AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0606060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0606060 MtrunA17_Chr4g0035491 90.617 405 32 2 23 421 21 425 0.0 719
Msa0606060 MtrunA17_Chr4g0035511 94.286 140 8 0 413 552 39 178 3.92e-86 264
Msa0606060 MtrunA17_Chr7g0269501 63.380 142 51 1 406 546 33 174 5.20e-51 173
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0606060 AT2G38780.4 55.585 376 145 8 55 421 88 450 1.70e-131 392
Msa0606060 AT2G38780.1 55.108 372 153 7 55 421 84 446 1.74e-131 392
Msa0606060 AT2G38780.6 52.632 399 144 9 55 421 88 473 8.19e-127 380
Msa0606060 AT2G38780.5 56.401 289 106 6 55 335 88 364 6.91e-100 307
Msa0606060 AT2G38780.12 55.789 285 114 5 55 335 84 360 7.07e-100 306
Msa0606060 AT2G38780.2 56.794 287 104 6 55 333 88 362 1.14e-99 307
Msa0606060 AT2G38780.13 53.208 265 112 5 55 315 84 340 1.82e-84 266
Msa0606060 AT2G38780.3 53.208 265 112 5 55 315 88 344 2.57e-84 266
Msa0606060 AT2G38780.9 53.208 265 112 5 55 315 88 344 2.57e-84 266
Msa0606060 AT2G38780.11 53.208 265 112 5 55 315 88 344 2.57e-84 266
Msa0606060 AT2G38780.8 53.208 265 112 5 55 315 88 344 2.57e-84 266
Msa0606060 AT2G38780.7 53.208 265 112 5 55 315 88 344 2.57e-84 266
Msa0606060 AT2G38780.10 53.208 265 112 5 55 315 88 344 3.57e-84 268
Msa0606060 AT4G02250.1 32.090 134 88 1 417 547 26 159 1.29e-14 72.0
Msa0606060 AT1G55770.1 35.052 97 60 1 454 547 79 175 1.85e-14 72.0

Find 110 sgRNAs with CRISPR-Local

Find 305 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAACATGTTTCGCTCTTTA+TGG 0.089370 4_2:-52159658 None:intergenic
CTTCTTCTTGTTCATGTTCA+TGG 0.117942 4_2:+52159761 Msa0606060:CDS
TGAATTCCTGGGTCCAAATT+TGG 0.160047 4_2:-52164473 None:intergenic
ACAATTCATGTACAGCTTTC+AGG 0.201984 4_2:+52162645 Msa0606060:CDS
TTATTAAACGCAAGCTTTAT+AGG 0.218801 4_2:-52159898 None:intergenic
CATTGCTGTTGCCGTTAATA+AGG 0.234346 4_2:+52164703 Msa0606060:CDS
GATGATCGACGATCCAAATT+TGG 0.256060 4_2:+52164460 Msa0606060:CDS
GCTGCTTACAAGAAGAAATA+TGG 0.267605 4_2:+52161415 Msa0606060:CDS
GAAGGATGGTGACTTCTTAA+TGG 0.279378 4_2:+52161783 Msa0606060:CDS
GCCAAACCTTGTTGAATTCC+TGG 0.321141 4_2:-52164485 None:intergenic
CGGTGCTGATGGAGGGAAAA+AGG 0.321282 4_2:+52159978 Msa0606060:CDS
ACACCCCATGTAGAAACTTT+TGG 0.326916 4_2:-52161166 None:intergenic
GATTAAATCAAACTCTGGTT+TGG 0.332351 4_2:+52159942 Msa0606060:CDS
CCTTGACCTGTTCAGTTTGG+AGG 0.348105 4_2:+52161310 Msa0606060:intron
GTCAATGACTTTCTCATAGT+AGG 0.348199 4_2:-52161833 None:intergenic
TTTAGAGAGTGAAGAAGAAA+AGG 0.358296 4_2:+52161360 Msa0606060:CDS
TCATCATCCTTAGTCTGTTC+AGG 0.364395 4_2:-52161127 None:intergenic
TGATTGCAAGGAGACTTTAT+TGG 0.364633 4_2:+52164508 Msa0606060:CDS
TCTGAGAAGGAGTCTGAAAA+AGG 0.367037 4_2:-52161031 None:intergenic
TTGAGCCACTTCATCTTTAA+CGG 0.367047 4_2:-52163539 None:intergenic
ATTAAATCAAACTCTGGTTT+GGG 0.367973 4_2:+52159943 Msa0606060:CDS
CCAAACGTGATGCTCAATTA+TGG 0.371905 4_2:+52164579 Msa0606060:CDS
ATTATGGTTGCAAGCAGCTT+TGG 0.380601 4_2:+52164595 Msa0606060:CDS
CCCAGGAATTCAACAAGGTT+TGG 0.387218 4_2:+52164484 Msa0606060:CDS
TGAGCCACTTCATCTTTAAC+GGG 0.391252 4_2:-52163538 None:intergenic
TTCTTGCCTACTTTAACACT+TGG 0.395553 4_2:-52162616 None:intergenic
AAGGAGGGAGTGAGAGTACT+TGG 0.407449 4_2:+52160885 Msa0606060:CDS
AGAATTGTCTGTTTCAAAGA+TGG 0.414379 4_2:+52160946 Msa0606060:CDS
ATGTGTGTTGGTCCTTTCTT+CGG 0.414944 4_2:+52164340 Msa0606060:CDS
CATTGACAAATTACCCTTCA+AGG 0.416440 4_2:+52161849 Msa0606060:CDS
ATCTGTCATAGCCTTATTAA+CGG 0.417652 4_2:-52164714 None:intergenic
ATTTAGAAGTTTACCTTGAA+GGG 0.427228 4_2:-52161862 None:intergenic
ATTGCAATCTTCACAGAAAC+CGG 0.441020 4_2:-52160006 None:intergenic
TTTGAAATATTGTTAGGTCT+AGG 0.441867 4_2:-52161193 None:intergenic
CCATAATTGAGCATCACGTT+TGG 0.443848 4_2:-52164579 None:intergenic
TCCTTAGTCTGTTCAGGCTG+TGG 0.450969 4_2:-52161121 None:intergenic
ATAATATTTATAGGCATTGA+AGG 0.452788 4_2:+52161765 Msa0606060:intron
TGACAATAGTGTTGGTAAGA+AGG 0.457261 4_2:+52160922 Msa0606060:CDS
AATTTAGAAGTTTACCTTGA+AGG 0.460312 4_2:-52161863 None:intergenic
GGCTCACTTTGTCCGAAGAA+AGG 0.464221 4_2:-52164352 None:intergenic
AAGGGGATTGCCACCTGGAC+TGG 0.466766 4_2:+52161006 Msa0606060:CDS
TGACCTGTTCAGTTTGGAGG+TGG 0.468485 4_2:+52161313 Msa0606060:intron
CCTGAGGTGGAGCTTATTGT+CGG 0.470019 4_2:+52161064 Msa0606060:CDS
TCAAGAAAGTGAAATCAATC+AGG 0.474812 4_2:+52163558 Msa0606060:CDS
CCAAACCTTGTTGAATTCCT+GGG 0.480592 4_2:-52164484 None:intergenic
TCCACAGCCTGAACAGACTA+AGG 0.482156 4_2:+52161120 Msa0606060:CDS
GACAATAGTGTTGGTAAGAA+GGG 0.482595 4_2:+52160923 Msa0606060:CDS
