AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0034340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0034340 MtrunA17_Chr1g0196561 93.137 306 21 0 1 306 1 306 0.0 583
Msa0034340 MtrunA17_Chr1g0196571 51.136 264 95 3 8 249 301 552 4.08e-72 234
Msa0034340 MtrunA17_Chr1g0196571 48.276 261 104 3 11 241 11 270 1.71e-66 219
Msa0034340 MtrunA17_Chr1g0196591 41.038 212 53 2 55 240 1 166 3.49e-40 141
Msa0034340 MtrunA17_Chr1g0196581 49.630 135 51 2 46 163 21 155 1.63e-34 124
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0034340 AT1G63900.1 67.532 308 96 2 3 306 1 308 2.12e-150 427
Msa0034340 AT1G63900.2 70.677 266 76 1 3 266 1 266 3.35e-137 391
Msa0034340 AT1G59560.3 48.571 315 141 5 3 307 1 304 3.78e-96 288
Msa0034340 AT1G59560.1 48.571 315 141 5 3 307 1 304 5.60e-95 286
Msa0034340 AT1G59560.2 50.355 282 127 4 3 274 1 279 5.10e-88 266
Msa0034340 AT1G59560.4 50.936 267 118 4 3 259 1 264 7.35e-85 258

Find 132 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTTGGTTGTTGCAATTTC+TGG 0.072072 1_1:+62281831 Msa0034340:CDS
AATATAATAGTTTGATTAAT+TGG 0.078879 1_1:-62280490 None:intergenic
TGTAGGTATGCACTTCTTAT+TGG 0.191732 1_1:+62285035 Msa0034340:three_prime_UTR
ACTCTGTTTGCCTGCGTGTT+AGG 0.197847 1_1:-62280368 None:intergenic
TAGTTTGATTAATTGGAAAA+TGG 0.234519 1_1:-62280483 None:intergenic
AGGCATATTACACACAAATT+TGG 0.240221 1_1:-62283980 None:intergenic
TGACCTACTGTTGGTTCTTT+TGG 0.248154 1_1:+62284818 Msa0034340:three_prime_UTR
TAGAAAGAAGATACCATATA+TGG 0.273447 1_1:-62284895 None:intergenic
AATGAGTTCGTCAATTGTTT+TGG 0.273626 1_1:-62283422 None:intergenic
ACTTGTTCTTCATTCCTTGT+AGG 0.284733 1_1:+62285018 Msa0034340:three_prime_UTR
CCACTGAACTCGCAGCTAAT+TGG 0.286488 1_1:-62281873 None:intergenic
GTTTATCAGATGGTGCTAAA+AGG 0.287406 1_1:+62283945 Msa0034340:CDS
GAAAACGATAGAAAGGGTTT+TGG 0.289993 1_1:-62280578 None:intergenic
GCTGCTGCTCTTTGCCTTCT+CGG 0.290499 1_1:+62280691 Msa0034340:CDS
CTCTGTTTGCCTGCGTGTTA+GGG 0.294063 1_1:-62280367 None:intergenic
TGGAAAATGGAAAAGGAATT+AGG 0.296016 1_1:-62280470 None:intergenic
ATATTCTTAAATCTGTTAAC+CGG 0.312636 1_1:+62280853 Msa0034340:CDS
GACGAACTCATTGCAAATCT+TGG 0.313400 1_1:+62283433 Msa0034340:CDS
GTTACTCCAATTCCCATATA+TGG 0.325828 1_1:+62284882 Msa0034340:three_prime_UTR
TGACCAGTTGTCCTCTTTGC+CGG 0.326267 1_1:+62284591 Msa0034340:CDS
GCTGCAGCTGCTAAGATATC+TGG 0.346053 1_1:+62283813 Msa0034340:CDS
AACACAATGATGCTGGTTCC+TGG 0.349181 1_1:+62282060 Msa0034340:CDS
AAGACGACGTCGCAACGAAT+TGG 0.350234 1_1:+62283622 Msa0034340:CDS
AAGATACCATATATGGGAAT+TGG 0.356718 1_1:-62284888 None:intergenic
TATTTAATGTGTTAGGATGA+TGG 0.360785 1_1:+62282481 Msa0034340:intron
TGAATCCAACAGTAACAATT+TGG 0.363078 1_1:+62284700 Msa0034340:three_prime_UTR
GGAGTAACATGCACCTCGTT+TGG 0.370725 1_1:-62284867 None:intergenic
GTTGGAGCTCAGGGTGCTAC+TGG 0.381679 1_1:+62282523 Msa0034340:CDS
AAGATATCTGGACAAGATAA+TGG 0.385392 1_1:+62283825 Msa0034340:CDS
TCAAATGTCTCACGTGCAAC+AGG 0.406895 1_1:-62282556 None:intergenic
TAACGAAGTTCCTTGGTATC+TGG 0.413346 1_1:+62282115 Msa0034340:CDS
GGAACTTCCTTGACTGTTGT+TGG 0.413844 1_1:+62282800 Msa0034340:CDS
GAAAGGACAAAAGAAAGAAA+TGG 0.417549 1_1:-62280408 None:intergenic
GATGTATCGAATAGCATGAT+TGG 0.432216 1_1:-62283594 None:intergenic
TGATTCTGTCTCAGGTGAAA+TGG 0.436278 1_1:+62283916 Msa0034340:intron
CCAAGGAACTTCGTTACTCC+TGG 0.438918 1_1:-62282108 None:intergenic
GATTAATTGGAAAATGGAAA+AGG 0.439528 1_1:-62280477 None:intergenic
CTTAGTGTTGTTGTTGAAGA+TGG 0.442369 1_1:+62280630 Msa0034340:exon
TGGAGTTAAAAGAATTGAAC+GGG 0.443028 1_1:+62282766 Msa0034340:CDS
ACTGGTCGTGTGCGTGTAGT+TGG 0.445032 1_1:+62282505 Msa0034340:CDS
TCGAATTGAAAACGATAGAA+AGG 0.445144 1_1:-62280585 None:intergenic
ATTGACCAAATTGTTACTGT+TGG 0.451009 1_1:-62284705 None:intergenic
ACGAACTCATTGCAAATCTT+GGG 0.456055 1_1:+62283434 Msa0034340:CDS
TGCGAGTTCAGTGGTTTAAG+AGG 0.458613 1_1:+62281882 Msa0034340:CDS
TCTCCGGCAAAGAGGACAAC+TGG 0.462158 1_1:-62284594 None:intergenic
TTTATCAGATGGTGCTAAAA+GGG 0.462624 1_1:+62283946 Msa0034340:CDS
CGAATTGAAAACGATAGAAA+GGG 0.467662 1_1:-62280584 None:intergenic
CGTGAGACATTTGAAGAGTC+AGG 0.472588 1_1:+62282565 Msa0034340:CDS
ATGGTTCCATGGCGTGGCAT+CGG 0.473635 1_1:+62280655 Msa0034340:CDS
GTCACTTGTACGCGGAACAT+TGG 0.475799 1_1:+62282591 Msa0034340:CDS
TGTGCGTGTAGTTGGAGCTC+AGG 0.476871 1_1:+62282513 Msa0034340:CDS
CCGCCTTCTCTATCTGTCTC+CGG 0.478984 1_1:-62284610 None:intergenic
TGGTATAAGTGCACCTCTGC+GGG 0.485270 1_1:+62283542 Msa0034340:CDS
TGCCTTCTCGGTAGAACCAC+TGG 0.490436 1_1:+62280703 Msa0034340:CDS
TCTGCGGGTTTGACAGTGTT+GGG 0.495785 1_1:+62283557 Msa0034340:CDS
