCTACTTGTTGTA+TGG - chr1_3:60201412-60201431 Msa0130140:intron 35.0%
! TTTAAGATGCTGCTAGATTC+AGG + chr1_3:60201447-60201466 None:intergenic 35.0%
TAGCAGCATCTTAAATCGAT+AGG - chr1_3:60201452-60201471 Msa0130140:intron 35.0%
CTACGTCATATCGATAGAAT+GGG + chr1_3:60201501-60201520 None:intergenic 35.0%
TCTACGTCATATCGATAGAA+TGG + chr1_3:60201502-60201521 None:intergenic 35.0%
TGACGTAGATGATGAAAACA+AGG - chr1_3:60201513-60201532 Msa0130140:intron 35.0%
! TTTTGTAGAAAGACTGACTG+GGG - chr1_3:60201578-60201597 Msa0130140:intron 35.0%
TGGTGATATTAGCATATGTG+AGG - chr1_3:60201615-60201634 Msa0130140:intron 35.0%
CACCAATAAGCAATGAGAAA+AGG - chr1_3:60201656-60201675 Msa0130140:intron 35.0%
AAATATCAGCACCGTTTGAT+TGG - chr1_3:60201684-60201703 Msa0130140:intron 35.0%
TGATTGGACATAGTAAGAAC+CGG - chr1_3:60201700-60201719 Msa0130140:intron 35.0%
ATAGTAAGAACCGGTTAGAA+AGG - chr1_3:60201709-60201728 Msa0130140:intron 35.0%
! TCAATAATGCTTTTATGGGG+GGG - chr1_3:60201740-60201759 Msa0130140:intron 35.0%
ACGGTAACAATTTAAGCCTT+TGG - chr1_3:60201769-60201788 Msa0130140:intron 35.0%
ATTTGAAGACGCTAATCCAA+AGG + chr1_3:60201788-60201807 None:intergenic 35.0%
!! TTGGATTAGCGTCTTCAAAT+TGG - chr1_3:60201788-60201807 Msa0130140:intron 35.0%
! TCGGTTTACATTTTCGAAAG+AGG + chr1_3:60201862-60201881 None:intergenic 35.0%
! GTGGCATTGAGTTGTTTAAT+CGG + chr1_3:60201881-60201900 None:intergenic 35.0%
CATGGTAAACTTGAAGACAA+AGG + chr1_3:60202089-60202108 None:intergenic 35.0%
! CTTTGTCTTCAAGTTTACCA+TGG - chr1_3:60202087-60202106 Msa0130140:intron 35.0%
! TTCAAGTTTACCATGGGAAT+TGG - chr1_3:60202094-60202113 Msa0130140:intron 35.0%
AAGGAAAAACAACTTGGTAG+AGG - chr1_3:60202197-60202216 Msa0130140:intron 35.0%
AAATTTGAACATAGGTGAGG+AGG - chr1_3:60202230-60202249 Msa0130140:intron 35.0%
TACTAAATACCTAGGGGTTT+GGG + chr1_3:60202311-60202330 None:intergenic 35.0%
ATACTAAATACCTAGGGGTT+TGG + chr1_3:60202312-60202331 None:intergenic 35.0%
GAAATTGCTAGCAAACTTTC+AGG + chr1_3:60202455-60202474 None:intergenic 35.0%
AAAATCTCAACAGGGAAAGT+CGG + chr1_3:60202479-60202498 None:intergenic 35.0%
!!! CCCTGTTGAGATTTTAAAGT+TGG - chr1_3:60202484-60202503 Msa0130140:intron 35.0%
! AGTTATGAAGTAGCTTGTAG+AGG - chr1_3:60202563-60202582 Msa0130140:intron 35.0%
! TAGCTTGTAGAGGATGAATT+GGG - chr1_3:60202594-60202613 Msa0130140:intron 35.0%
TGTCTGGGAAAATTGTACTT+TGG - chr1_3:60202773-60202792 Msa0130140:intron 35.0%
GTCTGGGAAAATTGTACTTT+GGG - chr1_3:60202774-60202793 Msa0130140:intron 35.0%
TCTGGGAAAATTGTACTTTG+GGG - chr1_3:60202775-60202794 Msa0130140:intron 35.0%
GGGAAGAATTTATCCTTGTT+AGG - chr1_3:60202795-60202814 Msa0130140:intron 35.0%
ACATGAATGACCTCTAATGA+GGG + chr1_3:60202853-60202872 None:intergenic 35.0%
AACATGAATGACCTCTAATG+AGG + chr1_3:60202854-60202873 None:intergenic 35.0%
GGTGATTGATAGAAATTCAG+TGG - chr1_3:60202921-60202940 Msa0130140:CDS 35.0%
TTAGAAAACAAGTCACGAAG+TGG + chr1_3:60203095-60203114 None:intergenic 35.0%
! TTTCTAGGCCGTATTTTTCT+TGG - chr1_3:60203163-60203182 Msa0130140:intron 35.0%
AAGGGACTTCAAATAGATTG+AGG + chr1_3:60203264-60203283 None:intergenic 35.0%
TAACATTTCGTCATGTGTAC+AGG - chr1_3:60203435-60203454 Msa0130140:CDS 35.0%
!!! ATCAAGTGGAGTTTTGTTGT+TGG + chr1_3:60203470-60203489 None:intergenic 35.0%
! TGAGTTTTCATCACCTGAAA+AGG - chr1_3:60203552-60203571 Msa0130140:CDS 35.0%
! TGCTTAGATTCATCCTTTTC+AGG + chr1_3:60203568-60203587 None:intergenic 35.0%
GCAGACAGAAAATGTTTCTT+CGG + chr1_3:60203811-60203830 None:intergenic 35.0%
AGAATCACTTGAATCGAAGA+AGG - chr1_3:60203852-60203871 Msa0130140:intron 35.0%
TTGATGTACTTTGCAACACT+CGG + chr1_3:60203940-60203959 None:intergenic 35.0%
! TTTGCTGAGATTTTCAACAC+GGG + chr1_3:60204058-60204077 None:intergenic 35.0%
! CTTTGCTGAGATTTTCAACA+CGG + chr1_3:60204059-60204078 None:intergenic 35.0%
! GATGATGATGAGAAATCCTT+AGG - chr1_3:60204095-60204114 Msa0130140:CDS 35.0%
GATGAGAAATCCTTAGGAAT+TGG - chr1_3:60204101-60204120 Msa0130140:CDS 35.0%
