Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0981950 | XP_003593218.2 | 95.729 | 796 | 32 | 1 | 7 | 800 | 11 | 806 | 0.0 | 1441 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0981950 | sp|Q9LME6|MBD8_ARATH | 45.752 | 153 | 61 | 3 | 133 | 263 | 238 | 390 | 4.98e-33 | 137 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0981950 | G7IPJ6 | 95.729 | 796 | 32 | 1 | 7 | 800 | 11 | 806 | 0.0 | 1441 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0981950 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000190 | Msa0981950 | 0.807348 | 5.281081e-50 | -8.615850e-47 |
| Msa0008110 | Msa0981950 | 0.858737 | 6.709009e-63 | -8.615850e-47 |
| Msa0017510 | Msa0981950 | 0.826453 | 2.690288e-54 | -8.615850e-47 |
| Msa0036830 | Msa0981950 | 0.800258 | 1.568150e-48 | -8.615850e-47 |
| Msa0046810 | Msa0981950 | 0.807256 | 5.522905e-50 | -8.615850e-47 |
| Msa0057420 | Msa0981950 | 0.859204 | 4.862452e-63 | -8.615850e-47 |
| Msa0074350 | Msa0981950 | 0.802294 | 6.005960e-49 | -8.615850e-47 |
| Msa0074510 | Msa0981950 | 0.801396 | 9.183091e-49 | -8.615850e-47 |
| Msa0081050 | Msa0981950 | 0.803728 | 3.034885e-49 | -8.615850e-47 |
| Msa0090400 | Msa0981950 | 0.802692 | 4.972217e-49 | -8.615850e-47 |
| Msa0623220 | Msa0981950 | 0.802600 | 5.194183e-49 | -8.615850e-47 |
| Msa0658240 | Msa0981950 | 0.811118 | 8.214724e-51 | -8.615850e-47 |
| Msa0660330 | Msa0981950 | 0.839919 | 1.187690e-57 | -8.615850e-47 |
| Msa0689520 | Msa0981950 | 0.867928 | 9.528091e-66 | -8.615850e-47 |
| Msa0713000 | Msa0981950 | 0.816726 | 4.765667e-52 | -8.615850e-47 |
| Msa0749740 | Msa0981950 | 0.817733 | 2.829932e-52 | -8.615850e-47 |
| Msa0749770 | Msa0981950 | 0.804900 | 1.730013e-49 | -8.615850e-47 |
| Msa0750090 | Msa0981950 | 0.814302 | 1.651133e-51 | -8.615850e-47 |
| Msa0148940 | Msa0981950 | 0.808258 | 3.384071e-50 | -8.615850e-47 |
| Msa0149370 | Msa0981950 | 0.846583 | 1.983226e-59 | -8.615850e-47 |
| Msa0157290 | Msa0981950 | 0.827096 | 1.889431e-54 | -8.615850e-47 |
| Msa0167010 | Msa0981950 | 0.807151 | 5.813407e-50 | -8.615850e-47 |
| Msa0193990 | Msa0981950 | 0.803552 | 3.300683e-49 | -8.615850e-47 |
| Msa0225320 | Msa0981950 | 0.809390 | 1.937573e-50 | -8.615850e-47 |
| Msa0225460 | Msa0981950 | 0.815700 | 8.083025e-52 | -8.615850e-47 |
| Msa0225680 | Msa0981950 | 0.823742 | 1.176128e-53 | -8.615850e-47 |
| Msa0232690 | Msa0981950 | 0.803173 | 3.954818e-49 | -8.615850e-47 |
| Msa0379770 | Msa0981950 | 0.823082 | 1.677705e-53 | -8.615850e-47 |
| Msa0382190 | Msa0981950 | 0.807957 | 3.921816e-50 | -8.615850e-47 |
| Msa0417880 | Msa0981950 | 0.815898 | 7.302720e-52 | -8.615850e-47 |
| Msa0419700 | Msa0981950 | 0.817059 | 4.013191e-52 | -8.615850e-47 |
| Msa0424790 | Msa0981950 | 0.802959 | 4.379359e-49 | -8.615850e-47 |
| Msa0428150 | Msa0981950 | 0.831953 | 1.245944e-55 | -8.615850e-47 |
| Msa0428590 | Msa0981950 | 0.800048 | 1.729967e-48 | -8.615850e-47 |
| Msa0442830 | Msa0981950 | 0.865470 | 5.770377e-65 | -8.615850e-47 |
| Msa0462500 | Msa0981950 | 0.839399 | 1.621838e-57 | -8.615850e-47 |
| Msa0981950 | Msa1018690 | 0.817158 | 3.812504e-52 | -8.615850e-47 |
| Msa0981950 | Msa1020560 | 0.804947 | 1.691631e-49 | -8.615850e-47 |
| Msa0981950 | Msa1020670 | 0.814018 | 1.907849e-51 | -8.615850e-47 |
| Msa0981950 | Msa1096960 | 0.800005 | 1.765712e-48 | -8.615850e-47 |
| Msa0981950 | Msa1097980 | 0.803283 | 3.753582e-49 | -8.615850e-47 |
| Msa0981950 | Msa1140210 | 0.802573 | 5.262924e-49 | -8.615850e-47 |
| Msa0981950 | Msa1154690 | 0.805374 | 1.377023e-49 | -8.615850e-47 |
| Msa0981950 | Msa1223470 | 0.851060 | 1.134509e-60 | -8.615850e-47 |
| Msa0981950 | Msa1268670 | 0.810462 | 1.139091e-50 | -8.615850e-47 |
| Msa0981950 | Msa1269480 | 0.814542 | 1.460801e-51 | -8.615850e-47 |
| Msa0981950 | Msa1279380 | 0.815890 | 7.331030e-52 | -8.615850e-47 |
| Msa0981950 | Msa1283860 | 0.805354 | 1.389933e-49 | -8.615850e-47 |
| Msa0981950 | Msa1306690 | 0.840654 | 7.636216e-58 | -8.615850e-47 |
| Msa0981950 | Msa1365060 | 0.815391 | 9.468017e-52 | -8.615850e-47 |
| Msa0981950 | Msa1367370 | 0.826517 | 2.597932e-54 | -8.615850e-47 |
| Msa0981950 | Msa1369550 | 0.874416 | 6.871887e-68 | -8.615850e-47 |
| Msa0981950 | Msa1373650 | 0.991952 | 1.840397e-190 | -8.615850e-47 |
| Msa0981950 | Msa1399550 | 0.814479 | 1.508422e-51 | -8.615850e-47 |
| Msa0981950 | Msa1422420 | 0.817721 | 2.846646e-52 | -8.615850e-47 |
| Msa0981950 | Msa1443110 | 0.828610 | 8.169832e-55 | -8.615850e-47 |
| Msa0981950 | Msa1459690 | 0.803112 | 4.072879e-49 | -8.615850e-47 |
| Msa0261340 | Msa0981950 | 0.803087 | 4.120488e-49 | -8.615850e-47 |
| Msa0264040 | Msa0981950 | 0.807865 | 4.102448e-50 | -8.615850e-47 |
| Msa0267110 | Msa0981950 | 0.802064 | 6.698892e-49 | -8.615850e-47 |
| Msa0288890 | Msa0981950 | 0.855428 | 6.350325e-62 | -8.615850e-47 |
| Msa0302000 | Msa0981950 | 0.822225 | 2.653920e-53 | -8.615850e-47 |
| Msa0314340 | Msa0981950 | 0.860413 | 2.101638e-63 | -8.615850e-47 |
| Msa0339320 | Msa0981950 | 0.812058 | 5.132739e-51 | -8.615850e-47 |
| Msa0345000 | Msa0981950 | 0.807767 | 4.304539e-50 | -8.615850e-47 |
| Msa0507680 | Msa0981950 | 0.807243 | 5.560361e-50 | -8.615850e-47 |
| Msa0511750 | Msa0981950 | 0.819132 | 1.363662e-52 | -8.615850e-47 |
| Msa0520890 | Msa0981950 | 0.848051 | 7.838502e-60 | -8.615850e-47 |
| Msa0524190 | Msa0981950 | 0.826590 | 2.495792e-54 | -8.615850e-47 |
| Msa0538470 | Msa0981950 | 0.804015 | 2.646005e-49 | -8.615850e-47 |
| Msa0572500 | Msa0981950 | 0.807541 | 4.807133e-50 | -8.615850e-47 |
| Msa0572520 | Msa0981950 | 0.810547 | 1.091722e-50 | -8.615850e-47 |
| Msa0880140 | Msa0981950 | 0.822748 | 2.006514e-53 | -8.615850e-47 |
| Msa0880680 | Msa0981950 | 0.806326 | 8.686466e-50 | -8.615850e-47 |
| Msa0938480 | Msa0981950 | 0.806906 | 6.550574e-50 | -8.615850e-47 |
| Msa0945110 | Msa0981950 | 0.806049 | 9.935442e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0981950 | MtrunA17_Chr2g0279291 | 95.729 | 796 | 32 | 1 | 7 | 800 | 11 | 806 | 0.0 | 1441 |
| Msa0981950 | MtrunA17_Chr3g0115871 | 35.216 | 301 | 146 | 10 | 14 | 271 | 23 | 317 | 1.61e-29 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0981950 | AT1G22310.1 | 45.752 | 153 | 61 | 3 | 133 | 263 | 139 | 291 | 1.08e-34 | 138 |
| Msa0981950 | AT1G22310.2 | 45.752 | 153 | 61 | 3 | 133 | 263 | 238 | 390 | 5.06e-34 | 137 |
Find 223 sgRNAs with CRISPR-Local
Find 356 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGAGGGGTTTGATCATTC+TGG | 0.186677 | 6_4:-21546785 | Msa0981950:CDS |
| AATAAGAGTGACTTGAAAAT+TGG | 0.224444 | 6_4:-21546626 | Msa0981950:CDS |
| ACAAGAAGTTATGTTAAATA+TGG | 0.243118 | 6_4:-21545593 | Msa0981950:CDS |
| TCCATTCGGTGAACAGAAAA+TGG | 0.251866 | 6_4:-21547026 | Msa0981950:CDS |
| ATTGTTGATGCTTCTGATTT+TGG | 0.254403 | 6_4:-21548795 | Msa0981950:CDS |
| AAGGAGGAAGAGGAGTTGTT+AGG | 0.257264 | 6_4:-21548870 | Msa0981950:CDS |
| GATTGATTTGGCGGCGTTAT+CGG | 0.268030 | 6_4:-21548943 | Msa0981950:CDS |
| GAGAAGGACGGAGGGGTTAA+AGG | 0.270308 | 6_4:-21548889 | Msa0981950:CDS |
| AGGAGGAAGAGGAGTTGTTA+GGG | 0.296961 | 6_4:-21548869 | Msa0981950:CDS |
