AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1458920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1458920 MtrunA17_Chr3g0123861 98.525 339 5 0 14 352 100 438 0.0 689
Msa1458920 MtrunA17_Chr2g0333221 51.917 339 152 4 14 342 88 425 9.34e-119 352
Msa1458920 MtrunA17_Chr6g0478651 45.104 337 176 3 14 342 86 421 1.41e-91 283
Msa1458920 MtrunA17_Chr3g0087741 39.583 336 177 8 15 341 108 426 1.11e-62 206
Msa1458920 MtrunA17_Chr4g0010781 38.272 324 191 4 15 336 105 421 1.13e-61 203
Msa1458920 MtrunA17_Chr5g0426951 33.429 350 199 10 15 348 102 433 4.62e-55 187
Msa1458920 MtrunA17_Chr8g0334811 33.438 320 197 9 15 325 33 345 7.43e-45 159
Msa1458920 MtrunA17_Chr2g0322181 30.368 326 208 9 24 339 41 357 1.28e-33 128
Msa1458920 MtrunA17_Chr4g0025401 32.919 322 199 9 24 337 41 353 3.37e-33 127
Msa1458920 MtrunA17_Chr7g0269841 30.699 329 193 12 15 339 45 342 3.00e-29 115
Msa1458920 MtrunA17_Chr2g0282741 27.011 348 198 12 15 339 23 337 2.25e-23 99.0
Msa1458920 MtrunA17_Chr3g0138471 27.864 323 202 11 15 333 23 318 2.82e-23 98.6
Msa1458920 MtrunA17_Chr4g0006391 26.254 339 212 12 15 339 23 337 2.23e-20 90.9
Msa1458920 MtrunA17_Chr2g0282761 25.455 330 217 13 15 331 23 336 5.46e-15 75.1
Msa1458920 MtrunA17_Chr4g0040501 56.164 73 21 3 15 78 23 93 9.53e-14 71.6
Msa1458920 MtrunA17_Chr7g0242951 57.143 56 22 1 15 70 46 99 1.78e-13 71.2
Msa1458920 MtrunA17_Chr2g0324921 60.000 55 20 1 15 67 23 77 1.29e-12 68.2
Msa1458920 MtrunA17_Chr4g0010801 35.833 120 71 3 127 244 49 164 7.04e-12 63.9
Msa1458920 MtrunA17_Chr5g0415751 25.581 129 94 2 206 333 26 153 3.08e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1458920 AT2G22360.1 79.762 336 65 2 14 348 104 437 0.0 560
Msa1458920 AT4G39960.1 74.928 347 77 3 14 352 103 447 0.0 532
Msa1458920 AT4G39960.2 74.928 347 77 3 14 352 103 447 0.0 532
Msa1458920 AT1G80030.4 51.462 342 149 6 14 342 93 430 4.96e-115 342
Msa1458920 AT1G80030.2 51.462 342 149 6 14 342 93 430 9.10e-115 342
Msa1458920 AT1G80030.3 51.462 342 149 6 14 342 93 430 9.10e-115 342
Msa1458920 AT1G80030.1 51.462 342 149 6 14 342 93 430 9.10e-115 342
Msa1458920 AT3G17830.1 48.071 337 164 3 14 339 81 417 1.25e-97 299
Msa1458920 AT5G48030.1 39.429 350 189 8 15 350 113 453 5.03e-66 216
Msa1458920 AT1G28210.1 32.635 334 203 6 15 341 67 385 3.29e-50 173
Msa1458920 AT1G28210.3 32.635 334 203 6 15 341 67 385 3.36e-50 172
Msa1458920 AT1G28210.2 32.635 334 203 6 15 341 67 385 5.82e-50 172
Msa1458920 AT5G22060.1 32.317 328 195 10 24 337 42 356 5.88e-40 146
Msa1458920 AT3G44110.1 32.440 336 203 11 24 348 42 364 3.23e-37 139
Msa1458920 AT3G44110.2 31.579 304 186 10 24 316 42 334 5.42e-31 120
Msa1458920 AT3G62600.1 28.875 329 201 11 15 339 45 344 4.34e-25 104
Msa1458920 AT5G01390.1 25.150 334 217 9 15 339 23 332 6.93e-25 103
Msa1458920 AT3G47940.1 26.586 331 217 9 15 333 23 339 3.70e-22 96.3
Msa1458920 AT3G08910.1 25.788 349 183 11 15 339 23 319 4.23e-21 92.8