AACTGGTACATCATCATACA+AGG + chr1_3:60204140-60204159 None:intergenic 35.0%
AAAGATGGGTCCTTGATTGA+GGG + chr1_3:60198483-60198502 None:intergenic 40.0%
AAAAGATGGGTCCTTGATTG+AGG + chr1_3:60198484-60198503 None:intergenic 40.0%
CCTAAGAGAAACGGAAAAGA+TGG + chr1_3:60198498-60198517 None:intergenic 40.0%
! CCATCTTTTCCGTTTCTCTT+AGG - chr1_3:60198495-60198514 Msa0130140:three_prime_UTR 40.0%
GGTGGTAAAGATGGTGAATT+AGG + chr1_3:60198533-60198552 None:intergenic 40.0%
! CCATTTGGTGAAGGAAAAAG+GGG + chr1_3:60198566-60198585 None:intergenic 40.0%
! CCCATTTGGTGAAGGAAAAA+GGG + chr1_3:60198567-60198586 None:intergenic 40.0%
! CCCTTTTTCCTTCACCAAAT+GGG - chr1_3:60198564-60198583 Msa0130140:three_prime_UTR 40.0%
! ACCCATTTGGTGAAGGAAAA+AGG + chr1_3:60198568-60198587 None:intergenic 40.0%
! ATGGTACTGAAACTGTGAGT+GGG + chr1_3:60198647-60198666 None:intergenic 40.0%
AAACCTAAAACCAGGAGCAA+GGG + chr1_3:60198706-60198725 None:intergenic 40.0%
TGACAAGTTCTTCATCAGTG+GGG + chr1_3:60198731-60198750 None:intergenic 40.0%
! AGTGAACCATGGGATCTTTT+TGG - chr1_3:60198825-60198844 Msa0130140:CDS 40.0%
TGTGTTAATGTGAATGGTGG+TGG - chr1_3:60199093-60199112 Msa0130140:CDS 40.0%
CACTGAAAAAATACCACTCC+TGG + chr1_3:60199160-60199179 None:intergenic 40.0%
AGTGCATTGGACAAGAAGTA+TGG - chr1_3:60199176-60199195 Msa0130140:CDS 40.0%
! GGACAAGAAGTATGGAAATG+GGG - chr1_3:60199184-60199203 Msa0130140:CDS 40.0%
! GACAAGAAGTATGGAAATGG+GGG - chr1_3:60199185-60199204 Msa0130140:CDS 40.0%
AAGACTCTGGTGTTTCATAG+CGG - chr1_3:60199299-60199318 Msa0130140:intron 40.0%
! CAATTTGTTCTCTTACCGTC+AGG + chr1_3:60199332-60199351 None:intergenic 40.0%
CTGACGGTAAGAGAACAAAT+TGG - chr1_3:60199330-60199349 Msa0130140:intron 40.0%
!! CAGACTTGTTGAGGAAGAAT+TGG - chr1_3:60199367-60199386 Msa0130140:intron 40.0%
TTGTTGAGGAAGAATTGGAG+AGG - chr1_3:60199372-60199391 Msa0130140:intron 40.0%
TGTTGAGGAAGAATTGGAGA+GGG - chr1_3:60199373-60199392 Msa0130140:intron 40.0%
TGTTGTCGTTGCAGTTACTT+AGG - chr1_3:60199488-60199507 Msa0130140:intron 40.0%
GTTGTCGTTGCAGTTACTTA+GGG - chr1_3:60199489-60199508 Msa0130140:intron 40.0%
ATTTCTCTGTTGTATGGAGC+AGG - chr1_3:60199682-60199701 Msa0130140:intron 40.0%
AATAACATTGGGCCTCCAAA+TGG - chr1_3:60199737-60199756 Msa0130140:intron 40.0%
! CACCTTTTGTTGAAGAAGAG+TGG - chr1_3:60199771-60199790 Msa0130140:intron 40.0%
TCCCACTCTTCTTCAACAAA+AGG + chr1_3:60199776-60199795 None:intergenic 40.0%
AGTAATGGTCCTGTGAGTAA+TGG - chr1_3:60199833-60199852 Msa0130140:intron 40.0%
AGGAAGAAATCATGTTGTGC+AGG - chr1_3:60199910-60199929 Msa0130140:intron 40.0%
TAGACGAACATGAAGGACAA+GGG + chr1_3:60200470-60200489 None:intergenic 40.0%
AAGAAAGGTCCATTAAGCCA+AGG + chr1_3:60200502-60200521 None:intergenic 40.0%
! CCCTAAGTTATACGGCTTTT+TGG - chr1_3:60200545-60200564 Msa0130140:intron 40.0%
CCCAAAAAGCCGTATAACTT+AGG + chr1_3:60200549-60200568 None:intergenic 40.0%
GATTCTAGATTGTCTATCCC+TGG + chr1_3:60200825-60200844 None:intergenic 40.0%
TTGCAAACCAAGCTCAATGT+AGG - chr1_3:60200866-60200885 Msa0130140:intron 40.0%
CATATAACCTGTGAAACGGT+TGG + chr1_3:60200957-60200976 None:intergenic 40.0%
CAACCGTTTCACAGGTTATA+TGG - chr1_3:60200955-60200974 Msa0130140:intron 40.0%
TATACTTGCAATATGGCTCC+TGG - chr1_3:60200978-60200997 Msa0130140:intron 40.0%
GTGTGGTATCTCCAACATAA+AGG + chr1_3:60201147-60201166 None:intergenic 40.0%
GAGAAATTACTCACGTGTCA+TGG - chr1_3:60201218-60201237 Msa0130140:intron 40.0%
TTACTCACGTGTCATGGAAT+TGG - chr1_3:60201224-60201243 Msa0130140:intron 40.0%
GCCTCAACATGTCGAAAAAA+TGG + chr1_3:60201275-60201294 None:intergenic 40.0%
TGGAAATTATGGACGGTCAT+TGG - chr1_3:60201318-60201337 Msa0130140:intron 40.0%
!! CTACCTACTTGTTGTATGGT+GGG - chr1_3:60201416-60201435 Msa0130140:intron 40.0%
TTCTCATTGCTTATTGGTGC+CGG + chr1_3:60201655-60201674 None:intergenic 40.0%
! TTTTATGGGGGGGTAAAAGA+CGG - chr1_3:60201750-60201769 Msa0130140:intron 40.0%
AAACAGGGTAGAAGGAGAAA+AGG + chr1_3:60202029-60202048 None:intergenic 40.0%
