AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1334650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1334650 MtrunA17_Chr4g0072111 92.347 196 10 1 1 191 1 196 1.19e-109 311
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1334650 AT5G57345.1 57.754 187 72 3 5 191 9 188 9.02e-48 154

Find 71 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTTAATATAGATGTTTAA+AGG 0.274646 8_4:+55128249 Msa1334650:three_prime_UTR
ACATATGTGTGACCAATATT+TGG 0.311499 8_4:+55128285 Msa1334650:three_prime_UTR
GCCATACTATGGTGGTGGTT+GGG 0.312006 8_4:+55127998 Msa1334650:CDS
AACAATCTTCAACTCCATTA+AGG 0.317786 8_4:+55126130 Msa1334650:CDS
TGGTATTTGAGGGAGATAGA+AGG 0.318024 8_4:+55125915 Msa1334650:five_prime_UTR
CCTGGTGCAAAGAAAGAAAA+TGG 0.328053 8_4:-55128029 None:intergenic
ACCAATTCTACCACCAGTTT+TGG 0.337468 8_4:-55126327 None:intergenic
GAATTGTTATTGTTGATTCT+TGG 0.352408 8_4:-55126389 None:intergenic
CCCCAACCACCACCATAGTA+TGG 0.355295 8_4:-55127999 None:intergenic
AAGAAGAATGAGAACAAGTT+AGG 0.368246 8_4:+55126236 Msa1334650:CDS
TGCAGTTGTGAGGAAATTCT+TGG 0.380171 8_4:+55128124 Msa1334650:CDS
CCATACTATGGTGGTGGTTG+GGG 0.384922 8_4:+55127999 Msa1334650:CDS
CCTCCACTAGGTGGTGGATA+CGG 0.391006 8_4:+55127963 Msa1334650:CDS
TGCCATACTATGGTGGTGGT+TGG 0.397465 8_4:+55127997 Msa1334650:CDS
GATGATGATTACTAGCTTGT+TGG 0.412958 8_4:+55128170 Msa1334650:exon
TCCTGCTGCTCCTAAAAGTT+GGG 0.413791 8_4:-55126062 None:intergenic
TACGGTGGTGTGCCATACTA+TGG 0.417463 8_4:+55127987 Msa1334650:CDS
GAATCAACAATAACAATTCC+AGG 0.432239 8_4:+55126393 Msa1334650:CDS
TATCTCAAAAGACCAAATAT+TGG 0.436098 8_4:-55128297 None:intergenic
AATATAGATGTTTAAAGGAA+TGG 0.446403 8_4:+55128254 Msa1334650:three_prime_UTR
GATGCATCAGCTGCCAAAAC+TGG 0.451635 8_4:+55126314 Msa1334650:CDS
AGGAAAAGAGTTGGTATTTG+AGG 0.456509 8_4:+55125904 Msa1334650:five_prime_UTR
GTCCTGCTGCTCCTAAAAGT+TGG 0.462508 8_4:-55126063 None:intergenic
GCCAAAACTGGTGGTAGAAT+TGG 0.463723 8_4:+55126326 Msa1334650:CDS
CCACGGGTGGCGCCTCCACT+AGG 0.472801 8_4:+55127951 Msa1334650:CDS
GGAAAAGAGTTGGTATTTGA+GGG 0.474287 8_4:+55125905 Msa1334650:five_prime_UTR
ACTATGGTGGTGGTTGGGGA+TGG 0.480924 8_4:+55128003 Msa1334650:CDS
CTCCACTAGGTGGTGGATAC+GGG 0.491592 8_4:+55127964 Msa1334650:CDS
TTGTTGATTCTTGGTGAGGA+AGG 0.491949 8_4:-55126380 None:intergenic
GCTGCTGGTGTGTTAACGTT+TGG 0.494174 8_4:+55126281 Msa1334650:CDS
GCAATGATTGCAGTGGCTGC+TGG 0.497359 8_4:+55126266 Msa1334650:CDS
CCGAGTGTTGCAGTAGGCGT+TGG 0.513639 8_4:+55128053 Msa1334650:CDS
GTTGCAGTAGGCGTTGGAGG+TGG 0.519811 8_4:+55128059 Msa1334650:CDS
AGTGTTGCAGTAGGCGTTGG+AGG 0.520000 8_4:+55128056 Msa1334650:CDS
AAAGTTGGGTTAAGAAGTGT+TGG 0.530509 8_4:-55126048 None:intergenic
GTGGCGCCTCCACTAGGTGG+TGG 0.533635 8_4:+55127957 Msa1334650:CDS
