AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0465510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0465510 MtrunA17_Chr3g0117751 96.984 630 10 1 1 621 1 630 0.0 1255
Msa0465510 MtrunA17_Chr4g0049841 38.574 617 301 15 69 621 106 708 2.21e-126 389
Msa0465510 MtrunA17_Chr4g0059151 52.128 94 42 2 228 321 1 91 4.52e-18 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0465510 AT1G27510.1 57.219 561 221 7 77 621 94 651 0.0 610
Msa0465510 AT4G33630.1 37.225 591 303 16 74 619 115 682 1.14e-107 340
Msa0465510 AT4G33630.2 37.225 591 303 16 74 619 115 682 1.14e-107 340
Msa0465510 AT4G33630.3 37.225 591 303 16 74 619 115 682 1.14e-107 340

Find 220 sgRNAs with CRISPR-Local

Find 463 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAAGGTGGGTGGTTTATT+AGG 0.161975 3_3:+65917868 None:intergenic
CTGATGTTGCTAAGGCCTTT+TGG 0.172201 3_3:-65914857 Msa0465510:CDS
CCCCATCTTTACTTGCTAAA+AGG 0.204998 3_3:-65915439 Msa0465510:CDS
AAGAAGCAGCAAAGCTAAAA+AGG 0.212205 3_3:-65916919 Msa0465510:CDS
GTCCAATTGAGACGAAAATT+TGG 0.216706 3_3:-65913694 Msa0465510:CDS
GGGGAATTGCTTCAACTTAA+TGG 0.218721 3_3:-65912564 Msa0465510:CDS
AATTCCCCATCAACCCATTT+TGG 0.219963 3_3:+65912579 None:intergenic
ACCACATAAATTTCAAATAA+TGG 0.225854 3_3:+65915889 None:intergenic
GGGATCCTTTATGTGCATTA+TGG 0.255430 3_3:-65912043 Msa0465510:three_prime_UTR
TTAGATATGAAGCTCTTTAT+TGG 0.256773 3_3:-65915080 Msa0465510:CDS
CTCTCCTCAACCTTGTCTTC+AGG 0.264597 3_3:+65915368 None:intergenic
GACAATTTCACGCATGCTTT+TGG 0.267932 3_3:+65913947 None:intergenic
ACAATACATCGTCTCTTAAC+TGG 0.281251 3_3:-65917762 Msa0465510:CDS
CAATTTCGGTTTGGCTAGTT+TGG 0.285890 3_3:-65911615 Msa0465510:three_prime_UTR
GGACTCTATGTTGGTGCATT+TGG 0.288125 3_3:-65913736 Msa0465510:CDS
CTTTATGTGCATTATGGTTA+TGG 0.295677 3_3:-65912037 Msa0465510:three_prime_UTR
GTGACATTCCGTGCTAAAAT+TGG 0.301622 3_3:-65913448 Msa0465510:CDS
TGTTGTTTGTGACAAGGTTT+TGG 0.303471 3_3:+65917980 None:intergenic
GTTGGTGCATTTGGACCTTA+TGG 0.309966 3_3:-65913727 Msa0465510:CDS
CGATGTATTGTTGGTGGAAT+TGG 0.318703 3_3:+65917774 None:intergenic
TTTGTTGTGCTGTTGTGTTT+TGG 0.321795 3_3:+65918074 None:intergenic
GAACCTTCTTAAAACTCTTC+TGG 0.328947 3_3:-65911876 Msa0465510:three_prime_UTR
AAAAGGTGGGTGGTTTATTA+GGG 0.341547 3_3:+65917869 None:intergenic
AAACAGAATGCAAGTTATAA+AGG 0.347493 3_3:-65912636 Msa0465510:intron
CTGTGTGCCTTCTTGTTTGT+GGG 0.355176 3_3:-65912014 Msa0465510:three_prime_UTR
AATGAAGCCATCACCATGTT+TGG 0.356586 3_3:+65917955 None:intergenic
CCACAAGTATTACTATATAT+AGG 0.357102 3_3:+65911524 None:intergenic
CGAAATCCAAAATGGGTTGA+TGG 0.365952 3_3:-65912585 Msa0465510:CDS
AGCCAAACCGAAATTGATAT+CGG 0.371511 3_3:+65911622 None:intergenic
GTTACTCGTTGAATTTCCTT+TGG 0.371590 3_3:+65915466 None:intergenic
TGGACTGTATCCTGATGAAT+TGG 0.374202 3_3:-65913401 Msa0465510:CDS
CAATGAAGATAATTCTTCTA+AGG 0.375818 3_3:-65915042 Msa0465510:CDS
TGCAGGTGGGTTGGTGGGTA+GGG 0.377171 3_3:-65916100 Msa0465510:intron
ATGCAGGTGGGTTGGTGGGT+AGG 0.378183 3_3:-65916101 Msa0465510:intron
CAGTTGCTCACGGCATCTAC+TGG 0.378276 3_3:-65915916 Msa0465510:CDS
CACAAGTATTACTATATATA+GGG 0.381048 3_3:+65911525 None:intergenic
GGTGATGTGTAGAGATAAAA+AGG 0.383930 3_3:-65911503 Msa0465510:three_prime_UTR
ATTATTTAGTCTTAAAAGAA+AGG 0.384034 3_3:-65911753 Msa0465510:three_prime_UTR
CCCCGATATCAATTTCGGTT+TGG 0.384243 3_3:-65911624 Msa0465510:three_prime_UTR
TGAAATTATGTCTCAGTTGA+AGG 0.389115 3_3:-65916861 Msa0465510:intron
CTTGAAAAGACTGAGATTGA+AGG 0.401489 3_3:+65917832 None:intergenic
CACATGAAAGGAGCAGATCT+TGG 0.407586 3_3:-65912399 Msa0465510:CDS
AAACATGGTGATGGCTTCAT+TGG 0.410574 3_3:-65917953 Msa0465510:exon
TTGAGTTGGCCTGGTGGTGT+TGG 0.413303 3_3:-65911694 Msa0465510:three_prime_UTR
ATACGTATTATTCTACCAAA+AGG 0.416476 3_3:+65916056 None:intergenic
ACATATGATAACATAGAGAT+TGG 0.417262 3_3:+65912123 None:intergenic
TTCTGCTGTGTTTAGGGCAT+GGG 0.420342 3_3:-65912426 Msa0465510:intron
CATCGTCTCTTAACTGGGAT+TGG 0.420968 3_3:-65917756 Msa0465510:CDS
TTCTGATAAAGTCTCTTCTA+AGG 0.422012 3_3:-65914832 Msa0465510:intron
CTTCCCTGACGTTGGTGGGT+TGG 0.425330 3_3:-65912284 Msa0465510:three_prime_UTR
CTTTCTTCCCTGACGTTGGT+GGG 0.425639 3_3:-65912288 Msa0465510:three_prime_UTR
CCATTTCGATGATATTGAAC+AGG 0.427605 3_3:-65917719 Msa0465510:CDS
TTTGATGCAGGCAGAATACC+TGG 0.427706 3_3:+65911986 None:intergenic
CATAACCATAATGCACATAA+AGG 0.433042 3_3:+65912038 None:intergenic
TTTGCTCGGGCACAGCATAA+AGG 0.436923 3_3:+65912373 None:intergenic
ATTGTCCCCGATATCAATTT+CGG 0.437735 3_3:-65911629 Msa0465510:three_prime_UTR
ATGGTAGCGCTCATCGTCTA+TGG 0.438503 3_3:+65916747 None:intergenic
TGATGGGGAAGATGATAATC+TGG 0.438817 3_3:-65915162 Msa0465510:CDS
AGGAGCTATAGAAAGACCTT+AGG 0.444366 3_3:-65912064 Msa0465510:three_prime_UTR
AATTTCAGCAACACTATCCT+TGG 0.446349 3_3:+65916877 None:intergenic
GATTCTAGAGTGACCTCATC+AGG 0.448858 3_3:+65915134 None:intergenic
GAAGACAAATTCTCAACCTC+TGG 0.449834 3_3:+65915407 None:intergenic
AATACGTATTAGTCCTGGTA+TGG 0.450044 3_3:-65916042 Msa0465510:CDS
CCCCTCTGGGACTTGCAATC+CGG 0.451843 3_3:+65913865 None:intergenic
TTTACCACTCCCAATTCATC+AGG 0.451893 3_3:+65913391 None:intergenic
CCGGTTAAAATATGTATCTT+CGG 0.453570 3_3:+65913884 None:intergenic
TACTCCAACCCACCAACGTC+AGG 0.455413 3_3:+65912280 None:intergenic
TCTTTCTTCCCTGACGTTGG+TGG 0.456581 3_3:-65912289 Msa0465510:three_prime_UTR
TCTTAATGTTCCTGCAGGCC+AGG 0.458683 3_3:-65913587 Msa0465510:intron
CCTGTTCAATATCATCGAAA+TGG 0.458726 3_3:+65917719 None:intergenic
TGTTGAAGAGGAAGCAAGAG+AGG 0.459335 3_3:-65915231 Msa0465510:CDS
CAGGGAAGAAAGAAATTTGA+AGG 0.462451 3_3:+65912299 None:intergenic
TGGACTATTTCGATGCCATA+AGG 0.462771 3_3:+65913712 None:intergenic
GCTGTGTGCCTTCTTGTTTG+TGG 0.463974 3_3:-65912015 Msa0465510:three_prime_UTR
AAAGAATGTGGTTAAAGTAT+TGG 0.466373 3_3:-65911575 Msa0465510:three_prime_UTR
GTTAAGAGACGATGTATTGT+TGG 0.473042 3_3:+65917765 None:intergenic
GCAAATGTTAGTCTGTTAGT+AGG 0.473639 3_3:-65911927 Msa0465510:three_prime_UTR
GTGGTGTTGGCTTAAGACCT+TGG 0.473768 3_3:-65911681 Msa0465510:three_prime_UTR
CAGGGGAGAATAGCAGACTT+TGG 0.477233 3_3:-65912612 Msa0465510:CDS
TTCTCCTAGGTATATGTAAG+AGG 0.477355 3_3:+65914967 None:intergenic
TGTTGTTAAATCACTTGAGT+TGG 0.479925 3_3:-65911708 Msa0465510:three_prime_UTR
CAATATCAAAGTGGCAGCAC+TGG 0.480476 3_3:-65914910 Msa0465510:CDS
TCTTGTTTGTGGGAAGTCCC+AGG 0.481587 3_3:-65912004 Msa0465510:three_prime_UTR
CTAGCGGCTTCCTTTGATGC+AGG 0.482036 3_3:+65911974 None:intergenic
TTCTCAACCTCTGGTTTCGA+TGG 0.484470 3_3:+65915416 None:intergenic
GCCAAACCGAAATTGATATC+GGG 0.484514 3_3:+65911623 None:intergenic
GACTTTATCAGAACCCCAAA+AGG 0.484724 3_3:+65914842 None:intergenic
GAAATCCAAAATGGGTTGAT+GGG 0.485558 3_3:-65912584 Msa0465510:CDS
CTTACTCAGGTAGTTTCAAT+CGG 0.485754 3_3:+65912331 None:intergenic
TCCATGTTCTTTATTTCCGC+TGG 0.487068 3_3:+65915002 None:intergenic
AGGTATTCTGCCTGCATCAA+AGG 0.487215 3_3:-65911984 Msa0465510:three_prime_UTR
GAAAGGATCAAAATCCCCTC+TGG 0.488511 3_3:+65913851 None:intergenic
ATTGAAACGTGAAGGGGTTG+TGG 0.488962 3_3:+65917897 None:intergenic
TTATGCAGATACACTGGAAG+TGG 0.490425 3_3:-65916712 Msa0465510:CDS