TCAATGACTTTCTCATAGTA+GGG 0.487497 4_2:-52161832 None:intergenic
GGTGGAAGAACTATACGTCC+TGG 0.503929 4_2:+52161331 Msa0606060:CDS
TAAAGAGCGAAACATGTTCA+TGG 0.506795 4_2:+52159661 Msa0606060:five_prime_UTR
ACCTGGCTATGATATCACTA+AGG 0.507932 4_2:+52164393 Msa0606060:CDS
ACAAGGTTTGGCTGATTGCA+AGG 0.508120 4_2:+52164496 Msa0606060:CDS
TCTGTTAGTGAAACTGATCA+AGG 0.516186 4_2:+52160066 Msa0606060:CDS
AGGAGGGAGTGAGAGTACTT+GGG 0.519057 4_2:+52160886 Msa0606060:CDS
TCTTGCCTACTTTAACACTT+GGG 0.521824 4_2:-52162615 None:intergenic
GAATCGATTAAATCAAACTC+TGG 0.521956 4_2:+52159937 Msa0606060:CDS
ATTGAGCAAAACGGTGCTGA+TGG 0.524701 4_2:+52159967 Msa0606060:CDS
TATTTATAGGCATTGAAGGA+TGG 0.534214 4_2:+52161769 Msa0606060:intron
AAAGTATAAGCAGAATAAAG+AGG 0.535033 4_2:+52160041 Msa0606060:CDS
ACAAGCCAAAAGTTTCTACA+TGG 0.538624 4_2:+52161161 Msa0606060:CDS
TCTCACCCAAGTGTTAAAGT+AGG 0.553096 4_2:+52162610 Msa0606060:CDS
GTGGAAGAACTATACGTCCT+GGG 0.553555 4_2:+52161332 Msa0606060:CDS
TGGCCGCTTCAAACGCGACC+GGG 0.557203 4_2:+52164417 Msa0606060:CDS
GTGGCCGCTTCAAACGCGAC+CGG 0.557441 4_2:+52164416 Msa0606060:CDS
CTACCCCGTTAAAGATGAAG+TGG 0.559497 4_2:+52163534 Msa0606060:CDS
ACATGTGATGCTTCAATACC+TGG 0.560104 4_2:+52164629 Msa0606060:CDS
CCCTTAGTGATATCATAGCC+AGG 0.560549 4_2:-52164394 None:intergenic
TAAATGCATCAAAATAACTC+TGG 0.561561 4_2:-52163495 None:intergenic
GCAGGCTATGGAAATGATGA+AGG 0.561630 4_2:+52163432 Msa0606060:intron
TGTGAAGATTGCAATGGAGA+AGG 0.563126 4_2:+52160014 Msa0606060:CDS
CTGCCACAGTATCCTCAAGC+TGG 0.563269 4_2:-52164541 None:intergenic
AAGACAAGGGGATTGCCACC+TGG 0.573117 4_2:+52161001 Msa0606060:CDS
AGGCAAGTCATCGTCTGAGA+AGG 0.577048 4_2:-52161044 None:intergenic
CCGACAATAAGCTCCACCTC+AGG 0.579887 4_2:-52161064 None:intergenic
AGACGATGACTTGCCTGAGG+TGG 0.579966 4_2:+52161051 Msa0606060:CDS
AATGGACGCGGGAAAACTGA+AGG 0.586192 4_2:+52161801 Msa0606060:CDS
AGCAAAACGGTGCTGATGGA+GGG 0.586859 4_2:+52159971 Msa0606060:CDS
GGAGGGAGTGAGAGTACTTG+GGG 0.587353 4_2:+52160887 Msa0606060:CDS
GAGCAAAACGGTGCTGATGG+AGG 0.587753 4_2:+52159970 Msa0606060:CDS
TGGTGACTTCTTAATGGACG+CGG 0.588889 4_2:+52161789 Msa0606060:CDS
TCACTCTCTAAAATCTCCCC+AGG 0.590984 4_2:-52161349 None:intergenic
GACGATCCAAATTTGGACCC+AGG 0.607875 4_2:+52164467 Msa0606060:CDS
AATGTGAATGACAATAGTGT+TGG 0.608670 4_2:+52160914 Msa0606060:CDS
CTTTGCAAACATACCTACTG+AGG 0.611061 4_2:-52162201 None:intergenic
TTTGTCAAGACTCCCTCAGT+AGG 0.612816 4_2:+52162188 Msa0606060:CDS
TTTCACATCGGATAGTATCC+CGG 0.613806 4_2:-52164435 None:intergenic
CAAGCCAAAAGTTTCTACAT+GGG 0.621826 4_2:+52161162 Msa0606060:CDS
TATCCCGGTCGCGTTTGAAG+CGG 0.622386 4_2:-52164420 None:intergenic
CCTGGCTATGATATCACTAA+GGG 0.625300 4_2:+52164394 Msa0606060:CDS
GGATGCAGAAAGCCAGCTTG+AGG 0.627877 4_2:+52164529 Msa0606060:CDS
CTCAGACGATGACTTGCCTG+AGG 0.631457 4_2:+52161048 Msa0606060:CDS
GGTTTGGGAATTGAGCAAAA+CGG 0.633600 4_2:+52159958 Msa0606060:CDS
GCCCTGCAGAGTGAGCTACA+TGG 0.636806 4_2:+52162142 Msa0606060:intron
GAGAGAACATCATCATCACC+AGG 0.641144 4_2:-52164647 None:intergenic
GGTGACTTCTTAATGGACGC+GGG 0.642391 4_2:+52161790 Msa0606060:CDS
ATGGATTAGCTGCTTTACAG+TGG 0.643271 4_2:+52162161 Msa0606060:CDS
GGCTATGATATCACTAAGGG+TGG 0.644684 4_2:+52164397 Msa0606060:CDS
TTGGACCCAGGAATTCAACA+AGG 0.653837 4_2:+52164479 Msa0606060:CDS
CGTTGCGCATGAAACCAACA+AGG 0.659063 4_2:+52159791 Msa0606060:CDS
GGTTTCTGTGAAGATTGCAA+TGG 0.663563 4_2:+52160008 Msa0606060:CDS
TGGAAGAACTATACGTCCTG+GGG 0.672309 4_2:+52161333 Msa0606060:CDS
AAGCCAAAAGTTTCTACATG+GGG 0.672588 4_2:+52161163 Msa0606060:CDS
ACAAGCGACTCTAAAAGACC+TGG 0.672920 4_2:+52164376 Msa0606060:CDS
TTTGCAAACATACCTACTGA+GGG 0.676039 4_2:-52162200 None:intergenic
TAACAAGGAACAATGTGTGT+TGG 0.683179 4_2:+52164328 Msa0606060:intron
AAGCCAGCTTGAGGATACTG+TGG 0.683517 4_2:+52164538 Msa0606060:CDS
GAGCCACTTCATCTTTAACG+GGG 0.710162 4_2:-52163537 None:intergenic
AGAGCGAAACATGTTCATGG+TGG 0.717217 4_2:+52159664 Msa0606060:five_prime_UTR
TATGAACCAAGAAAACAACA+AGG 0.765280 4_2:+52159840 Msa0606060:CDS
TCATGGTGGTAAGTTCTGAG+TGG 0.772718 4_2:+52159678 Msa0606060:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTATTTTTAATTAA+TGG + chr4_2:52159711-52159730 Msa0606060:exon 0.0%
!! GAATTCTATATAATATTTAT+AGG + chr4_2:52161756-52161775 Msa0606060:intron 10.0%
!! ATAAATATAAATAATAGGAT+AGG - chr4_2:52162383-52162402 None:intergenic 10.0%
!! TCATTAAAAAATAAATGTAA+CGG + chr4_2:52162976-52162995 Msa0606060:intron 10.0%
!! GAAAAATATTTATTTACAAA+TGG + chr4_2:52163030-52163049 Msa0606060:intron 10.0%