Msa1458920 AT3G08970.1 58.333 60 23 1 15 74 46 103 6.57e-15 76.3
Msa1458920 AT3G08970.2 58.333 60 23 1 15 74 46 103 6.57e-15 76.3
Msa1458920 AT5G25530.2 49.398 83 33 3 15 88 23 105 1.41e-13 71.2
Msa1458920 AT4G28480.2 60.000 55 20 1 15 67 23 77 3.10e-13 69.7
Msa1458920 AT4G28480.2 26.897 145 102 3 196 339 147 288 2.96e-11 63.9
Msa1458920 AT2G20560.1 54.412 68 27 2 15 78 23 90 3.39e-13 70.1
Msa1458920 AT2G20560.1 25.185 135 99 2 206 339 202 335 4.82e-12 66.6
Msa1458920 AT4G28480.1 60.000 55 20 1 15 67 23 77 4.29e-13 70.1
Msa1458920 AT4G28480.1 25.926 135 98 2 206 339 213 346 9.33e-11 62.8
Msa1458920 AT5G01390.3 59.615 52 19 1 15 64 23 74 7.99e-12 65.1
Msa1458920 AT5G01390.2 59.615 52 19 1 15 64 23 74 1.35e-11 64.7
Msa1458920 AT5G01390.4 59.615 52 19 1 15 64 23 74 1.50e-11 63.9
Msa1458920 AT1G10350.1 52.727 55 24 1 15 67 23 77 5.68e-11 63.5
Msa1458920 AT1G10350.1 31.538 130 84 4 206 333 213 339 9.63e-11 62.8
Msa1458920 AT1G59725.1 27.692 130 90 3 206 333 194 321 5.89e-11 63.5

Find 131 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGATTCTGGTAGCCGTTTA+AGG 0.182163 tig0039907:-19281 Msa1458920:CDS
ACAGCATTGGATTATATTCT+TGG 0.219663 tig0039907:-18645 Msa1458920:three_prime_UTR
TTTGGGGAGGCAGGGCTTAA+AGG 0.247726 tig0039907:-19837 Msa1458920:CDS
CGGTCCATATATGACAAATT+TGG 0.261820 tig0039907:-19855 Msa1458920:CDS
TCACATCTGGATGATAATTT+CGG 0.265510 tig0039907:+20377 None:intergenic
GGTCCATATATGACAAATTT+GGG 0.277603 tig0039907:-19854 Msa1458920:CDS
CTCCCCAAATTTGTCATATA+TGG 0.277754 tig0039907:+19851 None:intergenic
AATCTTGGGGACTACAATTA+AGG 0.292885 tig0039907:-19118 Msa1458920:CDS
AATGAAGCATCCATAATAAA+AGG 0.301948 tig0039907:+18816 None:intergenic
CTTAAAGGTTCACCGGGATT+TGG 0.302482 tig0039907:-19822 Msa1458920:CDS
GTCTTATATTGATGCAATCT+TGG 0.313538 tig0039907:-19133 Msa1458920:CDS
ACCCCTTGCAGTACATGTTC+TGG 0.319612 tig0039907:-19357 Msa1458920:CDS
GTTCCAGCCGGTGTGGATTC+TGG 0.326305 tig0039907:-19294 Msa1458920:CDS
TTGTAAATGTTTCAGCTTAC+CGG 0.333265 tig0039907:-20408 Msa1458920:CDS
TCTCGTTTAAGCACGGGATC+CGG 0.337729 tig0039907:+19186 None:intergenic
CACATCTGGATGATAATTTC+GGG 0.342735 tig0039907:+20378 None:intergenic
TGGTGCAGAAGAGAAATTTA+AGG 0.344525 tig0039907:-20003 Msa1458920:CDS
TCTTATATTGATGCAATCTT+GGG 0.353264 tig0039907:-19132 Msa1458920:CDS
CAAATCCGCCTATGTCTATA+AGG 0.354679 tig0039907:+18764 None:intergenic
TTCCAGAGTTACCTTCATTT+CGG 0.363610 tig0039907:+19256 None:intergenic
CTTCATTTCGGACCCTTAAA+CGG 0.373498 tig0039907:+19268 None:intergenic
ATTAAGGTTCCGACTGTAGA+TGG 0.378346 tig0039907:-19102 Msa1458920:CDS
GGATTCTGGTAGCCGTTTAA+GGG 0.391936 tig0039907:-19280 Msa1458920:CDS
TGTGGTACTTGCGATGGTTC+AGG 0.397485 tig0039907:-19519 Msa1458920:CDS
TTCATGACCTTGGTATATAT+AGG 0.399180 tig0039907:-18795 Msa1458920:three_prime_UTR
ATGTAACACATGTGGTGGTC+AGG 0.403113 tig0039907:-19469 Msa1458920:CDS