GCCATTATTTGAAATTTATG+TGG 0.490547 3_3:-65915890 Msa0465510:CDS
TGAGACGAAAATTTGGACAT+TGG 0.493193 3_3:-65913687 Msa0465510:CDS
TACTGACAAAACAGTGTGCC+AGG 0.496504 3_3:-65912084 Msa0465510:three_prime_UTR
TGATTCTATTAAACAAATCA+TGG 0.497999 3_3:-65915204 Msa0465510:CDS
GAATGCAAGTTATAAAGGCC+AGG 0.498164 3_3:-65912631 Msa0465510:CDS
TGATGCCTCGGATGAAGAAA+AGG 0.498997 3_3:-65915105 Msa0465510:CDS
TTAAATCACTTGAGTTGGCC+TGG 0.499949 3_3:-65911703 Msa0465510:three_prime_UTR
GCATAAACCACCTGGCCTGC+AGG 0.501097 3_3:+65913577 None:intergenic
TTGAAAAGACTGAGATTGAA+GGG 0.502014 3_3:+65917833 None:intergenic
TATGCCTTCTGATGTTGCTA+AGG 0.502960 3_3:-65914865 Msa0465510:CDS
TATGAACATTAATGTTGAAG+AGG 0.506769 3_3:-65915243 Msa0465510:CDS
TACGTATTATTCTACCAAAA+GGG 0.507649 3_3:+65916057 None:intergenic
TAAGGTCTTTCTATAGCTCC+TGG 0.509013 3_3:+65912066 None:intergenic
GGAAATAAAGAACATGGAAA+GGG 0.510999 3_3:-65914997 Msa0465510:CDS
GTTAGAGAAGAAGATGGCTT+GGG 0.512099 3_3:+65917924 None:intergenic
TGTTAGAGAAGAAGATGGCT+TGG 0.512484 3_3:+65917923 None:intergenic
CCAACGAACCTGCCCATACC+AGG 0.513196 3_3:+65916029 None:intergenic
GAAGATGGTAATAAAACTGA+TGG 0.516351 3_3:-65915179 Msa0465510:CDS
TAGCTCGGTTGGTGCATTGA+GGG 0.518283 3_3:+65911850 None:intergenic
GTTGGTGGGTTGGAGTATGA+AGG 0.520129 3_3:-65912274 Msa0465510:three_prime_UTR
CGGAAATAAAGAACATGGAA+AGG 0.521393 3_3:-65914998 Msa0465510:CDS
GGGGATCTTAATGTTCCTGC+AGG 0.523907 3_3:-65913592 Msa0465510:CDS
GATATGAAGCTCTTTATTGG+CGG 0.526968 3_3:-65915077 Msa0465510:CDS
GTAGAGGCAGTAAAATTGAC+TGG 0.527358 3_3:-65913613 Msa0465510:CDS
CATATGATAACATAGAGATT+GGG 0.528542 3_3:+65912124 None:intergenic
CCTGGTATGGGCAGGTTCGT+TGG 0.529200 3_3:-65916029 Msa0465510:CDS
ACTATCGCTCAATCAAGAAA+AGG 0.530223 3_3:+65912222 None:intergenic
GTTGAAGAGGAAGCAAGAGA+GGG 0.534106 3_3:-65915230 Msa0465510:CDS
CAATACATCGTCTCTTAACT+GGG 0.534408 3_3:-65917761 Msa0465510:CDS
TAGCACAAGAAAACTTTGCT+CGG 0.535045 3_3:+65912359 None:intergenic
TGAGAATTTGTCTTCAGTTG+AGG 0.535965 3_3:-65915399 Msa0465510:CDS
GGAGCTATAGAAAGACCTTA+GGG 0.537298 3_3:-65912063 Msa0465510:three_prime_UTR
GGAGAAATCTCGATAATGAC+AGG 0.537424 3_3:-65914950 Msa0465510:CDS
AAACAAATCATGGAGGAAGA+TGG 0.541939 3_3:-65915194 Msa0465510:CDS
TGGAGAAGATGAAGATGCAA+TGG 0.542322 3_3:+65918000 None:intergenic
TGGTGGTGCATCGTAGAAAG+TGG 0.543062 3_3:+65917794 None:intergenic
AGAATCTGACGGTGATGCCT+CGG 0.543268 3_3:-65915117 Msa0465510:CDS
AACATGGTGATGGCTTCATT+GGG 0.543898 3_3:-65917952 Msa0465510:CDS
AAGATGGTAATAAAACTGAT+GGG 0.547404 3_3:-65915178 Msa0465510:CDS
TGTATTGTTGGTGGAATTGG+TGG 0.547777 3_3:+65917777 None:intergenic
ATTTCTTTCTTCCCTGACGT+TGG 0.549004 3_3:-65912292 Msa0465510:three_prime_UTR
CAATGTTGAGGCGGCAACTG+AGG 0.550842 3_3:-65915327 Msa0465510:CDS
CAAAGTCTGCTATTCTCCCC+TGG 0.551350 3_3:+65912613 None:intergenic
AAGAGACGATGTATTGTTGG+TGG 0.552898 3_3:+65917768 None:intergenic
TCAAAATTATGCAGATACAC+TGG 0.555623 3_3:-65916718 Msa0465510:CDS
GGGTGAAGATTGAAACGTGA+AGG 0.559091 3_3:+65917889 None:intergenic
AGCACAAGAAAACTTTGCTC+GGG 0.559857 3_3:+65912360 None:intergenic
AATAAAACTTTAATTACTAG+CGG 0.560665 3_3:+65911958 None:intergenic
TTAACTGGGATTGGAATCGT+TGG 0.561945 3_3:-65917747 Msa0465510:CDS
AGAATAATACGTATTAGTCC+TGG 0.563260 3_3:-65916047 Msa0465510:CDS
GGTGGTGCATCGTAGAAAGT+GGG 0.563572 3_3:+65917795 None:intergenic
TTTATTTATCGCCGTGCGCG+TGG 0.563616 3_3:-65918114 Msa0465510:five_prime_UTR
GGTGAAGATTGAAACGTGAA+GGG 0.564363 3_3:+65917890 None:intergenic
ATTGCTTCAACTTAATGGCA+AGG 0.564516 3_3:-65912559 Msa0465510:intron
TTGGCAAGAGTTACAGTCCA+AGG 0.564564 3_3:-65916010 Msa0465510:intron
GTTGAGGCGGCAACTGAGGA+TGG 0.566825 3_3:-65915323 Msa0465510:CDS
AGTTGCTCACGGCATCTACT+GGG 0.567853 3_3:-65915915 Msa0465510:CDS
GTGTATTTGCGACGAGCCAA+AGG 0.568572 3_3:-65915482 Msa0465510:CDS
GGTCTTAAGCCAACACCACC+AGG 0.569425 3_3:+65911685 None:intergenic
AAAGGATCAAAATCCCCTCT+GGG 0.570948 3_3:+65913852 None:intergenic
AGATCTGCTCCTTTCATGTG+TGG 0.571340 3_3:+65912402 None:intergenic
GGACTGTATCCTGATGAATT+GGG 0.571701 3_3:-65913400 Msa0465510:CDS
CTTTCCTCTTACATATACCT+AGG 0.573230 3_3:-65914971 Msa0465510:CDS
CACAAACAACAAACCAAACA+TGG 0.573403 3_3:-65917968 Msa0465510:exon
GTATTAGTCCTGGTATGGGC+AGG 0.574333 3_3:-65916037 Msa0465510:CDS
TCATTATCGAGATTTCTCCT+AGG 0.575590 3_3:+65914954 None:intergenic
ACCGGATTGCAAGTCCCAGA+GGG 0.577368 3_3:-65913866 Msa0465510:CDS
AAGCTTTGCATCTCTTCTCA+AGG 0.579029 3_3:-65917692 Msa0465510:intron
CTAGTCTCGCGTAGATAGCT+CGG 0.579515 3_3:+65911835 None:intergenic
TTGGTTTGTTGTTTGTGACA+AGG 0.579568 3_3:+65917974 None:intergenic
AATGCAAGTTATAAAGGCCA+GGG 0.581602 3_3:-65912630 Msa0465510:CDS
AGGGAAGAAAGAAATTTGAA+GGG 0.586434 3_3:+65912300 None:intergenic
TAGAGGCAGTAAAATTGACT+GGG 0.586779 3_3:-65913612 Msa0465510:CDS
ATTTGGACATTGGAATGATG+TGG 0.588530 3_3:-65913677 Msa0465510:CDS
ATAGCTCGGTTGGTGCATTG+AGG 0.591650 3_3:+65911849 None:intergenic
TCCAGCGGAAATAAAGAACA+TGG 0.592636 3_3:-65915003 Msa0465510:CDS
CAGATACACTGGAAGTGGAC+TGG 0.592729 3_3:-65916707 Msa0465510:intron
ATACGTATTAGTCCTGGTAT+GGG 0.594549 3_3:-65916041 Msa0465510:CDS
GTTTGAAGAAGATTGAGACA+AGG 0.594559 3_3:+65918030 None:intergenic
GGTTGTGTTAGAGAAGAAGA+TGG 0.598527 3_3:+65917918 None:intergenic
TGACGACACATATCATATGC+AGG 0.602020 3_3:-65915857 Msa0465510:intron
AGAACCTGAAGACAAGGTTG+AGG 0.605973 3_3:-65915372 Msa0465510:CDS
GTCAACCGCAACGCCAACCG+TGG 0.607012 3_3:-65913421 Msa0465510:CDS
GGGACTTCCCACAAACAAGA+AGG 0.607023 3_3:+65912007 None:intergenic
CAACAAACCAAACATGGTGA+TGG 0.608461 3_3:-65917962 Msa0465510:exon
ATAACTTTGACTTTCAACCC+TGG 0.608548 3_3:+65915263 None:intergenic
GGCATGGGACCACACATGAA+AGG 0.609118 3_3:-65912411 Msa0465510:CDS
ATATATAGGGATCGATGTTG+AGG 0.609492 3_3:+65911538 None:intergenic
TAAAGTTCGCAATATCAAAG+TGG 0.611705 3_3:-65914919 Msa0465510:CDS
AAGGCCTTAGCAACATCAGA+AGG 0.612039 3_3:+65914861 None:intergenic
CCTATATATAGTAATACTTG+TGG 0.618654 3_3:-65911524 Msa0465510:three_prime_UTR
ATAATAGAGTTGCGTATCTG+TGG 0.619138 3_3:-65911797 Msa0465510:three_prime_UTR
ATCGAACATAAGATCTTGAG+AGG 0.619247 3_3:+65911650 None:intergenic
AAATCCAAAATGGGTTGATG+GGG 0.623944 3_3:-65912583 Msa0465510:CDS
ATCAGGATACAGTCCACGGT+TGG 0.625330 3_3:+65913408 None:intergenic
TATAGTTGAAGCGACATCCA+AGG 0.625332 3_3:-65916894 Msa0465510:CDS
ACAGTCCACGGTTGGCGTTG+CGG 0.626828 3_3:+65913416 None:intergenic
TAAGCCAACTCACCGTCGAA+AGG 0.627500 3_3:+65913834 None:intergenic
GTGGCAGCACTGGCAGCACA+AGG 0.629400 3_3:-65914900 Msa0465510:CDS
ATGCACATAAAGGATCCCTA+AGG 0.630826 3_3:+65912048 None:intergenic
TCTCGCGTAGATAGCTCGGT+TGG 0.630897 3_3:+65911839 None:intergenic
GAGGTCACTCTAGAATCTGA+CGG 0.632779 3_3:-65915128 Msa0465510:CDS
CTTGAGAGGAGCAAACTCCA+AGG 0.634030 3_3:+65911664 None:intergenic
TAAAATGCAGGACTCTATGT+TGG 0.634434 3_3:-65913745 Msa0465510:intron
GTATCCTGATGAATTGGGAG+TGG 0.636503 3_3:-65913395 Msa0465510:intron
TGGTGCATCGTAGAAAGTGG+GGG 0.639644 3_3:+65917797 None:intergenic
GTGGTGCATCGTAGAAAGTG+GGG 0.640512 3_3:+65917796 None:intergenic