AATTAAACTTATTTGTGACA+TGG 0.533737 8_4:+55125772 Msa1334650:five_prime_UTR
GCAGTTGTGAGGAAATTCTT+GGG 0.538440 8_4:+55128125 Msa1334650:CDS
CTAGGTGGTGGATACGGGTA+CGG 0.541215 8_4:+55127969 Msa1334650:CDS
GAAGTGTTGGTGAAGAGATG+AGG 0.545411 8_4:-55126035 None:intergenic
TGTTGATTCTTGGTGAGGAA+GGG 0.549367 8_4:-55126379 None:intergenic
CCGTGGATTTATATAGATGT+TGG 0.558960 8_4:-55127934 None:intergenic
CCTACTGCAACACTCGGACC+TGG 0.565214 8_4:-55128047 None:intergenic
GCGAGGAGCGGATGATCTGA+AGG 0.565349 8_4:-55126357 None:intergenic
GTGCTGCTGCTGCAGTTGTG+AGG 0.568041 8_4:+55128114 Msa1334650:CDS
CACGTGGCAACTCAAGAACC+AGG 0.584030 8_4:+55125884 Msa1334650:five_prime_UTR
CCAGGTCCGAGTGTTGCAGT+AGG 0.586325 8_4:+55128047 Msa1334650:CDS
GGAGTTGAAGATTGTTGTTG+TGG 0.590399 8_4:-55126123 None:intergenic
ATTCTTGGTGAGGAAGGGCG+AGG 0.590888 8_4:-55126374 None:intergenic
TCAAGAACCAGGAAAAGAGT+TGG 0.594806 8_4:+55125895 Msa1334650:five_prime_UTR
AAAACTGGTGGTAGAATTGG+TGG 0.598132 8_4:+55126329 Msa1334650:CDS
GAGGAAGCTTTGCTGTGACA+AGG 0.599879 8_4:-55126016 None:intergenic
TAGACGTAAATATGCATCAG+AGG 0.607892 8_4:-55128421 None:intergenic
CCAACGCCTACTGCAACACT+CGG 0.613463 8_4:-55128053 None:intergenic
GTTATTGTTGATTCTTGGTG+AGG 0.615397 8_4:-55126384 None:intergenic
CCAACATCTATATAAATCCA+CGG 0.616856 8_4:+55127934 Msa1334650:CDS
TGGTGAGGAAGGGCGAGGAG+CGG 0.629460 8_4:-55126369 None:intergenic
AGACGTAAATATGCATCAGA+GGG 0.631132 8_4:-55128420 None:intergenic
CAACATCTATATAAATCCAC+GGG 0.636919 8_4:+55127935 Msa1334650:CDS
GGTGTGCCATACTATGGTGG+TGG 0.643399 8_4:+55127993 Msa1334650:CDS
CGGGTGGCGCCTCCACTAGG+TGG 0.653412 8_4:+55127954 Msa1334650:CDS
AAAGTTAGCAATGATTGCAG+TGG 0.664147 8_4:+55126259 Msa1334650:CDS
CATCTATATAAATCCACGGG+TGG 0.671598 8_4:+55127938 Msa1334650:CDS
GGTGGTGGATACGGGTACGG+TGG 0.672411 8_4:+55127972 Msa1334650:CDS
GTTGTGAGGAAATTCTTGGG+AGG 0.683288 8_4:+55128128 Msa1334650:CDS
TACCCGTATCCACCACCTAG+TGG 0.684635 8_4:-55127966 None:intergenic
CAGCAGGACGAGGAAGACTG+TGG 0.702489 8_4:+55126077 Msa1334650:CDS
GCATCAGCTGCCAAAACTGG+TGG 0.706688 8_4:+55126317 Msa1334650:CDS
AAAATGGTAATTGTGGCACG+TGG 0.715975 8_4:+55125868 Msa1334650:five_prime_UTR
CCGTATCCACCACCTAGTGG+AGG 0.722573 8_4:-55127963 None:intergenic
GGTGGTGTGCCATACTATGG+TGG 0.778885 8_4:+55127990 Msa1334650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAGAAACAAAAAAAAT+TGG - chr8_4:55127576-55127595 None:intergenic 10.0%
!! TGATTATACTATATACTTAT+AGG + chr8_4:55126473-55126492 Msa1334650:intron 15.0%
!! TGTTTAATATAGATGTTTAA+AGG + chr8_4:55128249-55128268 Msa1334650:three_prime_UTR 15.0%
!! AATTAAACTTATTTGTGACA+TGG + chr8_4:55125772-55125791 Msa1334650:five_prime_UTR 20.0%
!! ACGCAAAAATAAAAACAAAA+TGG + chr8_4:55125852-55125871 Msa1334650:five_prime_UTR 20.0%