!!! AAAATTAGAGTATTAATTTA+GGG - chr4_2:52164028-52164047 None:intergenic 10.0%
!!! TAAAATTAGAGTATTAATTT+AGG - chr4_2:52164029-52164048 None:intergenic 10.0%
!!! AATAAGATCATACTTATTTT+GGG - chr4_2:52160565-52160584 None:intergenic 15.0%
!!! TAATAAGATCATACTTATTT+TGG - chr4_2:52160566-52160585 None:intergenic 15.0%
!!! TATAAACATTGATAATGAAA+AGG + chr4_2:52160800-52160819 Msa0606060:intron 15.0%
!!! CTAAAAAATGCTTTAAAAAA+GGG - chr4_2:52161998-52162017 None:intergenic 15.0%
!! TATTATTTGCAAAGTAAAAT+TGG - chr4_2:52163184-52163203 None:intergenic 15.0%
!!! TTTTACTTTGCAAATAATAA+TGG + chr4_2:52163185-52163204 Msa0606060:intron 15.0%
!!! AAACTATGAAATTTTTAGAA+AGG + chr4_2:52163210-52163229 Msa0606060:intron 15.0%
!! CATTAACAATTAAAAAGAAA+TGG - chr4_2:52163694-52163713 None:intergenic 15.0%
!! GATATTTATATGTATATAGT+AGG + chr4_2:52163799-52163818 Msa0606060:intron 15.0%
!!! TTTATTCTGCTTATACTTTT+TGG - chr4_2:52160040-52160059 None:intergenic 20.0%
!! ATATAGTGATATAGAGTTAT+TGG + chr4_2:52160421-52160440 Msa0606060:intron 20.0%
!! TTATTATAAAACGAAGTCAT+TGG + chr4_2:52160604-52160623 Msa0606060:intron 20.0%
!!! AATTTATTTTTAGGATTGCA+AGG + chr4_2:52160866-52160885 Msa0606060:intron 20.0%
!!! ACTGTTTTTGAAATATTGTT+AGG - chr4_2:52161202-52161221 None:intergenic 20.0%
!! TTCATGAAATAAATCATGTT+GGG - chr4_2:52161739-52161758 None:intergenic 20.0%
!! ATTCATGAAATAAATCATGT+TGG - chr4_2:52161740-52161759 None:intergenic 20.0%
!!! ATAATATTTATAGGCATTGA+AGG + chr4_2:52161765-52161784 Msa0606060:intron 20.0%
!!! GCTAAAAAATGCTTTAAAAA+AGG - chr4_2:52161999-52162018 None:intergenic 20.0%
!! AAACTAGGAAAACATATATA+TGG + chr4_2:52162078-52162097 Msa0606060:intron 20.0%
!! TAGGTATAGATAATATAGTT+AGG - chr4_2:52162364-52162383 None:intergenic 20.0%
!! TCATCAAATCAAAATATGTT+TGG - chr4_2:52162546-52162565 None:intergenic 20.0%
!!! TCATCAAACTTTTTTATTTG+TGG + chr4_2:52162829-52162848 Msa0606060:intron 20.0%
!!! TACTTTTAACACTCTTTAAA+AGG - chr4_2:52163060-52163079 None:intergenic 20.0%
!!! TATGAAAGTATTGAATTCAA+AGG - chr4_2:52163121-52163140 None:intergenic 20.0%
!! ACAACTTAATAGATATGTAT+AGG + chr4_2:52163758-52163777 Msa0606060:intron 20.0%
!! TTATATGTATATAGTAGGAT+AGG + chr4_2:52163804-52163823 Msa0606060:intron 20.0%
!!! ATTCTAAAAAATACTTCATG+TGG + chr4_2:52163946-52163965 Msa0606060:intron 20.0%
!!! ACTCATTACTTTTCTATTTT+TGG - chr4_2:52163984-52164003 None:intergenic 20.0%
!! TTTGTTTATAAACTATTGTG+AGG - chr4_2:52164140-52164159 None:intergenic 20.0%
!! TTATTAAACGCAAGCTTTAT+AGG - chr4_2:52159901-52159920 None:intergenic 25.0%
!! ATTAAATCAAACTCTGGTTT+GGG + chr4_2:52159943-52159962 Msa0606060:CDS 25.0%
! AAAGTATAAGCAGAATAAAG+AGG + chr4_2:52160041-52160060 Msa0606060:CDS 25.0%
! AAGTGCTTAATTAATGTGTT+AGG + chr4_2:52160240-52160259 Msa0606060:intron 25.0%
! GCTTATAGAAAATATGCTTA+TGG + chr4_2:52160324-52160343 Msa0606060:intron 25.0%
! TAATCAAAGACATCAACTAA+TGG - chr4_2:52160649-52160668 None:intergenic 25.0%
!! TTTGAAATATTGTTAGGTCT+AGG - chr4_2:52161196-52161215 None:intergenic 25.0%
! GGTAAACATATCATATCTAT+TGG + chr4_2:52161477-52161496 Msa0606060:intron 25.0%
!! AAGGATGGTAAGAATATTTT+GGG - chr4_2:52161506-52161525 None:intergenic 25.0%
!! AAAGGATGGTAAGAATATTT+TGG - chr4_2:52161507-52161526 None:intergenic 25.0%
! TTGCAATATTTGTTTGCATA+TGG + chr4_2:52161557-52161576 Msa0606060:intron 25.0%
!!! TTCTTAACTTGTTGAAATGA+AGG + chr4_2:52161658-52161677 Msa0606060:intron 25.0%
! ATTTAGAAGTTTACCTTGAA+GGG - chr4_2:52161865-52161884 None:intergenic 25.0%
! AATTTAGAAGTTTACCTTGA+AGG - chr4_2:52161866-52161885 None:intergenic 25.0%
! ATTATGTACAAGATGTTTAG+AGG + chr4_2:52161883-52161902 Msa0606060:intron 25.0%
!! GGTGTTTTGCTTATTATTTA+TGG + chr4_2:52162490-52162509 Msa0606060:intron 25.0%
!!! ATTTTGATTTGATGATTGAC+AGG + chr4_2:52162551-52162570 Msa0606060:intron 25.0%
! AATATTCCACAGTAACATTA+TGG + chr4_2:52162752-52162771 Msa0606060:intron 25.0%
!! TTAATTTTACAGTGTAATGC+AGG - chr4_2:52162900-52162919 None:intergenic 25.0%
! ACAAGCTTTCATGTAAAAAA+TGG - chr4_2:52163144-52163163 None:intergenic 25.0%
! TGCAAAGTAAAATTGGATAA+TGG - chr4_2:52163177-52163196 None:intergenic 25.0%
! AGCAAAGAAAATCATTACTA+CGG - chr4_2:52163331-52163350 None:intergenic 25.0%
! TAAATGCATCAAAATAACTC+TGG - chr4_2:52163498-52163517 None:intergenic 25.0%
! AGAAGTAGTACAACAAAAAT+AGG - chr4_2:52163613-52163632 None:intergenic 25.0%
!! ATCTATTAAGTTGTTCAAAC+TGG - chr4_2:52163752-52163771 None:intergenic 25.0%
! TATGACATAAGATTGGAATT+TGG + chr4_2:52163828-52163847 Msa0606060:intron 25.0%
!!! TTCTATTTTTGGCTAAACTA+GGG - chr4_2:52163973-52163992 None:intergenic 25.0%
