AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0686610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0686610 MtrunA17_Chr4g0035491 90.617 405 32 2 22 420 21 425 0.0 718
Msa0686610 MtrunA17_Chr4g0035511 94.286 140 8 0 412 551 39 178 3.46e-86 264
Msa0686610 MtrunA17_Chr7g0269501 63.380 142 51 1 405 545 33 174 4.46e-51 173
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0686610 AT2G38780.1 51.049 429 187 10 6 420 27 446 1.36e-132 394
Msa0686610 AT2G38780.4 51.501 433 179 11 6 420 31 450 1.62e-132 394
Msa0686610 AT2G38780.6 49.123 456 178 12 6 420 31 473 1.04e-127 383
Msa0686610 AT2G38780.12 50.144 347 152 8 1 334 22 360 1.16e-100 308
Msa0686610 AT2G38780.5 51.156 346 140 9 6 334 31 364 1.95e-100 308
Msa0686610 AT2G38780.2 51.003 349 142 9 1 332 26 362 3.33e-100 308
Msa0686610 AT2G38780.13 47.706 327 150 8 1 314 22 340 2.41e-85 269
Msa0686610 AT2G38780.3 47.706 327 150 8 1 314 26 344 3.50e-85 268
Msa0686610 AT2G38780.9 47.706 327 150 8 1 314 26 344 3.50e-85 268
Msa0686610 AT2G38780.11 47.706 327 150 8 1 314 26 344 3.50e-85 268
Msa0686610 AT2G38780.8 47.706 327 150 8 1 314 26 344 3.50e-85 268
Msa0686610 AT2G38780.7 47.706 327 150 8 1 314 26 344 3.50e-85 268
Msa0686610 AT2G38780.10 48.137 322 146 8 6 314 31 344 7.71e-85 269
Msa0686610 AT4G02250.1 32.090 134 88 1 416 546 26 159 1.24e-14 72.0
Msa0686610 AT1G55770.1 35.052 97 60 1 453 546 79 175 1.91e-14 72.0

Find 110 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAACATGTTTCGCTCTTTA+TGG 0.089370 4_4:+51160600 None:intergenic
CTTCTTCTTGTTCATGTTCA+TGG 0.117942 4_4:-51160500 Msa0686610:CDS
TGAATTCCTGGGTCCAAATT+TGG 0.160047 4_4:+51155822 None:intergenic
ACAATTCATGTACAGCTTTC+AGG 0.201984 4_4:-51157657 Msa0686610:intron
TTATTAAACGCAAGCTTTAT+AGG 0.218801 4_4:+51160363 None:intergenic
CATTGCTGTTGCCGTTAATA+AGG 0.234346 4_4:-51155592 Msa0686610:CDS
GATGATCGACGATCCAAATT+TGG 0.256060 4_4:-51155835 Msa0686610:CDS
GCTGCTTACAAGAAGAAATA+TGG 0.267605 4_4:-51158872 Msa0686610:CDS
GAAGGATGGTGACTTCTTAA+TGG 0.279378 4_4:-51158519 Msa0686610:CDS
GCCAAACCTTGTTGAATTCC+TGG 0.321141 4_4:+51155810 None:intergenic
CGGTGCTGATGGAGGGAAAA+AGG 0.321282 4_4:-51160283 Msa0686610:CDS
ACACCCCATGTAGAAACTTT+TGG 0.326916 4_4:+51159121 None:intergenic
GATTAAATCAAACTCTGGTT+TGG 0.332351 4_4:-51160319 Msa0686610:CDS
CCTTGACCTGTTCAGTTTGG+AGG 0.348105 4_4:-51158977 Msa0686610:intron
GTCAATGACTTTCTCATAGT+AGG 0.348199 4_4:+51158469 None:intergenic
TTTAGAGAGTGAAGAAGAAA+AGG 0.358296 4_4:-51158927 Msa0686610:CDS
TCATCATCCTTAGTCTGTTC+AGG 0.364395 4_4:+51159160 None:intergenic
TGATTGCAAGGAGACTTTAT+TGG 0.364633 4_4:-51155787 Msa0686610:CDS
TCTGAGAAGGAGTCTGAAAA+AGG 0.367037 4_4:+51159256 None:intergenic
TTGAGCCACTTCATCTTTAA+CGG 0.367047 4_4:+51156763 None:intergenic
ATTAAATCAAACTCTGGTTT+GGG 0.367973 4_4:-51160318 Msa0686610:CDS
CCAAACGTGATGCTCAATTA+TGG 0.371905 4_4:-51155716 Msa0686610:CDS
ATTATGGTTGCAAGCAGCTT+TGG 0.380601 4_4:-51155700 Msa0686610:CDS
CCCAGGAATTCAACAAGGTT+TGG 0.387218 4_4:-51155811 Msa0686610:CDS
TGAGCCACTTCATCTTTAAC+GGG 0.391252 4_4:+51156764 None:intergenic
TTCTTGCCTACTTTAACACT+TGG 0.395553 4_4:+51157686 None:intergenic
AAGGAGGGAGTGAGAGTACT+TGG 0.407449 4_4:-51159402 Msa0686610:CDS
AGAATTGTCTGTTTCAAAGA+TGG 0.414379 4_4:-51159341 Msa0686610:CDS
ATGTGTGTTGGTCCTTTCTT+CGG 0.414944 4_4:-51155955 Msa0686610:CDS
CATTGACAAATTACCCTTCA+AGG 0.416440 4_4:-51158453 Msa0686610:intron
ATCTGTCATAGCCTTATTAA+CGG 0.417652 4_4:+51155581 None:intergenic
ATTTAGAAGTTTACCTTGAA+GGG 0.427228 4_4:+51158440 None:intergenic
ATTGCAATCTTCACAGAAAC+CGG 0.441020 4_4:+51160255 None:intergenic
TTTGAAATATTGTTAGGTCT+AGG 0.441867 4_4:+51159094 None:intergenic
CCATAATTGAGCATCACGTT+TGG 0.443848 4_4:+51155716 None:intergenic
TCCTTAGTCTGTTCAGGCTG+TGG 0.450969 4_4:+51159166 None:intergenic
ATAATATTTATAGGCATTGA+AGG 0.452788 4_4:-51158537 Msa0686610:intron
TGACAATAGTGTTGGTAAGA+AGG 0.457261 4_4:-51159365 Msa0686610:CDS
AATTTAGAAGTTTACCTTGA+AGG 0.460312 4_4:+51158439 None:intergenic
GGCTCACTTTGTCCGAAGAA+AGG 0.464221 4_4:+51155943 None:intergenic
AAGGGGATTGCCACCTGGAC+TGG 0.466766 4_4:-51159281 Msa0686610:CDS
TGACCTGTTCAGTTTGGAGG+TGG 0.468485 4_4:-51158974 Msa0686610:intron
CCTGAGGTGGAGCTTATTGT+CGG 0.470019 4_4:-51159223 Msa0686610:CDS
TCAAGAAAGTGAAATCAATC+AGG 0.474812 4_4:-51156744 Msa0686610:intron
CCAAACCTTGTTGAATTCCT+GGG 0.480592 4_4:+51155811 None:intergenic
TCCACAGCCTGAACAGACTA+AGG 0.482156 4_4:-51159167 Msa0686610:CDS
GACAATAGTGTTGGTAAGAA+GGG 0.482595 4_4:-51159364 Msa0686610:CDS