| AAAGAATCCAAAGATTGTTC+TGG | 0.310627 | 6_4:+21546494 | None:intergenic |
| AGAAGAGAAAATCCAGCTTT+TGG | 0.314324 | 6_4:-21544927 | Msa0981950:three_prime_UTR |
| ATTCAAGGAAATTGCCTTGC+TGG | 0.314369 | 6_4:-21547536 | Msa0981950:CDS |
| TTTATTGCCGCAGATATATA+AGG | 0.318369 | 6_4:-21548707 | Msa0981950:intron |
| AGTCCCTTGCTTCATTCATC+TGG | 0.322751 | 6_4:-21546737 | Msa0981950:CDS |
| GGTATCCCCAGAACAATCTT+TGG | 0.329312 | 6_4:-21546501 | Msa0981950:CDS |
| CCTTTACCTTCAGAAGTATC+AGG | 0.329892 | 6_4:+21546824 | None:intergenic |
| AGAAAATGTGGTCCAATCTA+AGG | 0.338186 | 6_4:-21546537 | Msa0981950:CDS |
| TTGAGGGGTTTGATCATTCT+GGG | 0.341962 | 6_4:-21546784 | Msa0981950:CDS |
| TCCTCATTGACAGGGGTTCC+AGG | 0.343875 | 6_4:-21545749 | Msa0981950:intron |
| TTGATATTCTCCAGTCCTAA+TGG | 0.345479 | 6_4:-21547793 | Msa0981950:intron |
| ACCAGACACATTTGAGTTAG+TGG | 0.353621 | 6_4:+21547579 | None:intergenic |
| GCTTCGGAATCCTTCAATTC+CGG | 0.357751 | 6_4:-21549084 | Msa0981950:CDS |
| GGAAATTGCCTTGCTGGAAA+TGG | 0.362080 | 6_4:-21547530 | Msa0981950:CDS |
| TTCTGTTGCCCGCGAGGAGC+AGG | 0.367007 | 6_4:-21547620 | Msa0981950:CDS |
| TTCTGGTTGCACTAATACTA+AGG | 0.367939 | 6_4:-21546678 | Msa0981950:CDS |
| GAGGAGAGCTGAAGATTTGC+CGG | 0.368944 | 6_4:-21547251 | Msa0981950:CDS |
| TCAGTAGTCACTCTCTGTTC+CGG | 0.374463 | 6_4:+21547667 | None:intergenic |
| TTTGGTGATGTGTTGCCTTT+GGG | 0.376749 | 6_4:-21548777 | Msa0981950:CDS |
| CGATTTCGCTTGTAGATTTG+AGG | 0.379924 | 6_4:+21549297 | None:intergenic |
| TCCTTCACCTCCGGAATTGA+AGG | 0.383220 | 6_4:+21549074 | None:intergenic |
| GAGTGATTTGGTTGGGCAGT+GGG | 0.390198 | 6_4:-21548841 | Msa0981950:CDS |
| GCCGGGTCAGCCTAATGTCC+TGG | 0.392917 | 6_4:-21547233 | Msa0981950:CDS |
| TGAGTGATTTGGTTGGGCAG+TGG | 0.396024 | 6_4:-21548842 | Msa0981950:CDS |
| GGGGAAGTAGGAGGAGGAAG+AGG | 0.404028 | 6_4:-21548821 | Msa0981950:CDS |
| TATCTTCTAACCTCAATTCC+TGG | 0.404525 | 6_4:+21545731 | None:intergenic |
| GTTGATAGAGTGCTCAATTA+TGG | 0.408438 | 6_4:-21544903 | Msa0981950:three_prime_UTR |
| ACCGAAAGTGAAAACGCATT+TGG | 0.408495 | 6_4:-21548997 | Msa0981950:CDS |
| CGTCTCTAATGAACGATTCA+AGG | 0.411445 | 6_4:-21547551 | Msa0981950:CDS |
| TCTTGATGTGTCAACTGAAT+TGG | 0.411782 | 6_4:-21545668 | Msa0981950:CDS |
| TGTTGTAATTGTCTTAGTCT+TGG | 0.412694 | 6_4:-21544740 | Msa0981950:three_prime_UTR |
| CTCGCTATCTCCGCCGCAAA+CGG | 0.418387 | 6_4:+21548909 | None:intergenic |
| TCCAAGAAGAGTGAAAATTC+TGG | 0.419209 | 6_4:-21546695 | Msa0981950:CDS |
| GACAGAAACTGCTGTCCATT+AGG | 0.421132 | 6_4:+21547778 | None:intergenic |
| TTGGGCAGTGGGGAAGTAGG+AGG | 0.422115 | 6_4:-21548830 | Msa0981950:CDS |
| AGCTTCTTCTTAGTTTGAAA+AGG | 0.426234 | 6_4:-21548749 | Msa0981950:CDS |
| GTCTAAAGATGGCCAGCATT+TGG | 0.427912 | 6_4:+21545412 | None:intergenic |
| GATGGAGTTATAATTAAAGA+TGG | 0.429529 | 6_4:-21547361 | Msa0981950:CDS |
| CTTCTCTGATGAACTGTTTG+AGG | 0.429943 | 6_4:+21549129 | None:intergenic |
| TGCTCAAAACTCTATTATAG+AGG | 0.430329 | 6_4:-21547140 | Msa0981950:CDS |
| CGGGCAACAGAAGCAGCAGC+AGG | 0.430626 | 6_4:+21547631 | None:intergenic |
| GCGACATCGGCGGTGAGGTC+GGG | 0.431390 | 6_4:+21549214 | None:intergenic |
| GTCATGTTGGGATTCATGTT+AGG | 0.439001 | 6_4:-21547282 | Msa0981950:CDS |
| CCAACCGCAATTTCTGAAAC+AGG | 0.442236 | 6_4:+21547079 | None:intergenic |
| AAACGGTGTTGTGATTGATT+TGG | 0.447212 | 6_4:-21548955 | Msa0981950:CDS |
| TCCATCTTCGTGATCCTTGA+AGG | 0.449923 | 6_4:+21547178 | None:intergenic |
| CCGAGTTGTTGATGCAAAGA+TGG | 0.451107 | 6_4:-21546903 | Msa0981950:CDS |
| CGCGACATCGGCGGTGAGGT+CGG | 0.451720 | 6_4:+21549213 | None:intergenic |
| TGGTTGGGCAGTGGGGAAGT+AGG | 0.452036 | 6_4:-21548833 | Msa0981950:CDS |
| GCCACTAACTCAAATGTGTC+TGG | 0.452185 | 6_4:-21547580 | Msa0981950:CDS |
| AAGAATCCAAAGATTGTTCT+GGG | 0.453262 | 6_4:+21546495 | None:intergenic |
| TCCTCTATTGTTCCATCCAT+CGG | 0.454254 | 6_4:+21546941 | None:intergenic |
| GAATTTCCATTGGCATTGCC+TGG | 0.455401 | 6_4:-21549053 | Msa0981950:CDS |
| AAGGAGTGAAAATGTACTTC+CGG | 0.455412 | 6_4:-21547686 | Msa0981950:CDS |
| TCTTCTGCTCCCAGGACATT+AGG | 0.455500 | 6_4:+21547223 | None:intergenic |
| CATTACACACTAGTTGTGTA+TGG | 0.456408 | 6_4:+21544699 | None:intergenic |
| CTCTTCCTCACTTCACCACC+AGG | 0.456452 | 6_4:+21549035 | None:intergenic |
| CTTGGTTCATCCGTTTCAGA+TGG | 0.457726 | 6_4:-21547379 | Msa0981950:CDS |
| GGAGGGGTTAAAGGAGGAAG+AGG | 0.459659 | 6_4:-21548880 | Msa0981950:CDS |
| TCAACCTTCAACCACAGCGC+TGG | 0.460783 | 6_4:-21549254 | Msa0981950:CDS |
| GGACCCAGCGCTGTGGTTGA+AGG | 0.460801 | 6_4:+21549250 | None:intergenic |
| AAAACACTTTATGACAGAAC+TGG | 0.462546 | 6_4:+21547326 | None:intergenic |
| GCGGTGGTCGGAGGGGAGAG+TGG | 0.463550 | 6_4:+21549166 | None:intergenic |
| GACAGGGGTTCCAGGAATTG+AGG | 0.466880 | 6_4:-21545741 | Msa0981950:intron |
| CTTAGTTTGAAAAGGAAAGA+TGG | 0.472588 | 6_4:-21548741 | Msa0981950:CDS |
| CGGTGTTGTGATTGATTTGG+CGG | 0.473620 | 6_4:-21548952 | Msa0981950:CDS |
| AATTATAACTCCATCTGAAA+CGG | 0.473735 | 6_4:+21547369 | None:intergenic |
| GAAATACAATCAGATTCCGT+TGG | 0.478566 | 6_4:-21545499 | Msa0981950:CDS |
| CTCTGGTCAAATCAATGTGT+TGG | 0.479845 | 6_4:-21545446 | Msa0981950:CDS |
| TTTGGCGGCGTTATCGGAGG+TGG | 0.480395 | 6_4:-21548937 | Msa0981950:CDS |
| CTTACGAATAAACAGGATTG+TGG | 0.480599 | 6_4:+21544809 | None:intergenic |
| GAAGTGAGGAAGAGGAAGAG+AGG | 0.480995 | 6_4:-21549026 | Msa0981950:CDS |
| CCCAGGACATTAGGCTGACC+CGG | 0.482805 | 6_4:+21547232 | None:intergenic |
| TGTAATTGTCTTAGTCTTGG+AGG | 0.484027 | 6_4:-21544737 | Msa0981950:three_prime_UTR |
| GAAGGTGTCTCATCCGTGAC+TGG | 0.485030 | 6_4:+21547196 | None:intergenic |
| AAGTGAGGAAGAGGAAGAGA+GGG | 0.486983 | 6_4:-21549025 | Msa0981950:CDS |
| AGGGGTTAGAAACCTTAGAT+TGG | 0.489305 | 6_4:+21546525 | None:intergenic |
| CGTCGCTACAATAGTCATGT+TGG | 0.489692 | 6_4:-21547295 | Msa0981950:CDS |
| GAAGTAGGAGGAGGAAGAGG+AGG | 0.489968 | 6_4:-21548818 | Msa0981950:CDS |
| AAAGGAAAGATGGTCGTGCT+TGG | 0.491157 | 6_4:-21548731 | Msa0981950:CDS |
| ACAATACTACATGATCATAT+CGG | 0.491248 | 6_4:+21544782 | None:intergenic |
| TAGTCTTGGAGGCCGTTCAA+TGG | 0.491740 | 6_4:-21544726 | Msa0981950:three_prime_UTR |
| TCCTTCAATTCCGGAGGTGA+AGG | 0.492334 | 6_4:-21549075 | Msa0981950:CDS |
| TTACGAATAAACAGGATTGT+GGG | 0.495318 | 6_4:+21544810 | None:intergenic |
| GCGCTGTGGTTGAAGGTTGA+AGG | 0.496508 | 6_4:+21549257 | None:intergenic |
| GTCGCTACAATAGTCATGTT+GGG | 0.498127 | 6_4:-21547294 | Msa0981950:CDS |
| TCGGAGGGGAGAGTGGGAGT+AGG | 0.501172 | 6_4:+21549173 | None:intergenic |
| TCTTCTGATGAATAGACAAC+AGG | 0.501464 | 6_4:+21547419 | None:intergenic |
| GGCAGTGGGGAAGTAGGAGG+AGG | 0.502422 | 6_4:-21548827 | Msa0981950:CDS |
| AGGTCGGGAGTAGGTGCGGT+GGG | 0.502825 | 6_4:+21549229 | None:intergenic |
| AGTTCGACACTGTTGAGCTT+CGG | 0.505502 | 6_4:-21549100 | Msa0981950:CDS |
| TGAGGAAGAGGAAGAGAGGG+AGG | 0.505615 | 6_4:-21549022 | Msa0981950:CDS |
| AGCTCACAACCACATGTGTA+TGG | 0.505650 | 6_4:-21545558 | Msa0981950:CDS |
| ATCGATGATGATGCGGTGGT+CGG | 0.506767 | 6_4:+21549154 | None:intergenic |
| CAACCTTCAACCACAGCGCT+GGG | 0.506937 | 6_4:-21549253 | Msa0981950:CDS |
