AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0761010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0761010 MtrunA17_Chr5g0411231 95.833 120 5 0 1 120 1 120 8.05e-81 233
Msa0761010 MtrunA17_Chr5g0411241 85.000 120 18 0 1 120 1 120 5.92e-70 205
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 46 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATTAATTTGTACTAAATT+TGG 0.155825 5_2:-18006752 Msa0761010:three_prime_UTR
TCACTTCTCTAGGGACAATT+TGG 0.245955 5_2:+18006813 None:intergenic
CTTGCTCTTGAGTGCAGCTT+TGG 0.250449 5_2:+18007834 None:intergenic
TTCCCTCTATCATGAATAAT+TGG 0.255625 5_2:+18007968 None:intergenic
TCACTGCTACTCTCAATTTC+AGG 0.257468 5_2:+18006975 None:intergenic
CTCATATCATTGTGAGAATA+TGG 0.263715 5_2:-18007861 Msa0761010:exon
TTTAAGAATTAAGAAATTAC+TGG 0.290187 5_2:-18006515 Msa0761010:three_prime_UTR
TTGCTCTTGAGTGCAGCTTT+GGG 0.361214 5_2:+18007835 None:intergenic
CCCTTGCCTGAGTCTGCATC+AGG 0.380799 5_2:+18006885 None:intergenic
TGTGTGATCGGCTATGAATT+TGG 0.386297 5_2:-18006713 Msa0761010:three_prime_UTR
GTTTGTAATTAGTATGTGTT+TGG 0.396742 5_2:-18006677 Msa0761010:three_prime_UTR
GGTCCAATTATTCATGATAG+AGG 0.415239 5_2:-18007971 Msa0761010:five_prime_UTR
CCTTAGTGAATCACTTCTCT+AGG 0.478513 5_2:+18006803 None:intergenic
TACTAAATTTGGTTTATCAT+CGG 0.484979 5_2:-18006741 Msa0761010:three_prime_UTR
AGGTTCAATTATTGAGAAAG+AGG 0.485478 5_2:-18008014 Msa0761010:five_prime_UTR
TGTGTTATAACTAGGACTAC+TGG 0.487878 5_2:-18007642 Msa0761010:CDS
GGCAATGTGTTGTGCAAGAC+AGG 0.497539 5_2:-18007678 Msa0761010:CDS
GAGGTAGAGCCTTGAAAAGT+CGG 0.524080 5_2:+18007942 None:intergenic
CCTAGAGAAGTGATTCACTA+AGG 0.524929 5_2:-18006803 Msa0761010:three_prime_UTR
AATGTATCAACTAGTGAATG+AGG 0.527069 5_2:+18007923 None:intergenic
TCCAAGCTAATAAAATATCA+AGG 0.533155 5_2:-18006776 Msa0761010:three_prime_UTR
AGGACTACTGGACCTGATGC+TGG 0.536873 5_2:-18007630 Msa0761010:CDS
GAAGGCCCTGATGCAGACTC+AGG 0.558417 5_2:-18006891 Msa0761010:CDS
CAAAGCTGCACTCAAGAGCA+AGG 0.561178 5_2:-18007833 Msa0761010:CDS
CCCTGATGCAGACTCAGGCA+AGG 0.569002 5_2:-18006886 Msa0761010:CDS
TCATCGGTATTATGTGTGAT+CGG 0.569387 5_2:-18006725 Msa0761010:three_prime_UTR
CCTTGCCTGAGTCTGCATCA+GGG 0.572670 5_2:+18006886 None:intergenic
GTCCAATTATTCATGATAGA+GGG 0.575626 5_2:-18007970 Msa0761010:five_prime_UTR