GTTAATCAGCTGAGGGAGCT+AGG 0.497158 1_1:+62280876 Msa0034340:CDS
CATTGCAAATCTTGGGAGAT+GGG 0.502814 1_1:+62283441 Msa0034340:CDS
TTTCTCAAACACAATGATGC+TGG 0.502960 1_1:+62282053 Msa0034340:CDS
AGAGACATAAAATGGCCCTT+TGG 0.504948 1_1:-62283398 None:intergenic
GACAAAAGAAAGAAATGGAA+TGG 0.506355 1_1:-62280403 None:intergenic
ACAGTCAAGGAAGTTCCAAC+TGG 0.510024 1_1:-62282794 None:intergenic
AGAAAGAAGATACCATATAT+GGG 0.511242 1_1:-62284894 None:intergenic
TCATTGCAAATCTTGGGAGA+TGG 0.515552 1_1:+62283440 Msa0034340:CDS
AGGAATTAGGAGGAAGGTGA+AGG 0.515951 1_1:-62280457 None:intergenic
TAAGAAGTAAAGTGAAGGAA+AGG 0.519136 1_1:-62280425 None:intergenic
CTCTGCGGGTTTGACAGTGT+TGG 0.520983 1_1:+62283556 Msa0034340:CDS
GACATAAAATGGCCCTTTGG+AGG 0.521815 1_1:-62283395 None:intergenic
TAACGCAGAATCTTGTATCC+AGG 0.528211 1_1:-62282078 None:intergenic
CAAATCTTGGGAGATGGGCG+AGG 0.528389 1_1:+62283446 Msa0034340:CDS
ATGTGTTAGGATGATGGAAC+TGG 0.530547 1_1:+62282487 Msa0034340:intron
CGAATTCAGCGACCCTCCAA+AGG 0.530981 1_1:+62283382 Msa0034340:CDS
TTCCTTGACTGTTGTTGGTG+AGG 0.537687 1_1:+62282805 Msa0034340:CDS
GGATTATCTACAAGGTCTAA+AGG 0.538007 1_1:+62282612 Msa0034340:CDS
GGAGGGTCGCTGAATTCGAA+TGG 0.538766 1_1:-62283377 None:intergenic
TTATCAAAATAGAAATTACA+AGG 0.543567 1_1:-62285070 None:intergenic
GGATGAAGAAATATTGCCCT+TGG 0.545092 1_1:+62281815 Msa0034340:CDS
TCATGCTATTCGATACATCA+TGG 0.545815 1_1:+62283598 Msa0034340:CDS
GTTGCAATTTCTGGAAGAGC+GGG 0.547006 1_1:+62281840 Msa0034340:CDS
ATTCTGCGTTAATGCAATCC+AGG 0.550521 1_1:+62282090 Msa0034340:CDS
CCAGGAGTAACGAAGTTCCT+TGG 0.551865 1_1:+62282108 Msa0034340:CDS
TTGGAGTTAAAAGAATTGAA+CGG 0.557101 1_1:+62282765 Msa0034340:CDS
CAAGGAATGAAGAACAAGTC+GGG 0.557959 1_1:-62285014 None:intergenic
GTGTGTAATATGCCTCGAGC+AGG 0.564370 1_1:+62283988 Msa0034340:CDS
GACACAAGATGTAACTTCCG+TGG 0.565600 1_1:+62284937 Msa0034340:three_prime_UTR
CTGTTTGCCTGCGTGTTAGG+GGG 0.566070 1_1:-62280365 None:intergenic
ACATAAAATGGCCCTTTGGA+GGG 0.569737 1_1:-62283394 None:intergenic
CCAGAAATTGCAACAACCAA+GGG 0.569758 1_1:-62281831 None:intergenic
TATTCTTAAATCTGTTAACC+GGG 0.572014 1_1:+62280854 Msa0034340:CDS
CAACAACCGATGCCACGCCA+TGG 0.573971 1_1:-62280661 None:intergenic
TCCAGAAATTGCAACAACCA+AGG 0.576564 1_1:-62281832 None:intergenic
TGAAGATGGCGATGGTTCCA+TGG 0.576907 1_1:+62280644 Msa0034340:exon
ATAAGAAGTGCATACCTACA+AGG 0.577898 1_1:-62285032 None:intergenic
TCTGTTTGCCTGCGTGTTAG+GGG 0.578488 1_1:-62280366 None:intergenic
GTGCGTGTAGTTGGAGCTCA+GGG 0.583075 1_1:+62282514 Msa0034340:CDS
ATTGAACGGGTACTTCCAGT+TGG 0.583520 1_1:+62282779 Msa0034340:CDS
GAATTCAGCGACCCTCCAAA+GGG 0.585702 1_1:+62283383 Msa0034340:CDS
CCAATTAGCTGCGAGTTCAG+TGG 0.586654 1_1:+62281873 Msa0034340:CDS
TGTTGCAATTTCTGGAAGAG+CGG 0.586983 1_1:+62281839 Msa0034340:CDS
TTCTCGGTAGAACCACTGGC+AGG 0.588432 1_1:+62280707 Msa0034340:CDS
TGCCAGTGGTTCTACCGAGA+AGG 0.589297 1_1:-62280705 None:intergenic
CTTTCAAATAAGCATCAAGA+TGG 0.591865 1_1:+62284795 Msa0034340:three_prime_UTR
TGGAAAAGGAATTAGGAGGA+AGG 0.592909 1_1:-62280463 None:intergenic
CAGAATTATATTCCTGCTCG+AGG 0.598340 1_1:-62284000 None:intergenic
CATAAACTGACATAAGAATG+AGG 0.601522 1_1:+62284665 Msa0034340:exon
ATGGCGATGGTTCCATGGCG+TGG 0.610175 1_1:+62280649 Msa0034340:CDS
GGAACATTGGATTATCTACA+AGG 0.616721 1_1:+62282604 Msa0034340:CDS
GCTCCCTCAGCTGATTAACC+CGG 0.620987 1_1:-62280872 None:intergenic
TGATGTAAGAAGTAAAGTGA+AGG 0.620995 1_1:-62280430 None:intergenic
GTATGCTCAATACTCAATGA+CGG 0.624155 1_1:-62284643 None:intergenic
TACCTCACCAACAACAGTCA+AGG 0.626413 1_1:-62282807 None:intergenic
TCTATCTGTCTCCGGCAAAG+AGG 0.626419 1_1:-62284602 None:intergenic
GTGGTATAAGTGCACCTCTG+CGG 0.627269 1_1:+62283541 Msa0034340:CDS
GAATGAAGAACAAGTCGGGT+CGG 0.632180 1_1:-62285010 None:intergenic
TCAAGATGGTGACCTACTGT+TGG 0.634340 1_1:+62284809 Msa0034340:three_prime_UTR
ATGCCAAAAGAACCAACAGT+AGG 0.634805 1_1:-62284821 None:intergenic
ACAAGGAATGAAGAACAAGT+CGG 0.635855 1_1:-62285015 None:intergenic
CAGGCTGCTAAAGACGATGT+CGG 0.637534 1_1:+62283352 Msa0034340:intron
AAACTACACACCAGATACCA+AGG 0.639256 1_1:-62282125 None:intergenic
ATATAATTTAAAGAAATCCA+CGG 0.645109 1_1:-62284954 None:intergenic
TTGCCGGAGACAGATAGAGA+AGG 0.651134 1_1:+62284607 Msa0034340:CDS
GTTGTTGTTGAAGATGGCGA+TGG 0.654968 1_1:+62280636 Msa0034340:exon
TAACCGGGTTAATCAGCTGA+GGG 0.655570 1_1:+62280869 Msa0034340:CDS
TTAACCGGGTTAATCAGCTG+AGG 0.666652 1_1:+62280868 Msa0034340:CDS
AGACATTTGAAGAGTCAGGT+CGG 0.672395 1_1:+62282569 Msa0034340:CDS
CAACACTGTCAAACCCGCAG+AGG 0.681657 1_1:-62283555 None:intergenic
AAAATGGAAAAGGAATTAGG+AGG 0.682629 1_1:-62280467 None:intergenic
CCGGAGACAGATAGAGAAGG+CGG 0.686463 1_1:+62284610 Msa0034340:CDS