!! TAAAAACAAAATGGTAATTG+TGG + chr8_4:55125861-55125880 Msa1334650:five_prime_UTR 20.0%
!! ATAAACAAATAAGCAAAAAC+AGG + chr8_4:55125941-55125960 Msa1334650:five_prime_UTR 20.0%
!! AAGGAAAAATAAATGTTTCT+AGG + chr8_4:55126428-55126447 Msa1334650:intron 20.0%
!! TACAATTATCAACAAATACA+AGG - chr8_4:55126734-55126753 None:intergenic 20.0%
!!! TAGTTGTATTTTTCTTCTTT+GGG + chr8_4:55126841-55126860 Msa1334650:intron 20.0%
!!! TTCATTTTTGTTAGTTGTTT+AGG + chr8_4:55126903-55126922 Msa1334650:intron 20.0%
!!! TTTAGTCTTATTCTGAAAAT+AGG + chr8_4:55127540-55127559 Msa1334650:intron 20.0%
!!! TATTTTTATACAGACAATGT+TGG + chr8_4:55127590-55127609 Msa1334650:intron 20.0%
!! AATATGATCTCTAATGATAT+AGG - chr8_4:55127751-55127770 None:intergenic 20.0%
!! AATGAAATCTCTTTCATAAT+TGG + chr8_4:55127777-55127796 Msa1334650:intron 20.0%
!! AATATAGATGTTTAAAGGAA+TGG + chr8_4:55128254-55128273 Msa1334650:three_prime_UTR 20.0%
!! AATGTTTTTCCATCAGTTTT+TGG - chr8_4:55125717-55125736 None:intergenic 25.0%
!!! ATTTTTGTGTTGATAAAGCT+TGG - chr8_4:55125755-55125774 None:intergenic 25.0%
!! TTTTGATGTAGTTACCTTAA+TGG - chr8_4:55126147-55126166 None:intergenic 25.0%
!! TTTGCTTTGTTATACTTGAA+TGG + chr8_4:55126188-55126207 Msa1334650:intron 25.0%
!!! GAATTGTTATTGTTGATTCT+TGG - chr8_4:55126392-55126411 None:intergenic 25.0%
! TAATACTACCTAGAGAAAAT+AGG - chr8_4:55126542-55126561 None:intergenic 25.0%
! AGTTTAATTATGATACCTAC+GGG - chr8_4:55126694-55126713 None:intergenic 25.0%
! CAGTTTAATTATGATACCTA+CGG - chr8_4:55126695-55126714 None:intergenic 25.0%
!! GTAGTTGTATTTTTCTTCTT+TGG + chr8_4:55126840-55126859 Msa1334650:intron 25.0%
! TCATGTTTACGATATTAGTT+GGG + chr8_4:55126963-55126982 Msa1334650:intron 25.0%
! TTGTACATTTGGTTATACTT+CGG + chr8_4:55127002-55127021 Msa1334650:intron 25.0%
! ACTAAGGAGTTTATAAATGA+TGG - chr8_4:55127138-55127157 None:intergenic 25.0%
! TGACAAACAGGTAAATAAAA+AGG - chr8_4:55127240-55127259 None:intergenic 25.0%
! GTAGAAATATATCTGTTAGT+TGG + chr8_4:55127395-55127414 Msa1334650:intron 25.0%
! AAATCTCTTTCATAATTGGA+AGG + chr8_4:55127781-55127800 Msa1334650:intron 25.0%
! TATCTCAAAAGACCAAATAT+TGG - chr8_4:55128300-55128319 None:intergenic 25.0%
!! GTGTGAATACATTTTTCTAA+TGG + chr8_4:55128364-55128383 Msa1334650:three_prime_UTR 25.0%
! AAGGAACACATTTTTGATGT+CGG - chr8_4:55126000-55126019 None:intergenic 30.0%
AACAATCTTCAACTCCATTA+AGG + chr8_4:55126130-55126149 Msa1334650:CDS 30.0%
AAGAAGAATGAGAACAAGTT+AGG + chr8_4:55126236-55126255 Msa1334650:CDS 30.0%
GAATCAACAATAACAATTCC+AGG + chr8_4:55126393-55126412 Msa1334650:CDS 30.0%
TTCCAGGTATCTAACAAAAA+AGG + chr8_4:55126409-55126428 Msa1334650:intron 30.0%
!!! TTCCTTTTTTGTTAGATACC+TGG - chr8_4:55126414-55126433 None:intergenic 30.0%
CTAGAGAAAATAGGTTAGAA+TGG - chr8_4:55126533-55126552 None:intergenic 30.0%