CTAGAGAAGTGATTCACTAA+GGG 0.578373 5_2:-18006802 Msa0761010:three_prime_UTR
GTTGGACATGTGTTATAACT+AGG 0.581816 5_2:-18007650 Msa0761010:CDS
TCTGCAAGTGTGGTGAAGGA+TGG 0.591787 5_2:-18006935 Msa0761010:CDS
ACATTCTGCAAGTGTGGTGA+AGG 0.593456 5_2:-18006939 Msa0761010:CDS
ACTCTCAATTTCAGGTGTCA+CGG 0.597381 5_2:+18006983 None:intergenic
TGTGCAAGACAGGTAAAGGT+TGG 0.598871 5_2:-18007668 Msa0761010:CDS
CTTAGTGAATCACTTCTCTA+GGG 0.599847 5_2:+18006804 None:intergenic
TACTAATTACAAACATCATG+TGG 0.601550 5_2:+18006686 None:intergenic
GCTGTTTATGACTTTAAACA+TGG 0.619952 5_2:-18007992 Msa0761010:five_prime_UTR
ATTGAGAGTAGCAGTGACAA+TGG 0.620823 5_2:-18006969 Msa0761010:CDS
CCTGATGCAGACTCAGGCAA+GGG 0.625232 5_2:-18006885 Msa0761010:CDS
GTGTTGTGCAAGACAGGTAA+AGG 0.626364 5_2:-18007672 Msa0761010:CDS
TATAAGAACAGTCTGAAGCA+TGG 0.629013 5_2:-18006560 Msa0761010:three_prime_UTR
TCATATGCATGCAGTGATGG+TGG 0.630166 5_2:-18007008 Msa0761010:intron
GTGTGTGACATACAGTGTGC+AGG 0.646525 5_2:+18007575 None:intergenic
AAAGCTGCACTCAAGAGCAA+GGG 0.647133 5_2:-18007832 Msa0761010:intron
ACAACACATTGCCCAAACCC+AGG 0.649057 5_2:+18007688 None:intergenic
AGTGAAACATTCTGCAAGTG+TGG 0.671634 5_2:-18006945 Msa0761010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGAAATATAATTCATTTT+TGG - chr5_2:18007446-18007465 Msa0761010:intron 10.0%
!!! AAAGAAATATAATTCATTTT+TGG - chr5_2:18007446-18007465 Msa0761010:intron 10.0%
!!! TGATTAATTTGTACTAAATT+TGG - chr5_2:18007768-18007787 Msa0761010:intron 15.0%
!! AAAAAAAACTAATACTAACA+AGG + chr5_2:18007928-18007947 None:intergenic 15.0%
!! TTTAAGAATTAAGAAATTAC+TGG - chr5_2:18008005-18008024 Msa0761010:five_prime_UTR 15.0%
!!! TGATTAATTTGTACTAAATT+TGG - chr5_2:18007768-18007787 Msa0761010:intron 15.0%
!! AAAAAAAACTAATACTAACA+AGG + chr5_2:18007928-18007947 None:intergenic 15.0%
!! TTTAAGAATTAAGAAATTAC+TGG - chr5_2:18008005-18008024 Msa0761010:five_prime_UTR 15.0%
!! GATTTATTTATGCATGAAAA+TGG + chr5_2:18006755-18006774 None:intergenic 20.0%
!! GTAAAATTAAAATAGGCAAA+AGG + chr5_2:18006975-18006994 None:intergenic 20.0%
!! GATGGTAGTAAAATTAAAAT+AGG + chr5_2:18006982-18007001 None:intergenic 20.0%
!!! TTTTTCAAAATCGAATGAAT+TGG - chr5_2:18007049-18007068 Msa0761010:intron 20.0%
!!! TTTCATTTTTTAGATTGAAC+TGG - chr5_2:18007138-18007157 Msa0761010:intron 20.0%
!!! TTCATTTTTTAGATTGAACT+GGG - chr5_2:18007139-18007158 Msa0761010:intron 20.0%