! ACCCTGTTTCTTGCCAATTT+CGG - chr1_3:60202040-60202059 Msa0130140:intron 40.0%
AACTTGAAGACAAAGGGAAG+AGG + chr1_3:60202082-60202101 None:intergenic 40.0%
TTACCATGGGAATTGGATGA+AGG - chr1_3:60202101-60202120 Msa0130140:intron 40.0%
TAACCTTCATCCAATTCCCA+TGG + chr1_3:60202107-60202126 None:intergenic 40.0%
! GTTCTTGGGTTGTTTGGTAA+CGG - chr1_3:60202140-60202159 Msa0130140:intron 40.0%
ACTAAATACCTAGGGGTTTG+GGG + chr1_3:60202310-60202329 None:intergenic 40.0%
ATCTTCAACGCATTCAGAGA+TGG + chr1_3:60202535-60202554 None:intergenic 40.0%
! GTAGCTTGTAGAGGATGAAT+TGG - chr1_3:60202593-60202612 Msa0130140:intron 40.0%
GTTCGATGGTACATCTAGAA+AGG + chr1_3:60202674-60202693 None:intergenic 40.0%
TTGGACACAGACTTGCAATA+AGG + chr1_3:60202708-60202727 None:intergenic 40.0%
GTATTTCTCCCTTCCTAACA+AGG + chr1_3:60202811-60202830 None:intergenic 40.0%
! GACTACTGAGGCTTTTGTTA+AGG - chr1_3:60202900-60202919 Msa0130140:CDS 40.0%
AGCTGGGTATAATCCTCTTT+GGG - chr1_3:60203005-60203024 Msa0130140:CDS 40.0%
GTTTGTTCTCATACCCAAAG+AGG + chr1_3:60203021-60203040 None:intergenic 40.0%
ACAAGTCACGAAGTGGAAAT+AGG + chr1_3:60203088-60203107 None:intergenic 40.0%
AAATACGGCCTAGAAATCAG+TGG + chr1_3:60203159-60203178 None:intergenic 40.0%
! TTCTTGTTCCTCTTTTCTCG+CGG - chr1_3:60203194-60203213 Msa0130140:intron 40.0%
!! AGGTATTGGCTTTGGGTTAT+CGG + chr1_3:60203626-60203645 None:intergenic 40.0%
AGAAAATGTTTCTTCGGAGC+AGG + chr1_3:60203805-60203824 None:intergenic 40.0%
! GAAACATTTTCTGTCTGCAC+TGG - chr1_3:60203813-60203832 Msa0130140:intron 40.0%
CGATTCAAGTGATTCTAGCA+GGG + chr1_3:60203848-60203867 None:intergenic 40.0%
TCGATTCAAGTGATTCTAGC+AGG + chr1_3:60203849-60203868 None:intergenic 40.0%
GGACTGGAGAATGTTAATCA+TGG + chr1_3:60204037-60204056 None:intergenic 40.0%
AAATCTCAGCAAAGAGAACG+AGG - chr1_3:60204065-60204084 Msa0130140:CDS 40.0%
GAGGGTCAAGCAACAAATGA+GGG + chr1_3:60198465-60198484 None:intergenic 45.0%
TGAGGGTCAAGCAACAAATG+AGG + chr1_3:60198466-60198485 None:intergenic 45.0%
! TGTTGCTTGACCCTCAATCA+AGG - chr1_3:60198470-60198489 Msa0130140:three_prime_UTR 45.0%
TTTGGTGAAGGAAAAAGGGG+TGG + chr1_3:60198563-60198582 None:intergenic 45.0%
! CCCCTTTTTCCTTCACCAAA+TGG - chr1_3:60198563-60198582 Msa0130140:three_prime_UTR 45.0%
! TGGTACTGAAACTGTGAGTG+GGG + chr1_3:60198646-60198665 None:intergenic 45.0%
! GATGGTACTGAAACTGTGAG+TGG + chr1_3:60198648-60198667 None:intergenic 45.0%
GAAACCTAAAACCAGGAGCA+AGG + chr1_3:60198707-60198726 None:intergenic 45.0%
TACCTGAAACGCAAGGTTTC+TGG - chr1_3:60198756-60198775 Msa0130140:CDS 45.0%
TTCCAGAAACCTTGCGTTTC+AGG + chr1_3:60198761-60198780 None:intergenic 45.0%
AAAATACCACTCCTGGTCTC+TGG + chr1_3:60199153-60199172 None:intergenic 45.0%
! AGAAGTATGGAAATGGGGGA+AGG - chr1_3:60199189-60199208 Msa0130140:CDS 45.0%
AAATGGGGGAAGGATGAACA+GGG - chr1_3:60199199-60199218 Msa0130140:CDS 45.0%
TTTCCAGTACCCTTGAAGAG+TGG + chr1_3:60199225-60199244 None:intergenic 45.0%
!! GCATGAGTACAGACTTGTTG+AGG - chr1_3:60199358-60199377 Msa0130140:intron 45.0%
!! GTTTGCTATGTGCTGCAATG+TGG - chr1_3:60199619-60199638 Msa0130140:intron 45.0%
GTTGAAGAAGAGTGGGAAGA+AGG - chr1_3:60199779-60199798 Msa0130140:intron 45.0%
AAGGATCAGGAATGGTTCCT+GGG - chr1_3:60199798-60199817 Msa0130140:intron 45.0%
TCAACAGGACCATTACTCAC+AGG + chr1_3:60199845-60199864 None:intergenic 45.0%
CATCTGCGTCTTGAATGGAA+CGG - chr1_3:60199869-60199888 Msa0130140:intron 45.0%
GGTGGAGTTTCATGCAATGA+AGG - chr1_3:60199890-60199909 Msa0130140:intron 45.0%
AAAAAGACTGGGAGAGAACG+AGG + chr1_3:60199941-60199960 None:intergenic 45.0%
! TCGTTCTCTCCCAGTCTTTT+TGG - chr1_3:60199940-60199959 Msa0130140:intron 45.0%
! CGTTCTCTCCCAGTCTTTTT+GGG - chr1_3:60199941-60199960 Msa0130140:intron 45.0%
GATACGCACCCAAAAAGACT+GGG + chr1_3:60199952-60199971 None:intergenic 45.0%
AGATACGCACCCAAAAAGAC+TGG + chr1_3:60199953-60199972 None:intergenic 45.0%