!!! TTTCTATTTTTGGCTAAACT+AGG - chr4_2:52163974-52163993 None:intergenic 25.0%
! AGGGTTAAATTGTTTGTAAT+TGG - chr4_2:52164106-52164125 None:intergenic 25.0%
! TCAACATAGAAGAAAAAGAA+TGG + chr4_2:52164196-52164215 Msa0606060:intron 25.0%
AACCAACAAGGTTAAAAACT+AGG + chr4_2:52159803-52159822 Msa0606060:CDS 30.0%
!! TTCCTAGTTTTTAACCTTGT+TGG - chr4_2:52159808-52159827 None:intergenic 30.0%
TATGAACCAAGAAAACAACA+AGG + chr4_2:52159840-52159859 Msa0606060:CDS 30.0%
!!! AAGATTCCTTGTTGTTTTCT+TGG - chr4_2:52159849-52159868 None:intergenic 30.0%
GAATCGATTAAATCAAACTC+TGG + chr4_2:52159937-52159956 Msa0606060:CDS 30.0%
GATTAAATCAAACTCTGGTT+TGG + chr4_2:52159942-52159961 Msa0606060:CDS 30.0%
! TAGCATAAGCAAAGTACTTA+TGG - chr4_2:52160219-52160238 None:intergenic 30.0%
!! AATGAAAAGGTGTGTACTTT+TGG + chr4_2:52160813-52160832 Msa0606060:intron 30.0%
!! GGGTGTCTGAATTTATTTTT+AGG + chr4_2:52160857-52160876 Msa0606060:intron 30.0%
!!! TTATTTTTAGGATTGCAAGG+AGG + chr4_2:52160869-52160888 Msa0606060:intron 30.0%
!!! TATTTTTAGGATTGCAAGGA+GGG + chr4_2:52160870-52160889 Msa0606060:intron 30.0%
AATGTGAATGACAATAGTGT+TGG + chr4_2:52160914-52160933 Msa0606060:CDS 30.0%
AGAATTGTCTGTTTCAAAGA+TGG + chr4_2:52160946-52160965 Msa0606060:CDS 30.0%
!! TGTTTCAAAGATGGATTTTG+TGG + chr4_2:52160955-52160974 Msa0606060:CDS 30.0%
!! GTTTCAAAGATGGATTTTGT+GGG + chr4_2:52160956-52160975 Msa0606060:CDS 30.0%
!! TTTCAAAGATGGATTTTGTG+GGG + chr4_2:52160957-52160976 Msa0606060:CDS 30.0%
!!! GTTTTTTCTGCAAGAAGATT+TGG - chr4_2:52161241-52161260 None:intergenic 30.0%
AAGGAAAGGGTAAATTTGAA+AGG - chr4_2:52161290-52161309 None:intergenic 30.0%
TTTAGAGAGTGAAGAAGAAA+AGG + chr4_2:52161360-52161379 Msa0606060:CDS 30.0%
GAAAAAACACGCTAAAAAGA+AGG - chr4_2:52161530-52161549 None:intergenic 30.0%
ATGTAGTGTATCATTAGCAA+TGG + chr4_2:52161625-52161644 Msa0606060:intron 30.0%
!! TATTTATAGGCATTGAAGGA+TGG + chr4_2:52161769-52161788 Msa0606060:intron 30.0%
TCAATGACTTTCTCATAGTA+GGG - chr4_2:52161835-52161854 None:intergenic 30.0%
CCAACTAATACAAACCAAAA+GGG + chr4_2:52161961-52161980 Msa0606060:intron 30.0%
CTAGGAAAACATATATATGG+AGG + chr4_2:52162081-52162100 Msa0606060:intron 30.0%
CATATATATGGAGGATTTAG+AGG + chr4_2:52162090-52162109 Msa0606060:intron 30.0%
CATTGAACTCAATAAAGACA+GGG - chr4_2:52162700-52162719 None:intergenic 30.0%
TCATTGAACTCAATAAAGAC+AGG - chr4_2:52162701-52162720 None:intergenic 30.0%
TGATGAGTATATGCACTAAT+AGG - chr4_2:52162815-52162834 None:intergenic 30.0%
ACAAAGCTAGATCGAAATAT+AGG - chr4_2:52163265-52163284 None:intergenic 30.0%
TGAAACAAAGTTTAAGCACA+AGG - chr4_2:52163306-52163325 None:intergenic 30.0%
TCAAGAAAGTGAAATCAATC+AGG + chr4_2:52163558-52163577 Msa0606060:CDS 30.0%
ATTGTTAATGATCAAGTCCT+TGG + chr4_2:52163704-52163723 Msa0606060:intron 30.0%
GATAGGATATGACATAAGAT+TGG + chr4_2:52163821-52163840 Msa0606060:intron 30.0%
ACATAAGATTGGAATTTGGA+TGG + chr4_2:52163832-52163851 Msa0606060:intron 30.0%
GTAACCATCCAATAAAATTG+AGG + chr4_2:52164066-52164085 Msa0606060:intron 30.0%
! TTGACCTCAATTTTATTGGA+TGG - chr4_2:52164073-52164092 None:intergenic 30.0%
CACAAAATACTTATCTCTCT+TGG + chr4_2:52164223-52164242 Msa0606060:intron 30.0%
! CTTGGTGGTTTAATAAAATG+AGG - chr4_2:52164256-52164275 None:intergenic 30.0%
! TGCACATACTTTGTTGATTA+GGG - chr4_2:52164300-52164319 None:intergenic 30.0%
! TTGCACATACTTTGTTGATT+AGG - chr4_2:52164301-52164320 None:intergenic 30.0%
!! ATCTGTCATAGCCTTATTAA+CGG - chr4_2:52164717-52164736 None:intergenic 30.0%
TAAAGAGCGAAACATGTTCA+TGG + chr4_2:52159661-52159680 Msa0606060:five_prime_UTR 35.0%
CTTCTTCTTGTTCATGTTCA+TGG + chr4_2:52159761-52159780 Msa0606060:CDS 35.0%
ATTGCAATCTTCACAGAAAC+CGG - chr4_2:52160009-52160028 None:intergenic 35.0%
TCTGTTAGTGAAACTGATCA+AGG + chr4_2:52160066-52160085 Msa0606060:CDS 35.0%
! TTGCTTCACCTATTTTGCAT+CGG + chr4_2:52160285-52160304 Msa0606060:intron 35.0%
CCACAAATAGTGAAGAGATA+GGG - chr4_2:52160355-52160374 None:intergenic 35.0%
!!! TTATTTTGGGTGCTTAAGTG+GGG - chr4_2:52160552-52160571 None:intergenic 35.0%
!!! CTTATTTTGGGTGCTTAAGT+GGG - chr4_2:52160553-52160572 None:intergenic 35.0%
!!! ACTTATTTTGGGTGCTTAAG+TGG - chr4_2:52160554-52160573 None:intergenic 35.0%
TGTATCTTTGGCTACAATTG+AGG - chr4_2:52160735-52160754 None:intergenic 35.0%
TGTAGCCAAAGATACAACAA+TGG + chr4_2:52160739-52160758 Msa0606060:intron 35.0%
TTAGGCCATTGTTGTATCTT+TGG - chr4_2:52160747-52160766 None:intergenic 35.0%
!! TGACAATAGTGTTGGTAAGA+AGG + chr4_2:52160922-52160941 Msa0606060:CDS 35.0%