| TTTCAGAATTAACAGCATCA+TGG | 0.507095 | 6_4:+21545518 | None:intergenic |
| AGTTATGCATTATACCTTGT+CGG | 0.511195 | 6_4:+21546457 | None:intergenic |
| GGAGGTGGAGCATCCGTTTG+CGG | 0.516406 | 6_4:-21548922 | Msa0981950:CDS |
| GATGTGGCGCTGACTGTTGA+GGG | 0.517199 | 6_4:-21546800 | Msa0981950:CDS |
| AACATAGAAGAAGATGAAGA+AGG | 0.517254 | 6_4:-21549426 | Msa0981950:exon |
| AGGAGAGCTGAAGATTTGCC+GGG | 0.517482 | 6_4:-21547250 | Msa0981950:CDS |
| TGCTGCTTCTGTTGCCCGCG+AGG | 0.518233 | 6_4:-21547626 | Msa0981950:CDS |
| AACGATTACCAGTCTAAAGA+TGG | 0.519030 | 6_4:+21545401 | None:intergenic |
| CGGTGGTCGGAGGGGAGAGT+GGG | 0.519469 | 6_4:+21549167 | None:intergenic |
| AGCTCAACAGTGTCGAACTT+CGG | 0.519517 | 6_4:+21549104 | None:intergenic |
| AAAATGGAAAAGAGCTTGAC+TGG | 0.520687 | 6_4:-21547010 | Msa0981950:CDS |
| AGAAGAATCAACGGTTCAGA+TGG | 0.521404 | 6_4:-21549402 | Msa0981950:CDS |
| GTCCCTTGCTTCATTCATCT+GGG | 0.522300 | 6_4:-21546736 | Msa0981950:CDS |
| GGAGGTGAAGGAATTTCCAT+TGG | 0.522903 | 6_4:-21549063 | Msa0981950:CDS |
| TTCATGTTAGGAATTATTTG+AGG | 0.525350 | 6_4:-21547270 | Msa0981950:CDS |
| AATGGAAATTCCTTCACCTC+CGG | 0.525587 | 6_4:+21549065 | None:intergenic |
| AGAGTGGGAGTAGGAAGAAG+TGG | 0.526076 | 6_4:+21549182 | None:intergenic |
| ACCTTCAAGGATCACGAAGA+TGG | 0.528471 | 6_4:-21547179 | Msa0981950:CDS |
| TATTATAGAGGATTCTATCA+TGG | 0.528948 | 6_4:-21547128 | Msa0981950:CDS |
| ACAACGAGGCGGTATCGACT+TGG | 0.529675 | 6_4:-21547397 | Msa0981950:CDS |
| CTTGAATCGTTCATTAGAGA+CGG | 0.533348 | 6_4:+21547552 | None:intergenic |
| CCGGGTCAGCCTAATGTCCT+GGG | 0.533615 | 6_4:-21547232 | Msa0981950:CDS |
| ATCTAAGGTTTCTAACCCCT+CGG | 0.534183 | 6_4:-21546522 | Msa0981950:CDS |
| GACAGTGGATCACCAAATGC+TGG | 0.535223 | 6_4:-21545424 | Msa0981950:CDS |
| CCTGTTTCAGAAATTGCGGT+TGG | 0.535860 | 6_4:-21547079 | Msa0981950:CDS |
| TCTGGTTGCACTAATACTAA+GGG | 0.537167 | 6_4:-21546677 | Msa0981950:CDS |
| TGATGTGGCGCTGACTGTTG+AGG | 0.537401 | 6_4:-21546801 | Msa0981950:CDS |
| ACCGATGGATGGAACAATAG+AGG | 0.540164 | 6_4:-21546942 | Msa0981950:CDS |
| TCGTTGGTCCTGCTCCTCGC+GGG | 0.541414 | 6_4:+21547612 | None:intergenic |
| ATAAATGCTGAGTCTCCATT+CGG | 0.543577 | 6_4:-21547040 | Msa0981950:CDS |
| GCATATTAATAGTGATCTAT+CGG | 0.544643 | 6_4:-21544609 | Msa0981950:three_prime_UTR |
| GAGATAGCGAGAAGGACGGA+GGG | 0.546960 | 6_4:-21548897 | Msa0981950:CDS |
| TCACGGATGAGACACCTTCA+AGG | 0.549275 | 6_4:-21547192 | Msa0981950:CDS |
| GTGATGTGTTGCCTTTGGGA+TGG | 0.549426 | 6_4:-21548773 | Msa0981950:CDS |
| ATTCATGTGTCCAGTTTGCA+AGG | 0.549705 | 6_4:-21545476 | Msa0981950:CDS |
| CAGCTTGACCTTTGATGAGA+AGG | 0.551090 | 6_4:-21547458 | Msa0981950:CDS |
| GGCAACAGAAGCAGCAGCAG+GGG | 0.553512 | 6_4:+21547633 | None:intergenic |
| CTGGAGACTCTTCTGCTCCC+AGG | 0.553635 | 6_4:+21547215 | None:intergenic |
| GTCGTTGGTCCTGCTCCTCG+CGG | 0.554081 | 6_4:+21547611 | None:intergenic |
| AGTGATTTGGTTGGGCAGTG+GGG | 0.558863 | 6_4:-21548840 | Msa0981950:CDS |
| CCTGATACTTCTGAAGGTAA+AGG | 0.558865 | 6_4:-21546824 | Msa0981950:CDS |
| GAGGTCGGGAGTAGGTGCGG+TGG | 0.560298 | 6_4:+21549228 | None:intergenic |
| ATATGCATCCTTCTCATCAA+AGG | 0.563994 | 6_4:+21547450 | None:intergenic |
| AATCAACGGTTCAGATGGAA+TGG | 0.565745 | 6_4:-21549397 | Msa0981950:CDS |
| GAAAGTGAAAACGCATTTGG+AGG | 0.566521 | 6_4:-21548994 | Msa0981950:CDS |
| TCGGCGGTGAGGTCGGGAGT+AGG | 0.567506 | 6_4:+21549220 | None:intergenic |
| ACACTTCGATATATCTATGC+AGG | 0.569196 | 6_4:+21544878 | None:intergenic |
| GATACCTGTTTCAGAAATTG+CGG | 0.569571 | 6_4:-21547083 | Msa0981950:CDS |
| ATGATGATGCGGTGGTCGGA+GGG | 0.570896 | 6_4:+21549158 | None:intergenic |
| GCCAACTTCTAAAGAAAATG+TGG | 0.571874 | 6_4:-21546549 | Msa0981950:CDS |
| ACTCTATCAACTCCAAAAGC+TGG | 0.574976 | 6_4:+21544915 | None:intergenic |
| CCATCTTTGCATCAACAACT+CGG | 0.577011 | 6_4:+21546903 | None:intergenic |
| AATGCTGGCCATCTTTAGAC+TGG | 0.579372 | 6_4:-21545409 | Msa0981950:intron |
| TCTGGGAATCACATGAAACC+TGG | 0.581198 | 6_4:-21546719 | Msa0981950:CDS |
| TTCTGCATTCAGCTCCGACA+AGG | 0.583172 | 6_4:-21546471 | Msa0981950:intron |
| GATTGTTCTGGGGATACCGA+GGG | 0.583211 | 6_4:+21546506 | None:intergenic |
| TCACCACCAGGCAATGCCAA+TGG | 0.583467 | 6_4:+21549047 | None:intergenic |
| GATGATGATGCGGTGGTCGG+AGG | 0.583551 | 6_4:+21549157 | None:intergenic |
| CACAGTTACAAATCACTCAA+AGG | 0.590461 | 6_4:-21547705 | Msa0981950:CDS |
| GAAGAAGGAAGAAGAATCAA+CGG | 0.590986 | 6_4:-21549411 | Msa0981950:CDS |
| GCGGCGCGACGCGACATCGG+CGG | 0.592768 | 6_4:+21549204 | None:intergenic |
| GTGTATGGAGTTCCATTGAA+CGG | 0.593102 | 6_4:+21544714 | None:intergenic |
| GGGCAACAGAAGCAGCAGCA+GGG | 0.593793 | 6_4:+21547632 | None:intergenic |
| CATGTATTTGCACATCTGCA+AGG | 0.593829 | 6_4:+21547503 | None:intergenic |
| GGTGAGGTCGGGAGTAGGTG+CGG | 0.595345 | 6_4:+21549225 | None:intergenic |
| AGGTAGTCCTCGTTTACCGA+TGG | 0.597128 | 6_4:-21546957 | Msa0981950:CDS |
| GCAAATGACATAGTGGTGCA+AGG | 0.597159 | 6_4:-21545646 | Msa0981950:CDS |
| GGAGATAGCGAGAAGGACGG+AGG | 0.599301 | 6_4:-21548898 | Msa0981950:CDS |
| GCTTGTAGATTTGAGGTCGA+AGG | 0.600873 | 6_4:+21549304 | None:intergenic |
| AGCAGAAGAGTCTCCAGTCA+CGG | 0.602098 | 6_4:-21547209 | Msa0981950:CDS |
| AGTCCTCGTTTACCGATGGA+TGG | 0.602501 | 6_4:-21546953 | Msa0981950:CDS |
| TGATGATGCGGTGGTCGGAG+GGG | 0.603731 | 6_4:+21549159 | None:intergenic |
| TCCAAAACCTTATATATCTG+CGG | 0.604840 | 6_4:+21548700 | None:intergenic |
| TTCTGAAGGTAAAGGTGATG+TGG | 0.604907 | 6_4:-21546816 | Msa0981950:CDS |
| TGATTTGGCGGCGTTATCGG+AGG | 0.605133 | 6_4:-21548940 | Msa0981950:CDS |
| CTGGTGGTGAAGTGAGGAAG+AGG | 0.605528 | 6_4:-21549034 | Msa0981950:CDS |
| AAGGTTCTCCATTTCCAGCA+AGG | 0.609362 | 6_4:+21547522 | None:intergenic |
| AGGTATCGTATTTAGTGTAG+AGG | 0.610633 | 6_4:+21547099 | None:intergenic |
| CAAATGACATAGTGGTGCAA+GGG | 0.613652 | 6_4:-21545645 | Msa0981950:CDS |
| AACTGGACACATGAATCCAA+CGG | 0.616659 | 6_4:+21545483 | None:intergenic |
| ATTCCCAGATGAATGAAGCA+AGG | 0.616754 | 6_4:+21546733 | None:intergenic |
| ATCGTATTTAGTGTAGAGGA+TGG | 0.619864 | 6_4:+21547103 | None:intergenic |
| TCGGAATCCTTCAATTCCGG+AGG | 0.621454 | 6_4:-21549081 | Msa0981950:CDS |
| AGATTGTTCTGGGGATACCG+AGG | 0.623417 | 6_4:+21546505 | None:intergenic |
| TTCCCAGATGAATGAAGCAA+GGG | 0.624115 | 6_4:+21546734 | None:intergenic |
| TTTCCATTGGCATTGCCTGG+TGG | 0.626819 | 6_4:-21549050 | Msa0981950:CDS |
| CAAATCAATGTGTTGGACAG+TGG | 0.627499 | 6_4:-21545439 | Msa0981950:CDS |
| AAGGACGGAGGGGTTAAAGG+AGG | 0.627983 | 6_4:-21548886 | Msa0981950:CDS |
| GGCGGAGATAGCGAGAAGGA+CGG | 0.630693 | 6_4:-21548901 | Msa0981950:CDS |
| CTGGTTGCACTAATACTAAG+GGG | 0.632921 | 6_4:-21546676 | Msa0981950:CDS |
| TGAATTGGCAAATGACATAG+TGG | 0.638698 | 6_4:-21545653 | Msa0981950:CDS |
| ATACAACATACAGCGAGTCA+AGG | 0.642596 | 6_4:+21544838 | None:intergenic |
| AGAAGAAGCTTCCATCCCAA+AGG | 0.644423 | 6_4:+21548762 | None:intergenic |
| TGCGGTGGGACCCAGCGCTG+TGG | 0.645149 | 6_4:+21549243 | None:intergenic |
| TAGTGGCAACAATCTGTCGT+TGG | 0.652025 | 6_4:+21547596 | None:intergenic |
| ATGTGGCGCTGACTGTTGAG+GGG | 0.652083 | 6_4:-21546799 | Msa0981950:CDS |