ATGGATGACAGTTTATCAGA+TGG 0.687669 1_1:+62283935 Msa0034340:CDS
AGGTGAAAACTACCTGCCAG+TGG 0.693394 1_1:-62280719 None:intergenic
ATATCTGGACAAGATAATGG+AGG 0.703748 1_1:+62283828 Msa0034340:CDS
TCAGGTCGGTCACTTGTACG+CGG 0.721899 1_1:+62282583 Msa0034340:CDS
AAATATTTACTATCCAAACG+AGG 0.732726 1_1:+62284854 Msa0034340:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAATAGTTTGATTAAT+TGG - chr1_1:62280493-62280512 None:intergenic 10.0%
!!! TTTTTTTTTAAATTTTGTGT+AGG + chr1_1:62280823-62280842 Msa0034340:intron 10.0%
!!! TTTTTTTTAAATTTTGTGTA+GGG + chr1_1:62280824-62280843 Msa0034340:intron 10.0%
!!! TTTTTTTTTCAAATTATTAC+TGG + chr1_1:62281060-62281079 Msa0034340:intron 10.0%
!!! ATTTTTTGTTATAATCATTT+TGG + chr1_1:62281548-62281567 Msa0034340:intron 10.0%
!! AAATAATTATTTAATGTGTT+AGG + chr1_1:62282474-62282493 Msa0034340:intron 10.0%
!!! AAGAGTTATTATTTTAAATA+AGG - chr1_1:62283320-62283339 None:intergenic 10.0%
!!! ATTGACTAAATTATTTTATT+AGG + chr1_1:62283519-62283538 Msa0034340:intron 10.0%
!!! AAAATTTTTCAGATTATTAA+AGG - chr1_1:62283780-62283799 None:intergenic 10.0%
!! TAAAAAGAAAATTGTAAAAC+AGG - chr1_1:62282020-62282039 None:intergenic 15.0%
!!! TGTTTTACAATTTTCTTTTT+AGG + chr1_1:62282019-62282038 Msa0034340:intron 15.0%
!!! TAAATATTGACTTTAAGAAA+GGG - chr1_1:62282207-62282226 None:intergenic 15.0%
!!! TTAAATATTGACTTTAAGAA+AGG - chr1_1:62282208-62282227 None:intergenic 15.0%
!!! TTTTTTGTTAATATTTTGCA+GGG - chr1_1:62282685-62282704 None:intergenic 15.0%
!!! TTTTTTTGTTAATATTTTGC+AGG - chr1_1:62282686-62282705 None:intergenic 15.0%
!! ATATAATTTAAAGAAATCCA+CGG - chr1_1:62284957-62284976 None:intergenic 15.0%
!! TTATCAAAATAGAAATTACA+AGG - chr1_1:62285073-62285092 None:intergenic 15.0%
!! TAGTTTGATTAATTGGAAAA+TGG - chr1_1:62280486-62280505 None:intergenic 20.0%
!! TATGAAATGGAACAAAAAAT+AGG - chr1_1:62280751-62280770 None:intergenic 20.0%
!! ATATTCTTAAATCTGTTAAC+CGG + chr1_1:62280853-62280872 Msa0034340:CDS 20.0%
!!! AAAAAATTGAAGCATTTAGA+CGG + chr1_1:62282700-62282719 Msa0034340:intron 20.0%
!!! AAATTTTATTTTCAGATGCT+TGG + chr1_1:62282746-62282765 Msa0034340:intron 20.0%
!! TTACAGAATTTCATTGTAAT+TGG + chr1_1:62282882-62282901 Msa0034340:intron 20.0%
!! ATATGCTTCTATGATATATA+TGG + chr1_1:62282985-62283004 Msa0034340:intron 20.0%
!!! CTGCTTTATATTTTTATATG+AGG + chr1_1:62283214-62283233 Msa0034340:intron 20.0%
!!! GACTAAATTATTTTATTAGG+TGG + chr1_1:62283522-62283541 Msa0034340:intron 20.0%
!!! TAATCTGAAAAATTTTATGC+AGG + chr1_1:62283784-62283803 Msa0034340:intron 20.0%
!!! AATCTGAAAAATTTTATGCA+GGG + chr1_1:62283785-62283804 Msa0034340:intron 20.0%
!!! TACAATATTTAAGTTTGCTA+TGG + chr1_1:62283867-62283886 Msa0034340:intron 20.0%
!! AATGAGATATTCTATATCAA+TGG - chr1_1:62284171-62284190 None:intergenic 20.0%
!! TAAAGATCATAAGAAAGAAA+TGG - chr1_1:62284195-62284214 None:intergenic 20.0%
!! ACATCACAATATAAATCTTA+GGG - chr1_1:62284527-62284546 None:intergenic 20.0%
! GATTAATTGGAAAATGGAAA+AGG - chr1_1:62280480-62280499 None:intergenic 25.0%
! CATTGAACTATGTTATGAAA+TGG - chr1_1:62280764-62280783 None:intergenic 25.0%
! TATTCTTAAATCTGTTAACC+GGG + chr1_1:62280854-62280873 Msa0034340:CDS 25.0%
!!! GTATTTTAAAGAAAGATTGC+CGG + chr1_1:62281224-62281243 Msa0034340:intron 25.0%
!!! AAGTTTGTTTTGTTTTTGAG+TGG + chr1_1:62281391-62281410 Msa0034340:intron 25.0%
! GTTGTTTGACAATAATCAAT+TGG + chr1_1:62281487-62281506 Msa0034340:intron 25.0%
! CAATTCAGTAGTACATATTA+AGG - chr1_1:62281617-62281636 None:intergenic 25.0%
! ATATGTACTACTGAATTGTA+AGG + chr1_1:62281619-62281638 Msa0034340:intron 25.0%
!! GAATAATCTCTCCTTTTATA+AGG + chr1_1:62281952-62281971 Msa0034340:intron 25.0%
! ATAAGCAACATCCTTATAAA+AGG - chr1_1:62281966-62281985 None:intergenic 25.0%
! TTGTGAATATATATTCTGAG+TGG + chr1_1:62282435-62282454 Msa0034340:intron 25.0%
! TATTTAATGTGTTAGGATGA+TGG + chr1_1:62282481-62282500 Msa0034340:intron 25.0%
! TTGGAGTTAAAAGAATTGAA+CGG + chr1_1:62282765-62282784 Msa0034340:CDS 25.0%
!! GAGTTTGATAATTCATAACA+TGG - chr1_1:62283074-62283093 None:intergenic 25.0%
!!! AGAGTTGATAAATTGAATGT+AGG - chr1_1:62283248-62283267 None:intergenic 25.0%
! TACATTCAATTTATCAACTC+TGG + chr1_1:62283247-62283266 Msa0034340:intron 25.0%
! TTAGTCAATAAAAACCATGT+AGG - chr1_1:62283508-62283527 None:intergenic 25.0%
! AATTTGTCTTCCAAATTGAA+AGG - chr1_1:62283694-62283713 None:intergenic 25.0%
! GTAAAGAAAATGGATAATAG+GGG - chr1_1:62284143-62284162 None:intergenic 25.0%
! GGTAAAGAAAATGGATAATA+GGG - chr1_1:62284144-62284163 None:intergenic 25.0%
! TGGTAAAGAAAATGGATAAT+AGG - chr1_1:62284145-62284164 None:intergenic 25.0%
! ATATTCTATATCAATGGAAG+TGG - chr1_1:62284165-62284184 None:intergenic 25.0%