ATACTATAGACAGTTGCTCA+CGG 0.641183 3_3:-65915926 Msa0465510:intron
CCAAACCGAAATTGATATCG+GGG 0.646404 3_3:+65911624 None:intergenic
ACTCCAACCCACCAACGTCA+GGG 0.651545 3_3:+65912281 None:intergenic
TGAATTTATACGTCTTCCAG+CGG 0.652090 3_3:-65915018 Msa0465510:CDS
GAAATTATAAAGGCATCGTG+AGG 0.653656 3_3:+65912164 None:intergenic
AGATGGTAATAAAACTGATG+GGG 0.654724 3_3:-65915177 Msa0465510:CDS
ATTCATCAGGATACAGTCCA+CGG 0.657204 3_3:+65913404 None:intergenic
GGTGCAAGAACCTGAAGACA+AGG 0.663351 3_3:-65915378 Msa0465510:CDS
TTGATGCAGGCAGAATACCT+GGG 0.663906 3_3:+65911987 None:intergenic
GGTGCATCGTAGAAAGTGGG+GGG 0.665072 3_3:+65917798 None:intergenic
AACCGGATTGCAAGTCCCAG+AGG 0.666112 3_3:-65913867 Msa0465510:CDS
TAATCTGGATGAACCTGATG+AGG 0.667712 3_3:-65915147 Msa0465510:CDS
AATCACTTGAGTTGGCCTGG+TGG 0.675244 3_3:-65911700 Msa0465510:three_prime_UTR
CCGGATTGCAAGTCCCAGAG+GGG 0.701896 3_3:-65913865 Msa0465510:CDS
GTGAAGATTGAAACGTGAAG+GGG 0.702867 3_3:+65917891 None:intergenic
ATGCAAGTTATAAAGGCCAG+GGG 0.705064 3_3:-65912629 Msa0465510:CDS
TAAAAGGCCATCGAAACCAG+AGG 0.713071 3_3:-65915423 Msa0465510:CDS
TTCTATTAAACAAATCATGG+AGG 0.716498 3_3:-65915201 Msa0465510:CDS
AGAGGCAGTAAAATTGACTG+GGG 0.742487 3_3:-65913611 Msa0465510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAATAAAAAAGAAGAA+AGG + chr3_3:65911909-65911928 None:intergenic 10.0%
!!! TGATTATATCATTTAAAATT+TGG - chr3_3:65915771-65915790 Msa0465510:intron 10.0%
!!! GATTATATCATTTAAAATTT+GGG - chr3_3:65915772-65915791 Msa0465510:intron 10.0%
!!! AAAGCAATTTTTTTTTTTTA+TGG - chr3_3:65916095-65916114 Msa0465510:CDS 10.0%
!!! TTTTAAAATGTATTTTATTG+AGG - chr3_3:65916796-65916815 Msa0465510:intron 10.0%
!!! TTAATTATATGCTTTTCTTT+TGG - chr3_3:65911964-65911983 Msa0465510:three_prime_UTR 15.0%
!! TTGAACTATAGAAATATAAT+AGG - chr3_3:65912351-65912370 Msa0465510:CDS 15.0%
!! TGATTTATGAGTATTAATTA+CGG - chr3_3:65913370-65913389 Msa0465510:intron 15.0%
!! ATTTGAACATAAATGAATTA+TGG - chr3_3:65913893-65913912 Msa0465510:CDS 15.0%
!! ATATTTATCTTAAATTGCTT+GGG - chr3_3:65915499-65915518 Msa0465510:intron 15.0%
!!! TTTTTTTTTTTATGGTGTAT+AGG - chr3_3:65916103-65916122 Msa0465510:intron 15.0%
!! AATAAAACTTTAATTACTAG+CGG + chr3_3:65917618-65917637 None:intergenic 15.0%
!!! ATTATTTAGTCTTAAAAGAA+AGG - chr3_3:65917820-65917839 Msa0465510:CDS 15.0%
!! AATAAAACACTATCATTCTA+TGG - chr3_3:65912316-65912335 Msa0465510:exon 20.0%
!! GTAGTATATAAACAATTCAT+CGG - chr3_3:65912373-65912392 Msa0465510:CDS 20.0%
!! ATATCTCTAGTAAGAATTAT+TGG - chr3_3:65912975-65912994 Msa0465510:intron 20.0%
!!! ACATTGAAATTTGAAATGAA+TGG - chr3_3:65913035-65913054 Msa0465510:intron 20.0%
!! TAGTATACAGAAATAAGTAT+TGG + chr3_3:65913633-65913652 None:intergenic 20.0%
!! ACCACATAAATTTCAAATAA+TGG + chr3_3:65913687-65913706 None:intergenic 20.0%
!! ACATAAATGAATTATGGAAT+TGG - chr3_3:65913899-65913918 Msa0465510:CDS 20.0%
!! TTTCTTAAAGAAAAAATTCC+AGG - chr3_3:65914292-65914311 Msa0465510:intron 20.0%
!! TTCTTAAAGAAAAAATTCCA+GGG - chr3_3:65914293-65914312 Msa0465510:intron 20.0%
!! TGATTCTATTAAACAAATCA+TGG - chr3_3:65914369-65914388 Msa0465510:intron 20.0%
!! TTAAATCTAAGCATTTATGT+TGG + chr3_3:65915440-65915459 None:intergenic 20.0%
!! CATATTTATCTTAAATTGCT+TGG - chr3_3:65915498-65915517 Msa0465510:intron 20.0%
!! TAAATGATATAATCAACACA+AGG + chr3_3:65915766-65915785 None:intergenic 20.0%
!!! AAAAGTATATGAATGCAAAA+AGG + chr3_3:65916048-65916067 None:intergenic 20.0%
!! TCAAATAAATGTGAGAAAAT+TGG - chr3_3:65916368-65916387 Msa0465510:intron 20.0%
!!! ATTTTACTGATTTACATCTT+TGG - chr3_3:65916824-65916843 Msa0465510:intron 20.0%
!! GCAACAAAAAGAAATTATAA+AGG + chr3_3:65917422-65917441 None:intergenic 20.0%
!! AAAAAAAGAAAGAAAGAATG+TGG - chr3_3:65917986-65918005 Msa0465510:five_prime_UTR 20.0%
!! CACAAGTATTACTATATATA+GGG + chr3_3:65918051-65918070 None:intergenic 20.0%
!!! TTGTTTTGAAAAGAAAAGGT+GGG + chr3_3:65911720-65911739 None:intergenic 25.0%
! TTAAAGACTGAATTGAATGA+AGG + chr3_3:65912123-65912142 None:intergenic 25.0%
! CTATCATTCTATGGTATATT+TGG - chr3_3:65912325-65912344 Msa0465510:exon 25.0%
!! TTCTCAAGTTCTTTAAGAAT+AGG - chr3_3:65912400-65912419 Msa0465510:CDS 25.0%
! TGATCGATTGAAAATAGTTT+AGG - chr3_3:65912430-65912449 Msa0465510:intron 25.0%
! GTAAGATTATACCTTCAATT+TGG + chr3_3:65912557-65912576 None:intergenic 25.0%
! ATCACTTATTACAAATCTCA+CGG + chr3_3:65913122-65913141 None:intergenic 25.0%
! ACATCATCTATTATTATCGT+GGG + chr3_3:65913260-65913279 None:intergenic 25.0%
! AGTATTAATTACGGTACTAA+TGG - chr3_3:65913379-65913398 Msa0465510:intron 25.0%
! ATTCACAATTCACAAAAAGA+TGG + chr3_3:65913412-65913431 None:intergenic 25.0%
! AAAGGTAAAAAACAGTTGTT+GGG + chr3_3:65913450-65913469 None:intergenic 25.0%
! AAAAGGTAAAAAACAGTTGT+TGG + chr3_3:65913451-65913470 None:intergenic 25.0%
!!! TGTTTTTTACCTTTTTATGC+AGG - chr3_3:65913456-65913475 Msa0465510:intron 25.0%
! TACGTATTATTCTACCAAAA+GGG + chr3_3:65913519-65913538 None:intergenic 25.0%
! ATACGTATTATTCTACCAAA+AGG + chr3_3:65913520-65913539 None:intergenic 25.0%
! AAACTAGAAAGATTATACCT+TGG + chr3_3:65913583-65913602 None:intergenic 25.0%
!! GCCATTATTTGAAATTTATG+TGG - chr3_3:65913683-65913702 Msa0465510:CDS 25.0%
! TTGTAACTTAATGATACACT+AGG - chr3_3:65913776-65913795 Msa0465510:intron 25.0%
! TGTAACTTAATGATACACTA+GGG - chr3_3:65913777-65913796 Msa0465510:intron 25.0%
!!! CACAAACAAACATTTTAACT+AGG + chr3_3:65913814-65913833 None:intergenic 25.0%
! CTAGTTAAAATGTTTGTTTG+TGG - chr3_3:65913812-65913831 Msa0465510:intron 25.0%
!! ATGAACAAGTTTCTTCTTTT+AGG + chr3_3:65913865-65913884 None:intergenic 25.0%
!!! GAATTGGAATATCATTTTTG+CGG - chr3_3:65913915-65913934 Msa0465510:CDS 25.0%
!!! GATTGATGTTTAGGTTTTTT+CGG - chr3_3:65913954-65913973 Msa0465510:CDS 25.0%
! TCAGAAAAGGAAAATATCAA+AGG + chr3_3:65914007-65914026 None:intergenic 25.0%
! TAAAGGTGATTATTCAGAAA+AGG + chr3_3:65914020-65914039 None:intergenic 25.0%
! TATTTGACAACACACTTAAT+AGG - chr3_3:65914066-65914085 Msa0465510:intron 25.0%
! TATGAACATTAATGTTGAAG+AGG - chr3_3:65914330-65914349 Msa0465510:intron 25.0%
! TTCTATTAAACAAATCATGG+AGG - chr3_3:65914372-65914391 Msa0465510:intron 25.0%
! AAGATGGTAATAAAACTGAT+GGG - chr3_3:65914395-65914414 Msa0465510:intron 25.0%
! TTAGATATGAAGCTCTTTAT+TGG - chr3_3:65914493-65914512 Msa0465510:intron 25.0%
! CAATGAAGATAATTCTTCTA+AGG - chr3_3:65914531-65914550 Msa0465510:intron 25.0%
! ATTATTATCATGATCGTAAC+TGG + chr3_3:65914875-65914894 None:intergenic 25.0%
! CAGTATATTATAAACACTAG+AGG - chr3_3:65914964-65914983 Msa0465510:CDS 25.0%
!! ATTTTCATTTCTCCAAAATC+TGG - chr3_3:65915188-65915207 Msa0465510:CDS 25.0%
!! TTTTCATTTCTCCAAAATCT+GGG - chr3_3:65915189-65915208 Msa0465510:CDS 25.0%
!!! TTCTTACTTTCAAGTTTCAA+CGG + chr3_3:65915234-65915253 None:intergenic 25.0%
! ATAGCCAACTAAAAATTGAT+GGG + chr3_3:65915331-65915350 None:intergenic 25.0%
! AACATAATGTCATATTCTTG+AGG - chr3_3:65915464-65915483 Msa0465510:CDS 25.0%
!!! AAGAAAAAGCAGTATTTTTG+AGG + chr3_3:65915567-65915586 None:intergenic 25.0%
! ATAACAGATTGTTTGAAAAC+AGG + chr3_3:65916265-65916284 None:intergenic 25.0%
!! AACTTTTCAAAAGAAGAATG+AGG + chr3_3:65916585-65916604 None:intergenic 25.0%