! CATTCTAACCTATTTTCTCT+AGG + chr8_4:55126531-55126550 Msa1334650:intron 30.0%
GAATTCCAAAATTTGCATCA+AGG - chr8_4:55126604-55126623 None:intergenic 30.0%
CGTAGGTATCATAATTAAAC+TGG + chr8_4:55126693-55126712 Msa1334650:intron 30.0%
CTAACAAAAATGAAGACTTG+TGG - chr8_4:55126897-55126916 None:intergenic 30.0%
TGTTTGAACTTGAGTATTAG+AGG + chr8_4:55126937-55126956 Msa1334650:intron 30.0%
GTTTGAACTTGAGTATTAGA+GGG + chr8_4:55126938-55126957 Msa1334650:intron 30.0%
CAACTAATATCGTAAACATG+AGG - chr8_4:55126964-55126983 None:intergenic 30.0%
CTCATGTTTACGATATTAGT+TGG + chr8_4:55126962-55126981 Msa1334650:intron 30.0%
GGTTAAAAAGTTCGAACAAA+TGG + chr8_4:55127101-55127120 Msa1334650:intron 30.0%
GAAAAAAAGAAAGCCTCATT+TGG - chr8_4:55127218-55127237 None:intergenic 30.0%
! CTGTTTGTCACTTAGATATT+CGG + chr8_4:55127250-55127269 Msa1334650:intron 30.0%
!!! GATATTCGGTTTTTTCTTCT+AGG + chr8_4:55127264-55127283 Msa1334650:intron 30.0%
!! TGAAAGCGCTAAAATTTGAA+AGG - chr8_4:55127325-55127344 None:intergenic 30.0%
!! TTAGCGCTTTCATTTTGTTT+AGG + chr8_4:55127333-55127352 Msa1334650:intron 30.0%
!! TAGCGCTTTCATTTTGTTTA+GGG + chr8_4:55127334-55127353 Msa1334650:intron 30.0%
! GATATATTTCTACACTCCAT+TGG - chr8_4:55127388-55127407 None:intergenic 30.0%
AGTATGCGTTAGAAATTAAG+AGG - chr8_4:55127506-55127525 None:intergenic 30.0%
CCTTAAGTATATATCTCAGT+TGG - chr8_4:55127698-55127717 None:intergenic 30.0%
CCAACTGAGATATATACTTA+AGG + chr8_4:55127695-55127714 Msa1334650:intron 30.0%
CCAACATCTATATAAATCCA+CGG + chr8_4:55127934-55127953 Msa1334650:CDS 30.0%
CAACATCTATATAAATCCAC+GGG + chr8_4:55127935-55127954 Msa1334650:CDS 30.0%
!!! CTGCTTCTGTTTATGTTTTT+TGG + chr8_4:55128092-55128111 Msa1334650:CDS 30.0%
ACATATGTGTGACCAATATT+TGG + chr8_4:55128285-55128304 Msa1334650:three_prime_UTR 30.0%
! ATTTTTCTAATGGTGTCTCA+GGG + chr8_4:55128374-55128393 Msa1334650:three_prime_UTR 30.0%
! TCAAATACCAACTCTTTTCC+TGG - chr8_4:55125905-55125924 None:intergenic 35.0%
!! AGGAAAAGAGTTGGTATTTG+AGG + chr8_4:55125904-55125923 Msa1334650:five_prime_UTR 35.0%
!! GGAAAAGAGTTGGTATTTGA+GGG + chr8_4:55125905-55125924 Msa1334650:five_prime_UTR 35.0%
! AAAGTTGGGTTAAGAAGTGT+TGG - chr8_4:55126051-55126070 None:intergenic 35.0%
! CACTTCTTAACCCAACTTTT+AGG + chr8_4:55126052-55126071 Msa1334650:CDS 35.0%
AAAGTTAGCAATGATTGCAG+TGG + chr8_4:55126259-55126278 Msa1334650:CDS 35.0%
!! GTTATTGTTGATTCTTGGTG+AGG - chr8_4:55126387-55126406 None:intergenic 35.0%
TTCCAAAATTTGCATCAAGG+AGG - chr8_4:55126601-55126620 None:intergenic 35.0%
TGCAACTACAAACTATGCTT+AGG - chr8_4:55126626-55126645 None:intergenic 35.0%
ACAACAACTATAGCGACAAA+AGG - chr8_4:55126762-55126781 None:intergenic 35.0%
ACTAAAGAGGGTTGTACATT+TGG + chr8_4:55126991-55127010 Msa1334650:intron 35.0%