! GACATCACAATATAAATCTT+AGG - chr1_1:62284528-62284547 None:intergenic 25.0%
! AAGATTTATATTGTGATGTC+AGG + chr1_1:62284528-62284547 Msa0034340:intron 25.0%
! AAATATTTACTATCCAAACG+AGG + chr1_1:62284854-62284873 Msa0034340:three_prime_UTR 25.0%
! AGAAAGAAGATACCATATAT+GGG - chr1_1:62284897-62284916 None:intergenic 25.0%
! TAGAAAGAAGATACCATATA+TGG - chr1_1:62284898-62284917 None:intergenic 25.0%
GACAAAAGAAAGAAATGGAA+TGG - chr1_1:62280406-62280425 None:intergenic 30.0%
GAAAGGACAAAAGAAAGAAA+TGG - chr1_1:62280411-62280430 None:intergenic 30.0%
TAAGAAGTAAAGTGAAGGAA+AGG - chr1_1:62280428-62280447 None:intergenic 30.0%
TGATGTAAGAAGTAAAGTGA+AGG - chr1_1:62280433-62280452 None:intergenic 30.0%
AAAATGGAAAAGGAATTAGG+AGG - chr1_1:62280470-62280489 None:intergenic 30.0%
TGGAAAATGGAAAAGGAATT+AGG - chr1_1:62280473-62280492 None:intergenic 30.0%
! AAAACGATAGAAAGGGTTTT+GGG - chr1_1:62280580-62280599 None:intergenic 30.0%
CGAATTGAAAACGATAGAAA+GGG - chr1_1:62280587-62280606 None:intergenic 30.0%
TCGAATTGAAAACGATAGAA+AGG - chr1_1:62280588-62280607 None:intergenic 30.0%
! TGTTTGTGATAATGCTTCAT+AGG + chr1_1:62281102-62281121 Msa0034340:intron 30.0%
AATAACATGATTCCAGTTAC+TGG + chr1_1:62281130-62281149 Msa0034340:intron 30.0%
TATGTTTGAATACCAGTAAC+TGG - chr1_1:62281145-62281164 None:intergenic 30.0%
!! TTTTTGTTTACTTTTACCGC+CGG + chr1_1:62281169-62281188 Msa0034340:intron 30.0%
AATTAAGCTACCAATTGAAC+AGG - chr1_1:62281323-62281342 None:intergenic 30.0%
TTCAGTAGTACATATTAAGG+AGG - chr1_1:62281614-62281633 None:intergenic 30.0%
TATAGTTAACTACCTGGTAT+TGG + chr1_1:62281714-62281733 Msa0034340:intron 30.0%
! TTCCTTTTCTAACTCCAAAA+GGG - chr1_1:62282250-62282269 None:intergenic 30.0%
! TTTCCTTTTCTAACTCCAAA+AGG - chr1_1:62282251-62282270 None:intergenic 30.0%
ATTCACAAATAAACCCACTT+GGG - chr1_1:62282423-62282442 None:intergenic 30.0%
TATTCACAAATAAACCCACT+TGG - chr1_1:62282424-62282443 None:intergenic 30.0%
TGGAGTTAAAAGAATTGAAC+GGG + chr1_1:62282766-62282785 Msa0034340:CDS 30.0%
! TATAGCTAGTTACTTTCTCA+AGG + chr1_1:62282849-62282868 Msa0034340:intron 30.0%
! TATATGGTGCAGATTTTACA+TGG + chr1_1:62283001-62283020 Msa0034340:intron 30.0%
! ATATGGTGCAGATTTTACAT+GGG + chr1_1:62283002-62283021 Msa0034340:intron 30.0%
AAAATATAAAGCAGTTCTCG+TGG - chr1_1:62283208-62283227 None:intergenic 30.0%
AACTCTTAAACTGTATGATC+AGG + chr1_1:62283333-62283352 Msa0034340:intron 30.0%
! ATGAGTTCGTCAATTGTTTT+GGG - chr1_1:62283424-62283443 None:intergenic 30.0%
! AATGAGTTCGTCAATTGTTT+TGG - chr1_1:62283425-62283444 None:intergenic 30.0%
!! ATGGTATTCAGTTTTGTATC+CGG - chr1_1:62283665-62283684 None:intergenic 30.0%
TGAGGTAATGTAAAATAGAG+TGG - chr1_1:62283755-62283774 None:intergenic 30.0%
! TTCAGATTATTAAAGGTGTG+AGG - chr1_1:62283773-62283792 None:intergenic 30.0%
AAGATATCTGGACAAGATAA+TGG + chr1_1:62283825-62283844 Msa0034340:CDS 30.0%
! ATAATGGAGGTATATTGCAA+TGG + chr1_1:62283841-62283860 Msa0034340:intron 30.0%
GAGACAGAATCATAAATTTC+AGG - chr1_1:62283908-62283927 None:intergenic 30.0%
GAAATTTATGATTCTGTCTC+AGG + chr1_1:62283908-62283927 Msa0034340:intron 30.0%
! TTTATCAGATGGTGCTAAAA+GGG + chr1_1:62283946-62283965 Msa0034340:CDS 30.0%
AGGCATATTACACACAAATT+TGG - chr1_1:62283983-62284002 None:intergenic 30.0%
CATTACAGTATGTAGATAAG+AGG - chr1_1:62284054-62284073 None:intergenic 30.0%
AATGGAAGTGGTAAAGAAAA+TGG - chr1_1:62284153-62284172 None:intergenic 30.0%
ATATTGCCATAACTGTCTAT+TGG + chr1_1:62284292-62284311 Msa0034340:intron 30.0%
ATATAGCCAATAGACAGTTA+TGG - chr1_1:62284301-62284320 None:intergenic 30.0%
AAAAAAAAGTCTGACTTTGC+AGG + chr1_1:62284355-62284374 Msa0034340:intron 30.0%
TTTGAACAACTTAGTTCAAG+TGG - chr1_1:62284456-62284475 None:intergenic 30.0%
! AAATAGATAGCTCTACTAGA+GGG - chr1_1:62284481-62284500 None:intergenic 30.0%
! TCTATTTGATTTCTCATTCC+AGG + chr1_1:62284494-62284513 Msa0034340:intron 30.0%
CATAAACTGACATAAGAATG+AGG + chr1_1:62284665-62284684 Msa0034340:exon 30.0%
TGAATCCAACAGTAACAATT+TGG + chr1_1:62284700-62284719 Msa0034340:three_prime_UTR 30.0%
ATTGACCAAATTGTTACTGT+TGG - chr1_1:62284708-62284727 None:intergenic 30.0%
CTTTCAAATAAGCATCAAGA+TGG + chr1_1:62284795-62284814 Msa0034340:three_prime_UTR 30.0%
AAGATACCATATATGGGAAT+TGG - chr1_1:62284891-62284910 None:intergenic 30.0%
! GAAAACGATAGAAAGGGTTT+TGG - chr1_1:62280581-62280600 None:intergenic 35.0%
! CTTAGTGTTGTTGTTGAAGA+TGG + chr1_1:62280630-62280649 Msa0034340:exon 35.0%
GAACAAAAAATAGGCGATTG+AGG - chr1_1:62280742-62280761 None:intergenic 35.0%
!! TTTTGTTTACTTTTACCGCC+GGG + chr1_1:62281170-62281189 Msa0034340:intron 35.0%
AAGACATCAGAAATGAAACC+CGG - chr1_1:62281191-62281210 None:intergenic 35.0%