!! ATTAACTCTTGAGATAAAAT+TGG - chr5_2:18007376-18007395 Msa0761010:intron 20.0%
!!! TACTAAATTTGGTTTATCAT+CGG - chr5_2:18007779-18007798 Msa0761010:intron 20.0%
!! GATTTATTTATGCATGAAAA+TGG + chr5_2:18006755-18006774 None:intergenic 20.0%
!! GTAAAATTAAAATAGGCAAA+AGG + chr5_2:18006975-18006994 None:intergenic 20.0%
!! GATGGTAGTAAAATTAAAAT+AGG + chr5_2:18006982-18007001 None:intergenic 20.0%
!!! TTTTTCAAAATCGAATGAAT+TGG - chr5_2:18007049-18007068 Msa0761010:intron 20.0%
!!! TTTCATTTTTTAGATTGAAC+TGG - chr5_2:18007138-18007157 Msa0761010:intron 20.0%
!!! TTCATTTTTTAGATTGAACT+GGG - chr5_2:18007139-18007158 Msa0761010:intron 20.0%
!! ATTAACTCTTGAGATAAAAT+TGG - chr5_2:18007376-18007395 Msa0761010:intron 20.0%
!!! TACTAAATTTGGTTTATCAT+CGG - chr5_2:18007779-18007798 Msa0761010:intron 20.0%
! TTTGATCAAAATCATTTCGA+TGG + chr5_2:18007000-18007019 None:intergenic 25.0%
! AATGAAACTGCAATGTAATA+AGG + chr5_2:18007125-18007144 None:intergenic 25.0%
! ATCTGATTCAACTATTGTTA+CGG - chr5_2:18007246-18007265 Msa0761010:intron 25.0%
! AAATGAACTCTGAATCAAAT+CGG + chr5_2:18007283-18007302 None:intergenic 25.0%
! TCCAAGCTAATAAAATATCA+AGG - chr5_2:18007744-18007763 Msa0761010:intron 25.0%
!! ACCTTGATATTTTATTAGCT+TGG + chr5_2:18007748-18007767 None:intergenic 25.0%
! TACTAATTACAAACATCATG+TGG + chr5_2:18007837-18007856 None:intergenic 25.0%
! GTTTGTAATTAGTATGTGTT+TGG - chr5_2:18007843-18007862 Msa0761010:CDS 25.0%
! TTTGATCAAAATCATTTCGA+TGG + chr5_2:18007000-18007019 None:intergenic 25.0%
! AATGAAACTGCAATGTAATA+AGG + chr5_2:18007125-18007144 None:intergenic 25.0%
! ATCTGATTCAACTATTGTTA+CGG - chr5_2:18007246-18007265 Msa0761010:intron 25.0%
! AAATGAACTCTGAATCAAAT+CGG + chr5_2:18007283-18007302 None:intergenic 25.0%
! TCCAAGCTAATAAAATATCA+AGG - chr5_2:18007744-18007763 Msa0761010:intron 25.0%
!! ACCTTGATATTTTATTAGCT+TGG + chr5_2:18007748-18007767 None:intergenic 25.0%
! TACTAATTACAAACATCATG+TGG + chr5_2:18007837-18007856 None:intergenic 25.0%
! GTTTGTAATTAGTATGTGTT+TGG - chr5_2:18007843-18007862 Msa0761010:CDS 25.0%
AGGTTCAATTATTGAGAAAG+AGG - chr5_2:18006506-18006525 Msa0761010:three_prime_UTR 30.0%
GCTGTTTATGACTTTAAACA+TGG - chr5_2:18006528-18006547 Msa0761010:three_prime_UTR 30.0%
GTCCAATTATTCATGATAGA+GGG - chr5_2:18006550-18006569 Msa0761010:three_prime_UTR 30.0%