! GTTAAATATTAGCACATGTT+AGG - chr3_3:65916602-65916621 Msa0465510:intron 25.0%
! AGTTAATTACTATTCGAAAG+AGG + chr3_3:65916686-65916705 None:intergenic 25.0%
! ATGAAAACTCAAGAAAACTT+GGG + chr3_3:65916857-65916876 None:intergenic 25.0%
! AATGAAAACTCAAGAAAACT+TGG + chr3_3:65916858-65916877 None:intergenic 25.0%
!! GTTTTCTTGAGTTTTCATTT+TGG - chr3_3:65916859-65916878 Msa0465510:intron 25.0%
! AAACAGAATGCAAGTTATAA+AGG - chr3_3:65916937-65916956 Msa0465510:intron 25.0%
! CATATGATAACATAGAGATT+GGG + chr3_3:65917452-65917471 None:intergenic 25.0%
! ACATATGATAACATAGAGAT+TGG + chr3_3:65917453-65917472 None:intergenic 25.0%
! AAAGAATGTGGTTAAAGTAT+TGG - chr3_3:65917998-65918017 Msa0465510:five_prime_UTR 25.0%
! CCACAAGTATTACTATATAT+AGG + chr3_3:65918052-65918071 None:intergenic 25.0%
! CCTATATATAGTAATACTTG+TGG - chr3_3:65918049-65918068 Msa0465510:five_prime_UTR 25.0%
!!! TTTTGGGATAAGTTTTCTGT+TGG + chr3_3:65911485-65911504 None:intergenic 30.0%
!!! GTTGTTTTGAAAAGAAAAGG+TGG + chr3_3:65911721-65911740 None:intergenic 30.0%
!!! AGGGTTGTTTTGAAAAGAAA+AGG + chr3_3:65911724-65911743 None:intergenic 30.0%
TTGAAAAGACTGAGATTGAA+GGG + chr3_3:65911743-65911762 None:intergenic 30.0%
! GCTTTTCTTTTGGCAAATTT+TGG - chr3_3:65911974-65911993 Msa0465510:three_prime_UTR 30.0%
TCAGAAATCTTGCAACATAA+AGG - chr3_3:65912021-65912040 Msa0465510:three_prime_UTR 30.0%
CAGAAATCTTGCAACATAAA+GGG - chr3_3:65912022-65912041 Msa0465510:three_prime_UTR 30.0%
!! GTGTTTTATTGTTAAACCTC+CGG + chr3_3:65912306-65912325 None:intergenic 30.0%
TTGTAGACTGAAAATAGTTG+AGG - chr3_3:65912460-65912479 Msa0465510:intron 30.0%
AGAGAGAGAGTGATAATTTA+GGG - chr3_3:65912530-65912549 Msa0465510:intron 30.0%
TAATTTAGGGACCAAATTGA+AGG - chr3_3:65912543-65912562 Msa0465510:intron 30.0%
TGAAATTATGTCTCAGTTGA+AGG - chr3_3:65912712-65912731 Msa0465510:intron 30.0%
! TCTCTTGATTTTCCTACTTA+TGG - chr3_3:65912767-65912786 Msa0465510:intron 30.0%
!!! TGCATAATTTTGAAGCATCA+TGG + chr3_3:65912848-65912867 None:intergenic 30.0%
TCAAAATTATGCAGATACAC+TGG - chr3_3:65912855-65912874 Msa0465510:intron 30.0%
TCACTTATTACAAATCTCAC+GGG + chr3_3:65913121-65913140 None:intergenic 30.0%
CACATCATCTATTATTATCG+TGG + chr3_3:65913261-65913280 None:intergenic 30.0%
ATTGTGAATAATGCAGTTTC+CGG - chr3_3:65913287-65913306 Msa0465510:intron 30.0%
ACAAATCCATTTGAAAGATG+AGG + chr3_3:65913329-65913348 None:intergenic 30.0%
TCATAAATCATGACAACACT+TGG + chr3_3:65913360-65913379 None:intergenic 30.0%
! TTTTTACCTTTTTATGCAGG+TGG - chr3_3:65913459-65913478 Msa0465510:intron 30.0%
! TTTTACCTTTTTATGCAGGT+GGG - chr3_3:65913460-65913479 Msa0465510:intron 30.0%
AGAATAATACGTATTAGTCC+TGG - chr3_3:65913526-65913545 Msa0465510:intron 30.0%
!!! CTTTTTTCCTTCAAGTGATT+GGG - chr3_3:65913604-65913623 Msa0465510:CDS 30.0%
!!! TTTTTTCCTTCAAGTGATTG+GGG - chr3_3:65913605-65913624 Msa0465510:CDS 30.0%
TACAAACAACAAGCATCATT+TGG + chr3_3:65913761-65913780 None:intergenic 30.0%
!! CAAGCTTTTGATTGATGTTT+AGG - chr3_3:65913945-65913964 Msa0465510:CDS 30.0%
AGCATTACGTAAACTACTAA+AGG + chr3_3:65914037-65914056 None:intergenic 30.0%
GAAGATGGTAATAAAACTGA+TGG - chr3_3:65914394-65914413 Msa0465510:intron 30.0%
AGATGGTAATAAAACTGATG+GGG - chr3_3:65914396-65914415 Msa0465510:intron 30.0%
GGAAATAAAGAACATGGAAA+GGG - chr3_3:65914576-65914595 Msa0465510:intron 30.0%
TAAAGTTCGCAATATCAAAG+TGG - chr3_3:65914654-65914673 Msa0465510:intron 30.0%
TTCTGATAAAGTCTCTTCTA+AGG - chr3_3:65914741-65914760 Msa0465510:intron 30.0%
TATTATAAACACTAGAGGTG+TGG - chr3_3:65914969-65914988 Msa0465510:CDS 30.0%
ACGTATATTAGAGAAGAAAG+TGG - chr3_3:65915059-65915078 Msa0465510:CDS 30.0%
TTTCATTTCTCCAAAATCTG+GGG - chr3_3:65915190-65915209 Msa0465510:CDS 30.0%
TAGCCAACTAAAAATTGATG+GGG + chr3_3:65915330-65915349 None:intergenic 30.0%
CATAGCCAACTAAAAATTGA+TGG + chr3_3:65915332-65915351 None:intergenic 30.0%
CAATGTAGATTATGACCATA+TGG + chr3_3:65915362-65915381 None:intergenic 30.0%
!!! ATCTACTTTTTTTCTGTGCT+TGG + chr3_3:65915666-65915685 None:intergenic 30.0%
CCGGTTAAAATATGTATCTT+CGG + chr3_3:65915692-65915711 None:intergenic 30.0%
!!! CCGAAGATACATATTTTAAC+CGG - chr3_3:65915689-65915708 Msa0465510:intron 30.0%
!! GCTTATAGAATGGATTTTTC+TGG - chr3_3:65915804-65915823 Msa0465510:intron 30.0%
!!! GATTTTTCTGGTTAAAATGC+AGG - chr3_3:65915816-65915835 Msa0465510:intron 30.0%
!!! CGAGTTTTTTGAATATGTAG+AGG - chr3_3:65915944-65915963 Msa0465510:intron 30.0%
!! TGACTTTACCAATTTTAGCA+CGG + chr3_3:65916136-65916155 None:intergenic 30.0%
GTGGTAAATACATATTCACA+TGG - chr3_3:65916197-65916216 Msa0465510:intron 30.0%
! TTCTCACATTTATTTGAAGC+CGG + chr3_3:65916365-65916384 None:intergenic 30.0%
TTTGAAAAAAGCTATTCCAC+CGG - chr3_3:65916412-65916431 Msa0465510:intron 30.0%
TTATGTAAAGACAATGCATG+TGG - chr3_3:65916456-65916475 Msa0465510:intron 30.0%
! GCAAAACAACTTAAGCTTTT+TGG - chr3_3:65916480-65916499 Msa0465510:intron 30.0%
! TTTTGGATAGTTAGTTCAGT+CGG - chr3_3:65916497-65916516 Msa0465510:intron 30.0%
TTCACACTATTTGATCAAAG+AGG + chr3_3:65916547-65916566 None:intergenic 30.0%
! TTTTCAAAAGAAGAATGAGG+TGG + chr3_3:65916582-65916601 None:intergenic 30.0%
AAATATTAGCACATGTTAGG+CGG - chr3_3:65916605-65916624 Msa0465510:intron 30.0%
GAATGACTTCAGCATTAAAT+TGG + chr3_3:65916647-65916666 None:intergenic 30.0%
TTCAACTATGAGGAAATTGA+TGG + chr3_3:65916728-65916747 None:intergenic 30.0%
TTTCCTCATAGTTGAAATGT+TGG - chr3_3:65916732-65916751 Msa0465510:CDS 30.0%
!! TTGGTTTTCGAAATCCAAAA+TGG - chr3_3:65916980-65916999 Msa0465510:intron 30.0%
! TGGTTTTCGAAATCCAAAAT+GGG - chr3_3:65916981-65917000 Msa0465510:intron 30.0%
TTAATGGCAAGGTAAATTAG+TGG - chr3_3:65917025-65917044 Msa0465510:intron 30.0%
! CAATATCCAAGCATGATTTT+TGG - chr3_3:65917070-65917089 Msa0465510:intron 30.0%
ATTAATGTTCTGCTGTGTTT+AGG - chr3_3:65917140-65917159 Msa0465510:intron 30.0%
TTAATGTTCTGCTGTGTTTA+GGG - chr3_3:65917141-65917160 Msa0465510:intron 30.0%
AGGGAAGAAAGAAATTTGAA+GGG + chr3_3:65917276-65917295 None:intergenic 30.0%
CATAACCATAATGCACATAA+AGG + chr3_3:65917538-65917557 None:intergenic 30.0%
CTTTATGTGCATTATGGTTA+TGG - chr3_3:65917536-65917555 Msa0465510:intron 30.0%
TGTTGTTAAATCACTTGAGT+TGG - chr3_3:65917865-65917884 Msa0465510:CDS 30.0%
!! TTGTTGTGCTGTTGTGTTTT+GGG + chr3_3:65911501-65911520 None:intergenic 35.0%
!! TTTGTTGTGCTGTTGTGTTT+TGG + chr3_3:65911502-65911521 None:intergenic 35.0%
GTTTGAAGAAGATTGAGACA+AGG + chr3_3:65911546-65911565 None:intergenic 35.0%
!! TGTTGTTTGTGACAAGGTTT+TGG + chr3_3:65911596-65911615 None:intergenic 35.0%
!! TTGGTTTGTTGTTTGTGACA+AGG + chr3_3:65911602-65911621 None:intergenic 35.0%
CACAAACAACAAACCAAACA+TGG - chr3_3:65911605-65911624 Msa0465510:three_prime_UTR 35.0%
AAAAGGTGGGTGGTTTATTA+GGG + chr3_3:65911707-65911726 None:intergenic 35.0%
!! TTTTGAAAAGAAAAGGTGGG+TGG + chr3_3:65911717-65911736 None:intergenic 35.0%
CTTGAAAAGACTGAGATTGA+AGG + chr3_3:65911744-65911763 None:intergenic 35.0%
!! CAATCTCAGTCTTTTCAAGA+AGG - chr3_3:65911745-65911764 Msa0465510:three_prime_UTR 35.0%
GTTAAGAGACGATGTATTGT+TGG + chr3_3:65911811-65911830 None:intergenic 35.0%