TCAATGACTTTCTCATAGTA+GGG 0.487497 4_4:+51158470 None:intergenic
GGTGGAAGAACTATACGTCC+TGG 0.503929 4_4:-51158956 Msa0686610:CDS
TAAAGAGCGAAACATGTTCA+TGG 0.506795 4_4:-51160597 Msa0686610:five_prime_UTR
ACCTGGCTATGATATCACTA+AGG 0.507932 4_4:-51155902 Msa0686610:CDS
ACAAGGTTTGGCTGATTGCA+AGG 0.508120 4_4:-51155799 Msa0686610:CDS
TCTGTTAGTGAAACTGATCA+AGG 0.516186 4_4:-51160195 Msa0686610:intron
AGGAGGGAGTGAGAGTACTT+GGG 0.519057 4_4:-51159401 Msa0686610:CDS
TCTTGCCTACTTTAACACTT+GGG 0.521824 4_4:+51157687 None:intergenic
GAATCGATTAAATCAAACTC+TGG 0.521956 4_4:-51160324 Msa0686610:CDS
ATTGAGCAAAACGGTGCTGA+TGG 0.524701 4_4:-51160294 Msa0686610:CDS
TATTTATAGGCATTGAAGGA+TGG 0.534214 4_4:-51158533 Msa0686610:intron
AAAGTATAAGCAGAATAAAG+AGG 0.535033 4_4:-51160220 Msa0686610:CDS
ACAAGCCAAAAGTTTCTACA+TGG 0.538624 4_4:-51159126 Msa0686610:CDS
TCTCACCCAAGTGTTAAAGT+AGG 0.553096 4_4:-51157692 Msa0686610:CDS
GTGGAAGAACTATACGTCCT+GGG 0.553555 4_4:-51158955 Msa0686610:CDS
TGGCCGCTTCAAACGCGACC+GGG 0.557203 4_4:-51155878 Msa0686610:CDS
GTGGCCGCTTCAAACGCGAC+CGG 0.557441 4_4:-51155879 Msa0686610:CDS
CTACCCCGTTAAAGATGAAG+TGG 0.559497 4_4:-51156768 Msa0686610:CDS
ACATGTGATGCTTCAATACC+TGG 0.560104 4_4:-51155666 Msa0686610:CDS
CCCTTAGTGATATCATAGCC+AGG 0.560549 4_4:+51155901 None:intergenic
TAAATGCATCAAAATAACTC+TGG 0.561561 4_4:+51156807 None:intergenic
GCAGGCTATGGAAATGATGA+AGG 0.561630 4_4:-51156870 Msa0686610:intron
TGTGAAGATTGCAATGGAGA+AGG 0.563126 4_4:-51160247 Msa0686610:CDS
CTGCCACAGTATCCTCAAGC+TGG 0.563269 4_4:+51155754 None:intergenic
AAGACAAGGGGATTGCCACC+TGG 0.573117 4_4:-51159286 Msa0686610:CDS
AGGCAAGTCATCGTCTGAGA+AGG 0.577048 4_4:+51159243 None:intergenic
CCGACAATAAGCTCCACCTC+AGG 0.579887 4_4:+51159223 None:intergenic
AGACGATGACTTGCCTGAGG+TGG 0.579966 4_4:-51159236 Msa0686610:CDS
AATGGACGCGGGAAAACTGA+AGG 0.586192 4_4:-51158501 Msa0686610:CDS
AGCAAAACGGTGCTGATGGA+GGG 0.586859 4_4:-51160290 Msa0686610:CDS
GGAGGGAGTGAGAGTACTTG+GGG 0.587353 4_4:-51159400 Msa0686610:CDS
GAGCAAAACGGTGCTGATGG+AGG 0.587753 4_4:-51160291 Msa0686610:CDS
TGGTGACTTCTTAATGGACG+CGG 0.588889 4_4:-51158513 Msa0686610:CDS
TCACTCTCTAAAATCTCCCC+AGG 0.590984 4_4:+51158938 None:intergenic
GACGATCCAAATTTGGACCC+AGG 0.607875 4_4:-51155828 Msa0686610:CDS
AATGTGAATGACAATAGTGT+TGG 0.608670 4_4:-51159373 Msa0686610:CDS
CTTTGCAAACATACCTACTG+AGG 0.611061 4_4:+51158101 None:intergenic
TTTGTCAAGACTCCCTCAGT+AGG 0.612816 4_4:-51158114 Msa0686610:intron
TTTCACATCGGATAGTATCC+CGG 0.613806 4_4:+51155860 None:intergenic
CAAGCCAAAAGTTTCTACAT+GGG 0.621826 4_4:-51159125 Msa0686610:CDS
TATCCCGGTCGCGTTTGAAG+CGG 0.622386 4_4:+51155875 None:intergenic
CCTGGCTATGATATCACTAA+GGG 0.625300 4_4:-51155901 Msa0686610:CDS
GGATGCAGAAAGCCAGCTTG+AGG 0.627877 4_4:-51155766 Msa0686610:CDS
CTCAGACGATGACTTGCCTG+AGG 0.631457 4_4:-51159239 Msa0686610:CDS
GGTTTGGGAATTGAGCAAAA+CGG 0.633600 4_4:-51160303 Msa0686610:CDS
GCCCTGCAGAGTGAGCTACA+TGG 0.636806 4_4:-51158160 Msa0686610:intron
GAGAGAACATCATCATCACC+AGG 0.641144 4_4:+51155648 None:intergenic
GGTGACTTCTTAATGGACGC+GGG 0.642391 4_4:-51158512 Msa0686610:CDS
ATGGATTAGCTGCTTTACAG+TGG 0.643271 4_4:-51158141 Msa0686610:CDS
GGCTATGATATCACTAAGGG+TGG 0.644684 4_4:-51155898 Msa0686610:CDS
TTGGACCCAGGAATTCAACA+AGG 0.653837 4_4:-51155816 Msa0686610:CDS
CGTTGCGCATGAAACCAACA+AGG 0.659063 4_4:-51160470 Msa0686610:CDS
GGTTTCTGTGAAGATTGCAA+TGG 0.663563 4_4:-51160253 Msa0686610:CDS
TGGAAGAACTATACGTCCTG+GGG 0.672309 4_4:-51158954 Msa0686610:CDS
AAGCCAAAAGTTTCTACATG+GGG 0.672588 4_4:-51159124 Msa0686610:CDS
ACAAGCGACTCTAAAAGACC+TGG 0.672920 4_4:-51155919 Msa0686610:CDS
TTTGCAAACATACCTACTGA+GGG 0.676039 4_4:+51158102 None:intergenic
TAACAAGGAACAATGTGTGT+TGG 0.683179 4_4:-51155967 Msa0686610:intron
AAGCCAGCTTGAGGATACTG+TGG 0.683517 4_4:-51155757 Msa0686610:CDS
GAGCCACTTCATCTTTAACG+GGG 0.710162 4_4:+51156765 None:intergenic
AGAGCGAAACATGTTCATGG+TGG 0.717217 4_4:-51160594 Msa0686610:five_prime_UTR
TATGAACCAAGAAAACAACA+AGG 0.765280 4_4:-51160421 Msa0686610:CDS
TCATGGTGGTAAGTTCTGAG+TGG 0.772718 4_4:-51160580 Msa0686610:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTATTTTTAATTAA+TGG - chr4_4:51155616-51155635 Msa0686610:CDS 0.0%
!! GAATTCTATATAATATTTAT+AGG - chr4_4:51157617-51157636 Msa0686610:intron 10.0%
!! ATAAATATAAATAATAGGAT+AGG + chr4_4:51158244-51158263 None:intergenic 10.0%
!! GAAAAATATTTATTTACAAA+TGG - chr4_4:51158891-51158910 Msa0686610:CDS 10.0%