AGCGACTCAAACAGATCAAA+AGG 0.403699 tig0039907:+19684 None:intergenic
GATAATTTCGGGCTAGCTTC+CGG 0.405239 tig0039907:+20389 None:intergenic
AATACTCACTTGTTCACATC+TGG 0.408035 tig0039907:+20364 None:intergenic
CTCGTTTAAGCACGGGATCC+GGG 0.419118 tig0039907:+19187 None:intergenic
ACCAGGATCAACACTTGTTA+TGG 0.426673 tig0039907:-19046 Msa1458920:CDS
GTGGATTTGAAAATCCCATC+TGG 0.440632 tig0039907:-19075 Msa1458920:CDS
CCCCTTGCAGTACATGTTCT+GGG 0.441535 tig0039907:-19356 Msa1458920:CDS
TATGACAAATTTGGGGAGGC+AGG 0.442220 tig0039907:-19846 Msa1458920:CDS
GTACATGTTCTGGGGATGGC+CGG 0.445163 tig0039907:-19347 Msa1458920:CDS
CATCTGGATGATTTAGTCCC+TGG 0.446833 tig0039907:+19489 None:intergenic
ACTTTATGCTGCAGAGATCC+TGG 0.448540 tig0039907:-20023 Msa1458920:intron
TGCTGAATAAGAAGAATATG+AGG 0.451840 tig0039907:-19005 Msa1458920:CDS
CTGTTTGAGTCGCTATTTGA+GGG 0.452801 tig0039907:-19675 Msa1458920:CDS
GGAAAGAAAGGTGGTTCTCC+TGG 0.465052 tig0039907:-19237 Msa1458920:CDS
TTAGTCAATGTTATTCATGA+AGG 0.465332 tig0039907:-18614 Msa1458920:three_prime_UTR
TTAAATTTCTCTTCTGCACC+AGG 0.476100 tig0039907:+20005 None:intergenic
ACCACCACATGTGTTACATC+TGG 0.476919 tig0039907:+19473 None:intergenic
TGCTCGTCTTGCAATGGGAC+TGG 0.478835 tig0039907:-19390 Msa1458920:CDS
TGACTTGCTCGTCTTGCAAT+GGG 0.482426 tig0039907:-19395 Msa1458920:CDS
GATGATATTTCGTGGGAAGT+TGG 0.483750 tig0039907:-18867 Msa1458920:exon
CGTTTAAGGGTCCGAAATGA+AGG 0.488601 tig0039907:-19267 Msa1458920:CDS
TCTGTTTGAGTCGCTATTTG+AGG 0.489195 tig0039907:-19676 Msa1458920:CDS
ATGACTTGCTCGTCTTGCAA+TGG 0.491631 tig0039907:-19396 Msa1458920:CDS
ATGGTCGCAGCAGACAATCT+TGG 0.494344 tig0039907:-19647 Msa1458920:CDS
CTACCAGAATCCACACCGGC+TGG 0.495088 tig0039907:+19291 None:intergenic
GAAGGTAACTCTGGAAAGAA+AGG 0.495407 tig0039907:-19249 Msa1458920:CDS
AAAGGTTCACCGGGATTTGG+TGG 0.502293 tig0039907:-19819 Msa1458920:CDS
GTTCTGGGGATGGCCGGGTG+AGG 0.503033 tig0039907:-19341 Msa1458920:CDS
GGATGCTTCATTCATGACCT+TGG 0.503641 tig0039907:-18805 Msa1458920:three_prime_UTR
TGTTGTTCTTGAAGTTATCC+CGG 0.507023 tig0039907:-19205 Msa1458920:CDS
TGGAAAAGGAGATAGAGATT+AGG 0.510570 tig0039907:-19554 Msa1458920:CDS
GGTGTCTTCTCGTTTAAGCA+CGG 0.510856 tig0039907:+19179 None:intergenic
TACATGTTCTGGGGATGGCC+GGG 0.512446 tig0039907:-19346 Msa1458920:CDS
AAGGTTCACCGGGATTTGGT+GGG 0.517220 tig0039907:-19818 Msa1458920:CDS
TAGTCAATGTTATTCATGAA+GGG 0.518862 tig0039907:-18613 Msa1458920:three_prime_UTR
TCTTGGAATGGAGCAATGAA+TGG 0.519565 tig0039907:-19630 Msa1458920:CDS
GTGTCTTCTCGTTTAAGCAC+GGG 0.522378 tig0039907:+19180 None:intergenic
GATCCTGGTTGTGTCCCAGA+TGG 0.522621 tig0039907:+19060 None:intergenic
TGCAGTACATGTTCTGGGGA+TGG 0.526866 tig0039907:-19351 Msa1458920:CDS
CACATGTGGTGGTCAGGGAC+GGG 0.527198 tig0039907:-19463 Msa1458920:CDS
GCCATAACAAGTGTTGATCC+TGG 0.527492 tig0039907:+19045 None:intergenic
GGTTCACCGGGATTTGGTGG+GGG 0.527719 tig0039907:-19816 Msa1458920:CDS