TTCCCTCTATCATGAATAAT+TGG + chr5_2:18006555-18006574 None:intergenic 30.0%
AATGTATCAACTAGTGAATG+AGG + chr5_2:18006600-18006619 None:intergenic 30.0%
CTCATATCATTGTGAGAATA+TGG - chr5_2:18006659-18006678 Msa0761010:three_prime_UTR 30.0%
! AAATGGAACATGAAGAGTAT+TGG + chr5_2:18006738-18006757 None:intergenic 30.0%
ATAGTTCAAGACAAAAACTC+AGG - chr5_2:18006809-18006828 Msa0761010:three_prime_UTR 30.0%
! GGCAAAGTTTTTGTTAAATG+CGG - chr5_2:18006911-18006930 Msa0761010:CDS 30.0%
TCAAAATCGAATGAATTGGT+TGG - chr5_2:18007053-18007072 Msa0761010:intron 30.0%
ACTTTGAATCAGTTTCATGT+CGG - chr5_2:18007352-18007371 Msa0761010:intron 30.0%
AGATTTGTGGCAAATTTGAA+TGG + chr5_2:18007414-18007433 None:intergenic 30.0%
TTCAAATTTGCCACAAATCT+AGG - chr5_2:18007414-18007433 Msa0761010:intron 30.0%
TAAATGTAAGCCTAGATTTG+TGG + chr5_2:18007427-18007446 None:intergenic 30.0%
ATCTAGCAGTGCAATATATA+TGG + chr5_2:18007482-18007501 None:intergenic 30.0%
!! GAAATTTTAAGAGACAACAG+AGG + chr5_2:18007895-18007914 None:intergenic 30.0%
AGGTTCAATTATTGAGAAAG+AGG - chr5_2:18006506-18006525 Msa0761010:three_prime_UTR 30.0%
GCTGTTTATGACTTTAAACA+TGG - chr5_2:18006528-18006547 Msa0761010:three_prime_UTR 30.0%
GTCCAATTATTCATGATAGA+GGG - chr5_2:18006550-18006569 Msa0761010:three_prime_UTR 30.0%
TTCCCTCTATCATGAATAAT+TGG + chr5_2:18006555-18006574 None:intergenic 30.0%
AATGTATCAACTAGTGAATG+AGG + chr5_2:18006600-18006619 None:intergenic 30.0%
CTCATATCATTGTGAGAATA+TGG - chr5_2:18006659-18006678 Msa0761010:three_prime_UTR 30.0%
! AAATGGAACATGAAGAGTAT+TGG + chr5_2:18006738-18006757 None:intergenic 30.0%
ATAGTTCAAGACAAAAACTC+AGG - chr5_2:18006809-18006828 Msa0761010:three_prime_UTR 30.0%
! GGCAAAGTTTTTGTTAAATG+CGG - chr5_2:18006911-18006930 Msa0761010:CDS 30.0%
TCAAAATCGAATGAATTGGT+TGG - chr5_2:18007053-18007072 Msa0761010:intron 30.0%
ACTTTGAATCAGTTTCATGT+CGG - chr5_2:18007352-18007371 Msa0761010:intron 30.0%
AGATTTGTGGCAAATTTGAA+TGG + chr5_2:18007414-18007433 None:intergenic 30.0%
TTCAAATTTGCCACAAATCT+AGG - chr5_2:18007414-18007433 Msa0761010:intron 30.0%
TAAATGTAAGCCTAGATTTG+TGG + chr5_2:18007427-18007446 None:intergenic 30.0%
ATCTAGCAGTGCAATATATA+TGG + chr5_2:18007482-18007501 None:intergenic 30.0%
!! GAAATTTTAAGAGACAACAG+AGG + chr5_2:18007895-18007914 None:intergenic 30.0%