TTCATTTCTGATGTCTTGTG+TGG + chr1_1:62281194-62281213 Msa0034340:intron 35.0%
CTTTCTTCAACCAGTTTAAC+CGG - chr1_1:62281246-62281265 None:intergenic 35.0%
! CTTTGTCGATGAGATTTTTG+CGG + chr1_1:62281523-62281542 Msa0034340:intron 35.0%
ACATGCGTACAAAGATTGTA+AGG - chr1_1:62281588-62281607 None:intergenic 35.0%
TACAATCTTTGTACGCATGT+TGG + chr1_1:62281588-62281607 Msa0034340:intron 35.0%
CTGTGTTATAGTTAACTACC+TGG + chr1_1:62281708-62281727 Msa0034340:intron 35.0%
!!! TGTTTTTTCAGCACAACTGT+TGG + chr1_1:62281794-62281813 Msa0034340:intron 35.0%
GGTTCAGTGTTAGTTGTAAA+GGG - chr1_1:62281999-62282018 None:intergenic 35.0%
AGGTTCAGTGTTAGTTGTAA+AGG - chr1_1:62282000-62282019 None:intergenic 35.0%
TTTCTCAAACACAATGATGC+TGG + chr1_1:62282053-62282072 Msa0034340:CDS 35.0%
! TTTTCTACTGCAGTTGTTGT+TGG + chr1_1:62282153-62282172 Msa0034340:intron 35.0%
! TCCTTTTCTAACTCCAAAAG+GGG - chr1_1:62282249-62282268 None:intergenic 35.0%
GGAACATTGGATTATCTACA+AGG + chr1_1:62282604-62282623 Msa0034340:CDS 35.0%
GGATTATCTACAAGGTCTAA+AGG + chr1_1:62282612-62282631 Msa0034340:CDS 35.0%
TTATCTACAAGGTCTAAAGG+TGG + chr1_1:62282615-62282634 Msa0034340:intron 35.0%
TATCTACAAGGTCTAAAGGT+GGG + chr1_1:62282616-62282635 Msa0034340:intron 35.0%
! TTAATATTTTGCAGGGTGAG+AGG - chr1_1:62282678-62282697 None:intergenic 35.0%
ATTGGCATTTAGCAATATCG+CGG + chr1_1:62282900-62282919 Msa0034340:intron 35.0%
AACATGGAGTTCATTTCACT+TGG - chr1_1:62283058-62283077 None:intergenic 35.0%
!!! GTTTTGGGAGAGACATAAAA+TGG - chr1_1:62283409-62283428 None:intergenic 35.0%
ACGAACTCATTGCAAATCTT+GGG + chr1_1:62283434-62283453 Msa0034340:CDS 35.0%
!! ATCGTATGTTTTTGCCTACA+TGG + chr1_1:62283491-62283510 Msa0034340:intron 35.0%
GATGTATCGAATAGCATGAT+TGG - chr1_1:62283597-62283616 None:intergenic 35.0%
TCATGCTATTCGATACATCA+TGG + chr1_1:62283598-62283617 Msa0034340:CDS 35.0%
!! CCAAATTGAAAGGCATTCAA+TGG - chr1_1:62283684-62283703 None:intergenic 35.0%
CCATTGAATGCCTTTCAATT+TGG + chr1_1:62283681-62283700 Msa0034340:intron 35.0%
TAGAGTGGAATCATATGCAT+AGG - chr1_1:62283740-62283759 None:intergenic 35.0%
! ATATCTGGACAAGATAATGG+AGG + chr1_1:62283828-62283847 Msa0034340:CDS 35.0%
ATGGATGACAGTTTATCAGA+TGG + chr1_1:62283935-62283954 Msa0034340:CDS 35.0%
! GTTTATCAGATGGTGCTAAA+AGG + chr1_1:62283945-62283964 Msa0034340:CDS 35.0%
AGGATAAGATTGAGAGCTTA+CGG - chr1_1:62284034-62284053 None:intergenic 35.0%
GGGGCAGATATTAACATATA+TGG - chr1_1:62284124-62284143 None:intergenic 35.0%
! ACTGTTACTTGTATTGCATG+TGG + chr1_1:62284399-62284418 Msa0034340:intron 35.0%
!!! TTAGTTCAAGTGGTTTTAGC+AGG - chr1_1:62284446-62284465 None:intergenic 35.0%
! AATAGATAGCTCTACTAGAG+GGG - chr1_1:62284480-62284499 None:intergenic 35.0%
! CAAATAGATAGCTCTACTAG+AGG - chr1_1:62284482-62284501 None:intergenic 35.0%
AAATCTTAGGGACATATACC+TGG - chr1_1:62284515-62284534 None:intergenic 35.0%
TTATATTGTGATGTCAGGTG+TGG + chr1_1:62284533-62284552 Msa0034340:intron 35.0%
TATATTGTGATGTCAGGTGT+GGG + chr1_1:62284534-62284553 Msa0034340:intron 35.0%
GTATGCTCAATACTCAATGA+CGG - chr1_1:62284646-62284665 None:intergenic 35.0%
GTTACTCCAATTCCCATATA+TGG + chr1_1:62284882-62284901 Msa0034340:three_prime_UTR 35.0%
ACAAGGAATGAAGAACAAGT+CGG - chr1_1:62285018-62285037 None:intergenic 35.0%
ACTTGTTCTTCATTCCTTGT+AGG + chr1_1:62285018-62285037 Msa0034340:three_prime_UTR 35.0%
! ATAAGAAGTGCATACCTACA+AGG - chr1_1:62285035-62285054 None:intergenic 35.0%
TGTAGGTATGCACTTCTTAT+TGG + chr1_1:62285035-62285054 Msa0034340:three_prime_UTR 35.0%
TGGAAAAGGAATTAGGAGGA+AGG - chr1_1:62280466-62280485 None:intergenic 40.0%
! AGAAAGATTGCCGGTTAAAC+TGG + chr1_1:62281233-62281252 Msa0034340:intron 40.0%
AACAGGCAGTATCATCAACA+TGG - chr1_1:62281306-62281325 None:intergenic 40.0%
GATGATACTGCCTGTTCAAT+TGG + chr1_1:62281310-62281329 Msa0034340:intron 40.0%
!! TTTTGAGTGGTAGCTACTTG+CGG + chr1_1:62281404-62281423 Msa0034340:intron 40.0%
CGCAAAAATCTCATCGACAA+AGG - chr1_1:62281525-62281544 None:intergenic 40.0%
CATCACTACTTACCAATACC+AGG - chr1_1:62281729-62281748 None:intergenic 40.0%
TGATGCAATCTGTACTGTTG+TGG + chr1_1:62281744-62281763 Msa0034340:intron 40.0%
GTACTGTTGTGGTTTCTTTC+TGG + chr1_1:62281755-62281774 Msa0034340:intron 40.0%
! GTTTCTTTCTGGTCATGCTT+GGG + chr1_1:62281766-62281785 Msa0034340:intron 40.0%
GGATGAAGAAATATTGCCCT+TGG + chr1_1:62281815-62281834 Msa0034340:CDS 40.0%
CCAGAAATTGCAACAACCAA+GGG - chr1_1:62281834-62281853 None:intergenic 40.0%
TCCAGAAATTGCAACAACCA+AGG - chr1_1:62281835-62281854 None:intergenic 40.0%
! TGTTGCAATTTCTGGAAGAG+CGG + chr1_1:62281839-62281858 Msa0034340:CDS 40.0%
TAACGCAGAATCTTGTATCC+AGG - chr1_1:62282081-62282100 None:intergenic 40.0%