AAAACTGATTGAGGAACTCT+CGG 0.528888 tig0039907:-18923 Msa1458920:CDS
TGAGTCGCTATTTGAGGGCA+TGG 0.529744 tig0039907:-19670 Msa1458920:CDS
ATCCTGGTTGTGTCCCAGAT+GGG 0.532879 tig0039907:+19061 None:intergenic
TTGTTACTCCTTATAGACAT+AGG 0.535142 tig0039907:-18772 Msa1458920:three_prime_UTR
ACATAGGCGGATTTGAAGAA+AGG 0.536912 tig0039907:-18756 Msa1458920:three_prime_UTR
ATCCCATCTGGGACACAACC+AGG 0.538117 tig0039907:-19063 Msa1458920:CDS
CACTCAAACAAGGACTCCGT+TGG 0.539049 tig0039907:-19436 Msa1458920:CDS
ACACTTGTTATGGCAAAGAA+AGG 0.539668 tig0039907:-19036 Msa1458920:CDS
TCGCTATTTGAGGGCATGGA+TGG 0.540022 tig0039907:-19666 Msa1458920:CDS
ATGACAAATTTGGGGAGGCA+GGG 0.541510 tig0039907:-19845 Msa1458920:CDS
ACTCAAACAAGGACTCCGTT+GGG 0.546387 tig0039907:-19435 Msa1458920:CDS
CGCAGCAGACAATCTTGGAA+TGG 0.550184 tig0039907:-19642 Msa1458920:CDS
TTTACAAGAATATAAAATGT+TGG 0.551313 tig0039907:+19158 None:intergenic
CGGATTTGAAGAAAGGACAT+AGG 0.552842 tig0039907:-18749 Msa1458920:three_prime_UTR
CGATGAGAGAAAACTGATTG+AGG 0.553553 tig0039907:-18932 Msa1458920:CDS
GTCCGAAATGAAGGTAACTC+TGG 0.554384 tig0039907:-19258 Msa1458920:CDS
AGTCAATGTTATTCATGAAG+GGG 0.558327 tig0039907:-18612 Msa1458920:three_prime_UTR
AGGTTCACCGGGATTTGGTG+GGG 0.558467 tig0039907:-19817 Msa1458920:CDS
ACACATGTGGTGGTCAGGGA+CGG 0.560533 tig0039907:-19464 Msa1458920:CDS
CCCCAGAACATGTACTGCAA+GGG 0.565096 tig0039907:+19355 None:intergenic
GGCAGGGCTTAAAGGTTCAC+CGG 0.569076 tig0039907:-19829 Msa1458920:CDS
CGGTATGAGATGATATTTCG+TGG 0.569871 tig0039907:-18875 Msa1458920:exon
ATATTCTTCTTATTCAGCAG+AGG 0.569920 tig0039907:+19009 None:intergenic
GCTGAATAAGAAGAATATGA+GGG 0.578910 tig0039907:-19004 Msa1458920:CDS
AGCAAAGGCAAGACTGCCGC+CGG 0.579260 tig0039907:-18895 Msa1458920:CDS
GCGACTCAAACAGATCAAAA+GGG 0.581128 tig0039907:+19685 None:intergenic
TGTAACACATGTGGTGGTCA+GGG 0.583052 tig0039907:-19468 Msa1458920:CDS
TCTTGTCAGATGATGAGAAA+CGG 0.584943 tig0039907:-19875 Msa1458920:CDS
TCCCCAGAACATGTACTGCA+AGG 0.589752 tig0039907:+19354 None:intergenic
AACAAAGCGGATAAGTCTCA+AGG 0.598548 tig0039907:-19316 Msa1458920:CDS
GCAGGGCTTAAAGGTTCACC+GGG 0.602555 tig0039907:-19828 Msa1458920:CDS
GGTTCCGACTGTAGATGGAA+TGG 0.604592 tig0039907:-19097 Msa1458920:CDS
CACGAAATATCATCTCATAC+CGG 0.605585 tig0039907:+18876 None:intergenic
GATGGTTCAGGAGCTAAACC+AGG 0.608802 tig0039907:-19507 Msa1458920:CDS
AGAACAACAAAGAGGTCACC+AGG 0.612651 tig0039907:+19219 None:intergenic
TGGATTTGAAAATCCCATCT+GGG 0.615278 tig0039907:-19074 Msa1458920:CDS
CCCAGAACATGTACTGCAAG+GGG 0.617559 tig0039907:+19356 None:intergenic
TCTCAAGGTTCCAGCCGGTG+TGG 0.618146 tig0039907:-19301 Msa1458920:CDS
ATAAGTCTCAAGGTTCCAGC+CGG 0.620771 tig0039907:-19306 Msa1458920:CDS
CTTATATTGATGCAATCTTG+GGG 0.623095 tig0039907:-19131 Msa1458920:CDS
GACGGGTTGTCACTCAAACA+AGG 0.625091 tig0039907:-19446 Msa1458920:CDS
GGTAACTCTGGAAAGAAAGG+TGG 0.630205 tig0039907:-19246 Msa1458920:CDS