!! GCAGCAGTATTTTTCAATCT+AGG - chr5_2:18006486-18006505 Msa0761010:three_prime_UTR 35.0%
GGTCCAATTATTCATGATAG+AGG - chr5_2:18006549-18006568 Msa0761010:three_prime_UTR 35.0%
! TAAACCAATAAGCTTTGTGC+AGG - chr5_2:18006780-18006799 Msa0761010:three_prime_UTR 35.0%
GTTGGACATGTGTTATAACT+AGG - chr5_2:18006870-18006889 Msa0761010:CDS 35.0%
TGTGTTATAACTAGGACTAC+TGG - chr5_2:18006878-18006897 Msa0761010:CDS 35.0%
! AATGAATTGGTTGGTTCAAC+TGG - chr5_2:18007062-18007081 Msa0761010:intron 35.0%
!! GATGGAGTTGTTCCATTTTT+AGG - chr5_2:18007603-18007622 Msa0761010:CDS 35.0%
!!! TGTTCCATTTTTAGGACTGA+AGG - chr5_2:18007611-18007630 Msa0761010:CDS 35.0%
CTTAGTGAATCACTTCTCTA+GGG + chr5_2:18007719-18007738 None:intergenic 35.0%
CTAGAGAAGTGATTCACTAA+GGG - chr5_2:18007718-18007737 Msa0761010:CDS 35.0%
TCATCGGTATTATGTGTGAT+CGG - chr5_2:18007795-18007814 Msa0761010:intron 35.0%
! TATAAGAACAGTCTGAAGCA+TGG - chr5_2:18007960-18007979 Msa0761010:five_prime_UTR 35.0%
!! GCAGCAGTATTTTTCAATCT+AGG - chr5_2:18006486-18006505 Msa0761010:three_prime_UTR 35.0%
GGTCCAATTATTCATGATAG+AGG - chr5_2:18006549-18006568 Msa0761010:three_prime_UTR 35.0%
! TAAACCAATAAGCTTTGTGC+AGG - chr5_2:18006780-18006799 Msa0761010:three_prime_UTR 35.0%
GTTGGACATGTGTTATAACT+AGG - chr5_2:18006870-18006889 Msa0761010:CDS 35.0%
TGTGTTATAACTAGGACTAC+TGG - chr5_2:18006878-18006897 Msa0761010:CDS 35.0%
! AATGAATTGGTTGGTTCAAC+TGG - chr5_2:18007062-18007081 Msa0761010:intron 35.0%
!! GATGGAGTTGTTCCATTTTT+AGG - chr5_2:18007603-18007622 Msa0761010:CDS 35.0%
!!! TGTTCCATTTTTAGGACTGA+AGG - chr5_2:18007611-18007630 Msa0761010:CDS 35.0%
CTTAGTGAATCACTTCTCTA+GGG + chr5_2:18007719-18007738 None:intergenic 35.0%
CTAGAGAAGTGATTCACTAA+GGG - chr5_2:18007718-18007737 Msa0761010:CDS 35.0%
TCATCGGTATTATGTGTGAT+CGG - chr5_2:18007795-18007814 Msa0761010:intron 35.0%
! TATAAGAACAGTCTGAAGCA+TGG - chr5_2:18007960-18007979 Msa0761010:five_prime_UTR 35.0%
CTTTCCTGCACAAAGCTTAT+TGG + chr5_2:18006787-18006806 None:intergenic 40.0%
ACAAAAACTTTGCCAGCATC+AGG + chr5_2:18006905-18006924 None:intergenic 40.0%
ATCACTGCATGCATATGAGT+TGG + chr5_2:18007510-18007529 None:intergenic 40.0%
AACTCATATGCATGCAGTGA+TGG - chr5_2:18007509-18007528 Msa0761010:intron 40.0%
! ACTCTCAATTTCAGGTGTCA+CGG + chr5_2:18007540-18007559 None:intergenic 40.0%
TCACTGCTACTCTCAATTTC+AGG + chr5_2:18007548-18007567 None:intergenic 40.0%