| TTGTGATGCAGACTGAGCTG+AGG | 0.653285 | 6_4:+21545612 | None:intergenic |
| GGTGGAGCATCCGTTTGCGG+CGG | 0.658249 | 6_4:-21548919 | Msa0981950:CDS |
| CATTGCCTGGTGGTGAAGTG+AGG | 0.660449 | 6_4:-21549040 | Msa0981950:CDS |
| ATCAAGTGAAAATATGAACA+AGG | 0.664405 | 6_4:-21544658 | Msa0981950:three_prime_UTR |
| GTTCCATCCATCGGTAAACG+AGG | 0.667007 | 6_4:+21546950 | None:intergenic |
| GATAGCTGCAATGATGTACC+TGG | 0.669520 | 6_4:-21546599 | Msa0981950:CDS |
| AGATAGCGAGAAGGACGGAG+GGG | 0.671249 | 6_4:-21548896 | Msa0981950:CDS |
| GATGCACCTGATACTTCTGA+AGG | 0.671872 | 6_4:-21546830 | Msa0981950:CDS |
| ACAACCACATGTGTATGGTG+TGG | 0.673155 | 6_4:-21545553 | Msa0981950:CDS |
| GTGGGAGTAGGAAGAAGTGG+CGG | 0.674637 | 6_4:+21549185 | None:intergenic |
| ACATGAACATTAGAAACACC+AGG | 0.677148 | 6_4:+21546581 | None:intergenic |
| GCGACGCGACATCGGCGGTG+AGG | 0.678710 | 6_4:+21549209 | None:intergenic |
| ATTGTTCTGGGGATACCGAG+GGG | 0.684093 | 6_4:+21546507 | None:intergenic |
| GTTAGCGATCTAAATCAGCA+AGG | 0.685979 | 6_4:-21546977 | Msa0981950:CDS |
| TGGTTGCACTAATACTAAGG+GGG | 0.689364 | 6_4:-21546675 | Msa0981950:CDS |
| CATTCTGGGAGTGAACTGCA+AGG | 0.690541 | 6_4:-21546770 | Msa0981950:CDS |
| TTGCGGCGGAGATAGCGAGA+AGG | 0.699580 | 6_4:-21548905 | Msa0981950:CDS |
| TGAGGTAATCGATGATGATG+CGG | 0.701630 | 6_4:+21549147 | None:intergenic |
| AGAATCCAAAGATTGTTCTG+GGG | 0.703845 | 6_4:+21546496 | None:intergenic |
| TATTCCACACCATACACATG+TGG | 0.705154 | 6_4:+21545549 | None:intergenic |
| GGTAATCGATGATGATGCGG+TGG | 0.707704 | 6_4:+21549150 | None:intergenic |
| TTCATCAGAAGACAACGAGG+CGG | 0.748047 | 6_4:-21547408 | Msa0981950:CDS |
| CTATTCATCAGAAGACAACG+AGG | 0.776944 | 6_4:-21547411 | Msa0981950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAAATTATTACTTTATT+TGG | - | chr6_4:21547941-21547960 | Msa0981950:intron | 10.0% |
| !! | AATTGATTATTTAATAACAA+TGG | - | chr6_4:21548730-21548749 | Msa0981950:CDS | 10.0% |
| !!! | ATTTTATATTCTTCAGTTTT+AGG | - | chr6_4:21545419-21545438 | Msa0981950:CDS | 15.0% |
| !! | TTTATACAAAAACACTTATA+TGG | + | chr6_4:21545544-21545563 | None:intergenic | 15.0% |
| !!! | TTTTTGTTTGAAACTAAATT+TGG | - | chr6_4:21546016-21546035 | Msa0981950:intron | 15.0% |
| !!! | TTTTGTTTGAAACTAAATTT+GGG | - | chr6_4:21546017-21546036 | Msa0981950:intron | 15.0% |
| !!! | TTTTATTTTGTATTGATCTA+TGG | - | chr6_4:21547829-21547848 | Msa0981950:intron | 15.0% |
| !! | TAAAAGCAAATTATCATTAT+TGG | - | chr6_4:21548212-21548231 | Msa0981950:intron | 15.0% |
| !! | TTATTTAATAACAATGGTTT+CGG | - | chr6_4:21548736-21548755 | Msa0981950:CDS | 15.0% |
| !!! | TGTTTGTTTTGTTGTTAATT+TGG | - | chr6_4:21545454-21545473 | Msa0981950:CDS | 20.0% |
| !! | TAATGTTCTTTGCTTATTAA+TGG | - | chr6_4:21545875-21545894 | Msa0981950:intron | 20.0% |
| !! | AATGTTCTTTGCTTATTAAT+GGG | - | chr6_4:21545876-21545895 | Msa0981950:intron | 20.0% |
| !!! | AGCTATTTCTAAAACAAATT+TGG | - | chr6_4:21545986-21546005 | Msa0981950:intron | 20.0% |
| !!! | GCTATTTCTAAAACAAATTT+GGG | - | chr6_4:21545987-21546006 | Msa0981950:intron | 20.0% |
| !! | AATTTATCCTAAAGAGTTTA+TGG | - | chr6_4:21546129-21546148 | Msa0981950:intron | 20.0% |
| !! | ACAAGAAGTTATGTTAAATA+TGG | - | chr6_4:21548504-21548523 | Msa0981950:intron | 20.0% |
| !!! | TTTTGTTTTCTTGTGTTTTT+TGG | + | chr6_4:21548979-21548998 | None:intergenic | 20.0% |
| !! | AATAAGTTGAAGATAGCTTA+TGG | - | chr6_4:21545654-21545673 | Msa0981950:CDS | 25.0% |
| ! | ACAAATGACAGCTATATTTA+TGG | + | chr6_4:21545777-21545796 | None:intergenic | 25.0% |
| !! | TGTTATTTGAATCACAGAAT+TGG | - | chr6_4:21545800-21545819 | Msa0981950:intron | 25.0% |
| ! | TATACTGTTTATCCTAACAT+GGG | + | chr6_4:21545933-21545952 | None:intergenic | 25.0% |
| ! | TTATACTGTTTATCCTAACA+TGG | + | chr6_4:21545934-21545953 | None:intergenic | 25.0% |
| ! | CTTATTTCCATAAACTCTTT+AGG | + | chr6_4:21546139-21546158 | None:intergenic | 25.0% |
| ! | AATAAGCTGAAAACAACTTA+TGG | - | chr6_4:21546153-21546172 | Msa0981950:intron | 25.0% |
| ! | AGCAAAAACAGATATGTTTA+TGG | + | chr6_4:21546242-21546261 | None:intergenic | 25.0% |
| ! | AATTATAACTCCATCTGAAA+CGG | + | chr6_4:21546731-21546750 | None:intergenic | 25.0% |
| ! | GATGGAGTTATAATTAAAGA+TGG | - | chr6_4:21546736-21546755 | Msa0981950:CDS | 25.0% |
| ! | TTCATGTTAGGAATTATTTG+AGG | - | chr6_4:21546827-21546846 | Msa0981950:CDS | 25.0% |
| ! | TATTATAGAGGATTCTATCA+TGG | - | chr6_4:21546969-21546988 | Msa0981950:CDS | 25.0% |
| ! | AATAAGAGTGACTTGAAAAT+TGG | - | chr6_4:21547471-21547490 | Msa0981950:CDS | 25.0% |
| ! | TCATATATGTTGCAAAATAG+AGG | - | chr6_4:21547688-21547707 | Msa0981950:CDS | 25.0% |
| ! | CATATATGTTGCAAAATAGA+GGG | - | chr6_4:21547689-21547708 | Msa0981950:CDS | 25.0% |
| ! | ACTATGTCTCTAATATATTC+AGG | - | chr6_4:21547806-21547825 | Msa0981950:intron | 25.0% |
| ! | TTCTCTTTGTAAGATATATG+TGG | + | chr6_4:21547924-21547943 | None:intergenic | 25.0% |
| ! | ATTATTGGAATCTATTGTCA+TGG | - | chr6_4:21548227-21548246 | Msa0981950:intron | 25.0% |
| ! | AAAAATAATAGCAGCAGATA+AGG | + | chr6_4:21548765-21548784 | None:intergenic | 25.0% |
| ! | AATCGCAAAGAATATGATAT+TGG | + | chr6_4:21549067-21549086 | None:intergenic | 25.0% |
| ! | ATTGAACTGCAAAAGTTTAA+AGG | + | chr6_4:21549116-21549135 | None:intergenic | 25.0% |
| ! | TCTTTATAAAAATCAGTAGC+AGG | - | chr6_4:21549138-21549157 | Msa0981950:CDS | 25.0% |
| ! | ACAATACTACATGATCATAT+CGG | + | chr6_4:21549318-21549337 | None:intergenic | 25.0% |
| ! | ATCAAGTGAAAATATGAACA+AGG | - | chr6_4:21549439-21549458 | Msa0981950:five_prime_UTR | 25.0% |
| ! | GCATATTAATAGTGATCTAT+CGG | - | chr6_4:21549488-21549507 | Msa0981950:intron | 25.0% |
| AACATAGAAGAAGATGAAGA+AGG | - | chr6_4:21544671-21544690 | Msa0981950:three_prime_UTR | 30.0% | |
| GAAGAGATTGTGAACAAAAA+CGG | - | chr6_4:21545125-21545144 | Msa0981950:intron | 30.0% | |
| ! | ATTGTTGATGCTTCTGATTT+TGG | - | chr6_4:21545302-21545321 | Msa0981950:intron | 30.0% |
| ! | AGCTTCTTCTTAGTTTGAAA+AGG | - | chr6_4:21545348-21545367 | Msa0981950:intron | 30.0% |
| ! | CTTAGTTTGAAAAGGAAAGA+TGG | - | chr6_4:21545356-21545375 | Msa0981950:intron | 30.0% |
| TTTATTGCCGCAGATATATA+AGG | - | chr6_4:21545390-21545409 | Msa0981950:intron | 30.0% | |
| TCCAAAACCTTATATATCTG+CGG | + | chr6_4:21545400-21545419 | None:intergenic | 30.0% | |
| AAGCTATCATGAAGAGTTTA+TGG | - | chr6_4:21545630-21545649 | Msa0981950:CDS | 30.0% | |
| CAACTTATGGACATTTCATA+AGG | - | chr6_4:21546166-21546185 | Msa0981950:intron | 30.0% | |
| TATGCAGTAGTCAATAGATA+AGG | - | chr6_4:21546193-21546212 | Msa0981950:intron | 30.0% | |
| GATATGTTTATGGCATGTTT+GGG | + | chr6_4:21546232-21546251 | None:intergenic | 30.0% | |
| AGATATGTTTATGGCATGTT+TGG | + | chr6_4:21546233-21546252 | None:intergenic | 30.0% | |
| !!! | CTGTTTTTGCTTGTTTGTTT+TGG | - | chr6_4:21546251-21546270 | Msa0981950:intron | 30.0% |
| AAAACACTTTATGACAGAAC+TGG | + | chr6_4:21546774-21546793 | None:intergenic | 30.0% | |
| !! | GTTCTGTCATAAAGTGTTTT+TGG | - | chr6_4:21546774-21546793 | Msa0981950:CDS | 30.0% |
| TGCTCAAAACTCTATTATAG+AGG | - | chr6_4:21546957-21546976 | Msa0981950:CDS | 30.0% | |