CAATGTTACCACACTCTATT+GGG - chr8_4:55127045-55127064 None:intergenic 35.0%
ACAATGTTACCACACTCTAT+TGG - chr8_4:55127046-55127065 None:intergenic 35.0%
GGTGAAAACAAGGAAAACTA+AGG - chr8_4:55127154-55127173 None:intergenic 35.0%
CGAAATTAAGAAGTCTCACT+CGG - chr8_4:55127175-55127194 None:intergenic 35.0%
CGAATATCTAAGTGACAAAC+AGG - chr8_4:55127252-55127271 None:intergenic 35.0%
!! AGTCCATTGGTTTGAACTAT+TGG - chr8_4:55127441-55127460 None:intergenic 35.0%
!! ATGGAGAATTTTGAGTCCAT+TGG - chr8_4:55127454-55127473 None:intergenic 35.0%
!!! ACATGGAAGCAGTTTTAAGT+AGG - chr8_4:55127664-55127683 None:intergenic 35.0%
! ACCTATCTGTCTCATTTTGT+TGG + chr8_4:55127870-55127889 Msa1334650:intron 35.0%
TCCAACAAAATGAGACAGAT+AGG - chr8_4:55127874-55127893 None:intergenic 35.0%
CCGTGGATTTATATAGATGT+TGG - chr8_4:55127937-55127956 None:intergenic 35.0%
! GATGATGATTACTAGCTTGT+TGG + chr8_4:55128170-55128189 Msa1334650:exon 35.0%
! CATTTTTCTAATGGTGTCTC+AGG + chr8_4:55128373-55128392 Msa1334650:three_prime_UTR 35.0%
AGACGTAAATATGCATCAGA+GGG - chr8_4:55128423-55128442 None:intergenic 35.0%
TAGACGTAAATATGCATCAG+AGG - chr8_4:55128424-55128443 None:intergenic 35.0%
AAAATGGTAATTGTGGCACG+TGG + chr8_4:55125868-55125887 Msa1334650:five_prime_UTR 40.0%
TCAAGAACCAGGAAAAGAGT+TGG + chr8_4:55125895-55125914 Msa1334650:five_prime_UTR 40.0%
TGGTATTTGAGGGAGATAGA+AGG + chr8_4:55125915-55125934 Msa1334650:five_prime_UTR 40.0%
! GGAGTTGAAGATTGTTGTTG+TGG - chr8_4:55126126-55126145 None:intergenic 40.0%
! ACCAATTCTACCACCAGTTT+TGG - chr8_4:55126330-55126349 None:intergenic 40.0%
AAAACTGGTGGTAGAATTGG+TGG + chr8_4:55126329-55126348 Msa1334650:CDS 40.0%
!! TGTTGATTCTTGGTGAGGAA+GGG - chr8_4:55126382-55126401 None:intergenic 40.0%
!! TTGTTGATTCTTGGTGAGGA+AGG - chr8_4:55126383-55126402 None:intergenic 40.0%
! CTCCTCCTTGATGCAAATTT+TGG + chr8_4:55126596-55126615 Msa1334650:intron 40.0%
!! GTTGTTGTTTGTCTCCTTGT+CGG + chr8_4:55126774-55126793 Msa1334650:intron 40.0%
! TGTACAACCCTCTTTAGTTC+AGG - chr8_4:55126989-55127008 None:intergenic 40.0%
GTGGTAACATTGTGAGTAGT+TGG + chr8_4:55127053-55127072 Msa1334650:intron 40.0%
! TTGGTGTTCTTAAGTGTAGC+AGG + chr8_4:55127072-55127091 Msa1334650:intron 40.0%
! TGTTCGAACTTTTTAACCGC+TGG - chr8_4:55127099-55127118 None:intergenic 40.0%
AAAGCCTCATTTGGACTTGA+GGG - chr8_4:55127209-55127228 None:intergenic 40.0%
! TTTTCTTCTAGGCTTGTGAG+AGG + chr8_4:55127275-55127294 Msa1334650:intron 40.0%
! CGCTAAAATTTGAAAGGTGC+AGG - chr8_4:55127319-55127338 None:intergenic 40.0%
TAGTTGGCATTCTCAAGAGT+AGG + chr8_4:55127411-55127430 Msa1334650:intron 40.0%
GGTCCAATAGTTCAAACCAA+TGG + chr8_4:55127435-55127454 Msa1334650:intron 40.0%
GTGGGAACATGGAAAAGTAA+TGG - chr8_4:55127473-55127492 None:intergenic 40.0%
!! AGTTGGTGAGATAAGAGACA+TGG - chr8_4:55127681-55127700 None:intergenic 40.0%