ACAATACATCGTCTCTTAAC+TGG - chr3_3:65911811-65911830 Msa0465510:three_prime_UTR 35.0%
CAATACATCGTCTCTTAACT+GGG - chr3_3:65911812-65911831 Msa0465510:three_prime_UTR 35.0%
CCTGTTCAATATCATCGAAA+TGG + chr3_3:65911857-65911876 None:intergenic 35.0%
CCATTTCGATGATATTGAAC+AGG - chr3_3:65911854-65911873 Msa0465510:three_prime_UTR 35.0%
CAAGATTTCTGAGCAAAAAG+GGG + chr3_3:65912013-65912032 None:intergenic 35.0%
GCAAGATTTCTGAGCAAAAA+GGG + chr3_3:65912014-65912033 None:intergenic 35.0%
TGCAAGATTTCTGAGCAAAA+AGG + chr3_3:65912015-65912034 None:intergenic 35.0%
GAGAGAGAGAGTGATAATTT+AGG - chr3_3:65912529-65912548 Msa0465510:intron 35.0%
ACTTGAAGATGCTATTGAGA+AGG - chr3_3:65912622-65912641 Msa0465510:CDS 35.0%
AAGAAGCAGCAAAGCTAAAA+AGG - chr3_3:65912654-65912673 Msa0465510:intron 35.0%
AGAAGCAGCAAAGCTAAAAA+GGG - chr3_3:65912655-65912674 Msa0465510:intron 35.0%
AATTTCAGCAACACTATCCT+TGG + chr3_3:65912699-65912718 None:intergenic 35.0%
ACGATAAACAAGCCATAAGT+AGG + chr3_3:65912782-65912801 None:intergenic 35.0%
TTGTGAATAATGCAGTTTCC+GGG - chr3_3:65913288-65913307 Msa0465510:intron 35.0%
AGATGACCTCATCTTTCAAA+TGG - chr3_3:65913320-65913339 Msa0465510:intron 35.0%
ATTCACAAAAAGATGGCTTG+AGG + chr3_3:65913405-65913424 None:intergenic 35.0%
! AGGGTACTCAAAAAATTCAG+AGG - chr3_3:65913492-65913511 Msa0465510:intron 35.0%
! AAAAATTCAGAGGACCCTTT+TGG - chr3_3:65913502-65913521 Msa0465510:intron 35.0%
AATACGTATTAGTCCTGGTA+TGG - chr3_3:65913531-65913550 Msa0465510:intron 35.0%
ATACGTATTAGTCCTGGTAT+GGG - chr3_3:65913532-65913551 Msa0465510:intron 35.0%
CCAATCACTTGAAGGAAAAA+AGG + chr3_3:65913606-65913625 None:intergenic 35.0%
!!! CCTTTTTTCCTTCAAGTGAT+TGG - chr3_3:65913603-65913622 Msa0465510:CDS 35.0%
ATACTATAGACAGTTGCTCA+CGG - chr3_3:65913647-65913666 Msa0465510:CDS 35.0%
GTTACTCGTTGAATTTCCTT+TGG + chr3_3:65914110-65914129 None:intergenic 35.0%
! CTTTTAGCAAGTAAAGATGG+GGG + chr3_3:65914136-65914155 None:intergenic 35.0%
! CCTTTTAGCAAGTAAAGATG+GGG + chr3_3:65914137-65914156 None:intergenic 35.0%
! GCCTTTTAGCAAGTAAAGAT+GGG + chr3_3:65914138-65914157 None:intergenic 35.0%
TGAGAATTTGTCTTCAGTTG+AGG - chr3_3:65914174-65914193 Msa0465510:intron 35.0%
TGAGAAAAACAGCAATGTTG+AGG - chr3_3:65914234-65914253 Msa0465510:intron 35.0%
! ATAACTTTGACTTTCAACCC+TGG + chr3_3:65914313-65914332 None:intergenic 35.0%
AAACAAATCATGGAGGAAGA+TGG - chr3_3:65914379-65914398 Msa0465510:intron 35.0%
! TAAATCCTTTTCTTCATCCG+AGG + chr3_3:65914476-65914495 None:intergenic 35.0%
GATATGAAGCTCTTTATTGG+CGG - chr3_3:65914496-65914515 Msa0465510:intron 35.0%
TGAATTTATACGTCTTCCAG+CGG - chr3_3:65914555-65914574 Msa0465510:intron 35.0%
CGGAAATAAAGAACATGGAA+AGG - chr3_3:65914575-65914594 Msa0465510:intron 35.0%
CTTTCCTCTTACATATACCT+AGG - chr3_3:65914602-65914621 Msa0465510:intron 35.0%
TTCTCCTAGGTATATGTAAG+AGG + chr3_3:65914609-65914628 None:intergenic 35.0%
TCATTATCGAGATTTCTCCT+AGG + chr3_3:65914622-65914641 None:intergenic 35.0%
!! GAAAGCATTTGTCATTGGTA+AGG + chr3_3:65915158-65915177 None:intergenic 35.0%
!! TGTGTGAAAGCATTTGTCAT+TGG + chr3_3:65915163-65915182 None:intergenic 35.0%
TTCATTTCTCCAAAATCTGG+GGG - chr3_3:65915191-65915210 Msa0465510:CDS 35.0%
TGGCTATGTACATATCCATA+TGG - chr3_3:65915344-65915363 Msa0465510:CDS 35.0%
CTTGTCAATGAACTGACTAA+TGG - chr3_3:65915584-65915603 Msa0465510:intron 35.0%
TAAAATGCAGGACTCTATGT+TGG - chr3_3:65915828-65915847 Msa0465510:intron 35.0%
GTCCAATTGAGACGAAAATT+TGG - chr3_3:65915879-65915898 Msa0465510:CDS 35.0%
! GTCCAAATTTTCGTCTCAAT+TGG + chr3_3:65915884-65915903 None:intergenic 35.0%
TGAGACGAAAATTTGGACAT+TGG - chr3_3:65915886-65915905 Msa0465510:CDS 35.0%
ATTTGGACATTGGAATGATG+TGG - chr3_3:65915896-65915915 Msa0465510:CDS 35.0%
TAGAGGCAGTAAAATTGACT+GGG - chr3_3:65915961-65915980 Msa0465510:intron 35.0%
GGAAAAAATAGTGCACACAT+AGG + chr3_3:65916325-65916344 None:intergenic 35.0%
!!! CCTATTTGTGCACTTTTTTC+CGG - chr3_3:65916343-65916362 Msa0465510:intron 35.0%
TTTGGATAGTTAGTTCAGTC+GGG - chr3_3:65916498-65916517 Msa0465510:intron 35.0%
TACTATTCGAAAGAGGAATG+AGG + chr3_3:65916679-65916698 None:intergenic 35.0%
CAACCAACATTTCAACTATG+AGG + chr3_3:65916738-65916757 None:intergenic 35.0%
TGCATTCTGTTTGTATACGA+GGG + chr3_3:65916929-65916948 None:intergenic 35.0%
TTGCATTCTGTTTGTATACG+AGG + chr3_3:65916930-65916949 None:intergenic 35.0%
AATGCAAGTTATAAAGGCCA+GGG - chr3_3:65916943-65916962 Msa0465510:intron 35.0%
!! GAAATCCAAAATGGGTTGAT+GGG - chr3_3:65916989-65917008 Msa0465510:intron 35.0%
!! AAATCCAAAATGGGTTGATG+GGG - chr3_3:65916990-65917009 Msa0465510:intron 35.0%
ATTGCTTCAACTTAATGGCA+AGG - chr3_3:65917014-65917033 Msa0465510:intron 35.0%
TAGCACAAGAAAACTTTGCT+CGG + chr3_3:65917217-65917236 None:intergenic 35.0%
CTTACTCAGGTAGTTTCAAT+CGG + chr3_3:65917245-65917264 None:intergenic 35.0%
CAGGGAAGAAAGAAATTTGA+AGG + chr3_3:65917277-65917296 None:intergenic 35.0%
ACTATCGCTCAATCAAGAAA+AGG + chr3_3:65917354-65917373 None:intergenic 35.0%
!! GAAATTATAAAGGCATCGTG+AGG + chr3_3:65917412-65917431 None:intergenic 35.0%
! GCAAATGTTAGTCTGTTAGT+AGG - chr3_3:65917646-65917665 Msa0465510:intron 35.0%
! TAGTTTTCGTGGTTTGAACT+CGG - chr3_3:65917674-65917693 Msa0465510:intron 35.0%
GAACCTTCTTAAAACTCTTC+TGG - chr3_3:65917697-65917716 Msa0465510:CDS 35.0%
!!! ACACCAGAAGAGTTTTAAGA+AGG + chr3_3:65917703-65917722 None:intergenic 35.0%
ATAATAGAGTTGCGTATCTG+TGG - chr3_3:65917776-65917795 Msa0465510:CDS 35.0%
ATCGAACATAAGATCTTGAG+AGG + chr3_3:65917926-65917945 None:intergenic 35.0%
ATTGTCCCCGATATCAATTT+CGG - chr3_3:65917944-65917963 Msa0465510:CDS 35.0%
AGCCAAACCGAAATTGATAT+CGG + chr3_3:65917954-65917973 None:intergenic 35.0%
ATATATAGGGATCGATGTTG+AGG + chr3_3:65918038-65918057 None:intergenic 35.0%
GGTGATGTGTAGAGATAAAA+AGG - chr3_3:65918070-65918089 Msa0465510:five_prime_UTR 35.0%
TGGAGAAGATGAAGATGCAA+TGG + chr3_3:65911576-65911595 None:intergenic 40.0%
CAACAAACCAAACATGGTGA+TGG - chr3_3:65911611-65911630 Msa0465510:three_prime_UTR 40.0%
AATGAAGCCATCACCATGTT+TGG + chr3_3:65911621-65911640 None:intergenic 40.0%
!! AAACATGGTGATGGCTTCAT+TGG - chr3_3:65911620-65911639 Msa0465510:three_prime_UTR 40.0%
!! AACATGGTGATGGCTTCATT+GGG - chr3_3:65911621-65911640 Msa0465510:three_prime_UTR 40.0%
GTTAGAGAAGAAGATGGCTT+GGG + chr3_3:65911652-65911671 None:intergenic 40.0%
TGTTAGAGAAGAAGATGGCT+TGG + chr3_3:65911653-65911672 None:intergenic 40.0%
GGTTGTGTTAGAGAAGAAGA+TGG + chr3_3:65911658-65911677 None:intergenic 40.0%
GTGAAGATTGAAACGTGAAG+GGG + chr3_3:65911685-65911704 None:intergenic 40.0%
GGTGAAGATTGAAACGTGAA+GGG + chr3_3:65911686-65911705 None:intergenic 40.0%
GAAAAGGTGGGTGGTTTATT+AGG + chr3_3:65911708-65911727 None:intergenic 40.0%
! TGTATTGTTGGTGGAATTGG+TGG + chr3_3:65911799-65911818 None:intergenic 40.0%
! CGATGTATTGTTGGTGGAAT+TGG + chr3_3:65911802-65911821 None:intergenic 40.0%
AAGAGACGATGTATTGTTGG+TGG + chr3_3:65911808-65911827 None:intergenic 40.0%
TTAACTGGGATTGGAATCGT+TGG - chr3_3:65911826-65911845 Msa0465510:three_prime_UTR 40.0%
AAGCTTTGCATCTCTTCTCA+AGG - chr3_3:65911881-65911900 Msa0465510:three_prime_UTR 40.0%
AACACTTGAGCTCAATCACT+TGG + chr3_3:65912147-65912166 None:intergenic 40.0%