TGTTCATCACGTGCTAGTTC+TGG - chr1_3:60200322-60200341 Msa0130140:intron 45.0%
GTAGACGAACATGAAGGACA+AGG + chr1_3:60200471-60200490 None:intergenic 45.0%
!!! TATACGGCTTTTTGGGGTTG+AGG - chr1_3:60200553-60200572 Msa0130140:intron 45.0%
!!! ATACGGCTTTTTGGGGTTGA+GGG - chr1_3:60200554-60200573 Msa0130140:intron 45.0%
TTGGGCAGAATCCCTATTGA+AGG - chr1_3:60200691-60200710 Msa0130140:intron 45.0%
TAGATTGTCTATCCCTGGGA+AGG + chr1_3:60200820-60200839 None:intergenic 45.0%
CAAACCAAGCTCAATGTAGG+TGG - chr1_3:60200869-60200888 Msa0130140:intron 45.0%
GTTTCCACCTACATTGAGCT+TGG + chr1_3:60200876-60200895 None:intergenic 45.0%
ATGTAGGTGGAAACTCCATG+TGG - chr1_3:60200882-60200901 Msa0130140:intron 45.0%
!!! CGTGTGTGTTGGTTTTGAAC+TGG - chr1_3:60200908-60200927 Msa0130140:intron 45.0%
!!! GTGTTGGTTTTGAACTGGCT+CGG - chr1_3:60200913-60200932 Msa0130140:intron 45.0%
AAAAGCCCTTGCAAATAGCC+AGG + chr1_3:60200999-60201018 None:intergenic 45.0%
! AGTTGACTTAGTCTGGGGAT+CGG - chr1_3:60201086-60201105 Msa0130140:intron 45.0%
CCAACATAAAGGGATCACTC+TGG + chr1_3:60201136-60201155 None:intergenic 45.0%
CCAGAGTGATCCCTTTATGT+TGG - chr1_3:60201133-60201152 Msa0130140:intron 45.0%
TTGGATCCTGCCGTGTATTA+AGG - chr1_3:60201337-60201356 Msa0130140:intron 45.0%
TGGATCCTGCCGTGTATTAA+GGG - chr1_3:60201338-60201357 Msa0130140:intron 45.0%
!! GCTACCTACTTGTTGTATGG+TGG - chr1_3:60201415-60201434 Msa0130140:intron 45.0%
GATCCCACCATACAACAAGT+AGG + chr1_3:60201422-60201441 None:intergenic 45.0%
AAGACTGACTGGGGTAGATA+AGG - chr1_3:60201587-60201606 Msa0130140:intron 45.0%
CTGGGGTAGATAAGGAAGAA+TGG - chr1_3:60201595-60201614 Msa0130140:intron 45.0%
TGAGGTTATCACTGATCAGC+CGG - chr1_3:60201633-60201652 Msa0130140:intron 45.0%
GAAGCTGACACCTTTCTAAC+CGG + chr1_3:60201722-60201741 None:intergenic 45.0%
ATCATGGCCAGAAGAAGTTG+GGG + chr1_3:60201833-60201852 None:intergenic 45.0%
CATCATGGCCAGAAGAAGTT+GGG + chr1_3:60201834-60201853 None:intergenic 45.0%
CAACTTCTTCTGGCCATGAT+GGG - chr1_3:60201833-60201852 Msa0130140:intron 45.0%
!! ATGGAGGGGTTTTGTAGAAG+AGG + chr1_3:60201903-60201922 None:intergenic 45.0%
GAGATGGGGAATTAATGGAG+GGG + chr1_3:60201917-60201936 None:intergenic 45.0%
CGAGATGGGGAATTAATGGA+GGG + chr1_3:60201918-60201937 None:intergenic 45.0%
TCGAGATGGGGAATTAATGG+AGG + chr1_3:60201919-60201938 None:intergenic 45.0%
GACTCGAGATGGGGAATTAA+TGG + chr1_3:60201922-60201941 None:intergenic 45.0%
! AACCTTCTTGACTCGAGATG+GGG + chr1_3:60201931-60201950 None:intergenic 45.0%
! CAACCTTCTTGACTCGAGAT+GGG + chr1_3:60201932-60201951 None:intergenic 45.0%
! TCAACCTTCTTGACTCGAGA+TGG + chr1_3:60201933-60201952 None:intergenic 45.0%
TTGGCAAGAAACAGGGTAGA+AGG + chr1_3:60202037-60202056 None:intergenic 45.0%
CCCGAAATTGGCAAGAAACA+GGG + chr1_3:60202044-60202063 None:intergenic 45.0%
! CCCTGTTTCTTGCCAATTTC+GGG - chr1_3:60202041-60202060 Msa0130140:intron 45.0%
! CCTGTTTCTTGCCAATTTCG+GGG - chr1_3:60202042-60202061 Msa0130140:intron 45.0%
GAAAGACTGAACCCCGAAAT+TGG + chr1_3:60202056-60202075 None:intergenic 45.0%
TGAAGACAAAGGGAAGAGGA+GGG + chr1_3:60202078-60202097 None:intergenic 45.0%
TTGAAGACAAAGGGAAGAGG+AGG + chr1_3:60202079-60202098 None:intergenic 45.0%
!! TTGGGTTGTTTGGTAACGGA+AGG - chr1_3:60202144-60202163 Msa0130140:intron 45.0%
CTAGTGGAACAGGCGATTAA+AGG - chr1_3:60202178-60202197 Msa0130140:intron 45.0%
AAAACAACTTGGTAGAGGCC+AGG - chr1_3:60202202-60202221 Msa0130140:intron 45.0%
CTAGCAAACTTTCAGGGCTT+TGG + chr1_3:60202448-60202467 None:intergenic 45.0%
AACCCCATATGATCCAAGTC+TGG - chr1_3:60202507-60202526 Msa0130140:intron 45.0%
AGCCAGACTTGGATCATATG+GGG + chr1_3:60202512-60202531 None:intergenic 45.0%
GAGCCAGACTTGGATCATAT+GGG + chr1_3:60202513-60202532 None:intergenic 45.0%
!!! AGGACTCGTTTTGAGTTCGA+TGG + chr1_3:60202688-60202707 None:intergenic 45.0%
TTTCGTGAAGTATACCCGCA+TGG - chr1_3:60202744-60202763 Msa0130140:intron 45.0%
TTCGTGAAGTATACCCGCAT+GGG - chr1_3:60202745-60202764 Msa0130140:intron 45.0%