| !!! | GTTAGTTTTCTAGATAACAC+TGG | - | chr6_4:21547216-21547235 | Msa0981950:CDS | 30.0% |
| !! | ACCACATTTTCTTTAGAAGT+TGG | + | chr6_4:21547552-21547571 | None:intergenic | 30.0% |
| AAGAATCCAAAGATTGTTCT+GGG | + | chr6_4:21547605-21547624 | None:intergenic | 30.0% | |
| AAAGAATCCAAAGATTGTTC+TGG | + | chr6_4:21547606-21547625 | None:intergenic | 30.0% | |
| AGTTATGCATTATACCTTGT+CGG | + | chr6_4:21547643-21547662 | None:intergenic | 30.0% | |
| TAACTTATCCTTGCCATTAT+TGG | - | chr6_4:21547658-21547677 | Msa0981950:CDS | 30.0% | |
| TATGTGGAAAACATTCAAGA+GGG | + | chr6_4:21547908-21547927 | None:intergenic | 30.0% | |
| ATATGTGGAAAACATTCAAG+AGG | + | chr6_4:21547909-21547928 | None:intergenic | 30.0% | |
| !!! | TATTTGGGCATTCTTGTTTT+TGG | - | chr6_4:21547957-21547976 | Msa0981950:intron | 30.0% |
| !!! | ATTTGGGCATTCTTGTTTTT+GGG | - | chr6_4:21547958-21547977 | Msa0981950:intron | 30.0% |
| TTGGGGAGATAAGAAATTAT+AGG | - | chr6_4:21547976-21547995 | Msa0981950:intron | 30.0% | |
| GAGATAAGAAATTATAGGTC+TGG | - | chr6_4:21547981-21548000 | Msa0981950:intron | 30.0% | |
| ATCTCGGCATCAATAAAAAA+TGG | + | chr6_4:21548007-21548026 | None:intergenic | 30.0% | |
| ! | TATGATTTTGCAAGTGTTCA+AGG | - | chr6_4:21548403-21548422 | Msa0981950:intron | 30.0% |
| TTTCAGAATTAACAGCATCA+TGG | + | chr6_4:21548582-21548601 | None:intergenic | 30.0% | |
| TTACGAATAAACAGGATTGT+GGG | + | chr6_4:21549290-21549309 | None:intergenic | 30.0% | |
| TGTTGTAATTGTCTTAGTCT+TGG | - | chr6_4:21549357-21549376 | Msa0981950:CDS | 30.0% | |
| GAAGAAGGAAGAAGAATCAA+CGG | - | chr6_4:21544686-21544705 | Msa0981950:three_prime_UTR | 35.0% | |
| !! | AAGGTTGAAGGATCGATTTT+AGG | + | chr6_4:21544831-21544850 | None:intergenic | 35.0% |
| ! | TCCAAATGCGTTTTCACTTT+CGG | + | chr6_4:21545104-21545123 | None:intergenic | 35.0% |
| !! | AAACGGTGTTGTGATTGATT+TGG | - | chr6_4:21545142-21545161 | Msa0981950:intron | 35.0% |
| !!! | GTTAGGGTTTTTGAGTGATT+TGG | - | chr6_4:21545244-21545263 | Msa0981950:intron | 35.0% |
| !!! | GGTTTTTGAGTGATTTGGTT+GGG | - | chr6_4:21545249-21545268 | Msa0981950:intron | 35.0% |
| ATGACATTAATGTGCTTTGC+TGG | - | chr6_4:21545478-21545497 | Msa0981950:CDS | 35.0% | |
| AGACTATTTGAGAGAGCTTA+TGG | + | chr6_4:21545698-21545717 | None:intergenic | 35.0% | |
| TATGCAGTAGTCAATAGGTA+AGG | - | chr6_4:21545728-21545747 | Msa0981950:CDS | 35.0% | |
| AAATTTGCGAGGGACTAAAA+TGG | - | chr6_4:21546046-21546065 | Msa0981950:intron | 35.0% | |
| AATTTGCGAGGGACTAAAAT+GGG | - | chr6_4:21546047-21546066 | Msa0981950:intron | 35.0% | |
| TTGATATTCTCCAGTCCTAA+TGG | - | chr6_4:21546304-21546323 | Msa0981950:intron | 35.0% | |
| CACAGTTACAAATCACTCAA+AGG | - | chr6_4:21546392-21546411 | Msa0981950:intron | 35.0% | |
| AAGGAGTGAAAATGTACTTC+CGG | - | chr6_4:21546411-21546430 | Msa0981950:intron | 35.0% | |
| CTTGAATCGTTCATTAGAGA+CGG | + | chr6_4:21546548-21546567 | None:intergenic | 35.0% | |
| ATATGCATCCTTCTCATCAA+AGG | + | chr6_4:21546650-21546669 | None:intergenic | 35.0% | |
| TCTTCTGATGAATAGACAAC+AGG | + | chr6_4:21546681-21546700 | None:intergenic | 35.0% | |
| !! | GTTTTGAGCAATTTCGATGA+GGG | + | chr6_4:21546947-21546966 | None:intergenic | 35.0% |
| !!! | AGTTTTGAGCAATTTCGATG+AGG | + | chr6_4:21546948-21546967 | None:intergenic | 35.0% |
| ATCGTATTTAGTGTAGAGGA+TGG | + | chr6_4:21546997-21547016 | None:intergenic | 35.0% | |
| ! | AGGTATCGTATTTAGTGTAG+AGG | + | chr6_4:21547001-21547020 | None:intergenic | 35.0% |
| GATACCTGTTTCAGAAATTG+CGG | - | chr6_4:21547014-21547033 | Msa0981950:CDS | 35.0% | |
| ATAAATGCTGAGTCTCCATT+CGG | - | chr6_4:21547057-21547076 | Msa0981950:CDS | 35.0% | |
| AAAATGGAAAAGAGCTTGAC+TGG | - | chr6_4:21547087-21547106 | Msa0981950:CDS | 35.0% | |
| TCCAAGAAGAGTGAAAATTC+TGG | - | chr6_4:21547402-21547421 | Msa0981950:CDS | 35.0% | |
| ! | ACCAGAATTTTCACTCTTCT+TGG | + | chr6_4:21547406-21547425 | None:intergenic | 35.0% |
| ! | TTCTGGTTGCACTAATACTA+AGG | - | chr6_4:21547419-21547438 | Msa0981950:CDS | 35.0% |
| TCTGGTTGCACTAATACTAA+GGG | - | chr6_4:21547420-21547439 | Msa0981950:CDS | 35.0% | |
| ACATGAACATTAGAAACACC+AGG | + | chr6_4:21547519-21547538 | None:intergenic | 35.0% | |
| ! | GCCAACTTCTAAAGAAAATG+TGG | - | chr6_4:21547548-21547567 | Msa0981950:CDS | 35.0% |
| AGAAAATGTGGTCCAATCTA+AGG | - | chr6_4:21547560-21547579 | Msa0981950:CDS | 35.0% | |
| AGAATCCAAAGATTGTTCTG+GGG | + | chr6_4:21547604-21547623 | None:intergenic | 35.0% | |
| ATATGAAACCCTGCCAATAA+TGG | + | chr6_4:21547674-21547693 | None:intergenic | 35.0% | |
| TTCCTACAAGTATCATAGCA+GGG | - | chr6_4:21547716-21547735 | Msa0981950:CDS | 35.0% | |
| TTCAATCCATGGTTCAACAT+GGG | + | chr6_4:21547880-21547899 | None:intergenic | 35.0% | |
| !!! | TTTGGGCATTCTTGTTTTTG+GGG | - | chr6_4:21547959-21547978 | Msa0981950:intron | 35.0% |
| CATGCAAGCATTCTTAATCT+CGG | + | chr6_4:21548023-21548042 | None:intergenic | 35.0% | |
| AAGAGTAGGAGAGATGTATA+AGG | + | chr6_4:21548066-21548085 | None:intergenic | 35.0% | |
| ATCTCTCCTACTCTTAGATT+AGG | - | chr6_4:21548071-21548090 | Msa0981950:intron | 35.0% | |
| AAGACACCTAATCTAAGAGT+AGG | + | chr6_4:21548080-21548099 | None:intergenic | 35.0% | |
| TACTCTTAGATTAGGTGTCT+TGG | - | chr6_4:21548079-21548098 | Msa0981950:intron | 35.0% | |
| ATTAGGTGTCTTGGAGATTT+GGG | - | chr6_4:21548088-21548107 | Msa0981950:intron | 35.0% | |
| !! | TCTTGTTATTCCTCATTGAC+AGG | - | chr6_4:21548339-21548358 | Msa0981950:intron | 35.0% |
| !! | CTTGTTATTCCTCATTGACA+GGG | - | chr6_4:21548340-21548359 | Msa0981950:intron | 35.0% |
| ! | TTGTTATTCCTCATTGACAG+GGG | - | chr6_4:21548341-21548360 | Msa0981950:intron | 35.0% |
| TATCTTCTAACCTCAATTCC+TGG | + | chr6_4:21548369-21548388 | None:intergenic | 35.0% | |
| TCTTGATGTGTCAACTGAAT+TGG | - | chr6_4:21548429-21548448 | Msa0981950:intron | 35.0% | |
| TGAATTGGCAAATGACATAG+TGG | - | chr6_4:21548444-21548463 | Msa0981950:intron | 35.0% | |
| GAAATACAATCAGATTCCGT+TGG | - | chr6_4:21548598-21548617 | Msa0981950:intron | 35.0% | |
| AACGATTACCAGTCTAAAGA+TGG | + | chr6_4:21548699-21548718 | None:intergenic | 35.0% | |
| GACTACGATCTATGTCAATT+AGG | + | chr6_4:21548792-21548811 | None:intergenic | 35.0% | |
| CACAAGAAAACAAAACAAGC+TGG | - | chr6_4:21548984-21549003 | Msa0981950:CDS | 35.0% | |
| ! | AGAAGAGAAAATCCAGCTTT+TGG | - | chr6_4:21549170-21549189 | Msa0981950:CDS | 35.0% |
| ! | GTTGATAGAGTGCTCAATTA+TGG | - | chr6_4:21549194-21549213 | Msa0981950:CDS | 35.0% |
| ACACTTCGATATATCTATGC+AGG | + | chr6_4:21549222-21549241 | None:intergenic | 35.0% | |
| CTTACGAATAAACAGGATTG+TGG | + | chr6_4:21549291-21549310 | None:intergenic | 35.0% | |
| ! | CGGTTTTCTTACGAATAAAC+AGG | + | chr6_4:21549298-21549317 | None:intergenic | 35.0% |
| !! | TGTAATTGTCTTAGTCTTGG+AGG | - | chr6_4:21549360-21549379 | Msa0981950:CDS | 35.0% |
| CATTACACACTAGTTGTGTA+TGG | + | chr6_4:21549401-21549420 | None:intergenic | 35.0% | |
| GCTCACAGTGAAGTTGAAAA+TGG | + | chr6_4:21544638-21544657 | None:intergenic | 40.0% | |
| AGAAGAATCAACGGTTCAGA+TGG | - | chr6_4:21544695-21544714 | Msa0981950:three_prime_UTR | 40.0% | |
| AATCAACGGTTCAGATGGAA+TGG | - | chr6_4:21544700-21544719 | Msa0981950:three_prime_UTR | 40.0% | |