ATTCTGCGTTAATGCAATCC+AGG + chr1_1:62282090-62282109 Msa0034340:CDS 40.0%
TAACGAAGTTCCTTGGTATC+TGG + chr1_1:62282115-62282134 Msa0034340:CDS 40.0%
AAACTACACACCAGATACCA+AGG - chr1_1:62282128-62282147 None:intergenic 40.0%
! TGCAGTTGTTGTTGGTTATC+TGG + chr1_1:62282161-62282180 Msa0034340:intron 40.0%
!!! TCCCCTTTTGGAGTTAGAAA+AGG + chr1_1:62282245-62282264 Msa0034340:intron 40.0%
! ATTCTCTCCGGTGTCAATTT+GGG - chr1_1:62282339-62282358 None:intergenic 40.0%
ACAAATAAACCCACTTGGGT+TGG - chr1_1:62282419-62282438 None:intergenic 40.0%
!! ATGTGTTAGGATGATGGAAC+TGG + chr1_1:62282487-62282506 Msa0034340:intron 40.0%
AGACATTTGAAGAGTCAGGT+CGG + chr1_1:62282569-62282588 Msa0034340:CDS 40.0%
AGCAATATCGCGGAGTATAT+AGG + chr1_1:62282910-62282929 Msa0034340:intron 40.0%
ATCGCGGAGTATATAGGTAA+TGG + chr1_1:62282916-62282935 Msa0034340:intron 40.0%
GTAATGGTGCAAGATATACC+AGG + chr1_1:62282932-62282951 Msa0034340:intron 40.0%
TGCAAGATATACCAGGTTAC+TGG + chr1_1:62282939-62282958 Msa0034340:intron 40.0%
! GTGCAGATTTTACATGGGAA+GGG + chr1_1:62283007-62283026 Msa0034340:intron 40.0%
! GTTCTCGTGGACATTTTCTT+TGG - chr1_1:62283195-62283214 None:intergenic 40.0%
ACATAAAATGGCCCTTTGGA+GGG - chr1_1:62283397-62283416 None:intergenic 40.0%
AGAGACATAAAATGGCCCTT+TGG - chr1_1:62283401-62283420 None:intergenic 40.0%
GACGAACTCATTGCAAATCT+TGG + chr1_1:62283433-62283452 Msa0034340:CDS 40.0%
TCATTGCAAATCTTGGGAGA+TGG + chr1_1:62283440-62283459 Msa0034340:CDS 40.0%
CATTGCAAATCTTGGGAGAT+GGG + chr1_1:62283441-62283460 Msa0034340:CDS 40.0%
GTCGCAACGAATTGGAAAAA+AGG + chr1_1:62283630-62283649 Msa0034340:CDS 40.0%
! GGAAAAAAGGTACACATCAC+CGG + chr1_1:62283643-62283662 Msa0034340:intron 40.0%
TGATTCTGTCTCAGGTGAAA+TGG + chr1_1:62283916-62283935 Msa0034340:intron 40.0%
CAGAATTATATTCCTGCTCG+AGG - chr1_1:62284003-62284022 None:intergenic 40.0%
CTGTAATGTCATGCTGTTAC+AGG + chr1_1:62284066-62284085 Msa0034340:intron 40.0%
!!! TGACCTACTGTTGGTTCTTT+TGG + chr1_1:62284818-62284837 Msa0034340:three_prime_UTR 40.0%
ATGCCAAAAGAACCAACAGT+AGG - chr1_1:62284824-62284843 None:intergenic 40.0%
CAAGGAATGAAGAACAAGTC+GGG - chr1_1:62285017-62285036 None:intergenic 40.0%
AGGAATTAGGAGGAAGGTGA+AGG - chr1_1:62280460-62280479 None:intergenic 45.0%
! GTTGTTGTTGAAGATGGCGA+TGG + chr1_1:62280636-62280655 Msa0034340:exon 45.0%
TTAACCGGGTTAATCAGCTG+AGG + chr1_1:62280868-62280887 Msa0034340:CDS 45.0%
TAACCGGGTTAATCAGCTGA+GGG + chr1_1:62280869-62280888 Msa0034340:CDS 45.0%
CTATCGAACATCGAGCACAT+CGG - chr1_1:62281012-62281031 None:intergenic 45.0%
ACATCAGAAATGAAACCCGG+CGG - chr1_1:62281188-62281207 None:intergenic 45.0%
AGCCAGATGCAACCAACATT+TGG - chr1_1:62281430-62281449 None:intergenic 45.0%
! GGTTTCTTTCTGGTCATGCT+TGG + chr1_1:62281765-62281784 Msa0034340:intron 45.0%
CCCTTGGTTGTTGCAATTTC+TGG + chr1_1:62281831-62281850 Msa0034340:CDS 45.0%
! GTTGCAATTTCTGGAAGAGC+GGG + chr1_1:62281840-62281859 Msa0034340:CDS 45.0%
TGCGAGTTCAGTGGTTTAAG+AGG + chr1_1:62281882-62281901 Msa0034340:CDS 45.0%
!! AACACAATGATGCTGGTTCC+TGG + chr1_1:62282060-62282079 Msa0034340:CDS 45.0%
! TGAACTGAACACTCCCCTTT+TGG + chr1_1:62282233-62282252 Msa0034340:intron 45.0%
! GATTCTCTCCGGTGTCAATT+TGG - chr1_1:62282340-62282359 None:intergenic 45.0%
GTCTCAAGTTCGATTCTCTC+CGG - chr1_1:62282351-62282370 None:intergenic 45.0%
TCAAATGTCTCACGTGCAAC+AGG - chr1_1:62282559-62282578 None:intergenic 45.0%
CGTGAGACATTTGAAGAGTC+AGG + chr1_1:62282565-62282584 Msa0034340:CDS 45.0%
!! AAGGTGGGAGTGTTGATACT+TGG + chr1_1:62282631-62282650 Msa0034340:intron 45.0%
ATTGAACGGGTACTTCCAGT+TGG + chr1_1:62282779-62282798 Msa0034340:CDS 45.0%
ACAGTCAAGGAAGTTCCAAC+TGG - chr1_1:62282797-62282816 None:intergenic 45.0%
GGAACTTCCTTGACTGTTGT+TGG + chr1_1:62282800-62282819 Msa0034340:CDS 45.0%
TTCCTTGACTGTTGTTGGTG+AGG + chr1_1:62282805-62282824 Msa0034340:CDS 45.0%
TACCTCACCAACAACAGTCA+AGG - chr1_1:62282810-62282829 None:intergenic 45.0%
AGATATACCAGGTTACTGGC+TGG + chr1_1:62282943-62282962 Msa0034340:intron 45.0%
TATTGTTCCAGCCAGTAACC+TGG - chr1_1:62282953-62282972 None:intergenic 45.0%
! GGTGCAGATTTTACATGGGA+AGG + chr1_1:62283006-62283025 Msa0034340:intron 45.0%
GACATAAAATGGCCCTTTGG+AGG - chr1_1:62283398-62283417 None:intergenic 45.0%
TCAAGATGGTGACCTACTGT+TGG + chr1_1:62284809-62284828 Msa0034340:three_prime_UTR 45.0%
GACACAAGATGTAACTTCCG+TGG + chr1_1:62284937-62284956 Msa0034340:three_prime_UTR 45.0%
GAATGAAGAACAAGTCGGGT+CGG - chr1_1:62285013-62285032 None:intergenic 45.0%
!! TAATAATTTGAAAAAAAAAA+TGG - chr1_1:62281059-62281078 None:intergenic 5.0%
TCTGTTTGCCTGCGTGTTAG+GGG - chr1_1:62280369-62280388 None:intergenic 50.0%
CTCTGTTTGCCTGCGTGTTA+GGG - chr1_1:62280370-62280389 None:intergenic 50.0%