TTTCGTATCTGTATGTCGAC+AGG + chr8_4:55127910-55127929 Msa1334650:intron 40.0%
CATCTATATAAATCCACGGG+TGG + chr8_4:55127938-55127957 Msa1334650:CDS 40.0%
CCTGGTGCAAAGAAAGAAAA+TGG - chr8_4:55128032-55128051 None:intergenic 40.0%
! CCATTTTCTTTCTTTGCACC+AGG + chr8_4:55128029-55128048 Msa1334650:CDS 40.0%
TGCAGTTGTGAGGAAATTCT+TGG + chr8_4:55128124-55128143 Msa1334650:CDS 40.0%
GCAGTTGTGAGGAAATTCTT+GGG + chr8_4:55128125-55128144 Msa1334650:CDS 40.0%
!! GAAGTGTTGGTGAAGAGATG+AGG - chr8_4:55126038-55126057 None:intergenic 45.0%
TCCTGCTGCTCCTAAAAGTT+GGG - chr8_4:55126065-55126084 None:intergenic 45.0%
GCCAAAACTGGTGGTAGAAT+TGG + chr8_4:55126326-55126345 Msa1334650:CDS 45.0%
ATACCTACGGGCATCAATGT+CGG - chr8_4:55126682-55126701 None:intergenic 45.0%
TGAAGACTTCTGACCGTAAC+TGG + chr8_4:55126803-55126822 Msa1334650:intron 45.0%
GAAGACTTCTGACCGTAACT+GGG + chr8_4:55126804-55126823 Msa1334650:intron 45.0%
AGAGCAAGAAGACCCAGTTA+CGG - chr8_4:55126819-55126838 None:intergenic 45.0%
TAGTTGGGCCTGAACTAAAG+AGG + chr8_4:55126978-55126997 Msa1334650:intron 45.0%
AGTTGGGCCTGAACTAAAGA+GGG + chr8_4:55126979-55126998 Msa1334650:intron 45.0%
TCCAAAGACCCAATAGAGTG+TGG + chr8_4:55127034-55127053 Msa1334650:intron 45.0%
ACCACACTCTATTGGGTCTT+TGG - chr8_4:55127038-55127057 None:intergenic 45.0%
! AGTCTCACTCGGTGAAAACA+AGG - chr8_4:55127164-55127183 None:intergenic 45.0%
AAGCCTCATTTGGACTTGAG+GGG - chr8_4:55127208-55127227 None:intergenic 45.0%
GAAAGCCTCATTTGGACTTG+AGG - chr8_4:55127210-55127229 None:intergenic 45.0%
TGTTTAGGGACCAGTGAATG+AGG + chr8_4:55127348-55127367 Msa1334650:intron 45.0%
!! TTTCTACACTCCATTGGCTC+TGG - chr8_4:55127382-55127401 None:intergenic 45.0%
TTGGCATTCTCAAGAGTAGG+AGG + chr8_4:55127414-55127433 Msa1334650:intron 45.0%
GTTGTGAGGAAATTCTTGGG+AGG + chr8_4:55128128-55128147 Msa1334650:CDS 45.0%
!! CTTAAATATTATATATAAAT+AGG + chr8_4:55126213-55126232 Msa1334650:intron 5.0%
! GAGGAAGCTTTGCTGTGACA+AGG - chr8_4:55126019-55126038 None:intergenic 50.0%
!! ACCCAACTTTTAGGAGCAGC+AGG + chr8_4:55126061-55126080 Msa1334650:CDS 50.0%
GTCCTGCTGCTCCTAAAAGT+TGG - chr8_4:55126066-55126085 None:intergenic 50.0%
GCTGCTGGTGTGTTAACGTT+TGG + chr8_4:55126281-55126300 Msa1334650:CDS 50.0%
GATGCATCAGCTGCCAAAAC+TGG + chr8_4:55126314-55126333 Msa1334650:CDS 50.0%
! TTTGCATCAAGGAGGAGCGT+TGG - chr8_4:55126593-55126612 None:intergenic 50.0%
!! GTTTGTCTCCTTGTCGGCTT+TGG + chr8_4:55126780-55126799 Msa1334650:intron 50.0%
AGTCTTCACCAAAGCCGACA+AGG - chr8_4:55126791-55126810 None:intergenic 50.0%
CTTAAGTGTAGCAGGTCCAG+CGG + chr8_4:55127080-55127099 Msa1334650:intron 50.0%
AGCCTCATTTGGACTTGAGG+GGG - chr8_4:55127207-55127226 None:intergenic 50.0%
GGTATCAGAGCCTCATTCAC+TGG - chr8_4:55127361-55127380 None:intergenic 50.0%