TTTCCAACCACCCTCATTAG+AGG - chr1_3:60202840-60202859 Msa0130140:CDS 45.0%
TGAATGACCTCTAATGAGGG+TGG + chr1_3:60202850-60202869 None:intergenic 45.0%
TCAAGGGTAGTTGACTACTG+AGG - chr1_3:60202888-60202907 Msa0130140:CDS 45.0%
AAATAGCCAGAACTCTGAGC+TGG - chr1_3:60202988-60203007 Msa0130140:CDS 45.0%
AATAGCCAGAACTCTGAGCT+GGG - chr1_3:60202989-60203008 Msa0130140:CDS 45.0%
TTATACCCAGCTCAGAGTTC+TGG + chr1_3:60202997-60203016 None:intergenic 45.0%
GAGCTGGGTATAATCCTCTT+TGG - chr1_3:60203004-60203023 Msa0130140:CDS 45.0%
TTCACATTCCGCGAGAAAAG+AGG + chr1_3:60203205-60203224 None:intergenic 45.0%
! ATCTTCTTGCTGTGTGCAAG+AGG - chr1_3:60203518-60203537 Msa0130140:CDS 45.0%
! TCTTCTTGCTGTGTGCAAGA+GGG - chr1_3:60203519-60203538 Msa0130140:CDS 45.0%
!! TTGGCTTTGGGTTATCGGTT+GGG + chr1_3:60203621-60203640 None:intergenic 45.0%
!! ATTGGCTTTGGGTTATCGGT+TGG + chr1_3:60203622-60203641 None:intergenic 45.0%
! CGCCGCCTTTTGTAAATTTG+AGG + chr1_3:60203646-60203665 None:intergenic 45.0%
TTCATTCCACCCTAACAGTC+AGG - chr1_3:60203705-60203724 Msa0130140:intron 45.0%
AGCATGGATCCTGACTGTTA+GGG + chr1_3:60203717-60203736 None:intergenic 45.0%
ATGTTTCTTCGGAGCAGGTT+TGG + chr1_3:60203800-60203819 None:intergenic 45.0%
! ACATTTTCTGTCTGCACTGG+TGG - chr1_3:60203816-60203835 Msa0130140:intron 45.0%
ATGTACTTTGCAACACTCGG+AGG + chr1_3:60203937-60203956 None:intergenic 45.0%
!! ACAGAAGCTTGGTGTTGAGA+AGG - chr1_3:60203978-60203997 Msa0130140:CDS 45.0%
! TGAGATTTTCAACACGGGAC+TGG + chr1_3:60204053-60204072 None:intergenic 45.0%
GAGATCACTCCCAATTCCTA+AGG + chr1_3:60204114-60204133 None:intergenic 45.0%
TCAGCGCAGCCTAAGAGAAA+CGG + chr1_3:60198507-60198526 None:intergenic 50.0%
! CTTCGTGACCCATTTGGTGA+AGG + chr1_3:60198575-60198594 None:intergenic 50.0%
CTGAAACTGTGAGTGGGGAA+GGG + chr1_3:60198641-60198660 None:intergenic 50.0%
ACTGAAACTGTGAGTGGGGA+AGG + chr1_3:60198642-60198661 None:intergenic 50.0%
AAACCAGGAGCAAGGGAAGT+TGG + chr1_3:60198699-60198718 None:intergenic 50.0%
!! CTTCCCTTGCTCCTGGTTTT+AGG - chr1_3:60198700-60198719 Msa0130140:CDS 50.0%
GTGGGGTGAAACCTAAAACC+AGG + chr1_3:60198714-60198733 None:intergenic 50.0%
GAAATGGGGGAAGGATGAAC+AGG - chr1_3:60199198-60199217 Msa0130140:CDS 50.0%
ATGAACAGGGCCACTCTTCA+AGG - chr1_3:60199212-60199231 Msa0130140:CDS 50.0%
TGAACAGGGCCACTCTTCAA+GGG - chr1_3:60199213-60199232 Msa0130140:CDS 50.0%
!! CAAGGGTACTGGAAAGCTAC+TGG - chr1_3:60199230-60199249 Msa0130140:CDS 50.0%
GTCCAGTGAAGCATGACCTA+AGG - chr1_3:60199261-60199280 Msa0130140:CDS 50.0%
GTCCTTAGGTCATGCTTCAC+TGG + chr1_3:60199266-60199285 None:intergenic 50.0%
AAGCATGACCTAAGGACCGT+GGG - chr1_3:60199269-60199288 Msa0130140:intron 50.0%
CAGAGTCTTCTTCAACCCCA+CGG + chr1_3:60199288-60199307 None:intergenic 50.0%
TTCTCTTACCGTCAGGAGCA+CGG + chr1_3:60199325-60199344 None:intergenic 50.0%
AGGAAGAATTGGAGAGGGAG+AGG - chr1_3:60199378-60199397 Msa0130140:intron 50.0%
GGAAGAATTGGAGAGGGAGA+GGG - chr1_3:60199379-60199398 Msa0130140:intron 50.0%
AATCTCACCTGTGGCTGAGA+GGG + chr1_3:60199416-60199435 None:intergenic 50.0%
AAATCTCACCTGTGGCTGAG+AGG + chr1_3:60199417-60199436 None:intergenic 50.0%
TCTCTGTTGTATGGAGCAGG+AGG - chr1_3:60199685-60199704 Msa0130140:intron 50.0%
TTGGGCCTCCAAATGGACAA+CGG - chr1_3:60199744-60199763 Msa0130140:intron 50.0%
GCATACCGTTGTCCATTTGG+AGG + chr1_3:60199752-60199771 None:intergenic 50.0%
GGTGCATACCGTTGTCCATT+TGG + chr1_3:60199755-60199774 None:intergenic 50.0%
GAAGAGTGGGAAGAAGGATC+AGG - chr1_3:60199785-60199804 Msa0130140:intron 50.0%
GTGGGAAGAAGGATCAGGAA+TGG - chr1_3:60199790-60199809 Msa0130140:intron 50.0%
GAAGGATCAGGAATGGTTCC+TGG - chr1_3:60199797-60199816 Msa0130140:intron 50.0%
AGGATCAGGAATGGTTCCTG+GGG - chr1_3:60199799-60199818 Msa0130140:intron 50.0%
CTCACAGGACCATTACTCAC+AGG + chr1_3:60199830-60199849 None:intergenic 50.0%
TCCATTCAAGACGCAGATGG+CGG + chr1_3:60199868-60199887 None:intergenic 50.0%
CGTTCCATTCAAGACGCAGA+TGG + chr1_3:60199871-60199890 None:intergenic 50.0%