CCAAAAGATTCGTCCTTAAG+TGG + chr3_3:65912178-65912197 None:intergenic 40.0%
! CCACTTAAGGACGAATCTTT+TGG - chr3_3:65912175-65912194 Msa0465510:three_prime_UTR 40.0%
GAATAATTCCACTTCCTCCA+AGG + chr3_3:65912219-65912238 None:intergenic 40.0%
AGTGTAAGTAAAGTCTAGCC+AGG + chr3_3:65912241-65912260 None:intergenic 40.0%
TTTACTTACACTTCCGACCA+AGG - chr3_3:65912249-65912268 Msa0465510:three_prime_UTR 40.0%
CTCTCTCTCTCTCTCTTATT+TGG + chr3_3:65912518-65912537 None:intergenic 40.0%
TATAGTTGAAGCGACATCCA+AGG - chr3_3:65912679-65912698 Msa0465510:intron 40.0%
TTATGCAGATACACTGGAAG+TGG - chr3_3:65912861-65912880 Msa0465510:intron 40.0%
CACGGGATCTTAATTTCAGT+AGG + chr3_3:65913104-65913123 None:intergenic 40.0%
TTTCCCAACCAATTGTGTGT+GGG + chr3_3:65913235-65913254 None:intergenic 40.0%
! TTTTCCCAACCAATTGTGTG+TGG + chr3_3:65913236-65913255 None:intergenic 40.0%
TGTGAATAATGCAGTTTCCG+GGG - chr3_3:65913289-65913308 Msa0465510:intron 40.0%
AGGTCATCTGTTATATTCCC+CGG + chr3_3:65913309-65913328 None:intergenic 40.0%
AAACAGTTGTTGGGCATCAA+AGG + chr3_3:65913441-65913460 None:intergenic 40.0%
TGACGACACATATCATATGC+AGG - chr3_3:65913716-65913735 Msa0465510:CDS 40.0%
AACAACAAGCATCATTTGGC+TGG + chr3_3:65913757-65913776 None:intergenic 40.0%
! CCCCATCTTTACTTGCTAAA+AGG - chr3_3:65914134-65914153 Msa0465510:intron 40.0%
! GGCCTTTTAGCAAGTAAAGA+TGG + chr3_3:65914139-65914158 None:intergenic 40.0%
GAAGACAAATTCTCAACCTC+TGG + chr3_3:65914169-65914188 None:intergenic 40.0%
GAAAAACAGCAATGTTGAGG+CGG - chr3_3:65914237-65914256 Msa0465510:intron 40.0%
TGATGGGGAAGATGATAATC+TGG - chr3_3:65914411-65914430 Msa0465510:intron 40.0%
TAATCTGGATGAACCTGATG+AGG - chr3_3:65914426-65914445 Msa0465510:intron 40.0%
TCCAGCGGAAATAAAGAACA+TGG - chr3_3:65914570-65914589 Msa0465510:intron 40.0%
! TCCATGTTCTTTATTTCCGC+TGG + chr3_3:65914574-65914593 None:intergenic 40.0%
GGAGAAATCTCGATAATGAC+AGG - chr3_3:65914623-65914642 Msa0465510:intron 40.0%
TATGCCTTCTGATGTTGCTA+AGG - chr3_3:65914708-65914727 Msa0465510:intron 40.0%
! TGATGTTGCTAAGGCCTTTT+GGG - chr3_3:65914717-65914736 Msa0465510:intron 40.0%
GACTTTATCAGAACCCCAAA+AGG + chr3_3:65914734-65914753 None:intergenic 40.0%
ATGTTGTTGCACATCAAGAG+AGG - chr3_3:65914995-65915014 Msa0465510:CDS 40.0%
!!! CAGCCCCATCAATTTTTAGT+TGG - chr3_3:65915324-65915343 Msa0465510:CDS 40.0%
TCATATTCTTGAGGTCTGTG+CGG - chr3_3:65915473-65915492 Msa0465510:CDS 40.0%
TTGGATACCTAAGTCAAGTG+AGG + chr3_3:65915610-65915629 None:intergenic 40.0%
! GACAATTTCACGCATGCTTT+TGG + chr3_3:65915629-65915648 None:intergenic 40.0%
AAAGGATCAAAATCCCCTCT+GGG + chr3_3:65915724-65915743 None:intergenic 40.0%
TGGACTATTTCGATGCCATA+AGG + chr3_3:65915864-65915883 None:intergenic 40.0%
GTAGAGGCAGTAAAATTGAC+TGG - chr3_3:65915960-65915979 Msa0465510:intron 40.0%
AGAGGCAGTAAAATTGACTG+GGG - chr3_3:65915962-65915981 Msa0465510:intron 40.0%
! TTGAAAAGGCATAAACCACC+TGG + chr3_3:65916007-65916026 None:intergenic 40.0%
GTGACATTCCGTGCTAAAAT+TGG - chr3_3:65916125-65916144 Msa0465510:intron 40.0%
ATTCATCAGGATACAGTCCA+CGG + chr3_3:65916172-65916191 None:intergenic 40.0%
TGGACTGTATCCTGATGAAT+TGG - chr3_3:65916172-65916191 Msa0465510:intron 40.0%
GGACTGTATCCTGATGAATT+GGG - chr3_3:65916173-65916192 Msa0465510:intron 40.0%
TTTACCACTCCCAATTCATC+AGG + chr3_3:65916185-65916204 None:intergenic 40.0%
TTTCCCTTACATCATCATGC+TGG - chr3_3:65916238-65916257 Msa0465510:intron 40.0%
AATAGTGCACACATAGGCAT+AGG + chr3_3:65916319-65916338 None:intergenic 40.0%
! CCGGAAAAAAGTGCACAAAT+AGG + chr3_3:65916346-65916365 None:intergenic 40.0%
GAATGCAAGTTATAAAGGCC+AGG - chr3_3:65916942-65916961 Msa0465510:intron 40.0%
ATGCAAGTTATAAAGGCCAG+GGG - chr3_3:65916944-65916963 Msa0465510:intron 40.0%
!! CGAAATCCAAAATGGGTTGA+TGG - chr3_3:65916988-65917007 Msa0465510:intron 40.0%
! AATTCCCCATCAACCCATTT+TGG + chr3_3:65916997-65917016 None:intergenic 40.0%
GGGGAATTGCTTCAACTTAA+TGG - chr3_3:65917009-65917028 Msa0465510:intron 40.0%
GTGAGACCAAAAATCATGCT+TGG + chr3_3:65917079-65917098 None:intergenic 40.0%
AGCACAAGAAAACTTTGCTC+GGG + chr3_3:65917216-65917235 None:intergenic 40.0%
!! AAGGGTTTTGTAGCTTACTC+AGG + chr3_3:65917258-65917277 None:intergenic 40.0%
ATTTCTTTCTTCCCTGACGT+TGG - chr3_3:65917281-65917300 Msa0465510:intron 40.0%
TAAGGTCTTTCTATAGCTCC+TGG + chr3_3:65917510-65917529 None:intergenic 40.0%
AGGAGCTATAGAAAGACCTT+AGG - chr3_3:65917509-65917528 Msa0465510:intron 40.0%
GGAGCTATAGAAAGACCTTA+GGG - chr3_3:65917510-65917529 Msa0465510:intron 40.0%
ATGCACATAAAGGATCCCTA+AGG + chr3_3:65917528-65917547 None:intergenic 40.0%
GGGATCCTTTATGTGCATTA+TGG - chr3_3:65917530-65917549 Msa0465510:intron 40.0%
!!! AGTAGGCATGTTAGTTTTCG+TGG - chr3_3:65917663-65917682 Msa0465510:intron 40.0%
! AGTTTTCGTGGTTTGAACTC+GGG - chr3_3:65917675-65917694 Msa0465510:intron 40.0%
!! TTAAATCACTTGAGTTGGCC+TGG - chr3_3:65917870-65917889 Msa0465510:CDS 40.0%
CCAAACCGAAATTGATATCG+GGG + chr3_3:65917952-65917971 None:intergenic 40.0%
GCCAAACCGAAATTGATATC+GGG + chr3_3:65917953-65917972 None:intergenic 40.0%
!! CAATTTCGGTTTGGCTAGTT+TGG - chr3_3:65917958-65917977 Msa0465510:exon 40.0%
ATTGAAACGTGAAGGGGTTG+TGG + chr3_3:65911679-65911698 None:intergenic 45.0%
GGGTGAAGATTGAAACGTGA+AGG + chr3_3:65911687-65911706 None:intergenic 45.0%
CATCGTCTCTTAACTGGGAT+TGG - chr3_3:65911817-65911836 Msa0465510:three_prime_UTR 45.0%
GTGTTAACGAGCTCCACTTA+AGG - chr3_3:65912162-65912181 Msa0465510:three_prime_UTR 45.0%
TGAACCCAAGTTCGATTCCT+TGG - chr3_3:65912199-65912218 Msa0465510:three_prime_UTR 45.0%
TCCTCCAAGGAATCGAACTT+GGG + chr3_3:65912206-65912225 None:intergenic 45.0%
TTCCTCCAAGGAATCGAACT+TGG + chr3_3:65912207-65912226 None:intergenic 45.0%
GGAGGAAGTGGAATTATTCC+TGG - chr3_3:65912220-65912239 Msa0465510:three_prime_UTR 45.0%
TGTTAAACCTCCGGTTCCTA+GGG + chr3_3:65912297-65912316 None:intergenic 45.0%
TTGTTAAACCTCCGGTTCCT+AGG + chr3_3:65912298-65912317 None:intergenic 45.0%
! GGTCAGAGCAGATTTTGTCT+TGG - chr3_3:65912733-65912752 Msa0465510:intron 45.0%
AGTTCACACCCACACACAAT+TGG - chr3_3:65913224-65913243 Msa0465510:intron 45.0%
ACACCCACACACAATTGGTT+GGG - chr3_3:65913229-65913248 Msa0465510:intron 45.0%
! ACCTTTTTATGCAGGTGGGT+TGG - chr3_3:65913464-65913483 Msa0465510:intron 45.0%
ACCAACCCACCTGCATAAAA+AGG + chr3_3:65913468-65913487 None:intergenic 45.0%
!!! TTTTTATGCAGGTGGGTTGG+TGG - chr3_3:65913467-65913486 Msa0465510:intron 45.0%
!!! TTTTATGCAGGTGGGTTGGT+GGG - chr3_3:65913468-65913487 Msa0465510:intron 45.0%
TTGGCAAGAGTTACAGTCCA+AGG - chr3_3:65913563-65913582 Msa0465510:intron 45.0%
TAGCAAGTAAAGATGGGGGA+AGG + chr3_3:65914132-65914151 None:intergenic 45.0%
TAAAAGGCCATCGAAACCAG+AGG - chr3_3:65914150-65914169 Msa0465510:intron 45.0%
! TTCTCAACCTCTGGTTTCGA+TGG + chr3_3:65914160-65914179 None:intergenic 45.0%
AGAACCTGAAGACAAGGTTG+AGG - chr3_3:65914201-65914220 Msa0465510:intron 45.0%
TGTTGAAGAGGAAGCAAGAG+AGG - chr3_3:65914342-65914361 Msa0465510:intron 45.0%
GTTGAAGAGGAAGCAAGAGA+GGG - chr3_3:65914343-65914362 Msa0465510:intron 45.0%
!! GATTCTAGAGTGACCTCATC+AGG + chr3_3:65914442-65914461 None:intergenic 45.0%
