AlfalfaGEDB | Msa0740110

M. sativa cultivar zhongmu-4 / Msa0740110

KEGG: K15376
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006464 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008940 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009144 GO:0009150 GO:0009199 GO:0009205 GO:0009259 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016491 GO:0016661 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0018315 GO:0019538 GO:0019637 GO:0019693 GO:0023052 GO:0030151 GO:0032324 GO:0032870 GO:0034641 GO:0036211 GO:0042040 GO:0042221 GO:0042278 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043545 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046039 GO:0046128 GO:0046483 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051189 GO:0051716 GO:0055086 GO:0055114 GO:0061598 GO:0061599 GO:0065007 GO:0070566 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0072521 GO:0090407 GO:1901068 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657
PFAM: PF03453.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0740110	XP_003617060.1	94.248	678	14	1	1	678	1	653	0.0	1283

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0740110	sp\|Q39054\|CNX1_ARATH	67.204	683	187	5	1	676	16	668	0.0	928

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0740110	G7KHG7	94.248	678	14	1	1	678	1	653	0.0	1283

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0202880	Msa0740110	-0.807032	6.162091e-50	-8.615850e-47
Msa0223410	Msa0740110	0.820730	5.877224e-53	-8.615850e-47
Msa0350870	Msa0740110	-0.842094	3.188522e-58	-8.615850e-47
Msa0443290	Msa0740110	-0.843978	1.004378e-58	-8.615850e-47
Msa0490870	Msa0740110	-0.821294	4.357685e-53	-8.615850e-47
Msa0492870	Msa0740110	-0.805801	1.120345e-49	-8.615850e-47
Msa0492880	Msa0740110	-0.805357	1.387873e-49	-8.615850e-47
Msa0498220	Msa0740110	-0.804787	1.826972e-49	-8.615850e-47
Msa0548280	Msa0740110	0.844332	8.070745e-59	-8.615850e-47
Msa0658570	Msa0740110	-0.817505	3.185471e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0740110	MtrunA17_Chr5g0440331	94.248	678	14	1	1	678	1	653	0.0	1283

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0740110	AT5G20990.1	67.204	683	187	5	1	676	16	668	928
Msa0740110	AT5G20990.2	65.370	514	141	5	170	676	2	485	684
Msa0740110	AT5G20990.3	65.370	514	141	5	170	676	2	485	684

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Find 263 sgRNAs with CRISPR-Local