GCGTTCCGGCATAAATGGAA+AGG + chr1_3:60200398-60200417 None:intergenic 50.0%
TTCCATTTATGCCGGAACGC+TGG - chr1_3:60200398-60200417 Msa0130140:intron 50.0%
TTCCAGCGTTCCGGCATAAA+TGG + chr1_3:60200403-60200422 None:intergenic 50.0%
GGAAAGGAGAAAGCGGACAA+GGG + chr1_3:60200426-60200445 None:intergenic 50.0%
TGGAAAGGAGAAAGCGGACA+AGG + chr1_3:60200427-60200446 None:intergenic 50.0%
GCGTTCCGGCATAAATGGAA+AGG + chr1_3:60200398-60200417 None:intergenic 50.0%
TTCCATTTATGCCGGAACGC+TGG - chr1_3:60200398-60200417 Msa0130140:intron 50.0%
TTCCAGCGTTCCGGCATAAA+TGG + chr1_3:60200403-60200422 None:intergenic 50.0%
TTGTGCGGACAGGAATGAGA+AGG + chr1_3:60200606-60200625 None:intergenic 50.0%
ATGCGAAAGTTTGCCTTCCC+AGG - chr1_3:60200804-60200823 Msa0130140:intron 50.0%
TGCGAAAGTTTGCCTTCCCA+GGG - chr1_3:60200805-60200824 Msa0130140:intron 50.0%
CCAACACACACGATACCACA+TGG + chr1_3:60200900-60200919 None:intergenic 50.0%
CCATGTGGTATCGTGTGTGT+TGG - chr1_3:60200897-60200916 Msa0130140:intron 50.0%
ATGGCTCCTGGCTATTTGCA+AGG - chr1_3:60200990-60201009 Msa0130140:intron 50.0%
TGGCTCCTGGCTATTTGCAA+GGG - chr1_3:60200991-60201010 Msa0130140:intron 50.0%
GTACTCCCTTAATACACGGC+AGG + chr1_3:60201346-60201365 None:intergenic 50.0%
CTCTTACCCCCAACTTCTTC+TGG - chr1_3:60201823-60201842 Msa0130140:intron 50.0%
TCATGGCCAGAAGAAGTTGG+GGG + chr1_3:60201832-60201851 None:intergenic 50.0%
CCATCATGGCCAGAAGAAGT+TGG + chr1_3:60201835-60201854 None:intergenic 50.0%
CCAACTTCTTCTGGCCATGA+TGG - chr1_3:60201832-60201851 Msa0130140:intron 50.0%
TCGAAAGAGGATGCCCATCA+TGG + chr1_3:60201849-60201868 None:intergenic 50.0%
!! GAGGGGTTTTGTAGAAGAGG+TGG + chr1_3:60201900-60201919 None:intergenic 50.0%
TTCCCCATCTCGAGTCAAGA+AGG - chr1_3:60201926-60201945 Msa0130140:intron 50.0%
CCTTGACTTCCTTCAACACG+CGG + chr1_3:60201973-60201992 None:intergenic 50.0%
CGCGTGTTGAAGGAAGTCAA+GGG - chr1_3:60201971-60201990 Msa0130140:intron 50.0%
CAGGGTAGAAGGAGAAAAGG+AGG + chr1_3:60202026-60202045 None:intergenic 50.0%
CCCCGAAATTGGCAAGAAAC+AGG + chr1_3:60202045-60202064 None:intergenic 50.0%
!! GGTAACGGAAGGACTCTTGA+TGG - chr1_3:60202155-60202174 Msa0130140:intron 50.0%
! GAAGGACTCTTGATGGCTAG+TGG - chr1_3:60202162-60202181 Msa0130140:intron 50.0%
! CTCTTGATGGCTAGTGGAAC+AGG - chr1_3:60202168-60202187 Msa0130140:intron 50.0%
GGAGCCAGACTTGGATCATA+TGG + chr1_3:60202514-60202533 None:intergenic 50.0%
TTCAGAGATGGAGCCAGACT+TGG + chr1_3:60202523-60202542 None:intergenic 50.0%
TGACCTCTAATGAGGGTGGT+TGG + chr1_3:60202846-60202865 None:intergenic 50.0%
! GGCAGCTTGTTCACATCAAG+TGG + chr1_3:60203484-60203503 None:intergenic 50.0%
! GGTTATCGGTTGGGGGTAAT+GGG + chr1_3:60203612-60203631 None:intergenic 50.0%
!! TGGCTTTGGGTTATCGGTTG+GGG + chr1_3:60203620-60203639 None:intergenic 50.0%
ATGGATCCTGACTGTTAGGG+TGG + chr1_3:60203714-60203733 None:intergenic 50.0%
GAGCATGGATCCTGACTGTT+AGG + chr1_3:60203718-60203737 None:intergenic 50.0%
GTGGTTATTGTGGACGAGCA+TGG + chr1_3:60203733-60203752 None:intergenic 50.0%
TGTCGCTGCAGTGGTTATTG+TGG + chr1_3:60203743-60203762 None:intergenic 50.0%
AAACCACACCTCAGTTCAGC+CGG - chr1_3:60203876-60203895 Msa0130140:intron 50.0%
! AAAATCTGCCGGCTGAACTG+AGG + chr1_3:60203887-60203906 None:intergenic 50.0%
TTCGCCAGGTCAAAATCTGC+CGG + chr1_3:60203898-60203917 None:intergenic 50.0%
CACACGATTCAAGATTCGCC+AGG + chr1_3:60203912-60203931 None:intergenic 50.0%
CAGAGTGAGACACAGAAGCT+TGG - chr1_3:60203967-60203986 Msa0130140:CDS 50.0%
! GAAGGAAAAAGGGGTGGTGG+TGG + chr1_3:60198557-60198576 None:intergenic 55.0%
GGTGAAGGAAAAAGGGGTGG+TGG + chr1_3:60198560-60198579 None:intergenic 55.0%
GAGGCTCTTCGTGACCCATT+TGG + chr1_3:60198581-60198600 None:intergenic 55.0%
GGGGGTGGAGGAAGTAAAAG+AGG + chr1_3:60198600-60198619 None:intergenic 55.0%
TTGGTTGTGGTGGCAGATGG+GGG + chr1_3:60198618-60198637 None:intergenic 55.0%
GTTGGTTGTGGTGGCAGATG+GGG + chr1_3:60198619-60198638 None:intergenic 55.0%