TTACTCCTTATAGACATAGG+CGG 0.632114 tig0039907:-18769 Msa1458920:three_prime_UTR
GAACTCTCGGAGTTGAGCAA+AGG 0.632985 tig0039907:-18910 Msa1458920:CDS
GAGAAGTGTGGTACTTGCGA+TGG 0.635595 tig0039907:-19525 Msa1458920:CDS
TCCAGATGTAACACATGTGG+TGG 0.637762 tig0039907:-19474 Msa1458920:CDS
TCCACCATTCCATCTACAGT+CGG 0.638944 tig0039907:+19093 None:intergenic
GGAAATCAGTAATGCGTACG+AGG 0.643998 tig0039907:-19982 Msa1458920:intron
CCCTTGCAGTACATGTTCTG+GGG 0.646072 tig0039907:-19355 Msa1458920:CDS
TAACTTCAAGAACAACAAAG+AGG 0.649565 tig0039907:+19211 None:intergenic
GACTGCTGAAAGATACCCAA+CGG 0.649757 tig0039907:+19420 None:intergenic
CATATATGACAAATTTGGGG+AGG 0.659382 tig0039907:-19850 Msa1458920:CDS
GGTATGAGATGATATTTCGT+GGG 0.660372 tig0039907:-18874 Msa1458920:exon
TCCGACTGTAGATGGAATGG+TGG 0.660929 tig0039907:-19094 Msa1458920:CDS
GTCCATATATGACAAATTTG+GGG 0.662707 tig0039907:-19853 Msa1458920:CDS
CTGAATAAGAAGAATATGAG+GGG 0.668517 tig0039907:-19003 Msa1458920:CDS
TCATCCAGATGTAACACATG+TGG 0.669998 tig0039907:-19477 Msa1458920:CDS
GTAACAACCTATATATACCA+AGG 0.685901 tig0039907:+18788 None:intergenic
ATTAGGCGACTAGAGAAGTG+TGG 0.694061 tig0039907:-19537 Msa1458920:CDS
ATGGTTCAGGAGCTAAACCA+GGG 0.708190 tig0039907:-19506 Msa1458920:CDS
GCCGGGTGAGGAAAACAAAG+CGG 0.718931 tig0039907:-19329 Msa1458920:CDS
GAAATATCATCTCATACCGG+CGG 0.725473 tig0039907:+18879 None:intergenic
ACGGCTACCAGAATCCACAC+CGG 0.739891 tig0039907:+19287 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATTTTCCTTTTATTA+TGG - tig0039907:20220-20239 Msa1458920:intron 10.0%
!!! ATTTTATTTTCCTTTTATTA+TGG - tig0039907:20220-20239 Msa1458920:intron 10.0%
!! TTTACAAGAATATAAAATGT+TGG + tig0039907:19891-19910 None:intergenic 15.0%
!!! TTACATTTTAGTTATATTCT+TGG - tig0039907:20365-20384 Msa1458920:intron 15.0%
!! TTTACAAGAATATAAAATGT+TGG + tig0039907:19891-19910 None:intergenic 15.0%
!!! TTACATTTTAGTTATATTCT+TGG - tig0039907:20365-20384 Msa1458920:intron 15.0%
!! AATTATGCAACTAGAAATTA+TGG + tig0039907:18940-18959 None:intergenic 20.0%
!!! TTGCATAATTTTTTTTCACA+TGG - tig0039907:18950-18969 Msa1458920:CDS 20.0%
!! TAAAGTGAATACACATATAT+AGG + tig0039907:19009-19028 None:intergenic 20.0%
!! TTAAAATTCTCCATAATCTT+TGG + tig0039907:19282-19301 None:intergenic 20.0%
!! TGTAAAATCTTTGTGATTAT+AGG - tig0039907:19328-19347 Msa1458920:CDS 20.0%
!! AATTATGCAACTAGAAATTA+TGG + tig0039907:18940-18959 None:intergenic 20.0%
!!! TTGCATAATTTTTTTTCACA+TGG - tig0039907:18950-18969 Msa1458920:CDS 20.0%
!! TAAAGTGAATACACATATAT+AGG + tig0039907:19009-19028 None:intergenic 20.0%
!! TTAAAATTCTCCATAATCTT+TGG + tig0039907:19282-19301 None:intergenic 20.0%
!! TGTAAAATCTTTGTGATTAT+AGG - tig0039907:19328-19347 Msa1458920:CDS 20.0%
! TAGAAAAGGAAAAAAAGAGT+GGG + tig0039907:18768-18787 None:intergenic 25.0%
! TATGAACTAACCATGAATTA+GGG + tig0039907:19119-19138 None:intergenic 25.0%
! TTATGAACTAACCATGAATT+AGG + tig0039907:19120-19139 None:intergenic 25.0%