Find 682 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAACTACAGATTCTTC+TGG	0.408471	5_1:-58923438	Msa0740110:CDS
AAAATCCACAGGTCTTAGGT+TGG	0.605389	5_1:+58923518	None:intergenic
AAACGAACCTTGACGGAAGC+AGG	0.452890	5_1:+58927183	None:intergenic
AAATACATTTGGATCGTCTC+AGG	0.407520	5_1:+58918384	Msa0740100:CDS
AACAGAGGTTGCTACAACTT+TGG	0.341124	5_1:+58921440	None:intergenic
AACATTCTCATAACTTCCGG+AGG	0.668040	5_1:-58924444	Msa0740110:CDS
AACGAACCTTGACGGAAGCA+GGG	0.576942	5_1:+58927184	None:intergenic
AACTTCCGGAGGTGTTTCAA+TGG	0.473185	5_1:-58924433	Msa0740110:CDS
AAGAGCTTCGTGAAGTGAAA+CGG	0.534635	5_1:+58927257	None:intergenic
AAGCAAACTGAAGAACTGAC+AGG	0.607834	5_1:+58924075	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAGTAAAAACGAACCTTGA+CGG	+	chr5_1:58917999-58918018	Msa0740100:CDS	30.0%
ATGTGAAAAGAAATGAAGGA+AGG	+	chr5_1:58918027-58918046	Msa0740100:CDS	30.0%
TAAACTAAATTACACACCTC+CGG	+	chr5_1:58918216-58918235	Msa0740100:CDS	30.0%
TTCTAGTATAAGCACTTATC+TGG	+	chr5_1:58918324-58918343	Msa0740100:CDS	30.0%
ATTAAGCTGTTTATCCAAAC+AGG	-	chr5_1:58918351-58918370	Msa0740110:three_prime_UTR	30.0%
TTAAGCTGTTTATCCAAACA+GGG	-	chr5_1:58918352-58918371	Msa0740110:three_prime_UTR	30.0%
ATATTGGTCAAAACCAATCA+AGG	-	chr5_1:58918497-58918516	Msa0740110:three_prime_UTR	30.0%
TCAAATAAGCCAATCAAAAC+AGG	-	chr5_1:58918771-58918790	Msa0740110:three_prime_UTR	30.0%
CATAAAATTCAGGAGAATTC+GGG	+	chr5_1:58918797-58918816	None:intergenic	30.0%
TAACCGGATAAAAAATCAGA+TGG	+	chr5_1:58919017-58919036	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	58917687	58927507	58917687	ID=Msa0740110;Name=Msa0740110
chr5_1	mRNA	58917687	58927507	58917687	ID=Msa0740110-mRNA-1;Parent=Msa0740110;Name=Msa0740110-mRNA-1;_AED=0.18;_eAED=0.18;_QI=141\|0.92\|0.92\|1\|0.92\|0.85\|14\|1109\|678
chr5_1	exon	58917687	58919017	58917687	ID=Msa0740110-mRNA-1:exon:16887;Parent=Msa0740110-mRNA-1
chr5_1	exon	58920110	58920166	58920110	ID=Msa0740110-mRNA-1:exon:16886;Parent=Msa0740110-mRNA-1
chr5_1	exon	58920791	58920897	58920791	ID=Msa0740110-mRNA-1:exon:16885;Parent=Msa0740110-mRNA-1
chr5_1	exon	58921358	58921515	58921358	ID=Msa0740110-mRNA-1:exon:16884;Parent=Msa0740110-mRNA-1
chr5_1	exon	58923366	58923749	58923366	ID=Msa0740110-mRNA-1:exon:16883;Parent=Msa0740110-mRNA-1