!! GACAATAGTGTTGGTAAGAA+GGG + chr4_2:52160923-52160942 Msa0606060:CDS 35.0%
TTTCGGACAAAAAGAAGACA+AGG + chr4_2:52160987-52161006 Msa0606060:CDS 35.0%
TTCGGACAAAAAGAAGACAA+GGG + chr4_2:52160988-52161007 Msa0606060:CDS 35.0%
ACAAGCCAAAAGTTTCTACA+TGG + chr4_2:52161161-52161180 Msa0606060:CDS 35.0%
CAAGCCAAAAGTTTCTACAT+GGG + chr4_2:52161162-52161181 Msa0606060:CDS 35.0%
AAGCCAAAAGTTTCTACATG+GGG + chr4_2:52161163-52161182 Msa0606060:CDS 35.0%
CACAAACAATTGGACTATCT+AGG - chr4_2:52161263-52161282 None:intergenic 35.0%
!! GAAAGGCATTCACAAACAAT+TGG - chr4_2:52161273-52161292 None:intergenic 35.0%
GCTGCTTACAAGAAGAAATA+TGG + chr4_2:52161415-52161434 Msa0606060:CDS 35.0%
!!! TCGCATTCGATTTTTAGCTT+TGG - chr4_2:52161454-52161473 None:intergenic 35.0%
AAAGCTAAAAATCGAATGCG+AGG + chr4_2:52161453-52161472 Msa0606060:CDS 35.0%
AACACGCTAAAAAGAAGGAA+AGG - chr4_2:52161525-52161544 None:intergenic 35.0%
!! TTGAAATGAAGGCATTCACT+TGG + chr4_2:52161669-52161688 Msa0606060:intron 35.0%
GTCAATGACTTTCTCATAGT+AGG - chr4_2:52161836-52161855 None:intergenic 35.0%
CATTGACAAATTACCCTTCA+AGG + chr4_2:52161849-52161868 Msa0606060:CDS 35.0%
ATGTACAAGATGTTTAGAGG+TGG + chr4_2:52161886-52161905 Msa0606060:intron 35.0%
TGTACAAGATGTTTAGAGGT+GGG + chr4_2:52161887-52161906 Msa0606060:intron 35.0%
GCATTCAGAGAGATGATATT+AGG - chr4_2:52161942-52161961 None:intergenic 35.0%
GCCAACTAATACAAACCAAA+AGG + chr4_2:52161960-52161979 Msa0606060:intron 35.0%
!!! CCCTTTTGGTTTGTATTAGT+TGG - chr4_2:52161964-52161983 None:intergenic 35.0%
TCATGACATATACTCTAGCA+GGG + chr4_2:52162055-52162074 Msa0606060:intron 35.0%
TTTGCAAACATACCTACTGA+GGG - chr4_2:52162203-52162222 None:intergenic 35.0%
AGTCTATGTAGAACATAGCA+TGG - chr4_2:52162260-52162279 None:intergenic 35.0%
AACCTTGCATATGCATATTG+GGG - chr4_2:52162291-52162310 None:intergenic 35.0%
CAACCTTGCATATGCATATT+GGG - chr4_2:52162292-52162311 None:intergenic 35.0%
ACAACCTTGCATATGCATAT+TGG - chr4_2:52162293-52162312 None:intergenic 35.0%
!! CAAGGTTGTTATTTCAGACT+GGG + chr4_2:52162304-52162323 Msa0606060:intron 35.0%
!! AAGGTTGTTATTTCAGACTG+GGG + chr4_2:52162305-52162324 Msa0606060:intron 35.0%
AGTTAGGTTTCAGCAAAGAA+AGG - chr4_2:52162348-52162367 None:intergenic 35.0%
TTAGTGAACGAAGTCATAGA+TGG - chr4_2:52162440-52162459 None:intergenic 35.0%
TCTTGCCTACTTTAACACTT+GGG - chr4_2:52162618-52162637 None:intergenic 35.0%
TTCTTGCCTACTTTAACACT+TGG - chr4_2:52162619-52162638 None:intergenic 35.0%
ACAATTCATGTACAGCTTTC+AGG + chr4_2:52162645-52162664 Msa0606060:CDS 35.0%
AACTCAATAAAGACAGGGTA+AGG - chr4_2:52162695-52162714 None:intergenic 35.0%
ATCTCACCATAATGTTACTG+TGG - chr4_2:52162761-52162780 None:intergenic 35.0%
ACATTATGGTGAGATGTGAT+TGG + chr4_2:52162766-52162785 Msa0606060:intron 35.0%
GCTTATATATGAACTCTTGC+AGG + chr4_2:52163414-52163433 Msa0606060:intron 35.0%
TTGAGCCACTTCATCTTTAA+CGG - chr4_2:52163542-52163561 None:intergenic 35.0%
TTCAATCTCTTTGTGTTCCA+AGG - chr4_2:52163724-52163743 None:intergenic 35.0%
!! TTTTAGAAGCAACAAGCAAG+TGG + chr4_2:52164044-52164063 Msa0606060:intron 35.0%
TTGTGAGGAAACTTAGTAGA+GGG - chr4_2:52164125-52164144 None:intergenic 35.0%
ATTGTGAGGAAACTTAGTAG+AGG - chr4_2:52164126-52164145 None:intergenic 35.0%
! GCACATACTTTGTTGATTAG+GGG - chr4_2:52164299-52164318 None:intergenic 35.0%
AACACACATTGTTCCTTGTT+AGG - chr4_2:52164329-52164348 None:intergenic 35.0%
TAACAAGGAACAATGTGTGT+TGG + chr4_2:52164328-52164347 Msa0606060:intron 35.0%
TGATTGCAAGGAGACTTTAT+TGG + chr4_2:52164508-52164527 Msa0606060:CDS 35.0%
GGTTTGGGAATTGAGCAAAA+CGG + chr4_2:52159958-52159977 Msa0606060:CDS 40.0%
GGTTTCTGTGAAGATTGCAA+TGG + chr4_2:52160008-52160027 Msa0606060:CDS 40.0%
TGTGAAGATTGCAATGGAGA+AGG + chr4_2:52160014-52160033 Msa0606060:CDS 40.0%
TATAAGCACCCAATTACCTC+CGG - chr4_2:52160311-52160330 None:intergenic 40.0%
CCCTATCTCTTCACTATTTG+TGG + chr4_2:52160352-52160371 Msa0606060:intron 40.0%
GCCACAAATAGTGAAGAGAT+AGG - chr4_2:52160356-52160375 None:intergenic 40.0%
AGTGTTAGATGATGTCTACG+AGG + chr4_2:52160673-52160692 Msa0606060:intron 40.0%
CACAATCGTGGTAGCAATTT+AGG - chr4_2:52160765-52160784 None:intergenic 40.0%
CTAAATTGCTACCACGATTG+TGG + chr4_2:52160763-52160782 Msa0606060:intron 40.0%
ATAAAGTGCAACCACAATCG+TGG - chr4_2:52160777-52160796 None:intergenic 40.0%
TCGGACAAAAAGAAGACAAG+GGG + chr4_2:52160989-52161008 Msa0606060:CDS 40.0%
TCTGAGAAGGAGTCTGAAAA+AGG - chr4_2:52161034-52161053 None:intergenic 40.0%
TCATCATCCTTAGTCTGTTC+AGG - chr4_2:52161130-52161149 None:intergenic 40.0%
! ACACCCCATGTAGAAACTTT+TGG - chr4_2:52161169-52161188 None:intergenic 40.0%