!! ATGTAACTATAATCCTTTTC+AGG - tig0039907:19148-19167 Msa1458920:CDS 25.0%
!!! AACTTTAAAGAAGCTGTTTT+CGG - tig0039907:19467-19486 Msa1458920:CDS 25.0%
! TCTTATATTGATGCAATCTT+GGG - tig0039907:19914-19933 Msa1458920:intron 25.0%
!! AATGAAGCATCCATAATAAA+AGG + tig0039907:20233-20252 None:intergenic 25.0%
! TTAGTCAATGTTATTCATGA+AGG - tig0039907:20432-20451 Msa1458920:CDS 25.0%
! TAGTCAATGTTATTCATGAA+GGG - tig0039907:20433-20452 Msa1458920:CDS 25.0%
! TAGAAAAGGAAAAAAAGAGT+GGG + tig0039907:18768-18787 None:intergenic 25.0%
! TATGAACTAACCATGAATTA+GGG + tig0039907:19119-19138 None:intergenic 25.0%
! TTATGAACTAACCATGAATT+AGG + tig0039907:19120-19139 None:intergenic 25.0%
!! ATGTAACTATAATCCTTTTC+AGG - tig0039907:19148-19167 Msa1458920:CDS 25.0%
!!! AACTTTAAAGAAGCTGTTTT+CGG - tig0039907:19467-19486 Msa1458920:CDS 25.0%
! TCTTATATTGATGCAATCTT+GGG - tig0039907:19914-19933 Msa1458920:intron 25.0%
!! AATGAAGCATCCATAATAAA+AGG + tig0039907:20233-20252 None:intergenic 25.0%
! TTAGTCAATGTTATTCATGA+AGG - tig0039907:20432-20451 Msa1458920:CDS 25.0%
! TAGTCAATGTTATTCATGAA+GGG - tig0039907:20433-20452 Msa1458920:CDS 25.0%
TTGTAAATGTTTCAGCTTAC+CGG - tig0039907:18638-18657 Msa1458920:three_prime_UTR 30.0%
TCACATCTGGATGATAATTT+CGG + tig0039907:18672-18691 None:intergenic 30.0%
AGAAAGCAGATAACTTCAAT+GGG + tig0039907:18723-18742 None:intergenic 30.0%
TAGAAAGCAGATAACTTCAA+TGG + tig0039907:18724-18743 None:intergenic 30.0%
CTAGAAAAGGAAAAAAAGAG+TGG + tig0039907:18769-18788 None:intergenic 30.0%
GCAATAGTGAAATCTAGAAA+AGG + tig0039907:18782-18801 None:intergenic 30.0%
TCTAGATTTCACTATTGCTA+TGG - tig0039907:18784-18803 Msa1458920:three_prime_UTR 30.0%
GGTCCATATATGACAAATTT+GGG - tig0039907:19192-19211 Msa1458920:CDS 30.0%
GTCCATATATGACAAATTTG+GGG - tig0039907:19193-19212 Msa1458920:CDS 30.0%
AAATTCTCCATAATCTTTGG+AGG + tig0039907:19279-19298 None:intergenic 30.0%
TAACTTCAAGAACAACAAAG+AGG + tig0039907:19838-19857 None:intergenic 30.0%
GTCTTATATTGATGCAATCT+TGG - tig0039907:19913-19932 Msa1458920:intron 30.0%
CTTATATTGATGCAATCTTG+GGG - tig0039907:19915-19934 Msa1458920:intron 30.0%
ATATTCTTCTTATTCAGCAG+AGG + tig0039907:20040-20059 None:intergenic 30.0%
TGCTGAATAAGAAGAATATG+AGG - tig0039907:20041-20060 Msa1458920:intron 30.0%
GCTGAATAAGAAGAATATGA+GGG - tig0039907:20042-20061 Msa1458920:intron 30.0%
CTGAATAAGAAGAATATGAG+GGG - tig0039907:20043-20062 Msa1458920:intron 30.0%
TTCATGACCTTGGTATATAT+AGG - tig0039907:20251-20270 Msa1458920:intron 30.0%
GTAACAACCTATATATACCA+AGG + tig0039907:20261-20280 None:intergenic 30.0%
TTGTTACTCCTTATAGACAT+AGG - tig0039907:20274-20293 Msa1458920:intron 30.0%
!! TCATCTATTGCTTGTTTTCT+TGG - tig0039907:20339-20358 Msa1458920:intron 30.0%
!!! ATGTTGTTTTTTGACAGCAT+TGG - tig0039907:20388-20407 Msa1458920:CDS 30.0%
! ACAGCATTGGATTATATTCT+TGG - tig0039907:20401-20420 Msa1458920:CDS 30.0%
AGTCAATGTTATTCATGAAG+GGG - tig0039907:20434-20453 Msa1458920:CDS 30.0%