chr5_1	exon	58923825	58923929	58923825	ID=Msa0740110-mRNA-1:exon:16882;Parent=Msa0740110-mRNA-1
chr5_1	exon	58924012	58924190	58924012	ID=Msa0740110-mRNA-1:exon:16881;Parent=Msa0740110-mRNA-1
chr5_1	exon	58924374	58924601	58924374	ID=Msa0740110-mRNA-1:exon:16880;Parent=Msa0740110-mRNA-1
chr5_1	exon	58925505	58925588	58925505	ID=Msa0740110-mRNA-1:exon:16879;Parent=Msa0740110-mRNA-1
chr5_1	exon	58925697	58925798	58925697	ID=Msa0740110-mRNA-1:exon:16878;Parent=Msa0740110-mRNA-1
chr5_1	exon	58926656	58926786	58926656	ID=Msa0740110-mRNA-1:exon:16877;Parent=Msa0740110-mRNA-1
chr5_1	exon	58926976	58927102	58926976	ID=Msa0740110-mRNA-1:exon:16876;Parent=Msa0740110-mRNA-1
chr5_1	exon	58927191	58927385	58927191	ID=Msa0740110-mRNA-1:exon:16875;Parent=Msa0740110-mRNA-1
chr5_1	exon	58927409	58927507	58927409	ID=Msa0740110-mRNA-1:exon:16874;Parent=Msa0740110-mRNA-1
chr5_1	five_prime_UTR	58927409	58927507	58927409	ID=Msa0740110-mRNA-1:five_prime_utr;Parent=Msa0740110-mRNA-1
chr5_1	five_prime_UTR	58927344	58927385	58927344	ID=Msa0740110-mRNA-1:five_prime_utr;Parent=Msa0740110-mRNA-1
chr5_1	CDS	58927191	58927343	58927191	ID=Msa0740110-mRNA-1:cds;Parent=Msa0740110-mRNA-1
chr5_1	CDS	58926976	58927102	58926976	ID=Msa0740110-mRNA-1:cds;Parent=Msa0740110-mRNA-1
chr5_1	CDS	58926656	58926786	58926656	ID=Msa0740110-mRNA-1:cds;Parent=Msa0740110-mRNA-1
chr5_1	CDS	58925697	58925798	58925697	ID=Msa0740110-mRNA-1:cds;Parent=Msa0740110-mRNA-1
chr5_1	CDS	58925505	58925588	58925505	ID=Msa0740110-mRNA-1:cds;Parent=Msa0740110-mRNA-1
chr5_1	CDS	58924374	58924601	58924374	ID=Msa0740110-mRNA-1:cds;Parent=Msa0740110-mRNA-1
chr5_1	CDS	58924012	58924190	58924012	ID=Msa0740110-mRNA-1:cds;Parent=Msa0740110-mRNA-1
chr5_1	CDS	58923825	58923929	58923825	ID=Msa0740110-mRNA-1:cds;Parent=Msa0740110-mRNA-1
chr5_1	CDS	58923366	58923749	58923366	ID=Msa0740110-mRNA-1:cds;Parent=Msa0740110-mRNA-1
chr5_1	CDS	58921358	58921515	58921358	ID=Msa0740110-mRNA-1:cds;Parent=Msa0740110-mRNA-1
chr5_1	CDS	58920791	58920897	58920791	ID=Msa0740110-mRNA-1:cds;Parent=Msa0740110-mRNA-1
chr5_1	CDS	58920110	58920166	58920110	ID=Msa0740110-mRNA-1:cds;Parent=Msa0740110-mRNA-1
chr5_1	CDS	58918796	58919017	58918796	ID=Msa0740110-mRNA-1:cds;Parent=Msa0740110-mRNA-1
chr5_1	three_prime_UTR	58917687	58918795	58917687	ID=Msa0740110-mRNA-1:three_prime_utr;Parent=Msa0740110-mRNA-1