!!! AAAATTAGAGTATTAATTTA+GGG + chr4_4:51159887-51159906 None:intergenic 10.0%
!!! TAAAATTAGAGTATTAATTT+AGG + chr4_4:51159888-51159907 None:intergenic 10.0%
!!! AATAAGATCATACTTATTTT+GGG + chr4_4:51156470-51156489 None:intergenic 15.0%
!!! TAATAAGATCATACTTATTT+TGG + chr4_4:51156471-51156490 None:intergenic 15.0%
!!! TATAAACATTGATAATGAAA+AGG - chr4_4:51156676-51156695 Msa0686610:intron 15.0%
!!! CTAAAAAATGCTTTAAAAAA+GGG + chr4_4:51157859-51157878 None:intergenic 15.0%
!! TCATTACAAAATAAATGTAA+CGG - chr4_4:51158837-51158856 Msa0686610:CDS 15.0%
!! TATTATTTGCAAAGTAAAAT+TGG + chr4_4:51159045-51159064 None:intergenic 15.0%
!!! TTTTACTTTGCAAATAATAA+TGG - chr4_4:51159046-51159065 Msa0686610:intron 15.0%
!!! AAACTATGAAATTTTTAGAA+AGG - chr4_4:51159071-51159090 Msa0686610:intron 15.0%
!! CATTAACAATTAAAAAGAAA+TGG + chr4_4:51159555-51159574 None:intergenic 15.0%
!! GATATTTATATGTATATAGT+AGG - chr4_4:51159658-51159677 Msa0686610:intron 15.0%
!!! TTTATTCTGCTTATACTTTT+TGG + chr4_4:51155942-51155961 None:intergenic 20.0%
!! AAGTGATTAATTAATGTGTT+AGG - chr4_4:51156145-51156164 Msa0686610:intron 20.0%
!! ATATAGTGATATAGAGTTAT+TGG - chr4_4:51156326-51156345 Msa0686610:intron 20.0%
!!! AATTTATTTTTAGGATTGCA+AGG - chr4_4:51156742-51156761 Msa0686610:intron 20.0%
!!! ACTGTTTTTGAAATATTGTT+AGG + chr4_4:51157078-51157097 None:intergenic 20.0%
!! TTCATGAAATAAATCATGTT+GGG + chr4_4:51157600-51157619 None:intergenic 20.0%
!! ATTCATGAAATAAATCATGT+TGG + chr4_4:51157601-51157620 None:intergenic 20.0%
!!! ATAATATTTATAGGCATTGA+AGG - chr4_4:51157626-51157645 Msa0686610:intron 20.0%
!!! GCTAAAAAATGCTTTAAAAA+AGG + chr4_4:51157860-51157879 None:intergenic 20.0%
!! AAACTAGGAAAACATATATA+TGG - chr4_4:51157939-51157958 Msa0686610:intron 20.0%
!! TAGGTATAGATAATATAGTT+AGG + chr4_4:51158225-51158244 None:intergenic 20.0%
!! TCATCAAATCAAAATATGTT+TGG + chr4_4:51158407-51158426 None:intergenic 20.0%
!!! TCATCAAACTTTTTTATTTG+TGG - chr4_4:51158690-51158709 Msa0686610:intron 20.0%
!!! TACTTTTAACACTCTTTAAA+AGG + chr4_4:51158921-51158940 None:intergenic 20.0%
!!! TATGAAAGTATTGAATTCAA+AGG + chr4_4:51158982-51159001 None:intergenic 20.0%
!! ACAACTTAATAGATATGTAT+AGG - chr4_4:51159617-51159636 Msa0686610:intron 20.0%
!! TTATATGTATATAGTAGGAT+AGG - chr4_4:51159663-51159682 Msa0686610:intron 20.0%
!!! ATTCTAAAAAATACTTCATG+TGG - chr4_4:51159805-51159824 Msa0686610:intron 20.0%
!! TTTGTTTATAAACTATTGTG+AGG + chr4_4:51160008-51160027 None:intergenic 20.0%
!! TTATTAAACGCAAGCTTTAT+AGG + chr4_4:51155803-51155822 None:intergenic 25.0%
!! ATTAAATCAAACTCTGGTTT+GGG - chr4_4:51155845-51155864 Msa0686610:CDS 25.0%
! AAAGTATAAGCAGAATAAAG+AGG - chr4_4:51155943-51155962 Msa0686610:CDS 25.0%
! GCTTATAGAAAATATGCTTA+TGG - chr4_4:51156229-51156248 Msa0686610:intron 25.0%
!! TTTGAAATATTGTTAGGTCT+AGG + chr4_4:51157072-51157091 None:intergenic 25.0%
! GGTAAACATATCATATCTAT+TGG - chr4_4:51157353-51157372 Msa0686610:intron 25.0%
!! AAGGATGGTAAGAATATTTT+GGG + chr4_4:51157382-51157401 None:intergenic 25.0%
!! AAAGGATGGTAAGAATATTT+TGG + chr4_4:51157383-51157402 None:intergenic 25.0%
!!! TTCTTAACTTGTTGAAATGA+AGG - chr4_4:51157519-51157538 Msa0686610:intron 25.0%
! ATTTAGAAGTTTACCTTGAA+GGG + chr4_4:51157726-51157745 None:intergenic 25.0%
! AATTTAGAAGTTTACCTTGA+AGG + chr4_4:51157727-51157746 None:intergenic 25.0%
! ATTATGTACAAGATGTTTAG+AGG - chr4_4:51157744-51157763 Msa0686610:intron 25.0%
!! GGTGTTTTGCTTATTATTTA+TGG - chr4_4:51158351-51158370 Msa0686610:intron 25.0%
!!! ATTTTGATTTGATGATTGAC+AGG - chr4_4:51158412-51158431 Msa0686610:intron 25.0%
! AATATTCCACAGTAACATTA+TGG - chr4_4:51158613-51158632 Msa0686610:intron 25.0%
!! TTAATTTTACAGTGTAATGC+AGG + chr4_4:51158761-51158780 None:intergenic 25.0%
! ACAAGCTTTCATGTAAAAAA+TGG + chr4_4:51159005-51159024 None:intergenic 25.0%
! TGCAAAGTAAAATTGGATAA+TGG + chr4_4:51159038-51159057 None:intergenic 25.0%
! AGCAAAGAAAATCATTACTA+CGG + chr4_4:51159192-51159211 None:intergenic 25.0%
! TAAATGCATCAAAATAACTC+TGG + chr4_4:51159359-51159378 None:intergenic 25.0%
! AGAAGTAGTACAACAAAAAT+AGG + chr4_4:51159474-51159493 None:intergenic 25.0%
!! ATCTATTAAGTTGTTCAAAC+TGG + chr4_4:51159611-51159630 None:intergenic 25.0%
! TATGACATAAGATTGGAATT+TGG - chr4_4:51159687-51159706 Msa0686610:intron 25.0%
!!! ACTCATTACTTTTCTATTTC+TGG + chr4_4:51159843-51159862 None:intergenic 25.0%
! AGGGTTAAATTGTTTGTAAT+TGG + chr4_4:51159965-51159984 None:intergenic 25.0%
AACCAACAAGGTTAAAAACT+AGG - chr4_4:51155705-51155724 Msa0686610:CDS 30.0%