ACTCTGTTTGCCTGCGTGTT+AGG - chr1_1:62280371-62280390 None:intergenic 50.0%
TGAAGATGGCGATGGTTCCA+TGG + chr1_1:62280644-62280663 Msa0034340:exon 50.0%
AGGTGAAAACTACCTGCCAG+TGG - chr1_1:62280722-62280741 None:intergenic 50.0%
GTTAATCAGCTGAGGGAGCT+AGG + chr1_1:62280876-62280895 Msa0034340:CDS 50.0%
CGATGTGCTCGATGTTCGAT+AGG + chr1_1:62281010-62281029 Msa0034340:intron 50.0%
AGCTACTTGCGGCCAAATGT+TGG + chr1_1:62281415-62281434 Msa0034340:intron 50.0%
! GGCCAAATGTTGGTTGCATC+TGG + chr1_1:62281425-62281444 Msa0034340:intron 50.0%
CCACTGAACTCGCAGCTAAT+TGG - chr1_1:62281876-62281895 None:intergenic 50.0%
CCAATTAGCTGCGAGTTCAG+TGG + chr1_1:62281873-62281892 Msa0034340:CDS 50.0%
CCAAGGAACTTCGTTACTCC+TGG - chr1_1:62282111-62282130 None:intergenic 50.0%
CCAGGAGTAACGAAGTTCCT+TGG + chr1_1:62282108-62282127 Msa0034340:CDS 50.0%
TAGCCCACCCAAATTGACAC+CGG + chr1_1:62282329-62282348 Msa0034340:intron 50.0%
! TCTCCGGTGTCAATTTGGGT+GGG - chr1_1:62282335-62282354 None:intergenic 50.0%
GAATCGAACTTGAGACCTCG+AGG + chr1_1:62282355-62282374 Msa0034340:intron 50.0%
GTCACTTGTACGCGGAACAT+TGG + chr1_1:62282591-62282610 Msa0034340:CDS 50.0%
! ATTTTGCAGGGTGAGAGGCA+GGG - chr1_1:62282673-62282692 None:intergenic 50.0%
! TATTTTGCAGGGTGAGAGGC+AGG - chr1_1:62282674-62282693 None:intergenic 50.0%
CAGGCTGCTAAAGACGATGT+CGG + chr1_1:62283352-62283371 Msa0034340:intron 50.0%
GAATTCAGCGACCCTCCAAA+GGG + chr1_1:62283383-62283402 Msa0034340:CDS 50.0%
GTGGTATAAGTGCACCTCTG+CGG + chr1_1:62283541-62283560 Msa0034340:CDS 50.0%
TGGTATAAGTGCACCTCTGC+GGG + chr1_1:62283542-62283561 Msa0034340:CDS 50.0%
TCTGCGGGTTTGACAGTGTT+GGG + chr1_1:62283557-62283576 Msa0034340:CDS 50.0%
AAGACGACGTCGCAACGAAT+TGG + chr1_1:62283622-62283641 Msa0034340:CDS 50.0%
GCTGCAGCTGCTAAGATATC+TGG + chr1_1:62283813-62283832 Msa0034340:CDS 50.0%
GTGTGTAATATGCCTCGAGC+AGG + chr1_1:62283988-62284007 Msa0034340:CDS 50.0%
CATGCTGTTACAGGAAGCAG+TGG + chr1_1:62284075-62284094 Msa0034340:intron 50.0%
TGACCAGTTGTCCTCTTTGC+CGG + chr1_1:62284591-62284610 Msa0034340:CDS 50.0%
TCTATCTGTCTCCGGCAAAG+AGG - chr1_1:62284605-62284624 None:intergenic 50.0%
TTGCCGGAGACAGATAGAGA+AGG + chr1_1:62284607-62284626 Msa0034340:CDS 50.0%
GGAGTAACATGCACCTCGTT+TGG - chr1_1:62284870-62284889 None:intergenic 50.0%
CTGTTTGCCTGCGTGTTAGG+GGG - chr1_1:62280368-62280387 None:intergenic 55.0%
ATGGTTCCATGGCGTGGCAT+CGG + chr1_1:62280655-62280674 Msa0034340:CDS 55.0%
GCTGCTGCTCTTTGCCTTCT+CGG + chr1_1:62280691-62280710 Msa0034340:CDS 55.0%
TGCCTTCTCGGTAGAACCAC+TGG + chr1_1:62280703-62280722 Msa0034340:CDS 55.0%
! TGCCAGTGGTTCTACCGAGA+AGG - chr1_1:62280708-62280727 None:intergenic 55.0%
TTCTCGGTAGAACCACTGGC+AGG + chr1_1:62280707-62280726 Msa0034340:CDS 55.0%
GCTCCCTCAGCTGATTAACC+CGG - chr1_1:62280875-62280894 None:intergenic 55.0%
! CTCTCCGGTGTCAATTTGGG+TGG - chr1_1:62282336-62282355 None:intergenic 55.0%
TCGAACTTGAGACCTCGAGG+AGG + chr1_1:62282358-62282377 Msa0034340:intron 55.0%
!! GTGGTATTGGGTTGGGACCT+GGG - chr1_1:62282392-62282411 None:intergenic 55.0%
! TGGCCTGGTGGTATTGGGTT+GGG - chr1_1:62282399-62282418 None:intergenic 55.0%
! TTGGCCTGGTGGTATTGGGT+TGG - chr1_1:62282400-62282419 None:intergenic 55.0%
!! TGGGTTGGCCTGGTGGTATT+GGG - chr1_1:62282404-62282423 None:intergenic 55.0%
!! TTGGGTTGGCCTGGTGGTAT+TGG - chr1_1:62282405-62282424 None:intergenic 55.0%
!! TAAACCCACTTGGGTTGGCC+TGG - chr1_1:62282414-62282433 None:intergenic 55.0%
ACTGGTCGTGTGCGTGTAGT+TGG + chr1_1:62282505-62282524 Msa0034340:CDS 55.0%
TGTGCGTGTAGTTGGAGCTC+AGG + chr1_1:62282513-62282532 Msa0034340:CDS 55.0%
GTGCGTGTAGTTGGAGCTCA+GGG + chr1_1:62282514-62282533 Msa0034340:CDS 55.0%
TCAGGTCGGTCACTTGTACG+CGG + chr1_1:62282583-62282602 Msa0034340:CDS 55.0%
GGTGAGAGGCAGGGATTGAA+TGG - chr1_1:62282664-62282683 None:intergenic 55.0%
GGAGGGTCGCTGAATTCGAA+TGG - chr1_1:62283380-62283399 None:intergenic 55.0%
CGAATTCAGCGACCCTCCAA+AGG + chr1_1:62283382-62283401 Msa0034340:CDS 55.0%
CAAATCTTGGGAGATGGGCG+AGG + chr1_1:62283446-62283465 Msa0034340:CDS 55.0%
CAACACTGTCAAACCCGCAG+AGG - chr1_1:62283558-62283577 None:intergenic 55.0%
CTCTGCGGGTTTGACAGTGT+TGG + chr1_1:62283556-62283575 Msa0034340:CDS 55.0%
TCTCCGGCAAAGAGGACAAC+TGG - chr1_1:62284597-62284616 None:intergenic 55.0%
CCGCCTTCTCTATCTGTCTC+CGG - chr1_1:62284613-62284632 None:intergenic 55.0%
CCGGAGACAGATAGAGAAGG+CGG + chr1_1:62284610-62284629 Msa0034340:CDS 55.0%
ATGGCGATGGTTCCATGGCG+TGG + chr1_1:62280649-62280668 Msa0034340:CDS 60.0%
CAACAACCGATGCCACGCCA+TGG - chr1_1:62280664-62280683 None:intergenic 60.0%
!! GGTGGTATTGGGTTGGGACC+TGG - chr1_1:62282393-62282412 None:intergenic 60.0%