ATTGAGAGTAGCAGTGACAA+TGG - chr5_2:18007551-18007570 Msa0761010:intron 40.0%
AGTGAAACATTCTGCAAGTG+TGG - chr5_2:18007575-18007594 Msa0761010:intron 40.0%
! TCACTTCTCTAGGGACAATT+TGG + chr5_2:18007710-18007729 None:intergenic 40.0%
CCTTAGTGAATCACTTCTCT+AGG + chr5_2:18007720-18007739 None:intergenic 40.0%
CCTAGAGAAGTGATTCACTA+AGG - chr5_2:18007717-18007736 Msa0761010:CDS 40.0%
TGTGTGATCGGCTATGAATT+TGG - chr5_2:18007807-18007826 Msa0761010:intron 40.0%
CTTTCCTGCACAAAGCTTAT+TGG + chr5_2:18006787-18006806 None:intergenic 40.0%
ACAAAAACTTTGCCAGCATC+AGG + chr5_2:18006905-18006924 None:intergenic 40.0%
ATCACTGCATGCATATGAGT+TGG + chr5_2:18007510-18007529 None:intergenic 40.0%
AACTCATATGCATGCAGTGA+TGG - chr5_2:18007509-18007528 Msa0761010:intron 40.0%
! ACTCTCAATTTCAGGTGTCA+CGG + chr5_2:18007540-18007559 None:intergenic 40.0%
TCACTGCTACTCTCAATTTC+AGG + chr5_2:18007548-18007567 None:intergenic 40.0%
ATTGAGAGTAGCAGTGACAA+TGG - chr5_2:18007551-18007570 Msa0761010:intron 40.0%
AGTGAAACATTCTGCAAGTG+TGG - chr5_2:18007575-18007594 Msa0761010:intron 40.0%
! TCACTTCTCTAGGGACAATT+TGG + chr5_2:18007710-18007729 None:intergenic 40.0%
CCTTAGTGAATCACTTCTCT+AGG + chr5_2:18007720-18007739 None:intergenic 40.0%
CCTAGAGAAGTGATTCACTA+AGG - chr5_2:18007717-18007736 Msa0761010:CDS 40.0%
TGTGTGATCGGCTATGAATT+TGG - chr5_2:18007807-18007826 Msa0761010:intron 40.0%
! AGGGAAGTTCCGACTTTTCA+AGG - chr5_2:18006569-18006588 Msa0761010:three_prime_UTR 45.0%
GAGGTAGAGCCTTGAAAAGT+CGG + chr5_2:18006581-18006600 None:intergenic 45.0%
TTGCTCTTGAGTGCAGCTTT+GGG + chr5_2:18006688-18006707 None:intergenic 45.0%
AAAGCTGCACTCAAGAGCAA+GGG - chr5_2:18006688-18006707 Msa0761010:three_prime_UTR 45.0%
TCAAGACAAAAACTCAGGCC+TGG - chr5_2:18006814-18006833 Msa0761010:three_prime_UTR 45.0%
CAAGACAAAAACTCAGGCCT+GGG - chr5_2:18006815-18006834 Msa0761010:three_prime_UTR 45.0%
AAAAACTCAGGCCTGGGTTT+GGG - chr5_2:18006821-18006840 Msa0761010:exon 45.0%
GTGTTGTGCAAGACAGGTAA+AGG - chr5_2:18006848-18006867 Msa0761010:CDS 45.0%
TGTGCAAGACAGGTAAAGGT+TGG - chr5_2:18006852-18006871 Msa0761010:CDS 45.0%
TCATATGCATGCAGTGATGG+TGG - chr5_2:18007512-18007531 Msa0761010:intron 45.0%
ACATTCTGCAAGTGTGGTGA+AGG - chr5_2:18007581-18007600 Msa0761010:intron 45.0%
AGGGCCTTCAGTCCTAAAAA+TGG + chr5_2:18007618-18007637 None:intergenic 45.0%