!! TTCCTAGTTTTTAACCTTGT+TGG + chr4_4:51155710-51155729 None:intergenic 30.0%
TATGAACCAAGAAAACAACA+AGG - chr4_4:51155742-51155761 Msa0686610:CDS 30.0%
!!! AAGATTCCTTGTTGTTTTCT+TGG + chr4_4:51155751-51155770 None:intergenic 30.0%
GAATCGATTAAATCAAACTC+TGG - chr4_4:51155839-51155858 Msa0686610:CDS 30.0%
GATTAAATCAAACTCTGGTT+TGG - chr4_4:51155844-51155863 Msa0686610:CDS 30.0%
! TAGCATAAGCAAAGTACTTA+TGG + chr4_4:51156124-51156143 None:intergenic 30.0%
!! AATGAAAAGGTGTGTACTTT+TGG - chr4_4:51156689-51156708 Msa0686610:intron 30.0%
!! GGGTGTCTGAATTTATTTTT+AGG - chr4_4:51156733-51156752 Msa0686610:intron 30.0%
!!! TTATTTTTAGGATTGCAAGG+AGG - chr4_4:51156745-51156764 Msa0686610:CDS 30.0%
!!! TATTTTTAGGATTGCAAGGA+GGG - chr4_4:51156746-51156765 Msa0686610:CDS 30.0%
AATGTGAATGACAATAGTGT+TGG - chr4_4:51156790-51156809 Msa0686610:CDS 30.0%
AGAATTGTCTGTTTCAAAGA+TGG - chr4_4:51156822-51156841 Msa0686610:CDS 30.0%
!! TGTTTCAAAGATGGATTTTG+TGG - chr4_4:51156831-51156850 Msa0686610:CDS 30.0%
!! GTTTCAAAGATGGATTTTGT+GGG - chr4_4:51156832-51156851 Msa0686610:CDS 30.0%
!! TTTCAAAGATGGATTTTGTG+GGG - chr4_4:51156833-51156852 Msa0686610:CDS 30.0%
AAGGAAAGGGTAAATTTGAA+AGG + chr4_4:51157166-51157185 None:intergenic 30.0%
TTTAGAGAGTGAAGAAGAAA+AGG - chr4_4:51157236-51157255 Msa0686610:intron 30.0%
GAAAAAACACGCTAAAAAGA+AGG + chr4_4:51157406-51157425 None:intergenic 30.0%
ATGTAGTGTATCATTAGCAA+TGG - chr4_4:51157486-51157505 Msa0686610:intron 30.0%
!! TATTTATAGGCATTGAAGGA+TGG - chr4_4:51157630-51157649 Msa0686610:intron 30.0%
TCAATGACTTTCTCATAGTA+GGG + chr4_4:51157696-51157715 None:intergenic 30.0%
CCAACTAATACAAACCAAAA+GGG - chr4_4:51157822-51157841 Msa0686610:intron 30.0%
CTAGGAAAACATATATATGG+AGG - chr4_4:51157942-51157961 Msa0686610:intron 30.0%
CATATATATGGAGGATTTAG+AGG - chr4_4:51157951-51157970 Msa0686610:intron 30.0%
CATTGAACTCAATAAAGACA+GGG + chr4_4:51158561-51158580 None:intergenic 30.0%
TCATTGAACTCAATAAAGAC+AGG + chr4_4:51158562-51158581 None:intergenic 30.0%
TGATGAGTATATGCACTAAT+AGG + chr4_4:51158676-51158695 None:intergenic 30.0%
ACAAAGCTAGATCGAAATAT+AGG + chr4_4:51159126-51159145 None:intergenic 30.0%
TGAAACAAAGTTTAAGCACA+AGG + chr4_4:51159167-51159186 None:intergenic 30.0%
TCAAGAAAGTGAAATCAATC+AGG - chr4_4:51159419-51159438 Msa0686610:intron 30.0%
ATTGTTAATGATCAAGTCCT+TGG - chr4_4:51159565-51159584 Msa0686610:intron 30.0%
GATAGGATATGACATAAGAT+TGG - chr4_4:51159680-51159699 Msa0686610:intron 30.0%
ACATAAGATTGGAATTTGGA+TGG - chr4_4:51159691-51159710 Msa0686610:intron 30.0%
!! TTCTATTTCTGGCTAAACTA+GGG + chr4_4:51159832-51159851 None:intergenic 30.0%
!! TTTCTATTTCTGGCTAAACT+AGG + chr4_4:51159833-51159852 None:intergenic 30.0%
GTAACCATCCAATAAAATTG+AGG - chr4_4:51159925-51159944 Msa0686610:intron 30.0%
! TTGACCTCAATTTTATTGGA+TGG + chr4_4:51159932-51159951 None:intergenic 30.0%
CACAAAATACTTATCTCTCT+TGG - chr4_4:51160091-51160110 Msa0686610:intron 30.0%
! CTTGGTGGTTTAATAAAATG+AGG + chr4_4:51160124-51160143 None:intergenic 30.0%
! GCACATACTTTGTTGATTAA+GGG + chr4_4:51160167-51160186 None:intergenic 30.0%
! TGCACATACTTTGTTGATTA+AGG + chr4_4:51160168-51160187 None:intergenic 30.0%
!! ATCTGTCATAGCCTTATTAA+CGG + chr4_4:51160585-51160604 None:intergenic 30.0%
TAAAGAGCGAAACATGTTCA+TGG - chr4_4:51155566-51155585 Msa0686610:CDS 35.0%
CTTCTTCTTGTTCATGTTCA+TGG - chr4_4:51155663-51155682 Msa0686610:CDS 35.0%
ATTGCAATCTTCACAGAAAC+CGG + chr4_4:51155911-51155930 None:intergenic 35.0%
TCTGTTAGTGAAACTGATCA+AGG - chr4_4:51155968-51155987 Msa0686610:intron 35.0%
! TTGCTTCACCTATTTTGCAT+CGG - chr4_4:51156190-51156209 Msa0686610:intron 35.0%
TATAAGCACCCAATTATCTC+CGG + chr4_4:51156216-51156235 None:intergenic 35.0%
CCACAAATAGTGAAGAGATA+GGG + chr4_4:51156260-51156279 None:intergenic 35.0%
!!! TTATTTTGGGTGCTTAAGTG+GGG + chr4_4:51156457-51156476 None:intergenic 35.0%
!!! CTTATTTTGGGTGCTTAAGT+GGG + chr4_4:51156458-51156477 None:intergenic 35.0%
!!! ACTTATTTTGGGTGCTTAAG+TGG + chr4_4:51156459-51156478 None:intergenic 35.0%
TGTATCTTTGGCTACAATTG+AGG + chr4_4:51156611-51156630 None:intergenic 35.0%
TGTAGCCAAAGATACAACAA+TGG - chr4_4:51156615-51156634 Msa0686610:intron 35.0%
TTAGGCCATTGTTGTATCTT+TGG + chr4_4:51156623-51156642 None:intergenic 35.0%
!! TGACAATAGTGTTGGTAAGA+AGG - chr4_4:51156798-51156817 Msa0686610:CDS 35.0%
!! GACAATAGTGTTGGTAAGAA+GGG - chr4_4:51156799-51156818 Msa0686610:CDS 35.0%
TTTCGGACAAAAAGAAGACA+AGG - chr4_4:51156863-51156882 Msa0686610:CDS 35.0%
TTCGGACAAAAAGAAGACAA+GGG - chr4_4:51156864-51156883 Msa0686610:CDS 35.0%