TTGTAAATGTTTCAGCTTAC+CGG - tig0039907:18638-18657 Msa1458920:three_prime_UTR 30.0%
TCACATCTGGATGATAATTT+CGG + tig0039907:18672-18691 None:intergenic 30.0%
AGAAAGCAGATAACTTCAAT+GGG + tig0039907:18723-18742 None:intergenic 30.0%
TAGAAAGCAGATAACTTCAA+TGG + tig0039907:18724-18743 None:intergenic 30.0%
CTAGAAAAGGAAAAAAAGAG+TGG + tig0039907:18769-18788 None:intergenic 30.0%
GCAATAGTGAAATCTAGAAA+AGG + tig0039907:18782-18801 None:intergenic 30.0%
TCTAGATTTCACTATTGCTA+TGG - tig0039907:18784-18803 Msa1458920:three_prime_UTR 30.0%
GGTCCATATATGACAAATTT+GGG - tig0039907:19192-19211 Msa1458920:CDS 30.0%
GTCCATATATGACAAATTTG+GGG - tig0039907:19193-19212 Msa1458920:CDS 30.0%
AAATTCTCCATAATCTTTGG+AGG + tig0039907:19279-19298 None:intergenic 30.0%
TAACTTCAAGAACAACAAAG+AGG + tig0039907:19838-19857 None:intergenic 30.0%
GTCTTATATTGATGCAATCT+TGG - tig0039907:19913-19932 Msa1458920:intron 30.0%
CTTATATTGATGCAATCTTG+GGG - tig0039907:19915-19934 Msa1458920:intron 30.0%
ATATTCTTCTTATTCAGCAG+AGG + tig0039907:20040-20059 None:intergenic 30.0%
TGCTGAATAAGAAGAATATG+AGG - tig0039907:20041-20060 Msa1458920:intron 30.0%
GCTGAATAAGAAGAATATGA+GGG - tig0039907:20042-20061 Msa1458920:intron 30.0%
CTGAATAAGAAGAATATGAG+GGG - tig0039907:20043-20062 Msa1458920:intron 30.0%
TTCATGACCTTGGTATATAT+AGG - tig0039907:20251-20270 Msa1458920:intron 30.0%
GTAACAACCTATATATACCA+AGG + tig0039907:20261-20280 None:intergenic 30.0%
TTGTTACTCCTTATAGACAT+AGG - tig0039907:20274-20293 Msa1458920:intron 30.0%
!! TCATCTATTGCTTGTTTTCT+TGG - tig0039907:20339-20358 Msa1458920:intron 30.0%
!!! ATGTTGTTTTTTGACAGCAT+TGG - tig0039907:20388-20407 Msa1458920:CDS 30.0%
! ACAGCATTGGATTATATTCT+TGG - tig0039907:20401-20420 Msa1458920:CDS 30.0%
AGTCAATGTTATTCATGAAG+GGG - tig0039907:20434-20453 Msa1458920:CDS 30.0%
CACATCTGGATGATAATTTC+GGG + tig0039907:18671-18690 None:intergenic 35.0%
AATACTCACTTGTTCACATC+TGG + tig0039907:18685-18704 None:intergenic 35.0%
CACTATTGCTATGGACAAAA+TGG - tig0039907:18793-18812 Msa1458920:three_prime_UTR 35.0%
! TTGGTATAATCTAAGACACC+CGG + tig0039907:18820-18839 None:intergenic 35.0%
ACTAGAAATTATGGCATGAC+AGG + tig0039907:18931-18950 None:intergenic 35.0%
TTAAATTTCTCTTCTGCACC+AGG + tig0039907:19044-19063 None:intergenic 35.0%
TGGTGCAGAAGAGAAATTTA+AGG - tig0039907:19043-19062 Msa1458920:CDS 35.0%
TCTTGTCAGATGATGAGAAA+CGG - tig0039907:19171-19190 Msa1458920:CDS 35.0%
CGGTCCATATATGACAAATT+TGG - tig0039907:19191-19210 Msa1458920:CDS 35.0%
CTCCCCAAATTTGTCATATA+TGG + tig0039907:19198-19217 None:intergenic 35.0%
CATATATGACAAATTTGGGG+AGG - tig0039907:19196-19215 Msa1458920:CDS 35.0%
! CATAATCTTTGGAGGTAACT+TGG + tig0039907:19271-19290 None:intergenic 35.0%
CAAGTTACCTCCAAAGATTA+TGG - tig0039907:19269-19288 Msa1458920:CDS 35.0%
TGGAAAAGGAGATAGAGATT+AGG - tig0039907:19492-19511 Msa1458920:CDS 35.0%
TTCCAGAGTTACCTTCATTT+CGG + tig0039907:19793-19812 None:intergenic 35.0%