! AGGGAAGTTCCGACTTTTCA+AGG - chr5_2:18006569-18006588 Msa0761010:three_prime_UTR 45.0%
GAGGTAGAGCCTTGAAAAGT+CGG + chr5_2:18006581-18006600 None:intergenic 45.0%
TTGCTCTTGAGTGCAGCTTT+GGG + chr5_2:18006688-18006707 None:intergenic 45.0%
AAAGCTGCACTCAAGAGCAA+GGG - chr5_2:18006688-18006707 Msa0761010:three_prime_UTR 45.0%
TCAAGACAAAAACTCAGGCC+TGG - chr5_2:18006814-18006833 Msa0761010:three_prime_UTR 45.0%
CAAGACAAAAACTCAGGCCT+GGG - chr5_2:18006815-18006834 Msa0761010:three_prime_UTR 45.0%
AAAAACTCAGGCCTGGGTTT+GGG - chr5_2:18006821-18006840 Msa0761010:exon 45.0%
GTGTTGTGCAAGACAGGTAA+AGG - chr5_2:18006848-18006867 Msa0761010:CDS 45.0%
TGTGCAAGACAGGTAAAGGT+TGG - chr5_2:18006852-18006871 Msa0761010:CDS 45.0%
TCATATGCATGCAGTGATGG+TGG - chr5_2:18007512-18007531 Msa0761010:intron 45.0%
ACATTCTGCAAGTGTGGTGA+AGG - chr5_2:18007581-18007600 Msa0761010:intron 45.0%
AGGGCCTTCAGTCCTAAAAA+TGG + chr5_2:18007618-18007637 None:intergenic 45.0%
!!! ATTTTTAATCTTAAATTTAT+CGG + chr5_2:18007315-18007334 None:intergenic 5.0%
!!! ATTTTTAATCTTAAATTTAT+CGG + chr5_2:18007315-18007334 None:intergenic 5.0%
CTTGCTCTTGAGTGCAGCTT+TGG + chr5_2:18006689-18006708 None:intergenic 50.0%
CAAAGCTGCACTCAAGAGCA+AGG - chr5_2:18006687-18006706 Msa0761010:three_prime_UTR 50.0%
CAAAAACTCAGGCCTGGGTT+TGG - chr5_2:18006820-18006839 Msa0761010:exon 50.0%
ACAACACATTGCCCAAACCC+AGG + chr5_2:18006835-18006854 None:intergenic 50.0%
GGCAATGTGTTGTGCAAGAC+AGG - chr5_2:18006842-18006861 Msa0761010:CDS 50.0%
GTGTGTGACATACAGTGTGC+AGG + chr5_2:18006948-18006967 None:intergenic 50.0%
TCTGCAAGTGTGGTGAAGGA+TGG - chr5_2:18007585-18007604 Msa0761010:intron 50.0%
CTTGCTCTTGAGTGCAGCTT+TGG + chr5_2:18006689-18006708 None:intergenic 50.0%
CAAAGCTGCACTCAAGAGCA+AGG - chr5_2:18006687-18006706 Msa0761010:three_prime_UTR 50.0%
CAAAAACTCAGGCCTGGGTT+TGG - chr5_2:18006820-18006839 Msa0761010:exon 50.0%
ACAACACATTGCCCAAACCC+AGG + chr5_2:18006835-18006854 None:intergenic 50.0%
GGCAATGTGTTGTGCAAGAC+AGG - chr5_2:18006842-18006861 Msa0761010:CDS 50.0%
GTGTGTGACATACAGTGTGC+AGG + chr5_2:18006948-18006967 None:intergenic 50.0%
TCTGCAAGTGTGGTGAAGGA+TGG - chr5_2:18007585-18007604 Msa0761010:intron 50.0%
AGGACTACTGGACCTGATGC+TGG - chr5_2:18006890-18006909 Msa0761010:CDS 55.0%
CCTTGCCTGAGTCTGCATCA+GGG + chr5_2:18007637-18007656 None:intergenic 55.0%