ACAAGCCAAAAGTTTCTACA+TGG - chr4_4:51157037-51157056 Msa0686610:intron 35.0%
CAAGCCAAAAGTTTCTACAT+GGG - chr4_4:51157038-51157057 Msa0686610:intron 35.0%
AAGCCAAAAGTTTCTACATG+GGG - chr4_4:51157039-51157058 Msa0686610:intron 35.0%
!!! GTTTTTTCTGCAAGAAGACT+TGG + chr4_4:51157117-51157136 None:intergenic 35.0%
CACAAACAATTGGACTATCT+AGG + chr4_4:51157139-51157158 None:intergenic 35.0%
!! GAAAGGCATTCACAAACAAT+TGG + chr4_4:51157149-51157168 None:intergenic 35.0%
GCTGCTTACAAGAAGAAATA+TGG - chr4_4:51157291-51157310 Msa0686610:intron 35.0%
!!! TCGCATTCGATTTTTAGCTT+TGG + chr4_4:51157330-51157349 None:intergenic 35.0%
AAAGCTAAAAATCGAATGCG+AGG - chr4_4:51157329-51157348 Msa0686610:intron 35.0%
AACACGCTAAAAAGAAGGAA+AGG + chr4_4:51157401-51157420 None:intergenic 35.0%
!! TTGAAATGAAGGCATTCACT+TGG - chr4_4:51157530-51157549 Msa0686610:intron 35.0%
GTCAATGACTTTCTCATAGT+AGG + chr4_4:51157697-51157716 None:intergenic 35.0%
CATTGACAAATTACCCTTCA+AGG - chr4_4:51157710-51157729 Msa0686610:CDS 35.0%
ATGTACAAGATGTTTAGAGG+TGG - chr4_4:51157747-51157766 Msa0686610:intron 35.0%
TGTACAAGATGTTTAGAGGT+GGG - chr4_4:51157748-51157767 Msa0686610:intron 35.0%
GCCAACTAATACAAACCAAA+AGG - chr4_4:51157821-51157840 Msa0686610:intron 35.0%
!!! CCCTTTTGGTTTGTATTAGT+TGG + chr4_4:51157825-51157844 None:intergenic 35.0%
TCATGACATATACTCTAGCA+GGG - chr4_4:51157916-51157935 Msa0686610:intron 35.0%
TTTGCAAACATACCTACTGA+GGG + chr4_4:51158064-51158083 None:intergenic 35.0%
AGTCTATGTAGAACATAGCA+TGG + chr4_4:51158121-51158140 None:intergenic 35.0%
AACCTTGCATATGCATATTG+GGG + chr4_4:51158152-51158171 None:intergenic 35.0%
CAACCTTGCATATGCATATT+GGG + chr4_4:51158153-51158172 None:intergenic 35.0%
ACAACCTTGCATATGCATAT+TGG + chr4_4:51158154-51158173 None:intergenic 35.0%
!! CAAGGTTGTTATTTCAGACT+GGG - chr4_4:51158165-51158184 Msa0686610:intron 35.0%
!! AAGGTTGTTATTTCAGACTG+GGG - chr4_4:51158166-51158185 Msa0686610:intron 35.0%
AGTTAGGTTTCAGCAAAGAA+AGG + chr4_4:51158209-51158228 None:intergenic 35.0%
TTAGTGAACGAAGTCATAGA+TGG + chr4_4:51158301-51158320 None:intergenic 35.0%
TCTTGCCTACTTTAACACTT+GGG + chr4_4:51158479-51158498 None:intergenic 35.0%
TTCTTGCCTACTTTAACACT+TGG + chr4_4:51158480-51158499 None:intergenic 35.0%
ACAATTCATGTACAGCTTTC+AGG - chr4_4:51158506-51158525 Msa0686610:CDS 35.0%
AACTCAATAAAGACAGGGTA+AGG + chr4_4:51158556-51158575 None:intergenic 35.0%
ATCTCACCATAATGTTACTG+TGG + chr4_4:51158622-51158641 None:intergenic 35.0%
ACATTATGGTGAGATGTGAT+TGG - chr4_4:51158627-51158646 Msa0686610:intron 35.0%
GCTTATATATGAACTCTTGC+AGG - chr4_4:51159275-51159294 Msa0686610:CDS 35.0%
TTGAGCCACTTCATCTTTAA+CGG + chr4_4:51159403-51159422 None:intergenic 35.0%
TATTCAATCTCTGTGTTCCA+AGG + chr4_4:51159585-51159604 None:intergenic 35.0%
!! TTTTAGAAGCAACAAGCAAG+TGG - chr4_4:51159903-51159922 Msa0686610:intron 35.0%
AAGTGAGGAAACTTAGTAGA+GGG + chr4_4:51159984-51160003 None:intergenic 35.0%
AAAGTGAGGAAACTTAGTAG+AGG + chr4_4:51159985-51160004 None:intergenic 35.0%
AAACTATTGTGAGGAAAGTG+AGG + chr4_4:51159999-51160018 None:intergenic 35.0%
AACACACATTGTTCCTTGTT+AGG + chr4_4:51160197-51160216 None:intergenic 35.0%
TAACAAGGAACAATGTGTGT+TGG - chr4_4:51160196-51160215 Msa0686610:CDS 35.0%
TGATTGCAAGGAGACTTTAT+TGG - chr4_4:51160376-51160395 Msa0686610:CDS 35.0%
GGTTTGGGAATTGAGCAAAA+CGG - chr4_4:51155860-51155879 Msa0686610:CDS 40.0%
GGTTTCTGTGAAGATTGCAA+TGG - chr4_4:51155910-51155929 Msa0686610:CDS 40.0%
TGTGAAGATTGCAATGGAGA+AGG - chr4_4:51155916-51155935 Msa0686610:CDS 40.0%
CCCTATCTCTTCACTATTTG+TGG - chr4_4:51156257-51156276 Msa0686610:intron 40.0%
GCCACAAATAGTGAAGAGAT+AGG + chr4_4:51156261-51156280 None:intergenic 40.0%
! AGTGTTAGTTGATGTCTACG+AGG - chr4_4:51156549-51156568 Msa0686610:intron 40.0%
CACAATCGTGGTAGCAATTT+AGG + chr4_4:51156641-51156660 None:intergenic 40.0%
CTAAATTGCTACCACGATTG+TGG - chr4_4:51156639-51156658 Msa0686610:intron 40.0%
ATAAAGTGCAACCACAATCG+TGG + chr4_4:51156653-51156672 None:intergenic 40.0%
TCGGACAAAAAGAAGACAAG+GGG - chr4_4:51156865-51156884 Msa0686610:CDS 40.0%
TCTGAGAAGGAGTCTGAAAA+AGG + chr4_4:51156910-51156929 None:intergenic 40.0%
TCATCATCCTTAGTCTGTTC+AGG + chr4_4:51157006-51157025 None:intergenic 40.0%
! ACACCCCATGTAGAAACTTT+TGG + chr4_4:51157045-51157064 None:intergenic 40.0%
CGCTAAAAAGAAGGAAAGGA+TGG + chr4_4:51157397-51157416 None:intergenic 40.0%
GAAGGATGGTGACTTCTTAA+TGG - chr4_4:51157644-51157663 Msa0686610:intron 40.0%
GTACAAGATGTTTAGAGGTG+GGG - chr4_4:51157749-51157768 Msa0686610:intron 40.0%