Gene Sequence

>Msa0740110

ATGATCTCAGTCACTGACGCTCTCGAAACGGTTCTTAACGCCGCTAAACGTCTTCCACCAATTTCCGTTTCACTTCACGAAGCTCTTGGTAAAGTCTTAGCTCAAGACGTTCACGCCGTTGATCCTTTACCTCCTTACCCTGCTTCCGTCAAGGACGGTTATGCGGTTGTGGCTGGAGACGGGCCTGGTGAATACCCGGTGATTGCGGAATCAAGAGCTGGTGATGATGCTCTTGGTGTTACTGTGACCCCTGGAACTGTTGCTTATGTAACAACCGGAGGACCGATACCTGATGGTGCTGATGCAGTTGTTCAGGTTGAAGATACTGAAAAAGTCAACAATGCTTCTGATGAGTTTGACCGGGTCAGAATATTGGTCAAAACCAATCAAGGCAATGATATACGCCCAGTGGGAGTTGATATTGAGAAAGATGCAGTGGTCTTAACATCTGGAGAAATATTAGGTGCTTCCGAGATTGGCTTGCTCGCTGCAGTTGGTGCGACGACGGTTAAGGTGTACCCTACTCCAACTATTGCTGTTCTTTCTACCGGCGATGAGCTTGTGGAGCCATCTACTGGGCATCTGAGTCGTGGTCAGATTAGGGACTCTAACCGTGCCATGCTTCTGGCAGCCGCAGTACAGCATCACTGCAAAGTTGTGGACCTTGGTATCGCTAAGGATGATGAAGAATCCCAAGGAAGGATCTTGGATAAGGCTTTTGCTTCTGGAATCAACATTCTCATAACTTCCGGAGGTGTTTCAATGGGAGACAAAGATTTTATTAGGCCTTTGCTTGAAAAGCGAGGAAAATTACATTTTGATAAGGTGTCTATTAAACCAGGCAAGCCGTTTACTTTTGCAGAGATTGACTCTCAATCAACAGAAAGTAAAATTCTAGCTTTTGGACTACCTGGAAATCCTGTCAGTTCTTCAGTTTGCTTTCATCTCTTTGTGGTCCCTGCTATACGCCAGCTTGCAGGGTGGACAAATCCTCATCATCTGAGAGTACAAGCTCGGCTTCAACAACCCATAAAGACAGATCAATTTAGACCAGAATATCATCGTGCCACTGTTATATGGACTGACAATGATGGAACAGGCAGCCCTGGAGGCATAATTGCTATGCCTATATTTGACCGGGTTTCTCTAATGAATGAGCTTTACTTGCCGCCAATGAATTTCAGTTTTGTCGCCGAGAGCACTGGTCATCAGAGGAGCAGTCGACTACTTAGTATGAAGTCAGCTAATGCCTTTTTGGAGTTTCCAGCAACAGGCAGTGTTGTATCTGCTGGGACTCCTGTGGCCGCTATCATAATTTCCAACCTAAGACCTGTGGATTTTGCCAAGAATCATATATCATCAGACTCAAACTTTGCTCTGCCAGGGATTAAATCAGATAAAATAACTACAGATTCTTCTGGCGGTGCTGACCTCAGAGTGGCTATTCTTACAGTAAGTGATACAGTTGCTGCGGGGGCTGGACCAGATCGAAGTGGTCCCAGGGCAGTTTCTGTTATTAATTCTTCTTCAGAAAGGCTAGGAGGTGCCAAAGTTGTAGCAACCTCTGTTGTTCCAGATAATGTGGCAAAAATTCAGGACATTCTAAGAACATGGAGCGATAATGAACAAATGGATCTTATAATTACTCTTGGTGGTACTGGCTTTACCTCGCGAGATGTAACACCGGAAGCTACGAAAGAGTTGATTGAAAAAGAAACACCTGGTCTTTTGTATGTAATGATGCAAGAGAGTTTAAAGGTGACTCCATCTGCAATGCTTTCACGATCTGCAGCTGGAATCAGAGGATCAACCTTGATCATTAACATGCCGGGAAACCCGAATGCTGTTGCTGAATGTATGGAAGCCTTATTGCCAGCACTTAAGCATGGTCTAAAGCAGCTCAGGGGGGATAAGAGAGAAAAACATCCTCGGCACATTCCTCACGCTGAAGCAATTCCTACAGATGTTTGGGAACGGAGTTATATGTCAGCCACTGGTGCTGGGGGCTCTGAGGTCTCTTGTTCCTGTTGTAAGTAA

Protein sequence

>Msa0740110

MISVTDALETVLNAAKRLPPISVSLHEALGKVLAQDVHAVDPLPPYPASVKDGYAVVAGDGPGEYPVIAESRAGDDALGVTVTPGTVAYVTTGGPIPDGADAVVQVEDTEKVNNASDEFDRVRILVKTNQGNDIRPVGVDIEKDAVVLTSGEILGASEIGLLAAVGATTVKVYPTPTIAVLSTGDELVEPSTGHLSRGQIRDSNRAMLLAAAVQHHCKVVDLGIAKDDEESQGRILDKAFASGINILITSGGVSMGDKDFIRPLLEKRGKLHFDKVSIKPGKPFTFAEIDSQSTESKILAFGLPGNPVSSSVCFHLFVVPAIRQLAGWTNPHHLRVQARLQQPIKTDQFRPEYHRATVIWTDNDGTGSPGGIIAMPIFDRVSLMNELYLPPMNFSFVAESTGHQRSSRLLSMKSANAFLEFPATGSVVSAGTPVAAIIISNLRPVDFAKNHISSDSNFALPGIKSDKITTDSSGGADLRVAILTVSDTVAAGAGPDRSGPRAVSVINSSSERLGGAKVVATSVVPDNVAKIQDILRTWSDNEQMDLIITLGGTGFTSRDVTPEATKELIEKETPGLLYVMMQESLKVTPSAMLSRSAAGIRGSTLIINMPGNPNAVAECMEALLPALKHGLKQLRGDKREKHPRHIPHAEAIPTDVWERSYMSATGAGGSEVSCSCCK*