CCTGATGCAGACTCAGGCAA+GGG - chr5_2:18007635-18007654 Msa0761010:CDS 55.0%
AGGACTACTGGACCTGATGC+TGG - chr5_2:18006890-18006909 Msa0761010:CDS 55.0%
CCTTGCCTGAGTCTGCATCA+GGG + chr5_2:18007637-18007656 None:intergenic 55.0%
CCTGATGCAGACTCAGGCAA+GGG - chr5_2:18007635-18007654 Msa0761010:CDS 55.0%
GAAGGCCCTGATGCAGACTC+AGG - chr5_2:18007629-18007648 Msa0761010:CDS 60.0%
CCCTGATGCAGACTCAGGCA+AGG - chr5_2:18007634-18007653 Msa0761010:CDS 60.0%
CCCTTGCCTGAGTCTGCATC+AGG + chr5_2:18007638-18007657 None:intergenic 60.0%
GAAGGCCCTGATGCAGACTC+AGG - chr5_2:18007629-18007648 Msa0761010:CDS 60.0%
CCCTGATGCAGACTCAGGCA+AGG - chr5_2:18007634-18007653 Msa0761010:CDS 60.0%
CCCTTGCCTGAGTCTGCATC+AGG + chr5_2:18007638-18007657 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 18006483 18008059 18006483 ID=Msa0761010;Name=Msa0761010
chr5_2 mRNA 18006483 18008059 18006483 ID=Msa0761010-mRNA-1;Parent=Msa0761010;Name=Msa0761010-mRNA-1;_AED=0.14;_eAED=0.14;_QI=195|1|1|1|1|1|3|356|120
chr5_2 exon 18006483 18007016 18006483 ID=Msa0761010-mRNA-1:exon:7834;Parent=Msa0761010-mRNA-1
chr5_2 exon 18007588 18007740 18007588 ID=Msa0761010-mRNA-1:exon:7833;Parent=Msa0761010-mRNA-1
chr5_2 exon 18007833 18008059 18007833 ID=Msa0761010-mRNA-1:exon:7832;Parent=Msa0761010-mRNA-1
chr5_2 five_prime_UTR 18007865 18008059 18007865 ID=Msa0761010-mRNA-1:five_prime_utr;Parent=Msa0761010-mRNA-1
chr5_2 CDS 18007833 18007864 18007833 ID=Msa0761010-mRNA-1:cds;Parent=Msa0761010-mRNA-1
chr5_2 CDS 18007588 18007740 18007588 ID=Msa0761010-mRNA-1:cds;Parent=Msa0761010-mRNA-1
chr5_2 CDS 18006839 18007016 18006839 ID=Msa0761010-mRNA-1:cds;Parent=Msa0761010-mRNA-1
chr5_2 three_prime_UTR 18006483 18006838 18006483 ID=Msa0761010-mRNA-1:three_prime_utr;Parent=Msa0761010-mRNA-1
Gene Sequence

>Msa0761010

ATGGAGTCCCAAAGCTGCACTCAAGAGCAAGGGAAAGTGATAGTTCAAGACAAAAACTCAGGCCTGGGTTTGGGCAATGTGTTGTGCAAGACAGGTAAAGGTTGGACATGTGTTATAACTAGGACTACTGGACCTGATGCTGGCAAAGTTTTTGTTAAATGCGGTGAAAATTGCACCTGCACACTTGATGGTGGAGCCGTGACACCTGAAATTGAGAGTAGCAGTGACAATGGCAGTGAAACATTCTGCAAGTGTGGTGAAGGATGGAGTTGTTCCATTTTTAGGACTGAAGGCCCTGATGCAGACTCAGGCAAGGGATTTGCTGATTGCACTCAAGAGTATAACTGTGCTTGTAAATGTTGA
Protein sequence

>Msa0761010

MESQSCTQEQGKVIVQDKNSGLGLGNVLCKTGKGWTCVITRTTGPDAGKVFVKCGENCTCTLDGGAVTPEIESSSDNGSETFCKCGEGWSCSIFRTEGPDADSGKGFADCTQEYNCACKC*