TACAAGATGTTTAGAGGTGG+GGG - chr4_4:51157750-51157769 Msa0686610:intron 40.0%
GCAGTCAGAGAGATGATATT+AGG + chr4_4:51157803-51157822 None:intergenic 40.0%
! GGGCAAACAAAATACCCTTT+TGG + chr4_4:51157839-51157858 None:intergenic 40.0%
GTCATGACATATACTCTAGC+AGG - chr4_4:51157915-51157934 Msa0686610:intron 40.0%
TATACTCTAGCAGGGAAACT+AGG - chr4_4:51157924-51157943 Msa0686610:intron 40.0%
!! ATGGATTAGCTGCTTTACAG+TGG - chr4_4:51158022-51158041 Msa0686610:intron 40.0%
CTTTGCAAACATACCTACTG+AGG + chr4_4:51158065-51158084 None:intergenic 40.0%
!! GCAAGGTTGTTATTTCAGAC+TGG - chr4_4:51158164-51158183 Msa0686610:intron 40.0%
!! TTGTTATTTCAGACTGGGGA+CGG - chr4_4:51158170-51158189 Msa0686610:intron 40.0%
CCTATACTTCCAAGTCAAAG+AGG + chr4_4:51158333-51158352 None:intergenic 40.0%
!! CCTCTTTGACTTGGAAGTAT+AGG - chr4_4:51158330-51158349 Msa0686610:intron 40.0%
TCTCACCCAAGTGTTAAAGT+AGG - chr4_4:51158471-51158490 Msa0686610:CDS 40.0%
ATATGAACTCTTGCAGGCTA+TGG - chr4_4:51159281-51159300 Msa0686610:CDS 40.0%
TGAGCCACTTCATCTTTAAC+GGG + chr4_4:51159402-51159421 None:intergenic 40.0%
!!! TCTCAACCCTTGCCATTTTT+AGG - chr4_4:51159738-51159757 Msa0686610:intron 40.0%
!!! AACCCTTGCCATTTTTAGGA+AGG - chr4_4:51159742-51159761 Msa0686610:intron 40.0%
!!! ACCCTTGCCATTTTTAGGAA+GGG - chr4_4:51159743-51159762 Msa0686610:intron 40.0%
TCCCTTCCTAAAAATGGCAA+GGG + chr4_4:51159747-51159766 None:intergenic 40.0%
! GCGCTTGACCTCAATTTTAT+TGG + chr4_4:51159936-51159955 None:intergenic 40.0%
! TGACTTGTGCAAAGGTAACT+TGG + chr4_4:51160142-51160161 None:intergenic 40.0%
!! TAAGGGATTGACTTGTGCAA+AGG + chr4_4:51160150-51160169 None:intergenic 40.0%
ATGTGCAAACTTGCCTAACA+AGG - chr4_4:51160181-51160200 Msa0686610:intron 40.0%
! ATGTGTGTTGGTCCTTTCTT+CGG - chr4_4:51160208-51160227 Msa0686610:CDS 40.0%
ACCTGGCTATGATATCACTA+AGG - chr4_4:51160261-51160280 Msa0686610:CDS 40.0%
CCTGGCTATGATATCACTAA+GGG - chr4_4:51160262-51160281 Msa0686610:CDS 40.0%
TTTCACATCGGATAGTATCC+CGG + chr4_4:51160306-51160325 None:intergenic 40.0%
! GTCGATCATCGTTTTCACAT+CGG + chr4_4:51160318-51160337 None:intergenic 40.0%
GATGATCGACGATCCAAATT+TGG - chr4_4:51160328-51160347 Msa0686610:CDS 40.0%
TGAATTCCTGGGTCCAAATT+TGG + chr4_4:51160344-51160363 None:intergenic 40.0%
CCAAACCTTGTTGAATTCCT+GGG + chr4_4:51160355-51160374 None:intergenic 40.0%
CCATAATTGAGCATCACGTT+TGG + chr4_4:51160450-51160469 None:intergenic 40.0%
CCAAACGTGATGCTCAATTA+TGG - chr4_4:51160447-51160466 Msa0686610:CDS 40.0%
ATTATGGTTGCAAGCAGCTT+TGG - chr4_4:51160463-51160482 Msa0686610:CDS 40.0%
ACATGTGATGCTTCAATACC+TGG - chr4_4:51160497-51160516 Msa0686610:CDS 40.0%
! CATTGCTGTTGCCGTTAATA+AGG - chr4_4:51160571-51160590 Msa0686610:five_prime_UTR 40.0%
AGAGCGAAACATGTTCATGG+TGG - chr4_4:51155569-51155588 Msa0686610:CDS 45.0%
!! TCATGGTGGTAAGTTCTGAG+TGG - chr4_4:51155583-51155602 Msa0686610:CDS 45.0%
! ATTGAGCAAAACGGTGCTGA+TGG - chr4_4:51155869-51155888 Msa0686610:CDS 45.0%
TGGAGGGAAAAAGGATTTGC+CGG - chr4_4:51155889-51155908 Msa0686610:CDS 45.0%
!! TTCACCTATTTTGCATCGGC+CGG - chr4_4:51156194-51156213 Msa0686610:intron 45.0%
CGCATCAATCGAAGTTATCG+AGG + chr4_4:51156587-51156606 None:intergenic 45.0%
! GGTGTGTACTTTTGGTCATG+CGG - chr4_4:51156697-51156716 Msa0686610:intron 45.0%
TCATGCGGTTCGTGCTAAAA+TGG - chr4_4:51156712-51156731 Msa0686610:intron 45.0%
CATGCGGTTCGTGCTAAAAT+GGG - chr4_4:51156713-51156732 Msa0686610:intron 45.0%
!! AAGATGGATTTTGTGGGGCT+TGG - chr4_4:51156838-51156857 Msa0686610:CDS 45.0%
!! TTTTGTGGGGCTTGGCTTTT+CGG - chr4_4:51156846-51156865 Msa0686610:CDS 45.0%
TCTGAAAAAGGAACCAGTCC+AGG + chr4_4:51156898-51156917 None:intergenic 45.0%
GAACAGGTCAAGGAAGGAAA+GGG + chr4_4:51157179-51157198 None:intergenic 45.0%
TGAACAGGTCAAGGAAGGAA+AGG + chr4_4:51157180-51157199 None:intergenic 45.0%
CAAACTGAACAGGTCAAGGA+AGG + chr4_4:51157185-51157204 None:intergenic 45.0%
CTTCCTTGACCTGTTCAGTT+TGG - chr4_4:51157183-51157202 Msa0686610:intron 45.0%
GTGGAAGAACTATACGTCCT+GGG - chr4_4:51157208-51157227 Msa0686610:intron 45.0%
TGGAAGAACTATACGTCCTG+GGG - chr4_4:51157209-51157228 Msa0686610:intron 45.0%
!! TCACTCTCTAAAATCTCCCC+AGG + chr4_4:51157228-51157247 None:intergenic 45.0%
GCTAAAAATCGAATGCGAGG+AGG - chr4_4:51157332-51157351 Msa0686610:intron 45.0%
! TGGTGACTTCTTAATGGACG+CGG - chr4_4:51157650-51157669 Msa0686610:intron 45.0%
TTTGTCAAGACTCCCTCAGT+AGG - chr4_4:51158049-51158068 Msa0686610:intron 45.0%
CTCCCCAATATGCATATGCA+AGG - chr4_4:51158147-51158166 Msa0686610:CDS 45.0%