| CGATTTCGCTTGTAGATTTG+AGG | + | chr6_4:21544803-21544822 | None:intergenic | 40.0% | |
| ! | TGAGGTAATCGATGATGATG+CGG | + | chr6_4:21544953-21544972 | None:intergenic | 40.0% |
| CTTCTCTGATGAACTGTTTG+AGG | + | chr6_4:21544971-21544990 | None:intergenic | 40.0% | |
| AATGGAAATTCCTTCACCTC+CGG | + | chr6_4:21545035-21545054 | None:intergenic | 40.0% | |
| ACCGAAAGTGAAAACGCATT+TGG | - | chr6_4:21545100-21545119 | Msa0981950:intron | 40.0% | |
| GAAAGTGAAAACGCATTTGG+AGG | - | chr6_4:21545103-21545122 | Msa0981950:intron | 40.0% | |
| !!! | GGGTTTTTGAGTGATTTGGT+TGG | - | chr6_4:21545248-21545267 | Msa0981950:intron | 40.0% |
| !!! | TTTTGGTGATGTGTTGCCTT+TGG | - | chr6_4:21545319-21545338 | Msa0981950:intron | 40.0% |
| !! | TTTGGTGATGTGTTGCCTTT+GGG | - | chr6_4:21545320-21545339 | Msa0981950:intron | 40.0% |
| ! | GCCGCAGATATATAAGGTTT+TGG | - | chr6_4:21545396-21545415 | Msa0981950:intron | 40.0% |
| AGCTCTCTCAAATAGTCTCA+TGG | - | chr6_4:21545700-21545719 | Msa0981950:CDS | 40.0% | |
| GCTCTCTCAAATAGTCTCAT+GGG | - | chr6_4:21545701-21545720 | Msa0981950:CDS | 40.0% | |
| GTGCTTATGCAGTAGTCAAT+AGG | - | chr6_4:21545723-21545742 | Msa0981950:CDS | 40.0% | |
| ! | TCTTTGCTTATTAATGGGCC+AGG | - | chr6_4:21545881-21545900 | Msa0981950:intron | 40.0% |
| CTAAAATGGGTCTTCACTCA+AGG | - | chr6_4:21546060-21546079 | Msa0981950:intron | 40.0% | |
| ! | TCGTATCTGCAGTCTCTTTT+TGG | - | chr6_4:21546358-21546377 | Msa0981950:intron | 40.0% |
| ! | ACCAGACACATTTGAGTTAG+TGG | + | chr6_4:21546521-21546540 | None:intergenic | 40.0% |
| CGTCTCTAATGAACGATTCA+AGG | - | chr6_4:21546546-21546565 | Msa0981950:CDS | 40.0% | |
| ATTCAAGGAAATTGCCTTGC+TGG | - | chr6_4:21546561-21546580 | Msa0981950:CDS | 40.0% | |
| CATGTATTTGCACATCTGCA+AGG | + | chr6_4:21546597-21546616 | None:intergenic | 40.0% | |
| CTATTCATCAGAAGACAACG+AGG | - | chr6_4:21546686-21546705 | Msa0981950:CDS | 40.0% | |
| GTCGCTACAATAGTCATGTT+GGG | - | chr6_4:21546803-21546822 | Msa0981950:CDS | 40.0% | |
| GTCATGTTGGGATTCATGTT+AGG | - | chr6_4:21546815-21546834 | Msa0981950:CDS | 40.0% | |
| ! | TCCATTCGGTGAACAGAAAA+TGG | - | chr6_4:21547071-21547090 | Msa0981950:CDS | 40.0% |
| ! | TCCATTTTCTGTTCACCGAA+TGG | + | chr6_4:21547075-21547094 | None:intergenic | 40.0% |
| GTTAGCGATCTAAATCAGCA+AGG | - | chr6_4:21547120-21547139 | Msa0981950:CDS | 40.0% | |
| TCCTCTATTGTTCCATCCAT+CGG | + | chr6_4:21547159-21547178 | None:intergenic | 40.0% | |
| CCATCTTTGCATCAACAACT+CGG | + | chr6_4:21547197-21547216 | None:intergenic | 40.0% | |
| !! | CCTTTACCTTCAGAAGTATC+AGG | + | chr6_4:21547276-21547295 | None:intergenic | 40.0% |
| ! | CCTGATACTTCTGAAGGTAA+AGG | - | chr6_4:21547273-21547292 | Msa0981950:CDS | 40.0% |
| ! | TTCTGAAGGTAAAGGTGATG+TGG | - | chr6_4:21547281-21547300 | Msa0981950:CDS | 40.0% |
| TTGAGGGGTTTGATCATTCT+GGG | - | chr6_4:21547313-21547332 | Msa0981950:CDS | 40.0% | |
| TTCCCAGATGAATGAAGCAA+GGG | + | chr6_4:21547366-21547385 | None:intergenic | 40.0% | |
| ATTCCCAGATGAATGAAGCA+AGG | + | chr6_4:21547367-21547386 | None:intergenic | 40.0% | |
| ! | TTTTCACTCTTCTTGGATCC+AGG | + | chr6_4:21547399-21547418 | None:intergenic | 40.0% |
| CTGGTTGCACTAATACTAAG+GGG | - | chr6_4:21547421-21547440 | Msa0981950:CDS | 40.0% | |
| TGGTTGCACTAATACTAAGG+GGG | - | chr6_4:21547422-21547441 | Msa0981950:CDS | 40.0% | |
| AGGGGTTAGAAACCTTAGAT+TGG | + | chr6_4:21547575-21547594 | None:intergenic | 40.0% | |
| ! | ATCTAAGGTTTCTAACCCCT+CGG | - | chr6_4:21547575-21547594 | Msa0981950:CDS | 40.0% |
| TTATCCTTGCCATTATTGGC+AGG | - | chr6_4:21547662-21547681 | Msa0981950:CDS | 40.0% | |
| TATCCTTGCCATTATTGGCA+GGG | - | chr6_4:21547663-21547682 | Msa0981950:CDS | 40.0% | |
| GTTCCTACAAGTATCATAGC+AGG | - | chr6_4:21547715-21547734 | Msa0981950:CDS | 40.0% | |
| AGTAAGCACAATAGACCACA+AGG | + | chr6_4:21547782-21547801 | None:intergenic | 40.0% | |
| CTTCAATCCATGGTTCAACA+TGG | + | chr6_4:21547881-21547900 | None:intergenic | 40.0% | |
| CGAGATTAAGAATGCTTGCA+TGG | - | chr6_4:21548021-21548040 | Msa0981950:intron | 40.0% | |
| GATTAGGTGTCTTGGAGATT+TGG | - | chr6_4:21548087-21548106 | Msa0981950:intron | 40.0% | |
| CAATCAGTTAAGTGCAGAGT+GGG | + | chr6_4:21548291-21548310 | None:intergenic | 40.0% | |
| CAAATGACATAGTGGTGCAA+GGG | - | chr6_4:21548452-21548471 | Msa0981950:intron | 40.0% | |
| TATTCCACACCATACACATG+TGG | + | chr6_4:21548551-21548570 | None:intergenic | 40.0% | |
| AACTGGACACATGAATCCAA+CGG | + | chr6_4:21548617-21548636 | None:intergenic | 40.0% | |
| ATTCATGTGTCCAGTTTGCA+AGG | - | chr6_4:21548621-21548640 | Msa0981950:intron | 40.0% | |
| ! | GAGATTTTTGCCTTGCAAAC+TGG | + | chr6_4:21548634-21548653 | None:intergenic | 40.0% |
| GTTTGCAAGGCAAAAATCTC+TGG | - | chr6_4:21548634-21548653 | Msa0981950:intron | 40.0% | |
| CTCTGGTCAAATCAATGTGT+TGG | - | chr6_4:21548651-21548670 | Msa0981950:intron | 40.0% | |
| CAAATCAATGTGTTGGACAG+TGG | - | chr6_4:21548658-21548677 | Msa0981950:intron | 40.0% | |
| CGATGCACTCAGTTTATCAA+AGG | + | chr6_4:21548892-21548911 | None:intergenic | 40.0% | |
| TTGATAAACTGAGTGCATCG+TGG | - | chr6_4:21548892-21548911 | Msa0981950:CDS | 40.0% | |
| ACTCTATCAACTCCAAAAGC+TGG | + | chr6_4:21549185-21549204 | None:intergenic | 40.0% | |
| ATACAACATACAGCGAGTCA+AGG | + | chr6_4:21549262-21549281 | None:intergenic | 40.0% | |
| GTGTATGGAGTTCCATTGAA+CGG | + | chr6_4:21549386-21549405 | None:intergenic | 40.0% | |
| ! | GCTTGTAGATTTGAGGTCGA+AGG | + | chr6_4:21544796-21544815 | None:intergenic | 45.0% |
| ! | AGCTCAACAGTGTCGAACTT+CGG | + | chr6_4:21544996-21545015 | None:intergenic | 45.0% |
| AGTTCGACACTGTTGAGCTT+CGG | - | chr6_4:21544997-21545016 | Msa0981950:intron | 45.0% | |
| GCTTCGGAATCCTTCAATTC+CGG | - | chr6_4:21545013-21545032 | Msa0981950:intron | 45.0% | |
| GGAGGTGAAGGAATTTCCAT+TGG | - | chr6_4:21545034-21545053 | Msa0981950:intron | 45.0% | |
| GAATTTCCATTGGCATTGCC+TGG | - | chr6_4:21545044-21545063 | Msa0981950:intron | 45.0% | |
| AAGTGAGGAAGAGGAAGAGA+GGG | - | chr6_4:21545072-21545091 | Msa0981950:intron | 45.0% | |
| !! | CGGTGTTGTGATTGATTTGG+CGG | - | chr6_4:21545145-21545164 | Msa0981950:intron | 45.0% |
| !! | GATTGATTTGGCGGCGTTAT+CGG | - | chr6_4:21545154-21545173 | Msa0981950:intron | 45.0% |
| AAGGAGGAAGAGGAGTTGTT+AGG | - | chr6_4:21545227-21545246 | Msa0981950:intron | 45.0% | |
| AGGAGGAAGAGGAGTTGTTA+GGG | - | chr6_4:21545228-21545247 | Msa0981950:intron | 45.0% | |
| AGAAGAAGCTTCCATCCCAA+AGG | + | chr6_4:21545338-21545357 | None:intergenic | 45.0% | |
| AAAGGAAAGATGGTCGTGCT+TGG | - | chr6_4:21545366-21545385 | Msa0981950:intron | 45.0% | |
| ! | TTATTAATGGGCCAGGAGTG+AGG | - | chr6_4:21545888-21545907 | Msa0981950:intron | 45.0% |
| AAAGGAAAACTCCTCACTCC+TGG | + | chr6_4:21545902-21545921 | None:intergenic | 45.0% | |
| CTAACATGGGCTCACATCAA+AGG | + | chr6_4:21545920-21545939 | None:intergenic | 45.0% | |
| CTTTGATGTGAGCCCATGTT+AGG | - | chr6_4:21545918-21545937 | Msa0981950:intron | 45.0% | |
| TTGGGCACAAGAAATTTGCG+AGG | - | chr6_4:21546035-21546054 | Msa0981950:intron | 45.0% | |
| TGGGCACAAGAAATTTGCGA+GGG | - | chr6_4:21546036-21546055 | Msa0981950:intron | 45.0% | |