GGTCCCAACCCAATACCACC+AGG + chr1_1:62282393-62282412 Msa0034340:intron 60.0%
TACCACCAGGCCAACCCAAG+TGG + chr1_1:62282406-62282425 Msa0034340:intron 60.0%
ACCACCAGGCCAACCCAAGT+GGG + chr1_1:62282407-62282426 Msa0034340:intron 60.0%
! GTTGGAGCTCAGGGTGCTAC+TGG + chr1_1:62282523-62282542 Msa0034340:CDS 60.0%
GGAGGATCCCCCTAACACGC+AGG + chr1_1:62280358-62280377 Msa0034340:five_prime_UTR 65.0%
! TGGGAGTGTGCTCCTCCTCG+AGG - chr1_1:62282373-62282392 None:intergenic 65.0%
! TCGAGGAGGAGCACACTCCC+AGG + chr1_1:62282372-62282391 Msa0034340:intron 65.0%
!! ACCCACTTGGGTTGGCCTGG+TGG - chr1_1:62282411-62282430 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 62280348 62285107 62280348 ID=Msa0034340;Name=Msa0034340
chr1_1 mRNA 62280348 62285107 62280348 ID=Msa0034340-mRNA-1;Parent=Msa0034340;Name=Msa0034340-mRNA-1;_AED=0.07;_eAED=0.07;_QI=301|0.9|0.90|1|1|1|11|438|343
chr1_1 exon 62280348 62280728 62280348 ID=Msa0034340-mRNA-1:exon:19588;Parent=Msa0034340-mRNA-1
chr1_1 exon 62280845 62280897 62280845 ID=Msa0034340-mRNA-1:exon:19589;Parent=Msa0034340-mRNA-1
chr1_1 exon 62281805 62281923 62281805 ID=Msa0034340-mRNA-1:exon:19590;Parent=Msa0034340-mRNA-1
chr1_1 exon 62282041 62282136 62282041 ID=Msa0034340-mRNA-1:exon:19591;Parent=Msa0034340-mRNA-1
chr1_1 exon 62282496 62282633 62282496 ID=Msa0034340-mRNA-1:exon:19592;Parent=Msa0034340-mRNA-1
chr1_1 exon 62282761 62282826 62282761 ID=Msa0034340-mRNA-1:exon:19593;Parent=Msa0034340-mRNA-1
chr1_1 exon 62283355 62283467 62283355 ID=Msa0034340-mRNA-1:exon:19594;Parent=Msa0034340-mRNA-1
chr1_1 exon 62283541 62283651 62283541 ID=Msa0034340-mRNA-1:exon:19595;Parent=Msa0034340-mRNA-1
chr1_1 exon 62283806 62283849 62283806 ID=Msa0034340-mRNA-1:exon:19596;Parent=Msa0034340-mRNA-1
chr1_1 exon 62283930 62284021 62283930 ID=Msa0034340-mRNA-1:exon:19597;Parent=Msa0034340-mRNA-1
chr1_1 exon 62284550 62285107 62284550 ID=Msa0034340-mRNA-1:exon:19598;Parent=Msa0034340-mRNA-1
chr1_1 five_prime_UTR 62280348 62280648 62280348 ID=Msa0034340-mRNA-1:five_prime_utr;Parent=Msa0034340-mRNA-1
chr1_1 CDS 62280649 62280728 62280649 ID=Msa0034340-mRNA-1:cds;Parent=Msa0034340-mRNA-1
chr1_1 CDS 62280845 62280897 62280845 ID=Msa0034340-mRNA-1:cds;Parent=Msa0034340-mRNA-1
chr1_1 CDS 62281805 62281923 62281805 ID=Msa0034340-mRNA-1:cds;Parent=Msa0034340-mRNA-1
chr1_1 CDS 62282041 62282136 62282041 ID=Msa0034340-mRNA-1:cds;Parent=Msa0034340-mRNA-1
chr1_1 CDS 62282496 62282633 62282496 ID=Msa0034340-mRNA-1:cds;Parent=Msa0034340-mRNA-1
chr1_1 CDS 62282761 62282826 62282761 ID=Msa0034340-mRNA-1:cds;Parent=Msa0034340-mRNA-1
chr1_1 CDS 62283355 62283467 62283355 ID=Msa0034340-mRNA-1:cds;Parent=Msa0034340-mRNA-1
chr1_1 CDS 62283541 62283651 62283541 ID=Msa0034340-mRNA-1:cds;Parent=Msa0034340-mRNA-1
chr1_1 CDS 62283806 62283849 62283806 ID=Msa0034340-mRNA-1:cds;Parent=Msa0034340-mRNA-1
chr1_1 CDS 62283930 62284021 62283930 ID=Msa0034340-mRNA-1:cds;Parent=Msa0034340-mRNA-1
chr1_1 CDS 62284550 62284669 62284550 ID=Msa0034340-mRNA-1:cds;Parent=Msa0034340-mRNA-1
chr1_1 three_prime_UTR 62284670 62285107 62284670 ID=Msa0034340-mRNA-1:three_prime_utr;Parent=Msa0034340-mRNA-1
Gene Sequence

>Msa0034340

ATGGCGATGGTTCCATGGCGTGGCATCGGTTGTTGTTTGAGTGCTGCTGCTCTTTGCCTTCTCGGTAGAACCACTGGCAGGGATGTTGATATTCTTAAATCTGTTAACCGGGTTAATCAGCTGAGGGAGCTAGCACAACTGTTGGATGAAGAAATATTGCCCTTGGTTGTTGCAATTTCTGGAAGAGCGGGTTCTGAAACTCCAATTAGCTGCGAGTTCAGTGGTTTAAGAGGTGTTATACTTGAAGAAACAGCAGAGCAACATTTTCTCAAACACAATGATGCTGGTTCCTGGATACAAGATTCTGCGTTAATGCAATCCAGGAGTAACGAAGTTCCTTGGTATCTGGATGATGGAACTGGTCGTGTGCGTGTAGTTGGAGCTCAGGGTGCTACTGGTTTTGTATTGCCTGTTGCACGTGAGACATTTGAAGAGTCAGGTCGGTCACTTGTACGCGGAACATTGGATTATCTACAAGGTCTAAAGATGCTTGGAGTTAAAAGAATTGAACGGGTACTTCCAGTTGGAACTTCCTTGACTGTTGTTGGTGAGGCTGCTAAAGACGATGTCGGAACCATTCGAATTCAGCGACCCTCCAAAGGGCCATTTTATGTCTCTCCCAAAACAATTGACGAACTCATTGCAAATCTTGGGAGATGGGCGAGGTGGTATAAGTGCACCTCTGCGGGTTTGACAGTGTTGGGTGTTTATATGATAGCCAATCATGCTATTCGATACATCATGGAAAGACGACGTCGCAACGAATTGGAAAAAAGGGTTCTCGCTGCAGCTGCTAAGATATCTGGACAAGATAATGGAGGTGAAATGGATGACAGTTTATCAGATGGTGCTAAAAGGGAACGTGCAATGCCAAATTTGTGTGTAATATGCCTCGAGCAGGAATATAATTCTGTGTGGGCATATGTGCTGCTGTACAGCTTGCTCTTCGCACTTGACCAGTTGTCCTCTTTGCCGGAGACAGATAGAGAAGGCGGTAAAGACTTTCCGTCATTGAGTATTGAGCATACATAA

Protein sequence

>Msa0034340

MAMVPWRGIGCCLSAAALCLLGRTTGRDVDILKSVNRVNQLRELAQLLDEEILPLVVAISGRAGSETPISCEFSGLRGVILEETAEQHFLKHNDAGSWIQDSALMQSRSNEVPWYLDDGTGRVRVVGAQGATGFVLPVARETFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPVGTSLTVVGEAAKDDVGTIRIQRPSKGPFYVSPKTIDELIANLGRWARWYKCTSAGLTVLGVYMIANHAIRYIMERRRRNELEKRVLAAAAKISGQDNGGEMDDSLSDGAKRERAMPNLCVICLEQEYNSVWAYVLLYSLLFALDQLSSLPETDREGGKDFPSLSIEHT*