!! TGTTATTTCAGACTGGGGAC+GGG - chr4_4:51158171-51158190 Msa0686610:intron 45.0%
CTACCATAGCCTCTTTGACT+TGG - chr4_4:51158321-51158340 Msa0686610:intron 45.0%
CTTCCAAGTCAAAGAGGCTA+TGG + chr4_4:51158327-51158346 None:intergenic 45.0%
GCAGGCTATGGAAATGATGA+AGG - chr4_4:51159293-51159312 Msa0686610:CDS 45.0%
CTACCCCGTTAAAGATGAAG+TGG - chr4_4:51159395-51159414 Msa0686610:CDS 45.0%
GAGCCACTTCATCTTTAACG+GGG + chr4_4:51159401-51159420 None:intergenic 45.0%
CTCCCTTCCTAAAAATGGCA+AGG + chr4_4:51159748-51159767 None:intergenic 45.0%
!!! TGCCATTTTTAGGAAGGGAG+AGG - chr4_4:51159748-51159767 Msa0686610:intron 45.0%
GACCTCTCCCTTCCTAAAAA+TGG + chr4_4:51159753-51159772 None:intergenic 45.0%
TAGGAAGGGAGAGGTCATAT+AGG - chr4_4:51159757-51159776 Msa0686610:intron 45.0%
CTTGTGCAAAGGTAACTTGG+TGG + chr4_4:51160139-51160158 None:intergenic 45.0%
!!! GGTCTTTTAGAGTCGCTTGT+TGG + chr4_4:51160244-51160263 None:intergenic 45.0%
! ACAAGCGACTCTAAAAGACC+TGG - chr4_4:51160244-51160263 Msa0686610:CDS 45.0%
CCCTTAGTGATATCATAGCC+AGG + chr4_4:51160265-51160284 None:intergenic 45.0%
GGCTATGATATCACTAAGGG+TGG - chr4_4:51160265-51160284 Msa0686610:CDS 45.0%
TTGGACCCAGGAATTCAACA+AGG - chr4_4:51160347-51160366 Msa0686610:CDS 45.0%
CCCAGGAATTCAACAAGGTT+TGG - chr4_4:51160352-51160371 Msa0686610:CDS 45.0%
GCCAAACCTTGTTGAATTCC+TGG + chr4_4:51160356-51160375 None:intergenic 45.0%
ACAAGGTTTGGCTGATTGCA+AGG - chr4_4:51160364-51160383 Msa0686610:CDS 45.0%
GAGAGAACATCATCATCACC+AGG + chr4_4:51160518-51160537 None:intergenic 45.0%
!! TAGTAAAATTTATTAAATAA+CGG + chr4_4:51156283-51156302 None:intergenic 5.0%
!! TAAGAATAAATATAAATAAT+AGG + chr4_4:51158249-51158268 None:intergenic 5.0%
!!! ATATTAAATCAAAATATTTT+TGG - chr4_4:51158792-51158811 Msa0686610:intron 5.0%
CGTTGCGCATGAAACCAACA+AGG - chr4_4:51155693-51155712 Msa0686610:CDS 50.0%
!! AGCAAAACGGTGCTGATGGA+GGG - chr4_4:51155873-51155892 Msa0686610:CDS 50.0%
ATCTCCGGCCGATGCAAAAT+AGG + chr4_4:51156201-51156220 None:intergenic 50.0%
! TTGCATCGGCCGGAGATAAT+TGG - chr4_4:51156204-51156223 Msa0686610:intron 50.0%
! TGCATCGGCCGGAGATAATT+GGG - chr4_4:51156205-51156224 Msa0686610:intron 50.0%
!! AAGGAGGGAGTGAGAGTACT+TGG - chr4_4:51156761-51156780 Msa0686610:CDS 50.0%
!! AGGAGGGAGTGAGAGTACTT+GGG - chr4_4:51156762-51156781 Msa0686610:CDS 50.0%
GAAAAAGGAACCAGTCCAGG+TGG + chr4_4:51156895-51156914 None:intergenic 50.0%
AGGCAAGTCATCGTCTGAGA+AGG + chr4_4:51156923-51156942 None:intergenic 50.0%
CCTGAGGTGGAGCTTATTGT+CGG - chr4_4:51156940-51156959 Msa0686610:intron 50.0%
TCCACAGCCTGAACAGACTA+AGG - chr4_4:51156996-51157015 Msa0686610:intron 50.0%
TCCTTAGTCTGTTCAGGCTG+TGG + chr4_4:51157000-51157019 None:intergenic 50.0%
CCTCCAAACTGAACAGGTCA+AGG + chr4_4:51157189-51157208 None:intergenic 50.0%
CCTTGACCTGTTCAGTTTGG+AGG - chr4_4:51157186-51157205 Msa0686610:intron 50.0%
TGACCTGTTCAGTTTGGAGG+TGG - chr4_4:51157189-51157208 Msa0686610:intron 50.0%
CTTCCACCTCCAAACTGAAC+AGG + chr4_4:51157195-51157214 None:intergenic 50.0%
GGTGGAAGAACTATACGTCC+TGG - chr4_4:51157207-51157226 Msa0686610:intron 50.0%
! GGTGACTTCTTAATGGACGC+GGG - chr4_4:51157651-51157670 Msa0686610:intron 50.0%
AATGGACGCGGGAAAACTGA+AGG - chr4_4:51157662-51157681 Msa0686610:CDS 50.0%
TCCATGTAGCTCACTCTGCA+GGG + chr4_4:51158007-51158026 None:intergenic 50.0%
ATCCATGTAGCTCACTCTGC+AGG + chr4_4:51158008-51158027 None:intergenic 50.0%
! GTTATTTCAGACTGGGGACG+GGG - chr4_4:51158172-51158191 Msa0686610:intron 50.0%
TTATTTCAGACTGGGGACGG+GGG - chr4_4:51158173-51158192 Msa0686610:intron 50.0%
GGCTCACTTTGTCCGAAGAA+AGG + chr4_4:51160223-51160242 None:intergenic 50.0%
GACGATCCAAATTTGGACCC+AGG - chr4_4:51160335-51160354 Msa0686610:CDS 50.0%
AAGCCAGCTTGAGGATACTG+TGG - chr4_4:51160406-51160425 Msa0686610:CDS 50.0%
!! GAGCAAAACGGTGCTGATGG+AGG - chr4_4:51155872-51155891 Msa0686610:CDS 55.0%
!! CGGTGCTGATGGAGGGAAAA+AGG - chr4_4:51155880-51155899 Msa0686610:CDS 55.0%
!! GGAGGGAGTGAGAGTACTTG+GGG - chr4_4:51156763-51156782 Msa0686610:CDS 55.0%
AAGACAAGGGGATTGCCACC+TGG - chr4_4:51156877-51156896 Msa0686610:intron 55.0%
! CTCAGACGATGACTTGCCTG+AGG - chr4_4:51156924-51156943 Msa0686610:intron 55.0%
! AGACGATGACTTGCCTGAGG+TGG - chr4_4:51156927-51156946 Msa0686610:intron 55.0%
CCGACAATAAGCTCCACCTC+AGG + chr4_4:51156943-51156962 None:intergenic 55.0%
TATCCCGGTCGCGTTTGAAG+CGG + chr4_4:51160291-51160310 None:intergenic 55.0%
GGATGCAGAAAGCCAGCTTG+AGG - chr4_4:51160397-51160416 Msa0686610:CDS 55.0%
CTGCCACAGTATCCTCAAGC+TGG + chr4_4:51160412-51160431 None:intergenic 55.0%