| AAACTGCTGTCCATTAGGAC+TGG | + | chr6_4:21546317-21546336 | None:intergenic | 45.0% | |
| GACAGAAACTGCTGTCCATT+AGG | + | chr6_4:21546322-21546341 | None:intergenic | 45.0% | |
| TCAGTAGTCACTCTCTGTTC+CGG | + | chr6_4:21546433-21546452 | None:intergenic | 45.0% | |
| TAGTGGCAACAATCTGTCGT+TGG | + | chr6_4:21546504-21546523 | None:intergenic | 45.0% | |
| GCCACTAACTCAAATGTGTC+TGG | - | chr6_4:21546517-21546536 | Msa0981950:CDS | 45.0% | |
| GGAAATTGCCTTGCTGGAAA+TGG | - | chr6_4:21546567-21546586 | Msa0981950:CDS | 45.0% | |
| AAGGTTCTCCATTTCCAGCA+AGG | + | chr6_4:21546578-21546597 | None:intergenic | 45.0% | |
| CAGCTTGACCTTTGATGAGA+AGG | - | chr6_4:21546639-21546658 | Msa0981950:CDS | 45.0% | |
| TTCATCAGAAGACAACGAGG+CGG | - | chr6_4:21546689-21546708 | Msa0981950:CDS | 45.0% | |
| CTTGGTTCATCCGTTTCAGA+TGG | - | chr6_4:21546718-21546737 | Msa0981950:CDS | 45.0% | |
| CGTCGCTACAATAGTCATGT+TGG | - | chr6_4:21546802-21546821 | Msa0981950:CDS | 45.0% | |
| ACCTTCAAGGATCACGAAGA+TGG | - | chr6_4:21546918-21546937 | Msa0981950:CDS | 45.0% | |
| TCCATCTTCGTGATCCTTGA+AGG | + | chr6_4:21546922-21546941 | None:intergenic | 45.0% | |
| !! | CCAACCGCAATTTCTGAAAC+AGG | + | chr6_4:21547021-21547040 | None:intergenic | 45.0% |
| CCTGTTTCAGAAATTGCGGT+TGG | - | chr6_4:21547018-21547037 | Msa0981950:CDS | 45.0% | |
| ACCGATGGATGGAACAATAG+AGG | - | chr6_4:21547155-21547174 | Msa0981950:CDS | 45.0% | |
| CCGAGTTGTTGATGCAAAGA+TGG | - | chr6_4:21547194-21547213 | Msa0981950:CDS | 45.0% | |
| GATGCACCTGATACTTCTGA+AGG | - | chr6_4:21547267-21547286 | Msa0981950:CDS | 45.0% | |
| GTTGAGGGGTTTGATCATTC+TGG | - | chr6_4:21547312-21547331 | Msa0981950:CDS | 45.0% | |
| AGTCCCTTGCTTCATTCATC+TGG | - | chr6_4:21547360-21547379 | Msa0981950:CDS | 45.0% | |
| GTCCCTTGCTTCATTCATCT+GGG | - | chr6_4:21547361-21547380 | Msa0981950:CDS | 45.0% | |
| TCTGGGAATCACATGAAACC+TGG | - | chr6_4:21547378-21547397 | Msa0981950:CDS | 45.0% | |
| GATAGCTGCAATGATGTACC+TGG | - | chr6_4:21547498-21547517 | Msa0981950:CDS | 45.0% | |
| GGTATCCCCAGAACAATCTT+TGG | - | chr6_4:21547596-21547615 | Msa0981950:CDS | 45.0% | |
| AAACCCTGCCAATAATGGCA+AGG | + | chr6_4:21547669-21547688 | None:intergenic | 45.0% | |
| GACCCTGCTATGATACTTGT+AGG | + | chr6_4:21547721-21547740 | None:intergenic | 45.0% | |
| AGCAGGGTCTTCTTAAAACG+TGG | - | chr6_4:21547732-21547751 | Msa0981950:CDS | 45.0% | |
| GACCACAAGGCATGCATAAA+GGG | + | chr6_4:21547769-21547788 | None:intergenic | 45.0% | |
| AGACCACAAGGCATGCATAA+AGG | + | chr6_4:21547770-21547789 | None:intergenic | 45.0% | |
| ACAAAGCCCATGTTGAACCA+TGG | - | chr6_4:21547871-21547890 | Msa0981950:intron | 45.0% | |
| ! | GTTGAAAGTACACAAGCACG+TGG | + | chr6_4:21548137-21548156 | None:intergenic | 45.0% |
| CCAATCAGTTAAGTGCAGAG+TGG | + | chr6_4:21548292-21548311 | None:intergenic | 45.0% | |
| CCACTCTGCACTTAACTGAT+TGG | - | chr6_4:21548289-21548308 | Msa0981950:intron | 45.0% | |
| GCAAATGACATAGTGGTGCA+AGG | - | chr6_4:21548451-21548470 | Msa0981950:intron | 45.0% | |
| AGCTCACAACCACATGTGTA+TGG | - | chr6_4:21548539-21548558 | Msa0981950:intron | 45.0% | |
| ACAACCACATGTGTATGGTG+TGG | - | chr6_4:21548544-21548563 | Msa0981950:intron | 45.0% | |
| GTCTAAAGATGGCCAGCATT+TGG | + | chr6_4:21548688-21548707 | None:intergenic | 45.0% | |
| AATGCTGGCCATCTTTAGAC+TGG | - | chr6_4:21548688-21548707 | Msa0981950:intron | 45.0% | |
| ATACGCACCAGTGTCTGAAT+TGG | - | chr6_4:21548863-21548882 | Msa0981950:CDS | 45.0% | |
| !!! | AAAAAATTATTACTTTATTT+GGG | - | chr6_4:21547942-21547961 | Msa0981950:intron | 5.0% |
| AGAGTGGGAGTAGGAAGAAG+TGG | + | chr6_4:21544918-21544937 | None:intergenic | 50.0% | |
| ! | ATCGATGATGATGCGGTGGT+CGG | + | chr6_4:21544946-21544965 | None:intergenic | 50.0% |
| ! | GGTAATCGATGATGATGCGG+TGG | + | chr6_4:21544950-21544969 | None:intergenic | 50.0% |
| TCGGAATCCTTCAATTCCGG+AGG | - | chr6_4:21545016-21545035 | Msa0981950:intron | 50.0% | |
| TCCTTCAATTCCGGAGGTGA+AGG | - | chr6_4:21545022-21545041 | Msa0981950:intron | 50.0% | |
| TCCTTCACCTCCGGAATTGA+AGG | + | chr6_4:21545026-21545045 | None:intergenic | 50.0% | |
| TTTCCATTGGCATTGCCTGG+TGG | - | chr6_4:21545047-21545066 | Msa0981950:intron | 50.0% | |
| GAAGTGAGGAAGAGGAAGAG+AGG | - | chr6_4:21545071-21545090 | Msa0981950:intron | 50.0% | |
| !! | TGAGTGATTTGGTTGGGCAG+TGG | - | chr6_4:21545255-21545274 | Msa0981950:intron | 50.0% |
| !! | GAGTGATTTGGTTGGGCAGT+GGG | - | chr6_4:21545256-21545275 | Msa0981950:intron | 50.0% |
| !! | AGTGATTTGGTTGGGCAGTG+GGG | - | chr6_4:21545257-21545276 | Msa0981950:intron | 50.0% |
| ! | GTGATGTGTTGCCTTTGGGA+TGG | - | chr6_4:21545324-21545343 | Msa0981950:intron | 50.0% |
| GAGGAGAGCTGAAGATTTGC+CGG | - | chr6_4:21546846-21546865 | Msa0981950:CDS | 50.0% | |
| AGGAGAGCTGAAGATTTGCC+GGG | - | chr6_4:21546847-21546866 | Msa0981950:CDS | 50.0% | |
| TCTTCTGCTCCCAGGACATT+AGG | + | chr6_4:21546877-21546896 | None:intergenic | 50.0% | |
| AGCAGAAGAGTCTCCAGTCA+CGG | - | chr6_4:21546888-21546907 | Msa0981950:CDS | 50.0% | |
| TCACGGATGAGACACCTTCA+AGG | - | chr6_4:21546905-21546924 | Msa0981950:CDS | 50.0% | |
| AGGTAGTCCTCGTTTACCGA+TGG | - | chr6_4:21547140-21547159 | Msa0981950:CDS | 50.0% | |
| AGTCCTCGTTTACCGATGGA+TGG | - | chr6_4:21547144-21547163 | Msa0981950:CDS | 50.0% | |
| GTTCCATCCATCGGTAAACG+AGG | + | chr6_4:21547150-21547169 | None:intergenic | 50.0% | |
| ! | CATTCTGGGAGTGAACTGCA+AGG | - | chr6_4:21547327-21547346 | Msa0981950:CDS | 50.0% |
| !! | ATTGTTCTGGGGATACCGAG+GGG | + | chr6_4:21547593-21547612 | None:intergenic | 50.0% |
| !! | GATTGTTCTGGGGATACCGA+GGG | + | chr6_4:21547594-21547613 | None:intergenic | 50.0% |
| !! | AGATTGTTCTGGGGATACCG+AGG | + | chr6_4:21547595-21547614 | None:intergenic | 50.0% |
| TTCTGCATTCAGCTCCGACA+AGG | - | chr6_4:21547626-21547645 | Msa0981950:CDS | 50.0% | |
| AGCCCTTTATGCATGCCTTG+TGG | - | chr6_4:21547764-21547783 | Msa0981950:CDS | 50.0% | |
| !! | AGAGGGAGCACTTCAATCCA+TGG | + | chr6_4:21547891-21547910 | None:intergenic | 50.0% |
| AGGTGTCTTGGAGATTTGGG+TGG | - | chr6_4:21548091-21548110 | Msa0981950:intron | 50.0% | |
| TGGCGCTAGTTGCAAGGTTA+TGG | - | chr6_4:21548111-21548130 | Msa0981950:intron | 50.0% | |
| TTGTGATGCAGACTGAGCTG+AGG | + | chr6_4:21548488-21548507 | None:intergenic | 50.0% | |
| GACAGTGGATCACCAAATGC+TGG | - | chr6_4:21548673-21548692 | Msa0981950:intron | 50.0% | |
| AAGGTCGCCAATTCAGACAC+TGG | + | chr6_4:21548873-21548892 | None:intergenic | 50.0% | |
| CGTGGCGTGGGTCATATTAT+TGG | - | chr6_4:21548910-21548929 | Msa0981950:CDS | 50.0% | |
| ! | TAGTCTTGGAGGCCGTTCAA+TGG | - | chr6_4:21549371-21549390 | Msa0981950:CDS | 50.0% |
| GCGCTGTGGTTGAAGGTTGA+AGG | + | chr6_4:21544843-21544862 | None:intergenic | 55.0% | |
| TCAACCTTCAACCACAGCGC+TGG | - | chr6_4:21544843-21544862 | Msa0981950:three_prime_UTR | 55.0% | |
| CAACCTTCAACCACAGCGCT+GGG | - | chr6_4:21544844-21544863 | Msa0981950:three_prime_UTR | 55.0% | |
| GTGGGAGTAGGAAGAAGTGG+CGG | + | chr6_4:21544915-21544934 | None:intergenic | 55.0% | |
| ! | ATGATGATGCGGTGGTCGGA+GGG | + | chr6_4:21544942-21544961 | None:intergenic | 55.0% |