CGCTAAAAAGAAGGAAAGGA+TGG - chr4_2:52161521-52161540 None:intergenic 40.0%
GAAGGATGGTGACTTCTTAA+TGG + chr4_2:52161783-52161802 Msa0606060:CDS 40.0%
GTACAAGATGTTTAGAGGTG+GGG + chr4_2:52161888-52161907 Msa0606060:intron 40.0%
TACAAGATGTTTAGAGGTGG+GGG + chr4_2:52161889-52161908 Msa0606060:intron 40.0%
! GGGCAAACAAAATACCCTTT+TGG - chr4_2:52161978-52161997 None:intergenic 40.0%
GTCATGACATATACTCTAGC+AGG + chr4_2:52162054-52162073 Msa0606060:intron 40.0%
TATACTCTAGCAGGGAAACT+AGG + chr4_2:52162063-52162082 Msa0606060:intron 40.0%
!! ATGGATTAGCTGCTTTACAG+TGG + chr4_2:52162161-52162180 Msa0606060:CDS 40.0%
CTTTGCAAACATACCTACTG+AGG - chr4_2:52162204-52162223 None:intergenic 40.0%
!! GCAAGGTTGTTATTTCAGAC+TGG + chr4_2:52162303-52162322 Msa0606060:intron 40.0%
!! TTGTTATTTCAGACTGGGGA+CGG + chr4_2:52162309-52162328 Msa0606060:intron 40.0%
CCTATACTTCCAAGTCAAAG+AGG - chr4_2:52162472-52162491 None:intergenic 40.0%
!! CCTCTTTGACTTGGAAGTAT+AGG + chr4_2:52162469-52162488 Msa0606060:intron 40.0%
TCTCACCCAAGTGTTAAAGT+AGG + chr4_2:52162610-52162629 Msa0606060:CDS 40.0%
ATATGAACTCTTGCAGGCTA+TGG + chr4_2:52163420-52163439 Msa0606060:intron 40.0%
TGAGCCACTTCATCTTTAAC+GGG - chr4_2:52163541-52163560 None:intergenic 40.0%
!!! TCTCAACCCTTGCCATTTTT+AGG + chr4_2:52163879-52163898 Msa0606060:intron 40.0%
!!! AACCCTTGCCATTTTTAGGA+AGG + chr4_2:52163883-52163902 Msa0606060:intron 40.0%
!!! ACCCTTGCCATTTTTAGGAA+GGG + chr4_2:52163884-52163903 Msa0606060:intron 40.0%
TCCCTTCCTAAAAATGGCAA+GGG - chr4_2:52163888-52163907 None:intergenic 40.0%
! GCGCTTGACCTCAATTTTAT+TGG - chr4_2:52164077-52164096 None:intergenic 40.0%
! TGACTTGTGCAAAGGTAACT+TGG - chr4_2:52164274-52164293 None:intergenic 40.0%
ATGTGCAAACTTGCCTAACA+AGG + chr4_2:52164313-52164332 Msa0606060:intron 40.0%
! ATGTGTGTTGGTCCTTTCTT+CGG + chr4_2:52164340-52164359 Msa0606060:CDS 40.0%
ACCTGGCTATGATATCACTA+AGG + chr4_2:52164393-52164412 Msa0606060:CDS 40.0%
CCTGGCTATGATATCACTAA+GGG + chr4_2:52164394-52164413 Msa0606060:CDS 40.0%
TTTCACATCGGATAGTATCC+CGG - chr4_2:52164438-52164457 None:intergenic 40.0%
! GTCGATCATCGTTTTCACAT+CGG - chr4_2:52164450-52164469 None:intergenic 40.0%
GATGATCGACGATCCAAATT+TGG + chr4_2:52164460-52164479 Msa0606060:CDS 40.0%
TGAATTCCTGGGTCCAAATT+TGG - chr4_2:52164476-52164495 None:intergenic 40.0%
CCAAACCTTGTTGAATTCCT+GGG - chr4_2:52164487-52164506 None:intergenic 40.0%
CCATAATTGAGCATCACGTT+TGG - chr4_2:52164582-52164601 None:intergenic 40.0%
CCAAACGTGATGCTCAATTA+TGG + chr4_2:52164579-52164598 Msa0606060:CDS 40.0%
ATTATGGTTGCAAGCAGCTT+TGG + chr4_2:52164595-52164614 Msa0606060:CDS 40.0%
ACATGTGATGCTTCAATACC+TGG + chr4_2:52164629-52164648 Msa0606060:CDS 40.0%
! CATTGCTGTTGCCGTTAATA+AGG + chr4_2:52164703-52164722 Msa0606060:CDS 40.0%
AGAGCGAAACATGTTCATGG+TGG + chr4_2:52159664-52159683 Msa0606060:five_prime_UTR 45.0%
!! TCATGGTGGTAAGTTCTGAG+TGG + chr4_2:52159678-52159697 Msa0606060:five_prime_UTR 45.0%
! ATTGAGCAAAACGGTGCTGA+TGG + chr4_2:52159967-52159986 Msa0606060:CDS 45.0%
TGGAGGGAAAAAGGATTTGC+CGG + chr4_2:52159987-52160006 Msa0606060:CDS 45.0%
!! TTCACCTATTTTGCATCGGC+CGG + chr4_2:52160289-52160308 Msa0606060:intron 45.0%
CGCATCAATCGAAGTTATCG+AGG - chr4_2:52160711-52160730 None:intergenic 45.0%
! GGTGTGTACTTTTGGTCATG+CGG + chr4_2:52160821-52160840 Msa0606060:intron 45.0%
TCATGCGGTTCGTGCTAAAA+TGG + chr4_2:52160836-52160855 Msa0606060:intron 45.0%
CATGCGGTTCGTGCTAAAAT+GGG + chr4_2:52160837-52160856 Msa0606060:intron 45.0%
!! AAGATGGATTTTGTGGGGCT+TGG + chr4_2:52160962-52160981 Msa0606060:CDS 45.0%
!! TTTTGTGGGGCTTGGCTTTT+CGG + chr4_2:52160970-52160989 Msa0606060:CDS 45.0%
TCTGAAAAAGGAACCAGTCC+AGG - chr4_2:52161022-52161041 None:intergenic 45.0%
GAACAGGTCAAGGAAGGAAA+GGG - chr4_2:52161303-52161322 None:intergenic 45.0%
TGAACAGGTCAAGGAAGGAA+AGG - chr4_2:52161304-52161323 None:intergenic 45.0%
CAAACTGAACAGGTCAAGGA+AGG - chr4_2:52161309-52161328 None:intergenic 45.0%
CTTCCTTGACCTGTTCAGTT+TGG + chr4_2:52161307-52161326 Msa0606060:intron 45.0%
GTGGAAGAACTATACGTCCT+GGG + chr4_2:52161332-52161351 Msa0606060:CDS 45.0%
TGGAAGAACTATACGTCCTG+GGG + chr4_2:52161333-52161352 Msa0606060:CDS 45.0%
!! TCACTCTCTAAAATCTCCCC+AGG - chr4_2:52161352-52161371 None:intergenic 45.0%
GCTAAAAATCGAATGCGAGG+AGG + chr4_2:52161456-52161475 Msa0606060:CDS 45.0%
! TGGTGACTTCTTAATGGACG+CGG + chr4_2:52161789-52161808 Msa0606060:CDS 45.0%
TTTGTCAAGACTCCCTCAGT+AGG + chr4_2:52162188-52162207 Msa0606060:CDS 45.0%
CTCCCCAATATGCATATGCA+AGG + chr4_2:52162286-52162305 Msa0606060:intron 45.0%