AAGGGGATTGCCACCTGGAC+TGG - chr4_4:51156882-51156901 Msa0686610:intron 60.0%
GCCCTGCAGAGTGAGCTACA+TGG - chr4_4:51158003-51158022 Msa0686610:intron 60.0%
GTGGCCGCTTCAAACGCGAC+CGG - chr4_4:51160284-51160303 Msa0686610:CDS 65.0%
TGGCCGCTTCAAACGCGACC+GGG - chr4_4:51160285-51160304 Msa0686610:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 51155566 51160619 51155566 ID=Msa0686610;Name=Msa0686610
chr4_4 mRNA 51155566 51160619 51155566 ID=Msa0686610-mRNA-1;Parent=Msa0686610;Name=Msa0686610-mRNA-1;_AED=0.15;_eAED=0.15;_QI=69|0.85|0.75|1|1|1|8|0|551
chr4_4 exon 51155566 51155982 51155566 ID=Msa0686610-mRNA-1:exon:13154;Parent=Msa0686610-mRNA-1
chr4_4 exon 51156745 51156888 51156745 ID=Msa0686610-mRNA-1:exon:13153;Parent=Msa0686610-mRNA-1
chr4_4 exon 51157658 51157751 51157658 ID=Msa0686610-mRNA-1:exon:13152;Parent=Msa0686610-mRNA-1
chr4_4 exon 51158115 51158173 51158115 ID=Msa0686610-mRNA-1:exon:13151;Parent=Msa0686610-mRNA-1
chr4_4 exon 51158454 51158546 51158454 ID=Msa0686610-mRNA-1:exon:13150;Parent=Msa0686610-mRNA-1
chr4_4 exon 51158832 51158984 51158832 ID=Msa0686610-mRNA-1:exon:13149;Parent=Msa0686610-mRNA-1
chr4_4 exon 51159090 51159430 51159090 ID=Msa0686610-mRNA-1:exon:13148;Parent=Msa0686610-mRNA-1
chr4_4 exon 51160196 51160619 51160196 ID=Msa0686610-mRNA-1:exon:13147;Parent=Msa0686610-mRNA-1
chr4_4 five_prime_UTR 51160551 51160619 51160551 ID=Msa0686610-mRNA-1:five_prime_utr;Parent=Msa0686610-mRNA-1
chr4_4 CDS 51160196 51160550 51160196 ID=Msa0686610-mRNA-1:cds;Parent=Msa0686610-mRNA-1
chr4_4 CDS 51159090 51159430 51159090 ID=Msa0686610-mRNA-1:cds;Parent=Msa0686610-mRNA-1
chr4_4 CDS 51158832 51158984 51158832 ID=Msa0686610-mRNA-1:cds;Parent=Msa0686610-mRNA-1
chr4_4 CDS 51158454 51158546 51158454 ID=Msa0686610-mRNA-1:cds;Parent=Msa0686610-mRNA-1
chr4_4 CDS 51158115 51158173 51158115 ID=Msa0686610-mRNA-1:cds;Parent=Msa0686610-mRNA-1
chr4_4 CDS 51157658 51157751 51157658 ID=Msa0686610-mRNA-1:cds;Parent=Msa0686610-mRNA-1
chr4_4 CDS 51156745 51156888 51156745 ID=Msa0686610-mRNA-1:cds;Parent=Msa0686610-mRNA-1
chr4_4 CDS 51155566 51155982 51155566 ID=Msa0686610-mRNA-1:cds;Parent=Msa0686610-mRNA-1
Gene Sequence

>Msa0686610

ATGGCTTCGTTATTATTACATTCTTCTTCTTCTTCTTGTTCATGTTCATGGTTCTCTTCGTTGCGCATGAAACCAACAAGGTTAAAAACTAGGAAGCTGTGTTGTGTTATGAACCAAGAAAACAACAAGGAATCTTCTGAAGCTGAAAAAACTGCTTCTGTTGATCCTATAAAGCTTGCGTTTAATAAAGCTAAAGCTTATAAAGAATCGATTAAATCAAACTCTGGTTTGGGAATTGAGCAAAACGGTGCTGATGGAGGGAAAAAGGATTTGCCGGTTTCTGTGAAGATTGCAATGGAGAAGGCCAAAAAGTATAAGCAGAATAAAGAGGTTTCTGTTAGTGAAACTGATCAAGGATTGCAAGGAGGGAGTGAGAGTACTTGGGGAGAAAATGTGAATGACAATAGTGTTGGTAAGAAGGGAGAATTGTCTGTTTCAAAGATGGATTTTGTGGGGCTTGGCTTTTCGGACAAAAAGAAGACAAGGGGATTGCCACCTGGACTGGTTCCTTTTTCAGACTCCTTCTCAGACGATGACTTGCCTGAGGTGGAGCTTATTGTCGGAGATGCAAACAAATTTGATGCTACAACAACAGCTCCACAGCCTGAACAGACTAAGGATGATGAGTCAGAACTGTACAAGCCAAAAGTTTCTACATGGGGTGTATTTCCTAGACCTAACAATATTTCAAAAACATTTGGAGGTGGAAGAACTATACGTCCTGGGGAGATTTTAGAGAGTGAAGAAGAAAAGGCTGCTAAAGAAGCACGCACGAAGCAGATGCTTGCTGCTTACAAGAAGAAATATGGATTAAATATTGATCCAAAGCTAAAAATCGAATGCGAGGAGGCATTGAAGGATGGTGACTTCTTAATGGACGCGGGAAAACTGAAGGATGCTTTACCCTACTATGAGAAAGTCATTGACAAATTACCCTTCAAGAGTGAGCTACATGGATTAGCTGCTTTACAGTGGTCGATTTGTCAAGACTCCCTCAGTAGGCACAATGAAGCTCGAAGTATGTATGAAAAGCTTCAATCTCACCCAAGTGTTAAAGTAGGCAAGAAAGCAAGACAATTCATGTACAGCTTTCAGGCTATGGAAATGATGAAGGTTAGAACAAGATCTTCTCGTTATTCAAAGAACACATTTTACCAGAGTTATTTTGATGCATTTATCGAAAACAAATCAAACTACCCCGTTAAAGATGAAGTGGCTCAAGAAAGTGAAATCAATCAGGAACAATGTGTGTTGGTCCTTTCTTCGGACAAAGTGAGCCAACAAGCGACTCTAAAAGACCTGGCTATGATATCACTAAGGGTGGCCGCTTCAAACGCGACCGGGATACTATCCGATGTGAAAACGATGATCGACGATCCAAATTTGGACCCAGGAATTCAACAAGGTTTGGCTGATTGCAAGGAGACTTTATTGGATGCAGAAAGCCAGCTTGAGGATACTGTGGCAGCTCTTTTGTCAAATGCCAAACGTGATGCTCAATTATGGTTGCAAGCAGCTTTGGCTGCAATTGATACATGTGATGCTTCAATACCTGGTGATGATGATGTTCTCTCTACAAAGAGTCGAGCATTTCGTCAATTGTGCAACATTGCTGTTGCCGTTAATAAGGCTATGACAGATGATGATAAAGCCTAA

Protein sequence

>Msa0686610

MASLLLHSSSSSCSCSWFSSLRMKPTRLKTRKLCCVMNQENNKESSEAEKTASVDPIKLAFNKAKAYKESIKSNSGLGIEQNGADGGKKDLPVSVKIAMEKAKKYKQNKEVSVSETDQGLQGGSESTWGENVNDNSVGKKGELSVSKMDFVGLGFSDKKKTRGLPPGLVPFSDSFSDDDLPEVELIVGDANKFDATTTAPQPEQTKDDESELYKPKVSTWGVFPRPNNISKTFGGGRTIRPGEILESEEEKAAKEARTKQMLAAYKKKYGLNIDPKLKIECEEALKDGDFLMDAGKLKDALPYYEKVIDKLPFKSELHGLAALQWSICQDSLSRHNEARSMYEKLQSHPSVKVGKKARQFMYSFQAMEMMKVRTRSSRYSKNTFYQSYFDAFIENKSNYPVKDEVAQESEINQEQCVLVLSSDKVSQQATLKDLAMISLRVAASNATGILSDVKTMIDDPNLDPGIQQGLADCKETLLDAESQLEDTVAALLSNAKRDAQLWLQAALAAIDTCDASIPGDDDVLSTKSRAFRQLCNIAVAVNKAMTDDDKA*