| TCACCACCAGGCAATGCCAA+TGG | + | chr6_4:21545053-21545072 | None:intergenic | 55.0% | |
| ! | CATTGCCTGGTGGTGAAGTG+AGG | - | chr6_4:21545057-21545076 | Msa0981950:intron | 55.0% |
| CTCTTCCTCACTTCACCACC+AGG | + | chr6_4:21545065-21545084 | None:intergenic | 55.0% | |
| ! | CTGGTGGTGAAGTGAGGAAG+AGG | - | chr6_4:21545063-21545082 | Msa0981950:intron | 55.0% |
| TGAGGAAGAGGAAGAGAGGG+AGG | - | chr6_4:21545075-21545094 | Msa0981950:intron | 55.0% | |
| ! | TGATTTGGCGGCGTTATCGG+AGG | - | chr6_4:21545157-21545176 | Msa0981950:intron | 55.0% |
| GAGATAGCGAGAAGGACGGA+GGG | - | chr6_4:21545200-21545219 | Msa0981950:intron | 55.0% | |
| AGATAGCGAGAAGGACGGAG+GGG | - | chr6_4:21545201-21545220 | Msa0981950:intron | 55.0% | |
| GAGAAGGACGGAGGGGTTAA+AGG | - | chr6_4:21545208-21545227 | Msa0981950:intron | 55.0% | |
| AAGGACGGAGGGGTTAAAGG+AGG | - | chr6_4:21545211-21545230 | Msa0981950:intron | 55.0% | |
| GGAGGGGTTAAAGGAGGAAG+AGG | - | chr6_4:21545217-21545236 | Msa0981950:intron | 55.0% | |
| GAAGTAGGAGGAGGAAGAGG+AGG | - | chr6_4:21545279-21545298 | Msa0981950:intron | 55.0% | |
| !! | ACAACGAGGCGGTATCGACT+TGG | - | chr6_4:21546700-21546719 | Msa0981950:CDS | 55.0% |
| !! | GAAGGTGTCTCATCCGTGAC+TGG | + | chr6_4:21546904-21546923 | None:intergenic | 55.0% |
| !! | TGATGTGGCGCTGACTGTTG+AGG | - | chr6_4:21547296-21547315 | Msa0981950:CDS | 55.0% |
| !! | GATGTGGCGCTGACTGTTGA+GGG | - | chr6_4:21547297-21547316 | Msa0981950:CDS | 55.0% |
| !! | ATGTGGCGCTGACTGTTGAG+GGG | - | chr6_4:21547298-21547317 | Msa0981950:CDS | 55.0% |
| TTTGGGTGGCGCTAGTTGCA+AGG | - | chr6_4:21548105-21548124 | Msa0981950:intron | 55.0% | |
| TCCTCATTGACAGGGGTTCC+AGG | - | chr6_4:21548348-21548367 | Msa0981950:intron | 55.0% | |
| TCCTGGAACCCCTGTCAATG+AGG | + | chr6_4:21548352-21548371 | None:intergenic | 55.0% | |
| GACAGGGGTTCCAGGAATTG+AGG | - | chr6_4:21548356-21548375 | Msa0981950:intron | 55.0% | |
| AAACTGAGTGCATCGTGGCG+TGG | - | chr6_4:21548897-21548916 | Msa0981950:CDS | 55.0% | |
| AACTGAGTGCATCGTGGCGT+GGG | - | chr6_4:21548898-21548917 | Msa0981950:CDS | 55.0% | |
| ! | TGATGATGCGGTGGTCGGAG+GGG | + | chr6_4:21544941-21544960 | None:intergenic | 60.0% |
| ! | GATGATGATGCGGTGGTCGG+AGG | + | chr6_4:21544943-21544962 | None:intergenic | 60.0% |
| TTTGGCGGCGTTATCGGAGG+TGG | - | chr6_4:21545160-21545179 | Msa0981950:intron | 60.0% | |
| ! | GGAGGTGGAGCATCCGTTTG+CGG | - | chr6_4:21545175-21545194 | Msa0981950:intron | 60.0% |
| CTCGCTATCTCCGCCGCAAA+CGG | + | chr6_4:21545191-21545210 | None:intergenic | 60.0% | |
| TTGCGGCGGAGATAGCGAGA+AGG | - | chr6_4:21545192-21545211 | Msa0981950:intron | 60.0% | |
| GGCGGAGATAGCGAGAAGGA+CGG | - | chr6_4:21545196-21545215 | Msa0981950:intron | 60.0% | |
| GGAGATAGCGAGAAGGACGG+AGG | - | chr6_4:21545199-21545218 | Msa0981950:intron | 60.0% | |
| TGGTTGGGCAGTGGGGAAGT+AGG | - | chr6_4:21545264-21545283 | Msa0981950:intron | 60.0% | |
| TTGGGCAGTGGGGAAGTAGG+AGG | - | chr6_4:21545267-21545286 | Msa0981950:intron | 60.0% | |
| GGGGAAGTAGGAGGAGGAAG+AGG | - | chr6_4:21545276-21545295 | Msa0981950:intron | 60.0% | |
| GGCAACAGAAGCAGCAGCAG+GGG | + | chr6_4:21546467-21546486 | None:intergenic | 60.0% | |
| GGGCAACAGAAGCAGCAGCA+GGG | + | chr6_4:21546468-21546487 | None:intergenic | 60.0% | |
| CCCAGGACATTAGGCTGACC+CGG | + | chr6_4:21546868-21546887 | None:intergenic | 60.0% | |
| CCGGGTCAGCCTAATGTCCT+GGG | - | chr6_4:21546865-21546884 | Msa0981950:CDS | 60.0% | |
| CTGGAGACTCTTCTGCTCCC+AGG | + | chr6_4:21546885-21546904 | None:intergenic | 60.0% | |
| GGACCCAGCGCTGTGGTTGA+AGG | + | chr6_4:21544850-21544869 | None:intergenic | 65.0% | |
| AGGTCGGGAGTAGGTGCGGT+GGG | + | chr6_4:21544871-21544890 | None:intergenic | 65.0% | |
| GGTGAGGTCGGGAGTAGGTG+CGG | + | chr6_4:21544875-21544894 | None:intergenic | 65.0% | |
| TCGGAGGGGAGAGTGGGAGT+AGG | + | chr6_4:21544927-21544946 | None:intergenic | 65.0% | |
| ! | GGTGGAGCATCCGTTTGCGG+CGG | - | chr6_4:21545178-21545197 | Msa0981950:intron | 65.0% |
| GGCAGTGGGGAAGTAGGAGG+AGG | - | chr6_4:21545270-21545289 | Msa0981950:intron | 65.0% | |
| CGGGCAACAGAAGCAGCAGC+AGG | + | chr6_4:21546469-21546488 | None:intergenic | 65.0% | |
| ! | TGCTGCTTCTGTTGCCCGCG+AGG | - | chr6_4:21546471-21546490 | Msa0981950:intron | 65.0% |
| TTCTGTTGCCCGCGAGGAGC+AGG | - | chr6_4:21546477-21546496 | Msa0981950:CDS | 65.0% | |
| TCGTTGGTCCTGCTCCTCGC+GGG | + | chr6_4:21546488-21546507 | None:intergenic | 65.0% | |
| GTCGTTGGTCCTGCTCCTCG+CGG | + | chr6_4:21546489-21546508 | None:intergenic | 65.0% | |
| GCCGGGTCAGCCTAATGTCC+TGG | - | chr6_4:21546864-21546883 | Msa0981950:CDS | 65.0% | |
| GAGGTCGGGAGTAGGTGCGG+TGG | + | chr6_4:21544872-21544891 | None:intergenic | 70.0% | |
| TCGGCGGTGAGGTCGGGAGT+AGG | + | chr6_4:21544880-21544899 | None:intergenic | 70.0% | |
| GCGACATCGGCGGTGAGGTC+GGG | + | chr6_4:21544886-21544905 | None:intergenic | 70.0% | |
| CGCGACATCGGCGGTGAGGT+CGG | + | chr6_4:21544887-21544906 | None:intergenic | 70.0% | |
| CGGTGGTCGGAGGGGAGAGT+GGG | + | chr6_4:21544933-21544952 | None:intergenic | 70.0% | |
| TGCGGTGGGACCCAGCGCTG+TGG | + | chr6_4:21544857-21544876 | None:intergenic | 75.0% | |
| GCGACGCGACATCGGCGGTG+AGG | + | chr6_4:21544891-21544910 | None:intergenic | 75.0% | |
| GTGGCGGCGCGACGCGACAT+CGG | + | chr6_4:21544899-21544918 | None:intergenic | 75.0% | |
| GCGGTGGTCGGAGGGGAGAG+TGG | + | chr6_4:21544934-21544953 | None:intergenic | 75.0% | |
| ! | GCGGCGCGACGCGACATCGG+CGG | + | chr6_4:21544896-21544915 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 21544593 | 21549526 | 21544593 | ID=Msa0981950;Name=Msa0981950 |
| chr6_4 | mRNA | 21544593 | 21549526 | 21544593 | ID=Msa0981950-mRNA-1;Parent=Msa0981950;Name=Msa0981950-mRNA-1;_AED=0.10;_eAED=0.10;_QI=66|1|1|1|0.5|0.2|5|401|800 |
| chr6_4 | exon | 21544593 | 21544989 | 21544593 | ID=Msa0981950-mRNA-1:exon:6648;Parent=Msa0981950-mRNA-1 |
| chr6_4 | exon | 21545410 | 21545758 | 21545410 | ID=Msa0981950-mRNA-1:exon:6647;Parent=Msa0981950-mRNA-1 |
| chr6_4 | exon | 21546472 | 21547801 | 21546472 | ID=Msa0981950-mRNA-1:exon:6646;Parent=Msa0981950-mRNA-1 |
| chr6_4 | exon | 21548708 | 21549478 | 21548708 | ID=Msa0981950-mRNA-1:exon:6645;Parent=Msa0981950-mRNA-1 |
| chr6_4 | exon | 21549504 | 21549526 | 21549504 | ID=Msa0981950-mRNA-1:exon:6644;Parent=Msa0981950-mRNA-1 |
| chr6_4 | five_prime_UTR | 21549504 | 21549526 | 21549504 | ID=Msa0981950-mRNA-1:five_prime_utr;Parent=Msa0981950-mRNA-1 |
| chr6_4 | five_prime_UTR | 21549436 | 21549478 | 21549436 | ID=Msa0981950-mRNA-1:five_prime_utr;Parent=Msa0981950-mRNA-1 |
| chr6_4 | CDS | 21548708 | 21549435 | 21548708 | ID=Msa0981950-mRNA-1:cds;Parent=Msa0981950-mRNA-1 |
| chr6_4 | CDS | 21546472 | 21547801 | 21546472 | ID=Msa0981950-mRNA-1:cds;Parent=Msa0981950-mRNA-1 |
| chr6_4 | CDS | 21545414 | 21545758 | 21545414 | ID=Msa0981950-mRNA-1:cds;Parent=Msa0981950-mRNA-1 |
| chr6_4 | three_prime_UTR | 21545410 | 21545413 | 21545410 | ID=Msa0981950-mRNA-1:three_prime_utr;Parent=Msa0981950-mRNA-1 |
| chr6_4 | three_prime_UTR | 21544593 | 21544989 | 21544593 | ID=Msa0981950-mRNA-1:three_prime_utr;Parent=Msa0981950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