!! TGTTATTTCAGACTGGGGAC+GGG + chr4_2:52162310-52162329 Msa0606060:intron 45.0%
CTACCATAGCCTCTTTGACT+TGG + chr4_2:52162460-52162479 Msa0606060:intron 45.0%
CTTCCAAGTCAAAGAGGCTA+TGG - chr4_2:52162466-52162485 None:intergenic 45.0%
GCAGGCTATGGAAATGATGA+AGG + chr4_2:52163432-52163451 Msa0606060:intron 45.0%
CTACCCCGTTAAAGATGAAG+TGG + chr4_2:52163534-52163553 Msa0606060:CDS 45.0%
GAGCCACTTCATCTTTAACG+GGG - chr4_2:52163540-52163559 None:intergenic 45.0%
CTCCCTTCCTAAAAATGGCA+AGG - chr4_2:52163889-52163908 None:intergenic 45.0%
!!! TGCCATTTTTAGGAAGGGAG+AGG + chr4_2:52163889-52163908 Msa0606060:intron 45.0%
GACCTCTCCCTTCCTAAAAA+TGG - chr4_2:52163894-52163913 None:intergenic 45.0%
TAGGAAGGGAGAGGTCATAT+AGG + chr4_2:52163898-52163917 Msa0606060:intron 45.0%
CTTGTGCAAAGGTAACTTGG+TGG - chr4_2:52164271-52164290 None:intergenic 45.0%
!! TAGGGGATTGACTTGTGCAA+AGG - chr4_2:52164282-52164301 None:intergenic 45.0%
!!! GGTCTTTTAGAGTCGCTTGT+TGG - chr4_2:52164376-52164395 None:intergenic 45.0%
! ACAAGCGACTCTAAAAGACC+TGG + chr4_2:52164376-52164395 Msa0606060:CDS 45.0%
CCCTTAGTGATATCATAGCC+AGG - chr4_2:52164397-52164416 None:intergenic 45.0%
GGCTATGATATCACTAAGGG+TGG + chr4_2:52164397-52164416 Msa0606060:CDS 45.0%
TTGGACCCAGGAATTCAACA+AGG + chr4_2:52164479-52164498 Msa0606060:CDS 45.0%
CCCAGGAATTCAACAAGGTT+TGG + chr4_2:52164484-52164503 Msa0606060:CDS 45.0%
GCCAAACCTTGTTGAATTCC+TGG - chr4_2:52164488-52164507 None:intergenic 45.0%
ACAAGGTTTGGCTGATTGCA+AGG + chr4_2:52164496-52164515 Msa0606060:CDS 45.0%
GAGAGAACATCATCATCACC+AGG - chr4_2:52164650-52164669 None:intergenic 45.0%
!! TAGTAAAATTTATTAAATAA+CGG - chr4_2:52160378-52160397 None:intergenic 5.0%
!! TAAGAATAAATATAAATAAT+AGG - chr4_2:52162388-52162407 None:intergenic 5.0%
!!! ATATTAAATCAAAATATTTT+TGG + chr4_2:52162931-52162950 Msa0606060:intron 5.0%
CGTTGCGCATGAAACCAACA+AGG + chr4_2:52159791-52159810 Msa0606060:CDS 50.0%
!! AGCAAAACGGTGCTGATGGA+GGG + chr4_2:52159971-52159990 Msa0606060:CDS 50.0%
!! AAGGAGGGAGTGAGAGTACT+TGG + chr4_2:52160885-52160904 Msa0606060:CDS 50.0%
!! AGGAGGGAGTGAGAGTACTT+GGG + chr4_2:52160886-52160905 Msa0606060:CDS 50.0%
GAAAAAGGAACCAGTCCAGG+TGG - chr4_2:52161019-52161038 None:intergenic 50.0%
AGGCAAGTCATCGTCTGAGA+AGG - chr4_2:52161047-52161066 None:intergenic 50.0%
CCTGAGGTGGAGCTTATTGT+CGG + chr4_2:52161064-52161083 Msa0606060:CDS 50.0%
TCCACAGCCTGAACAGACTA+AGG + chr4_2:52161120-52161139 Msa0606060:CDS 50.0%
TCCTTAGTCTGTTCAGGCTG+TGG - chr4_2:52161124-52161143 None:intergenic 50.0%
CCTCCAAACTGAACAGGTCA+AGG - chr4_2:52161313-52161332 None:intergenic 50.0%
CCTTGACCTGTTCAGTTTGG+AGG + chr4_2:52161310-52161329 Msa0606060:intron 50.0%
TGACCTGTTCAGTTTGGAGG+TGG + chr4_2:52161313-52161332 Msa0606060:intron 50.0%
CTTCCACCTCCAAACTGAAC+AGG - chr4_2:52161319-52161338 None:intergenic 50.0%
GGTGGAAGAACTATACGTCC+TGG + chr4_2:52161331-52161350 Msa0606060:CDS 50.0%
! GGTGACTTCTTAATGGACGC+GGG + chr4_2:52161790-52161809 Msa0606060:CDS 50.0%
AATGGACGCGGGAAAACTGA+AGG + chr4_2:52161801-52161820 Msa0606060:CDS 50.0%
TCCATGTAGCTCACTCTGCA+GGG - chr4_2:52162146-52162165 None:intergenic 50.0%
ATCCATGTAGCTCACTCTGC+AGG - chr4_2:52162147-52162166 None:intergenic 50.0%
! GTTATTTCAGACTGGGGACG+GGG + chr4_2:52162311-52162330 Msa0606060:intron 50.0%
TTATTTCAGACTGGGGACGG+GGG + chr4_2:52162312-52162331 Msa0606060:intron 50.0%
GGCTCACTTTGTCCGAAGAA+AGG - chr4_2:52164355-52164374 None:intergenic 50.0%
GACGATCCAAATTTGGACCC+AGG + chr4_2:52164467-52164486 Msa0606060:CDS 50.0%
AAGCCAGCTTGAGGATACTG+TGG + chr4_2:52164538-52164557 Msa0606060:CDS 50.0%
!! GAGCAAAACGGTGCTGATGG+AGG + chr4_2:52159970-52159989 Msa0606060:CDS 55.0%
!! CGGTGCTGATGGAGGGAAAA+AGG + chr4_2:52159978-52159997 Msa0606060:CDS 55.0%
!! ACCTATTTTGCATCGGCCGG+AGG + chr4_2:52160292-52160311 Msa0606060:intron 55.0%
ACCTCCGGCCGATGCAAAAT+AGG - chr4_2:52160296-52160315 None:intergenic 55.0%
! TTGCATCGGCCGGAGGTAAT+TGG + chr4_2:52160299-52160318 Msa0606060:intron 55.0%
! TGCATCGGCCGGAGGTAATT+GGG + chr4_2:52160300-52160319 Msa0606060:intron 55.0%
!! GGAGGGAGTGAGAGTACTTG+GGG + chr4_2:52160887-52160906 Msa0606060:CDS 55.0%
AAGACAAGGGGATTGCCACC+TGG + chr4_2:52161001-52161020 Msa0606060:CDS 55.0%
! CTCAGACGATGACTTGCCTG+AGG + chr4_2:52161048-52161067 Msa0606060:CDS 55.0%
! AGACGATGACTTGCCTGAGG+TGG + chr4_2:52161051-52161070 Msa0606060:CDS 55.0%
CCGACAATAAGCTCCACCTC+AGG - chr4_2:52161067-52161086 None:intergenic 55.0%
TATCCCGGTCGCGTTTGAAG+CGG - chr4_2:52164423-52164442 None:intergenic 55.0%
GGATGCAGAAAGCCAGCTTG+AGG + chr4_2:52164529-52164548 Msa0606060:CDS 55.0%