TTTCCATGTTCCCACACGTG+TGG + chr8_4:55127478-55127497 Msa1334650:intron 50.0%
TTCCATGTTCCCACACGTGT+GGG + chr8_4:55127479-55127498 Msa1334650:intron 50.0%
TTAAGAGGTCCCACACGTGT+GGG - chr8_4:55127491-55127510 None:intergenic 50.0%
ATTAAGAGGTCCCACACGTG+TGG - chr8_4:55127492-55127511 None:intergenic 50.0%
TACGGTGGTGTGCCATACTA+TGG + chr8_4:55127987-55128006 Msa1334650:CDS 50.0%
!! TGCCATACTATGGTGGTGGT+TGG + chr8_4:55127997-55128016 Msa1334650:CDS 50.0%
!! GCCATACTATGGTGGTGGTT+GGG + chr8_4:55127998-55128017 Msa1334650:CDS 50.0%
!! CCATACTATGGTGGTGGTTG+GGG + chr8_4:55127999-55128018 Msa1334650:CDS 50.0%
CACGTGGCAACTCAAGAACC+AGG + chr8_4:55125884-55125903 Msa1334650:five_prime_UTR 55.0%
!! CTTTTAGGAGCAGCAGGACG+AGG + chr8_4:55126067-55126086 Msa1334650:CDS 55.0%
GCAATGATTGCAGTGGCTGC+TGG + chr8_4:55126266-55126285 Msa1334650:CDS 55.0%
GCATCAGCTGCCAAAACTGG+TGG + chr8_4:55126317-55126336 Msa1334650:CDS 55.0%
ATTCTTGGTGAGGAAGGGCG+AGG - chr8_4:55126377-55126396 None:intergenic 55.0%
TCCCCCCTCAAGTCCAAATG+AGG + chr8_4:55127202-55127221 Msa1334650:intron 55.0%
GCCTCATTTGGACTTGAGGG+GGG - chr8_4:55127206-55127225 None:intergenic 55.0%
! GGCTCTGATACCAGAGCCAA+TGG + chr8_4:55127369-55127388 Msa1334650:intron 55.0%
!! CCTCCACTAGGTGGTGGATA+CGG + chr8_4:55127963-55127982 Msa1334650:CDS 55.0%
!! CTCCACTAGGTGGTGGATAC+GGG + chr8_4:55127964-55127983 Msa1334650:CDS 55.0%
TACCCGTATCCACCACCTAG+TGG - chr8_4:55127969-55127988 None:intergenic 55.0%
!! CTAGGTGGTGGATACGGGTA+CGG + chr8_4:55127969-55127988 Msa1334650:CDS 55.0%
GGTGGTGTGCCATACTATGG+TGG + chr8_4:55127990-55128009 Msa1334650:CDS 55.0%
GGTGTGCCATACTATGGTGG+TGG + chr8_4:55127993-55128012 Msa1334650:CDS 55.0%
CCCCAACCACCACCATAGTA+TGG - chr8_4:55128002-55128021 None:intergenic 55.0%
!! ACTATGGTGGTGGTTGGGGA+TGG + chr8_4:55128003-55128022 Msa1334650:CDS 55.0%
CCAACGCCTACTGCAACACT+CGG - chr8_4:55128056-55128075 None:intergenic 55.0%
!! AGTGTTGCAGTAGGCGTTGG+AGG + chr8_4:55128056-55128075 Msa1334650:CDS 55.0%
CAGCAGGACGAGGAAGACTG+TGG + chr8_4:55126077-55126096 Msa1334650:CDS 60.0%
GCGAGGAGCGGATGATCTGA+AGG - chr8_4:55126360-55126379 None:intergenic 60.0%
CCTACGGGCATCAATGTCGG+AGG - chr8_4:55126679-55126698 None:intergenic 60.0%
CCTCCGACATTGATGCCCGT+AGG + chr8_4:55126676-55126695 Msa1334650:intron 60.0%
CTAGGCTTGTGAGAGGTCCC+TGG + chr8_4:55127282-55127301 Msa1334650:intron 60.0%
! GAAAGGTGCAGGTAGCCGCA+CGG - chr8_4:55127308-55127327 None:intergenic 60.0%
GTCCCACACGTGTGGGAACA+TGG - chr8_4:55127484-55127503 None:intergenic 60.0%
CCGTATCCACCACCTAGTGG+AGG - chr8_4:55127966-55127985 None:intergenic 60.0%
CCTACTGCAACACTCGGACC+TGG - chr8_4:55128050-55128069 None:intergenic 60.0%
! CCAGGTCCGAGTGTTGCAGT+AGG + chr8_4:55128047-55128066 Msa1334650:CDS 60.0%