! GGTTGGTTGTGGTGGCAGAT+GGG + chr1_3:60198620-60198639 None:intergenic 55.0%
AACTGTGAGTGGGGAAGGGT+TGG + chr1_3:60198637-60198656 None:intergenic 55.0%
GAAGCAGAAGCAGAAGGCGA+TGG + chr1_3:60198666-60198685 None:intergenic 55.0%
GCCTTCTGCTTCTGCTTCTG+CGG - chr1_3:60198668-60198687 Msa0130140:CDS 55.0%
!! AGGAGCAAGGGAAGTTGGTG+GGG + chr1_3:60198694-60198713 None:intergenic 55.0%
! CAGGAGCAAGGGAAGTTGGT+GGG + chr1_3:60198695-60198714 None:intergenic 55.0%
AAGGCTGAAGACCAGAGACC+AGG - chr1_3:60199139-60199158 Msa0130140:CDS 55.0%
TGAAGACCAGAGACCAGGAG+TGG - chr1_3:60199144-60199163 Msa0130140:CDS 55.0%
GAAGCATGACCTAAGGACCG+TGG - chr1_3:60199268-60199287 Msa0130140:intron 55.0%
AGCATGACCTAAGGACCGTG+GGG - chr1_3:60199270-60199289 Msa0130140:intron 55.0%
TCTTCAACCCCACGGTCCTT+AGG + chr1_3:60199280-60199299 None:intergenic 55.0%
CGTGGGGTTGAAGAAGACTC+TGG - chr1_3:60199286-60199305 Msa0130140:intron 55.0%
AATTGGAGAGGGAGAGGGCT+GGG - chr1_3:60199384-60199403 Msa0130140:intron 55.0%
ACCGCCATCTGCGTCTTGAA+TGG - chr1_3:60199864-60199883 Msa0130140:intron 55.0%
CTGCGTCTTGAATGGAACGG+TGG - chr1_3:60199872-60199891 Msa0130140:intron 55.0%
! CTAGAATCACTGAGGGCACG+TGG - chr1_3:60200837-60200856 Msa0130140:intron 55.0%
! GCTCGGAGCACCTTGTAGTT+GGG - chr1_3:60200930-60200949 Msa0130140:intron 55.0%
! CTCGGAGCACCTTGTAGTTG+GGG - chr1_3:60200931-60200950 Msa0130140:intron 55.0%
! AACGGTTGGCCCCAACTACA+AGG + chr1_3:60200943-60200962 None:intergenic 55.0%
AACACGCGGCTAGAGAGAGA+AGG + chr1_3:60201959-60201978 None:intergenic 55.0%
TCTCTCTAGCCGCGTGTTGA+AGG - chr1_3:60201961-60201980 Msa0130140:intron 55.0%
CCGCGTGTTGAAGGAAGTCA+AGG - chr1_3:60201970-60201989 Msa0130140:intron 55.0%
GGAGAAAAGGAGGTGAGCTG+TGG + chr1_3:60202016-60202035 None:intergenic 55.0%
TAGGGAAACCCCAAACCCCT+AGG - chr1_3:60202299-60202318 Msa0130140:intron 55.0%
TCCCAGACACAACTCCCATG+CGG + chr1_3:60202762-60202781 None:intergenic 55.0%
! GGGTTATCGGTTGGGGGTAA+TGG + chr1_3:60203613-60203632 None:intergenic 55.0%
!! GGCTTTGGGTTATCGGTTGG+GGG + chr1_3:60203619-60203638 None:intergenic 55.0%
TGACAGCAGCAGCAGTTGTC+GGG + chr1_3:60203771-60203790 None:intergenic 55.0%
GTGACAGCAGCAGCAGTTGT+CGG + chr1_3:60203772-60203791 None:intergenic 55.0%
!! TCAGCCGGCAGATTTTGACC+TGG - chr1_3:60203891-60203910 Msa0130140:intron 55.0%
!! GGTGGTGGCGGTGGTAAAGA+TGG + chr1_3:60198542-60198561 None:intergenic 60.0%
!! GGAAAAAGGGGTGGTGGTGG+CGG + chr1_3:60198554-60198573 None:intergenic 60.0%
!! GGGTTGGTTGTGGTGGCAGA+TGG + chr1_3:60198621-60198640 None:intergenic 60.0%
!! TGGGGAAGGGTTGGTTGTGG+TGG + chr1_3:60198628-60198647 None:intergenic 60.0%
!! GAGTGGGGAAGGGTTGGTTG+TGG + chr1_3:60198631-60198650 None:intergenic 60.0%
GCCGCAGAAGCAGAAGCAGA+AGG + chr1_3:60198672-60198691 None:intergenic 60.0%
CCAGGAGCAAGGGAAGTTGG+TGG + chr1_3:60198696-60198715 None:intergenic 60.0%
CCACCAACTTCCCTTGCTCC+TGG - chr1_3:60198693-60198712 Msa0130140:CDS 60.0%
! GGGCCACTCTTCAAGGGTAC+TGG - chr1_3:60199219-60199238 Msa0130140:CDS 60.0%
GAATTGGAGAGGGAGAGGGC+TGG - chr1_3:60199383-60199402 Msa0130140:intron 60.0%
ATTGGAGAGGGAGAGGGCTG+GGG - chr1_3:60199385-60199404 Msa0130140:intron 60.0%
TTACTCACAGGCTCAGCCCC+AGG + chr1_3:60199818-60199837 None:intergenic 60.0%
GGGGCTGAGCCTGTGAGTAA+TGG - chr1_3:60199818-60199837 Msa0130140:intron 60.0%
! AGACGCAGATGGCGGTCAAC+AGG + chr1_3:60199860-60199879 None:intergenic 60.0%
GGACAAGGGTTCCAGCGTTC+CGG + chr1_3:60200412-60200431 None:intergenic 60.0%
GGACAAGGGTTCCAGCGTTC+CGG + chr1_3:60200412-60200431 None:intergenic 60.0%
! GGCTCGGAGCACCTTGTAGT+TGG - chr1_3:60200929-60200948 Msa0130140:intron 60.0%
GTTGGGGCCAACCGTTTCAC+AGG - chr1_3:60200947-60200966 Msa0130140:intron 60.0%
ACCCGCATGGGAGTTGTGTC+TGG - chr1_3:60202757-60202776 Msa0130140:intron 60.0%
CCCAGACACAACTCCCATGC+GGG + chr1_3:60202761-60202780 None:intergenic 60.0%
CCCGCATGGGAGTTGTGTCT+GGG - chr1_3:60202758-60202777 Msa0130140:intron 60.0%