CTGCCACAGTATCCTCAAGC+TGG - chr4_2:52164544-52164563 None:intergenic 55.0%
AAGGGGATTGCCACCTGGAC+TGG + chr4_2:52161006-52161025 Msa0606060:CDS 60.0%
GCCCTGCAGAGTGAGCTACA+TGG + chr4_2:52162142-52162161 Msa0606060:intron 60.0%
GTGGCCGCTTCAAACGCGAC+CGG + chr4_2:52164416-52164435 Msa0606060:CDS 65.0%
TGGCCGCTTCAAACGCGACC+GGG + chr4_2:52164417-52164436 Msa0606060:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 52159661 52164751 52159661 ID=Msa0606060;Name=Msa0606060
chr4_2 mRNA 52159661 52164751 52159661 ID=Msa0606060-mRNA-1;Parent=Msa0606060;Name=Msa0606060-mRNA-1;_AED=0.15;_eAED=0.15;_QI=69|0.85|0.75|1|1|1|8|0|552
chr4_2 exon 52159661 52160087 52159661 ID=Msa0606060-mRNA-1:exon:12618;Parent=Msa0606060-mRNA-1
chr4_2 exon 52160879 52161219 52160879 ID=Msa0606060-mRNA-1:exon:12619;Parent=Msa0606060-mRNA-1
chr4_2 exon 52161325 52161477 52161325 ID=Msa0606060-mRNA-1:exon:12620;Parent=Msa0606060-mRNA-1
chr4_2 exon 52161778 52161870 52161778 ID=Msa0606060-mRNA-1:exon:12621;Parent=Msa0606060-mRNA-1
chr4_2 exon 52162151 52162209 52162151 ID=Msa0606060-mRNA-1:exon:12622;Parent=Msa0606060-mRNA-1
chr4_2 exon 52162573 52162666 52162573 ID=Msa0606060-mRNA-1:exon:12623;Parent=Msa0606060-mRNA-1
chr4_2 exon 52163436 52163579 52163436 ID=Msa0606060-mRNA-1:exon:12624;Parent=Msa0606060-mRNA-1
chr4_2 exon 52164335 52164751 52164335 ID=Msa0606060-mRNA-1:exon:12625;Parent=Msa0606060-mRNA-1
chr4_2 five_prime_UTR 52159661 52159729 52159661 ID=Msa0606060-mRNA-1:five_prime_utr;Parent=Msa0606060-mRNA-1
chr4_2 CDS 52159730 52160087 52159730 ID=Msa0606060-mRNA-1:cds;Parent=Msa0606060-mRNA-1
chr4_2 CDS 52160879 52161219 52160879 ID=Msa0606060-mRNA-1:cds;Parent=Msa0606060-mRNA-1
chr4_2 CDS 52161325 52161477 52161325 ID=Msa0606060-mRNA-1:cds;Parent=Msa0606060-mRNA-1
chr4_2 CDS 52161778 52161870 52161778 ID=Msa0606060-mRNA-1:cds;Parent=Msa0606060-mRNA-1
chr4_2 CDS 52162151 52162209 52162151 ID=Msa0606060-mRNA-1:cds;Parent=Msa0606060-mRNA-1
chr4_2 CDS 52162573 52162666 52162573 ID=Msa0606060-mRNA-1:cds;Parent=Msa0606060-mRNA-1
chr4_2 CDS 52163436 52163579 52163436 ID=Msa0606060-mRNA-1:cds;Parent=Msa0606060-mRNA-1
chr4_2 CDS 52164335 52164751 52164335 ID=Msa0606060-mRNA-1:cds;Parent=Msa0606060-mRNA-1
Gene Sequence

>Msa0606060

ATGGCTTCGTTATTATTACATTCTTCTTCTTCTTCTTCTTGTTCATGTTCATGGTTCTCTTCGTTGCGCATGAAACCAACAAGGTTAAAAACTAGGAAGCTGTGTTGTGTTATGAACCAAGAAAACAACAAGGAATCTTCTGAAGCTGAAAAAACTGCTTCTGTTGATCCTATAAAGCTTGCGTTTAATAAAGCTAAAGCTTATAAAGAATCGATTAAATCAAACTCTGGTTTGGGAATTGAGCAAAACGGTGCTGATGGAGGGAAAAAGGATTTGCCGGTTTCTGTGAAGATTGCAATGGAGAAGGCCAAAAAGTATAAGCAGAATAAAGAGGTTTCTGTTAGTGAAACTGATCAAGGATTGCAAGGAGGGAGTGAGAGTACTTGGGGAGAAAATGTGAATGACAATAGTGTTGGTAAGAAGGGAGAATTGTCTGTTTCAAAGATGGATTTTGTGGGGCTTGGCTTTTCGGACAAAAAGAAGACAAGGGGATTGCCACCTGGACTGGTTCCTTTTTCAGACTCCTTCTCAGACGATGACTTGCCTGAGGTGGAGCTTATTGTCGGAGATGCAAACAAATTTGATGCTACAACAACAGCTCCACAGCCTGAACAGACTAAGGATGATGAGTCAGAACTGTACAAGCCAAAAGTTTCTACATGGGGTGTATTTCCTAGACCTAACAATATTTCAAAAACATTTGGAGGTGGAAGAACTATACGTCCTGGGGAGATTTTAGAGAGTGAAGAAGAAAAGGCTGCTAAAGAAGCACGCACGAAGCAGATGCTTGCTGCTTACAAGAAGAAATATGGATTAAATATTGATCCAAAGCTAAAAATCGAATGCGAGGAGGCATTGAAGGATGGTGACTTCTTAATGGACGCGGGAAAACTGAAGGATGCTTTACCCTACTATGAGAAAGTCATTGACAAATTACCCTTCAAGAGTGAGCTACATGGATTAGCTGCTTTACAGTGGTCGATTTGTCAAGACTCCCTCAGTAGGCACAATGAAGCTCGAAGTATGTATGAAAAGCTTCAATCTCACCCAAGTGTTAAAGTAGGCAAGAAAGCAAGACAATTCATGTACAGCTTTCAGGCTATGGAAATGATGAAGGTTAGAACAAGATCTTCTCGTTATTCAAAGAACACATTTTACCAGAGTTATTTTGATGCATTTATCGAAAACAAATCAAACTACCCCGTTAAAGATGAAGTGGCTCAAGAAAGTGAAATCAATCAGGAACAATGTGTGTTGGTCCTTTCTTCGGACAAAGTGAGCCAACAAGCGACTCTAAAAGACCTGGCTATGATATCACTAAGGGTGGCCGCTTCAAACGCGACCGGGATACTATCCGATGTGAAAACGATGATCGACGATCCAAATTTGGACCCAGGAATTCAACAAGGTTTGGCTGATTGCAAGGAGACTTTATTGGATGCAGAAAGCCAGCTTGAGGATACTGTGGCAGCTCTTTTGTCAAATGCCAAACGTGATGCTCAATTATGGTTGCAAGCAGCTTTGGCTGCAATTGATACATGTGATGCTTCAATACCTGGTGATGATGATGTTCTCTCTACAAAGAGTCGAGCATTTCGTCAATTGTGCAACATTGCTGTTGCCGTTAATAAGGCTATGACAGATGATGATAAAGCCTAA

Protein sequence

>Msa0606060

MASLLLHSSSSSSCSCSWFSSLRMKPTRLKTRKLCCVMNQENNKESSEAEKTASVDPIKLAFNKAKAYKESIKSNSGLGIEQNGADGGKKDLPVSVKIAMEKAKKYKQNKEVSVSETDQGLQGGSESTWGENVNDNSVGKKGELSVSKMDFVGLGFSDKKKTRGLPPGLVPFSDSFSDDDLPEVELIVGDANKFDATTTAPQPEQTKDDESELYKPKVSTWGVFPRPNNISKTFGGGRTIRPGEILESEEEKAAKEARTKQMLAAYKKKYGLNIDPKLKIECEEALKDGDFLMDAGKLKDALPYYEKVIDKLPFKSELHGLAALQWSICQDSLSRHNEARSMYEKLQSHPSVKVGKKARQFMYSFQAMEMMKVRTRSSRYSKNTFYQSYFDAFIENKSNYPVKDEVAQESEINQEQCVLVLSSDKVSQQATLKDLAMISLRVAASNATGILSDVKTMIDDPNLDPGIQQGLADCKETLLDAESQLEDTVAALLSNAKRDAQLWLQAALAAIDTCDASIPGDDDVLSTKSRAFRQLCNIAVAVNKAMTDDDKA*