! CCGAGTGTTGCAGTAGGCGT+TGG + chr8_4:55128053-55128072 Msa1334650:CDS 60.0%
!! GTTGCAGTAGGCGTTGGAGG+TGG + chr8_4:55128059-55128078 Msa1334650:CDS 60.0%
! GTGCTGCTGCTGCAGTTGTG+AGG + chr8_4:55128114-55128133 Msa1334650:CDS 60.0%
TGGTGAGGAAGGGCGAGGAG+CGG - chr8_4:55126372-55126391 None:intergenic 65.0%
!! GGTGGTGGATACGGGTACGG+TGG + chr8_4:55127972-55127991 Msa1334650:CDS 65.0%
GTGAGAGGTCCCTGGCCGTG+CGG + chr8_4:55127290-55127309 Msa1334650:intron 70.0%
TGCAGGTAGCCGCACGGCCA+GGG - chr8_4:55127302-55127321 None:intergenic 70.0%
GTGGCGCCTCCACTAGGTGG+TGG + chr8_4:55127957-55127976 Msa1334650:CDS 70.0%
GTGCAGGTAGCCGCACGGCC+AGG - chr8_4:55127303-55127322 None:intergenic 75.0%
!! CCTAGTGGAGGCGCCACCCG+TGG - chr8_4:55127954-55127973 None:intergenic 75.0%
CCACGGGTGGCGCCTCCACT+AGG + chr8_4:55127951-55127970 Msa1334650:CDS 75.0%
CGGGTGGCGCCTCCACTAGG+TGG + chr8_4:55127954-55127973 Msa1334650:CDS 75.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 55125707 55128472 55125707 ID=Msa1334650;Name=Msa1334650
chr8_4 mRNA 55125707 55128472 55125707 ID=Msa1334650-mRNA-1;Parent=Msa1334650;Name=Msa1334650-mRNA-1;_AED=0.02;_eAED=0.02;_QI=302|1|1|1|1|1|3|288|191
chr8_4 exon 55125707 55126151 55125707 ID=Msa1334650-mRNA-1:exon:17192;Parent=Msa1334650-mRNA-1
chr8_4 exon 55126235 55126414 55126235 ID=Msa1334650-mRNA-1:exon:17193;Parent=Msa1334650-mRNA-1
chr8_4 exon 55127932 55128472 55127932 ID=Msa1334650-mRNA-1:exon:17194;Parent=Msa1334650-mRNA-1
chr8_4 five_prime_UTR 55125707 55126008 55125707 ID=Msa1334650-mRNA-1:five_prime_utr;Parent=Msa1334650-mRNA-1
chr8_4 CDS 55126009 55126151 55126009 ID=Msa1334650-mRNA-1:cds;Parent=Msa1334650-mRNA-1
chr8_4 CDS 55126235 55126414 55126235 ID=Msa1334650-mRNA-1:cds;Parent=Msa1334650-mRNA-1
chr8_4 CDS 55127932 55128184 55127932 ID=Msa1334650-mRNA-1:cds;Parent=Msa1334650-mRNA-1
chr8_4 three_prime_UTR 55128185 55128472 55128185 ID=Msa1334650-mRNA-1:three_prime_utr;Parent=Msa1334650-mRNA-1
Gene Sequence

>Msa1334650

ATGTGTTCCTTGTCACAGCAAAGCTTCCTCATCTCTTCACCAACACTTCTTAACCCAACTTTTAGGAGCAGCAGGACGAGGAAGACTGTGGTTGTCTACTGCAGTTGCACACAGCCACAACAACAATCTTCAACTCCATTAAGGAAGAAGAATGAGAACAAGTTAGGAAAGTTAGCAATGATTGCAGTGGCTGCTGGTGTGTTAACGTTTGGATCAGTTCATGATGCATCAGCTGCCAAAACTGGTGGTAGAATTGGTGGTCAGTCCTTCAGATCATCCGCTCCTCGCCCTTCCTCACCAAGAATCAACAATAACAATTCCAGGACCAACATCTATATAAATCCACGGGTGGCGCCTCCACTAGGTGGTGGATACGGGTACGGTGGTGTGCCATACTATGGTGGTGGTTGGGGATGGTCTCCATTTTCTTTCTTTGCACCAGGTCCGAGTGTTGCAGTAGGCGTTGGAGGTGGATTTGATACTCTGCTTCTGTTTATGTTTTTTGGTGCTGCTGCTGCAGTTGTGAGGAAATTCTTGGGAGGATCAAGAAATGTTGATGATGATGATGATTACTAG

Protein sequence

>Msa1334650

MCSLSQQSFLISSPTLLNPTFRSSRTRKTVVVYCSCTQPQQQSSTPLRKKNENKLGKLAMIAVAAGVLTFGSVHDASAAKTGGRIGGQSFRSSAPRPSSPRINNNNSRTNIYINPRVAPPLGGGYGYGGVPYYGGGWGWSPFSFFAPGPSVAVGVGGGFDTLLLFMFFGAAAAVVRKFLGGSRNVDDDDDY*