!! GAGGTCACTCTAGAATCTGA+CGG - chr3_3:65914445-65914464 Msa0465510:intron 45.0%
TGATGCCTCGGATGAAGAAA+AGG - chr3_3:65914468-65914487 Msa0465510:intron 45.0%
CAATATCAAAGTGGCAGCAC+TGG - chr3_3:65914663-65914682 Msa0465510:intron 45.0%
AAGGCCTTAGCAACATCAGA+AGG + chr3_3:65914715-65914734 None:intergenic 45.0%
! CTGATGTTGCTAAGGCCTTT+TGG - chr3_3:65914716-65914735 Msa0465510:intron 45.0%
! GATGTTGCTAAGGCCTTTTG+GGG - chr3_3:65914718-65914737 Msa0465510:intron 45.0%
! TACTTGACACCCCCAGATTT+TGG + chr3_3:65915203-65915222 None:intergenic 45.0%
TGGGATATGTAGTTTCCGTC+TGG - chr3_3:65915518-65915537 Msa0465510:intron 45.0%
ACAGCTGAATACCACGCATT+GGG + chr3_3:65915544-65915563 None:intergenic 45.0%
CTAATGGCCTCACTTGACTT+AGG - chr3_3:65915600-65915619 Msa0465510:intron 45.0%
GAAAGGATCAAAATCCCCTC+TGG + chr3_3:65915725-65915744 None:intergenic 45.0%
!! GGGGATTTTGATCCTTTCGA+CGG - chr3_3:65915727-65915746 Msa0465510:intron 45.0%
GCAGAGCAGAGCTTATAGAA+TGG - chr3_3:65915794-65915813 Msa0465510:intron 45.0%
GGACTCTATGTTGGTGCATT+TGG - chr3_3:65915837-65915856 Msa0465510:intron 45.0%
GTTGGTGCATTTGGACCTTA+TGG - chr3_3:65915846-65915865 Msa0465510:intron 45.0%
CGATGCTCGAGAGATTGAAA+AGG + chr3_3:65916021-65916040 None:intergenic 45.0%
GTATCCTGATGAATTGGGAG+TGG - chr3_3:65916178-65916197 Msa0465510:intron 45.0%
! GGTCCAGCATGATGATGTAA+GGG + chr3_3:65916244-65916263 None:intergenic 45.0%
! AGGTCCAGCATGATGATGTA+AGG + chr3_3:65916245-65916264 None:intergenic 45.0%
! TCTCTAACAATACCGACTGC+CGG + chr3_3:65916434-65916453 None:intergenic 45.0%
! TTCTGCTGTGTTTAGGGCAT+GGG - chr3_3:65917147-65917166 Msa0465510:intron 45.0%
AGATCTGCTCCTTTCATGTG+TGG + chr3_3:65917174-65917193 None:intergenic 45.0%
CACATGAAAGGAGCAGATCT+TGG - chr3_3:65917174-65917193 Msa0465510:intron 45.0%
!! GATAGTTTTACTCGACACGC+AGG - chr3_3:65917368-65917387 Msa0465510:intron 45.0%
TACTGACAAAACAGTGTGCC+AGG - chr3_3:65917489-65917508 Msa0465510:intron 45.0%
! CTGTGTGCCTTCTTGTTTGT+GGG - chr3_3:65917559-65917578 Msa0465510:intron 45.0%
TTGATGCAGGCAGAATACCT+GGG + chr3_3:65917589-65917608 None:intergenic 45.0%
TTTGATGCAGGCAGAATACC+TGG + chr3_3:65917590-65917609 None:intergenic 45.0%
AGGTATTCTGCCTGCATCAA+AGG - chr3_3:65917589-65917608 Msa0465510:intron 45.0%
CCCCGATATCAATTTCGGTT+TGG - chr3_3:65917949-65917968 Msa0465510:CDS 45.0%
!!! TTTTAATTTATTTTTCTAAT+AGG - chr3_3:65912055-65912074 Msa0465510:three_prime_UTR 5.0%
!!! TTTAATTTATTTTTCTAATA+GGG - chr3_3:65912056-65912075 Msa0465510:three_prime_UTR 5.0%
!!! TAAAATGTATTTTTTTTTTT+TGG - chr3_3:65916767-65916786 Msa0465510:intron 5.0%
!!! ATTAAAGTTTTATTTTTTAT+AGG - chr3_3:65917624-65917643 Msa0465510:intron 5.0%
TGGTGCATCGTAGAAAGTGG+GGG + chr3_3:65911779-65911798 None:intergenic 50.0%
GTGGTGCATCGTAGAAAGTG+GGG + chr3_3:65911780-65911799 None:intergenic 50.0%
GGTGGTGCATCGTAGAAAGT+GGG + chr3_3:65911781-65911800 None:intergenic 50.0%
! TGGTGGTGCATCGTAGAAAG+TGG + chr3_3:65911782-65911801 None:intergenic 50.0%
ACCCAAGTTCGATTCCTTGG+AGG - chr3_3:65912202-65912221 Msa0465510:three_prime_UTR 50.0%
GTTCGATTCCTTGGAGGAAG+TGG - chr3_3:65912208-65912227 Msa0465510:three_prime_UTR 50.0%
TTACACTTCCGACCAAGGTC+CGG - chr3_3:65912254-65912273 Msa0465510:three_prime_UTR 50.0%
CTAGTAATCCGGACCTTGGT+CGG + chr3_3:65912265-65912284 None:intergenic 50.0%
GTTAAACCTCCGGTTCCTAG+GGG + chr3_3:65912296-65912315 None:intergenic 50.0%
! ATGGTAGCGCTCATCGTCTA+TGG + chr3_3:65912829-65912848 None:intergenic 50.0%
CAGATACACTGGAAGTGGAC+TGG - chr3_3:65912866-65912885 Msa0465510:intron 50.0%
CACACCCACACACAATTGGT+TGG - chr3_3:65913228-65913247 Msa0465510:intron 50.0%
GTATTAGTCCTGGTATGGGC+AGG - chr3_3:65913536-65913555 Msa0465510:intron 50.0%
TTGGCTCCCCAATCACTTGA+AGG + chr3_3:65913614-65913633 None:intergenic 50.0%
AGTTGCTCACGGCATCTACT+GGG - chr3_3:65913658-65913677 Msa0465510:CDS 50.0%
GTGTATTTGCGACGAGCCAA+AGG - chr3_3:65914091-65914110 Msa0465510:intron 50.0%
GGTGCAAGAACCTGAAGACA+AGG - chr3_3:65914195-65914214 Msa0465510:intron 50.0%
CTCTCCTCAACCTTGTCTTC+AGG + chr3_3:65914208-65914227 None:intergenic 50.0%
AGAATCTGACGGTGATGCCT+CGG - chr3_3:65914456-65914475 Msa0465510:intron 50.0%
!! ATCTGGGGGTGTCAAGTAAG+TGG - chr3_3:65915205-65915224 Msa0465510:CDS 50.0%
GACAGCTGAATACCACGCAT+TGG + chr3_3:65915545-65915564 None:intergenic 50.0%
TGATCCTTTCGACGGTGAGT+TGG - chr3_3:65915735-65915754 Msa0465510:intron 50.0%
TAAGCCAACTCACCGTCGAA+AGG + chr3_3:65915742-65915761 None:intergenic 50.0%
GGGGATCTTAATGTTCCTGC+AGG - chr3_3:65915981-65916000 Msa0465510:intron 50.0%
TCTTAATGTTCCTGCAGGCC+AGG - chr3_3:65915986-65916005 Msa0465510:intron 50.0%
ATCAGGATACAGTCCACGGT+TGG + chr3_3:65916168-65916187 None:intergenic 50.0%
AAAGCTATTCCACCGGCAGT+CGG - chr3_3:65916419-65916438 Msa0465510:intron 50.0%
CAAAGTCTGCTATTCTCCCC+TGG + chr3_3:65916963-65916982 None:intergenic 50.0%
CAGGGGAGAATAGCAGACTT+TGG - chr3_3:65916961-65916980 Msa0465510:intron 50.0%
! GTTCTGCTGTGTTTAGGGCA+TGG - chr3_3:65917146-65917165 Msa0465510:intron 50.0%
TTTGCTCGGGCACAGCATAA+AGG + chr3_3:65917203-65917222 None:intergenic 50.0%
TCTTTCTTCCCTGACGTTGG+TGG - chr3_3:65917284-65917303 Msa0465510:intron 50.0%
CTTTCTTCCCTGACGTTGGT+GGG - chr3_3:65917285-65917304 Msa0465510:intron 50.0%
!! GTTGGTGGGTTGGAGTATGA+AGG - chr3_3:65917299-65917318 Msa0465510:intron 50.0%
! GCTGTGTGCCTTCTTGTTTG+TGG - chr3_3:65917558-65917577 Msa0465510:intron 50.0%
GGGACTTCCCACAAACAAGA+AGG + chr3_3:65917569-65917588 None:intergenic 50.0%
! TCTTGTTTGTGGGAAGTCCC+AGG - chr3_3:65917569-65917588 Msa0465510:intron 50.0%
! TAGCTCGGTTGGTGCATTGA+GGG + chr3_3:65917726-65917745 None:intergenic 50.0%
! ATAGCTCGGTTGGTGCATTG+AGG + chr3_3:65917727-65917746 None:intergenic 50.0%
CTAGTCTCGCGTAGATAGCT+CGG + chr3_3:65917741-65917760 None:intergenic 50.0%
!! AATCACTTGAGTTGGCCTGG+TGG - chr3_3:65917873-65917892 Msa0465510:CDS 50.0%
!! GTGGTGTTGGCTTAAGACCT+TGG - chr3_3:65917892-65917911 Msa0465510:CDS 50.0%
CTTGAGAGGAGCAAACTCCA+AGG + chr3_3:65917912-65917931 None:intergenic 50.0%
! TTTTCTGTTGGCCACGCGCA+CGG + chr3_3:65911473-65911492 None:intergenic 55.0%
ATCGTAGAAAGTGGGGGGTG+CGG + chr3_3:65911773-65911792 None:intergenic 55.0%
GGTGCATCGTAGAAAGTGGG+GGG + chr3_3:65911778-65911797 None:intergenic 55.0%
CGACCAAGGTCCGGATTACT+AGG - chr3_3:65912263-65912282 Msa0465510:three_prime_UTR 55.0%
CAGTTGCTCACGGCATCTAC+TGG - chr3_3:65913657-65913676 Msa0465510:CDS 55.0%
CAATGTTGAGGCGGCAACTG+AGG - chr3_3:65914246-65914265 Msa0465510:intron 55.0%
ATACCACGCATTGGGCCAGA+CGG + chr3_3:65915536-65915555 None:intergenic 55.0%
AACCGGATTGCAAGTCCCAG+AGG - chr3_3:65915706-65915725 Msa0465510:intron 55.0%
ACCGGATTGCAAGTCCCAGA+GGG - chr3_3:65915707-65915726 Msa0465510:intron 55.0%
TAATGTTCCTGCAGGCCAGG+TGG - chr3_3:65915989-65916008 Msa0465510:intron 55.0%
! CTAACAATACCGACTGCCGG+TGG + chr3_3:65916431-65916450 None:intergenic 55.0%
GGCATGGGACCACACATGAA+AGG - chr3_3:65917162-65917181 Msa0465510:intron 55.0%
ACTCCAACCCACCAACGTCA+GGG + chr3_3:65917295-65917314 None:intergenic 55.0%
TACTCCAACCCACCAACGTC+AGG + chr3_3:65917296-65917315 None:intergenic 55.0%