!! AAAAGGGGTGGTGGTGGCGG+TGG + chr1_3:60198551-60198570 None:intergenic 65.0%
GTTGTGGTGGCAGATGGGGG+TGG + chr1_3:60198615-60198634 None:intergenic 65.0%
CATAGCGGCCGTGCTCCTGA+CGG - chr1_3:60199314-60199333 Msa0130140:intron 65.0%
CGGGAGAGTTGTCGCTGCAG+TGG + chr1_3:60203752-60203771 None:intergenic 65.0%
! CTGCCGGCTGAACTGAGGTG+TGG + chr1_3:60203882-60203901 None:intergenic 65.0%
GTGGTGGCAGATGGGGGTGG+AGG + chr1_3:60198612-60198631 None:intergenic 70.0%
GGCTGGACCCTCTCAGCCAC+AGG - chr1_3:60199406-60199425 Msa0130140:intron 70.0%
GAGAGGGAGAGGGCTGGGGC+TGG - chr1_3:60199389-60199408 Msa0130140:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 60198419 60204324 60198419 ID=Msa0130140;Name=Msa0130140
chr1_3 mRNA 60198419 60204324 60198419 ID=Msa0130140-mRNA-1;Parent=Msa0130140;Name=Msa0130140-mRNA-1;_AED=0.05;_eAED=0.05;_QI=163|1|1|1|1|1|4|208|482
chr1_3 exon 60198419 60199286 60198419 ID=Msa0130140-mRNA-1:exon:19840;Parent=Msa0130140-mRNA-1
chr1_3 exon 60202812 60203039 60202812 ID=Msa0130140-mRNA-1:exon:19839;Parent=Msa0130140-mRNA-1
chr1_3 exon 60203316 60203611 60203316 ID=Msa0130140-mRNA-1:exon:19838;Parent=Msa0130140-mRNA-1
chr1_3 exon 60203897 60204324 60203897 ID=Msa0130140-mRNA-1:exon:19837;Parent=Msa0130140-mRNA-1
chr1_3 five_prime_UTR 60204162 60204324 60204162 ID=Msa0130140-mRNA-1:five_prime_utr;Parent=Msa0130140-mRNA-1
chr1_3 CDS 60203897 60204161 60203897 ID=Msa0130140-mRNA-1:cds;Parent=Msa0130140-mRNA-1
chr1_3 CDS 60203316 60203611 60203316 ID=Msa0130140-mRNA-1:cds;Parent=Msa0130140-mRNA-1
chr1_3 CDS 60202812 60203039 60202812 ID=Msa0130140-mRNA-1:cds;Parent=Msa0130140-mRNA-1
chr1_3 CDS 60198627 60199286 60198627 ID=Msa0130140-mRNA-1:cds;Parent=Msa0130140-mRNA-1
chr1_3 three_prime_UTR 60198419 60198626 60198419 ID=Msa0130140-mRNA-1:three_prime_utr;Parent=Msa0130140-mRNA-1
Gene Sequence

>Msa0130140

ATGGGTCACGAAGAGCCTCTTTTACTTCCTCCACCCCCATCTGCCACCACAACCAACCCTTCCCCACTCACAGTTTCAGTACCATCGCCTTCTGCTTCTGCTTCTGCGGCCCCACCAACTTCCCTTGCTCCTGGTTTTAGGTTTCACCCCACTGATGAAGAACTTGTCATTTATTACCTGAAACGCAAGGTTTCTGGAAAACCCTTCAGATTTGATGCTATTGCTGAAGTTGATATCTACAAGAGTGAACCATGGGATCTTTTTGATAAGTCAAGGCTGAAGACCAGAGACCAGGAGTGGTATTTTTTCAGTGCATTGGACAAGAAGTATGGAAATGGGGGAAGGATGAACAGGGCCACTCTTCAAGGGTACTGGAAAGCTACTGGAAATGATCGTCCAGTGAAGCATGACCTAAGGACCGTGGGGTTGAAGAAGACTCTGGTGTTTCATAGCGGCCGTGCTCCTGACGGTAAGAGAACAAATTGGGTCATGCATGAGTACAGACTTGTTGAGGAAGAATTGGAGAGGGAGAGGGCTGGGGCTGGACCCTCTCAGCCACAGGAGGCATTTGTGCTGTGTAGAGTGTTTCACAAGAATAACATTGGGCCTCCAAATGGACAACGGTATGCACCTTTTGTTGAAGAAGAGTGGGAAGAAGGATCAGGAATGGTTCCTGGGGCTGAGCCTGTGAGTAATGGTCCTGTGAGTAATGGTCCTGTTGACCGCCATCTGCGTCTTGAATGGAACGGTGGAGTTTCATGCAATGAAGGAAGAAATCATGTTGTGCAGGACACTCAATCCAACAACAAAACTCCACTTGATGTGAACAAGCTGCCGATCGAAACTCAAAATCTTCTTGCTGTGTGCAAGAGGGAGAGCATGACTGAGTTTTCATCACCTGAAAAGGATGAATCTAAGCATATGCATGTTGATGATGAGTACCCATTACCCCCAACCGATAACCCAAAGCCAATACCTCAAATTTACAAAAGGCGGCGCTATAACTTGAACTCCAATCATTCTAATGTTTCTGGAGATTCATTCCACCCTAACAGTCAGGATCCATGCTCGTCCACAATAACCACTGCAGCGACAACTCTCCCGACAACTGCTGCTGCTGTCACAACTGCCAAACCTGCTCCGAAGAAACATTTTCTGTCTGCACTGGTGGAGTTTTCCCTGCTAGAATCACTTGAATCGAAGAAGGAAAACCACACCTCAGTTCAGCCGGCAGATTTTGACCTGGCGAATCTTGAATCGTGTGTGCCTCCGAGTGTTGCAAAGTACATCAAATACTTGCAGAGTGAGACACAGAAGCTTGGTGTTGAGAAGGAGACAATGCGTTTCGAGTTGACAAGTGCTCAAACCATGATTAACATTCTCCAGTCCCGTGTTGAAAATCTCAGCAAAGAGAACGAGGAGATGAAGATGATGATGAGAAATCCTTAG
Protein sequence

>Msa0130140

MGHEEPLLLPPPPSATTTNPSPLTVSVPSPSASASAAPPTSLAPGFRFHPTDEELVIYYLKRKVSGKPFRFDAIAEVDIYKSEPWDLFDKSRLKTRDQEWYFFSALDKKYGNGGRMNRATLQGYWKATGNDRPVKHDLRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVEEELERERAGAGPSQPQEAFVLCRVFHKNNIGPPNGQRYAPFVEEEWEEGSGMVPGAEPVSNGPVSNGPVDRHLRLEWNGGVSCNEGRNHVVQDTQSNNKTPLDVNKLPIETQNLLAVCKRESMTEFSSPEKDESKHMHVDDEYPLPPTDNPKPIPQIYKRRRYNLNSNHSNVSGDSFHPNSQDPCSSTITTAATTLPTTAAAVTTAKPAPKKHFLSALVEFSLLESLESKKENHTSVQPADFDLANLESCVPPSVAKYIKYLQSETQKLGVEKETMRFELTSAQTMINILQSRVENLSKENEEMKMMMRNP*