CTAGCGGCTTCCTTTGATGC+AGG + chr3_3:65917602-65917621 None:intergenic 55.0%
TCTCGCGTAGATAGCTCGGT+TGG + chr3_3:65917737-65917756 None:intergenic 55.0%
!! TTGAGTTGGCCTGGTGGTGT+TGG - chr3_3:65917879-65917898 Msa0465510:CDS 55.0%
GGTCTTAAGCCAACACCACC+AGG + chr3_3:65917891-65917910 None:intergenic 55.0%
GGGCCTAGTAATCCGGACCT+TGG + chr3_3:65912269-65912288 None:intergenic 60.0%
GGGAGAGGGGCCTAGTAATC+CGG + chr3_3:65912276-65912295 None:intergenic 60.0%
TTACTAGGCCCCTCTCCCCT+AGG - chr3_3:65912278-65912297 Msa0465510:three_prime_UTR 60.0%
!! ATGCAGGTGGGTTGGTGGGT+AGG - chr3_3:65913472-65913491 Msa0465510:intron 60.0%
!! TGCAGGTGGGTTGGTGGGTA+GGG - chr3_3:65913473-65913492 Msa0465510:intron 60.0%
CCAACGAACCTGCCCATACC+AGG + chr3_3:65913547-65913566 None:intergenic 60.0%
CCTGGTATGGGCAGGTTCGT+TGG - chr3_3:65913544-65913563 Msa0465510:intron 60.0%
GTTGAGGCGGCAACTGAGGA+TGG - chr3_3:65914250-65914269 Msa0465510:intron 60.0%
TTTCCGTCTGGCCCAATGCG+TGG - chr3_3:65915530-65915549 Msa0465510:intron 60.0%
!! CCCCTCTGGGACTTGCAATC+CGG + chr3_3:65915711-65915730 None:intergenic 60.0%
CCGGATTGCAAGTCCCAGAG+GGG - chr3_3:65915708-65915727 Msa0465510:intron 60.0%
GCATAAACCACCTGGCCTGC+AGG + chr3_3:65915999-65916018 None:intergenic 60.0%
ACAGTCCACGGTTGGCGTTG+CGG + chr3_3:65916160-65916179 None:intergenic 60.0%
! CTTCCCTGACGTTGGTGGGT+TGG - chr3_3:65917289-65917308 Msa0465510:intron 60.0%
CTCCGGTTCCTAGGGGAGAG+GGG + chr3_3:65912289-65912308 None:intergenic 65.0%
CCTCCGGTTCCTAGGGGAGA+GGG + chr3_3:65912290-65912309 None:intergenic 65.0%
ACCTCCGGTTCCTAGGGGAG+AGG + chr3_3:65912291-65912310 None:intergenic 65.0%
!! GTGGCAGCACTGGCAGCACA+AGG - chr3_3:65914673-65914692 Msa0465510:intron 65.0%
GTCAACCGCAACGCCAACCG+TGG - chr3_3:65916152-65916171 Msa0465510:intron 65.0%
GGCCCCTCTCCCCTAGGAAC+CGG - chr3_3:65912284-65912303 Msa0465510:three_prime_UTR 70.0%
CCCTCTCCCCTAGGAACCGG+AGG - chr3_3:65912287-65912306 Msa0465510:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 65911461 65918134 65911461 ID=Msa0465510;Name=Msa0465510
chr3_3 mRNA 65911461 65918134 65911461 ID=Msa0465510-mRNA-1;Parent=Msa0465510;Name=Msa0465510-mRNA-1;_AED=0.08;_eAED=0.08;_QI=163|0.9|0.90|1|0.9|0.90|11|871|621
chr3_3 exon 65911461 65912433 65911461 ID=Msa0465510-mRNA-1:exon:14810;Parent=Msa0465510-mRNA-1
chr3_3 exon 65912560 65912652 65912560 ID=Msa0465510-mRNA-1:exon:14809;Parent=Msa0465510-mRNA-1
chr3_3 exon 65913396 65913470 65913396 ID=Msa0465510-mRNA-1:exon:14808;Parent=Msa0465510-mRNA-1
chr3_3 exon 65913588 65913757 65913588 ID=Msa0465510-mRNA-1:exon:14807;Parent=Msa0465510-mRNA-1
chr3_3 exon 65913847 65913973 65913847 ID=Msa0465510-mRNA-1:exon:14806;Parent=Msa0465510-mRNA-1
chr3_3 exon 65914833 65915507 65914833 ID=Msa0465510-mRNA-1:exon:14805;Parent=Msa0465510-mRNA-1
chr3_3 exon 65915858 65915939 65915858 ID=Msa0465510-mRNA-1:exon:14804;Parent=Msa0465510-mRNA-1
chr3_3 exon 65916011 65916117 65916011 ID=Msa0465510-mRNA-1:exon:14803;Parent=Msa0465510-mRNA-1
chr3_3 exon 65916708 65916773 65916708 ID=Msa0465510-mRNA-1:exon:14802;Parent=Msa0465510-mRNA-1
chr3_3 exon 65916862 65916951 65916862 ID=Msa0465510-mRNA-1:exon:14801;Parent=Msa0465510-mRNA-1
chr3_3 exon 65917693 65918134 65917693 ID=Msa0465510-mRNA-1:exon:14800;Parent=Msa0465510-mRNA-1
chr3_3 five_prime_UTR 65917972 65918134 65917972 ID=Msa0465510-mRNA-1:five_prime_utr;Parent=Msa0465510-mRNA-1
chr3_3 CDS 65917693 65917971 65917693 ID=Msa0465510-mRNA-1:cds;Parent=Msa0465510-mRNA-1
chr3_3 CDS 65916862 65916951 65916862 ID=Msa0465510-mRNA-1:cds;Parent=Msa0465510-mRNA-1
chr3_3 CDS 65916708 65916773 65916708 ID=Msa0465510-mRNA-1:cds;Parent=Msa0465510-mRNA-1
chr3_3 CDS 65916011 65916117 65916011 ID=Msa0465510-mRNA-1:cds;Parent=Msa0465510-mRNA-1
chr3_3 CDS 65915858 65915939 65915858 ID=Msa0465510-mRNA-1:cds;Parent=Msa0465510-mRNA-1
chr3_3 CDS 65914833 65915507 65914833 ID=Msa0465510-mRNA-1:cds;Parent=Msa0465510-mRNA-1
chr3_3 CDS 65913847 65913973 65913847 ID=Msa0465510-mRNA-1:cds;Parent=Msa0465510-mRNA-1
chr3_3 CDS 65913588 65913757 65913588 ID=Msa0465510-mRNA-1:cds;Parent=Msa0465510-mRNA-1
chr3_3 CDS 65913396 65913470 65913396 ID=Msa0465510-mRNA-1:cds;Parent=Msa0465510-mRNA-1
chr3_3 CDS 65912560 65912652 65912560 ID=Msa0465510-mRNA-1:cds;Parent=Msa0465510-mRNA-1
chr3_3 CDS 65912332 65912433 65912332 ID=Msa0465510-mRNA-1:cds;Parent=Msa0465510-mRNA-1
chr3_3 three_prime_UTR 65911461 65912331 65911461 ID=Msa0465510-mRNA-1:three_prime_utr;Parent=Msa0465510-mRNA-1
Gene Sequence

>Msa0465510

ATGGTGATGGCTTCATTGGGTGTATCCCAAGCCATCTTCTTCTCTAACACAACCACAACCCCTTCACGTTTCAATCTTCACCCTAATAAACCACCCACCTTTTCTTTTCAAAACAACCCTTCAATCTCAGTCTTTTCAAGAAGGAACCGCACCCCCCACTTTCTACGATGCACCACCAATTCCACCAACAATACATCGTCTCTTAACTGGGATTGGAATCGTTGGTGTCGCCATTTCGATGATATTGAACAGGCTGAAAGCTTTGCATCTCTTCTCAAGGAAGAGTTTCAAGAAGCAGCAAAGCTAAAAAGGGCTATAGTTGAAGCGACATCCAAGGATAGTGTTGCTGAAATTATGTCTCAGTTGAAGAATGCCATAGACGATGAGCGCTACCATGATGCTTCAAAATTATGCAGATACACTGGAAGTGGACTGGTGGGTTGGTGGGTAGGGTACTCAAAAAATTCAGAGGACCCTTTTGGTAGAATAATACGTATTAGTCCTGGTATGGGCAGGTTCGTTGGCAAGAGTTACAGTCCAAGACAGTTGCTCACGGCATCTACTGGGACGCCATTATTTGAAATTTATGTGGTGAAAAATGCTGACGACACATATCATATGCAGGTAGTGTATTTGCGACGAGCCAAAGGAAATTCAACGAGTAACCTTCCCCCATCTTTACTTGCTAAAAGGCCATCGAAACCAGAGGTTGAGAATTTGTCTTCAGTTGAGGTGCAAGAACCTGAAGACAAGGTTGAGGAGAGAAACGATGAGAAAAACAGCAATGTTGAGGCGGCAACTGAGGATGGCATTAAAAGTGTCATAAATTTTCTTAAAGAAAAAATTCCAGGGTTGAAAGTCAAAGTTATGAACATTAATGTTGAAGAGGAAGCAAGAGAGGGTAGTGATTCTATTAAACAAATCATGGAGGAAGATGGTAATAAAACTGATGGGGAAGATGATAATCTGGATGAACCTGATGAGGTCACTCTAGAATCTGACGGTGATGCCTCGGATGAAGAAAAGGATTTAGATATGAAGCTCTTTATTGGCGGAATTGTACACAACAATGAAGATAATTCTTCTAAGGATGAATTTATACGTCTTCCAGCGGAAATAAAGAACATGGAAAGGGAATCTTTCCTCTTACATATACCTAGGAGAAATCTCGATAATGACAGGAAAGAAGATAAAGTTCGCAATATCAAAGTGGCAGCACTGGCAGCACAAGGAATCTCAGAGCTTATGCCTTCTGATGTTGCTAAGGCCTTTTGGGGTTCTGATAAAGTCTCTTCTAAGGTATCCAAAAGCATGCGTGAAATTGTCAAACTTGCTATCAGCCAAGCACAGAAAAAAAGTAGATTATCCGAAGATACATATTTTAACCGGATTGCAAGTCCCAGAGGGGATTTTGATCCTTTCGACGGACTCTATGTTGGTGCATTTGGACCTTATGGCATCGAAATAGTCCAATTGAGACGAAAATTTGGACATTGGAATGATGTGGACAGTGAAAACAGCACTTCAGATATCGAGTTTTTTGAATATGTAGAGGCAGTAAAATTGACTGGGGATCTTAATGTTCCTGCAGGCCAGGTGACATTCCGTGCTAAAATTGGTAAAGTCAACCGCAACGCCAACCGTGGACTGTATCCTGATGAATTGGGAGTGAATGCAAGTTATAAAGGCCAGGGGAGAATAGCAGACTTTGGTTTTCGAAATCCAAAATGGGTTGATGGGGAATTGCTTCAACTTAATGGCAAGGGCATGGGACCACACATGAAAGGAGCAGATCTTGGTTTCCTTTATGCTGTGCCCGAGCAAAGTTTTCTTGTGCTATTCAACCGATTGAAACTACCTGAGTAA
Protein sequence

>Msa0465510

MVMASLGVSQAIFFSNTTTTPSRFNLHPNKPPTFSFQNNPSISVFSRRNRTPHFLRCTTNSTNNTSSLNWDWNRWCRHFDDIEQAESFASLLKEEFQEAAKLKRAIVEATSKDSVAEIMSQLKNAIDDERYHDASKLCRYTGSGLVGWWVGYSKNSEDPFGRIIRISPGMGRFVGKSYSPRQLLTASTGTPLFEIYVVKNADDTYHMQVVYLRRAKGNSTSNLPPSLLAKRPSKPEVENLSSVEVQEPEDKVEERNDEKNSNVEAATEDGIKSVINFLKEKIPGLKVKVMNINVEEEAREGSDSIKQIMEEDGNKTDGEDDNLDEPDEVTLESDGDASDEEKDLDMKLFIGGIVHNNEDNSSKDEFIRLPAEIKNMERESFLLHIPRRNLDNDRKEDKVRNIKVAALAAQGISELMPSDVAKAFWGSDKVSSKVSKSMREIVKLAISQAQKKSRLSEDTYFNRIASPRGDFDPFDGLYVGAFGPYGIEIVQLRRKFGHWNDVDSENSTSDIEFFEYVEAVKLTGDLNVPAGQVTFRAKIGKVNRNANRGLYPDELGVNASYKGQGRIADFGFRNPKWVDGELLQLNGKGMGPHMKGADLGFLYAVPEQSFLVLFNRLKLPE*