TGTTGTTCTTGAAGTTATCC+CGG - tig0039907:19841-19860 Msa1458920:CDS 35.0%
AATCTTGGGGACTACAATTA+AGG - tig0039907:19928-19947 Msa1458920:intron 35.0%
TGGATTTGAAAATCCCATCT+GGG - tig0039907:19972-19991 Msa1458920:intron 35.0%
!! ACACTTGTTATGGCAAAGAA+AGG - tig0039907:20010-20029 Msa1458920:CDS 35.0%
AAAACTGATTGAGGAACTCT+CGG - tig0039907:20123-20142 Msa1458920:intron 35.0%
CACGAAATATCATCTCATAC+CGG + tig0039907:20173-20192 None:intergenic 35.0%
GGTATGAGATGATATTTCGT+GGG - tig0039907:20172-20191 Msa1458920:intron 35.0%
TTACTCCTTATAGACATAGG+CGG - tig0039907:20277-20296 Msa1458920:intron 35.0%
AATGTTATTCATGAAGGGGA+AGG - tig0039907:20438-20457 Msa1458920:CDS 35.0%
CACATCTGGATGATAATTTC+GGG + tig0039907:18671-18690 None:intergenic 35.0%
AATACTCACTTGTTCACATC+TGG + tig0039907:18685-18704 None:intergenic 35.0%
CACTATTGCTATGGACAAAA+TGG - tig0039907:18793-18812 Msa1458920:three_prime_UTR 35.0%
! TTGGTATAATCTAAGACACC+CGG + tig0039907:18820-18839 None:intergenic 35.0%
ACTAGAAATTATGGCATGAC+AGG + tig0039907:18931-18950 None:intergenic 35.0%
TTAAATTTCTCTTCTGCACC+AGG + tig0039907:19044-19063 None:intergenic 35.0%
TGGTGCAGAAGAGAAATTTA+AGG - tig0039907:19043-19062 Msa1458920:CDS 35.0%
TCTTGTCAGATGATGAGAAA+CGG - tig0039907:19171-19190 Msa1458920:CDS 35.0%
CGGTCCATATATGACAAATT+TGG - tig0039907:19191-19210 Msa1458920:CDS 35.0%
CTCCCCAAATTTGTCATATA+TGG + tig0039907:19198-19217 None:intergenic 35.0%
CATATATGACAAATTTGGGG+AGG - tig0039907:19196-19215 Msa1458920:CDS 35.0%
! CATAATCTTTGGAGGTAACT+TGG + tig0039907:19271-19290 None:intergenic 35.0%
CAAGTTACCTCCAAAGATTA+TGG - tig0039907:19269-19288 Msa1458920:CDS 35.0%
TGGAAAAGGAGATAGAGATT+AGG - tig0039907:19492-19511 Msa1458920:CDS 35.0%
TTCCAGAGTTACCTTCATTT+CGG + tig0039907:19793-19812 None:intergenic 35.0%
TGTTGTTCTTGAAGTTATCC+CGG - tig0039907:19841-19860 Msa1458920:CDS 35.0%
AATCTTGGGGACTACAATTA+AGG - tig0039907:19928-19947 Msa1458920:intron 35.0%
TGGATTTGAAAATCCCATCT+GGG - tig0039907:19972-19991 Msa1458920:intron 35.0%
!! ACACTTGTTATGGCAAAGAA+AGG - tig0039907:20010-20029 Msa1458920:CDS 35.0%
AAAACTGATTGAGGAACTCT+CGG - tig0039907:20123-20142 Msa1458920:intron 35.0%
CACGAAATATCATCTCATAC+CGG + tig0039907:20173-20192 None:intergenic 35.0%
GGTATGAGATGATATTTCGT+GGG - tig0039907:20172-20191 Msa1458920:intron 35.0%
TTACTCCTTATAGACATAGG+CGG - tig0039907:20277-20296 Msa1458920:intron 35.0%
GATAACTTCAATGGGAAGTG+AGG + tig0039907:18715-18734 None:intergenic 40.0%
TTGCTATGGACAAAATGGTC+CGG - tig0039907:18798-18817 Msa1458920:three_prime_UTR 40.0%
AAATGACATGCTGCAAGCAT+TGG + tig0039907:18839-18858 None:intergenic 40.0%
CTTCATCTAACAGGCAATTC+AGG + tig0039907:18885-18904 None:intergenic 40.0%
GCTAAACGACTTCATCTAAC+AGG + tig0039907:18894-18913 None:intergenic 40.0%
ACACAACTGACCCTAATTCA+TGG - tig0039907:19106-19125 Msa1458920:CDS 40.0%
TCATCTGACAAGACCTGAAA+AGG + tig0039907:19164-19183 None:intergenic 40.0%
GCGACTCAAACAGATCAAAA+GGG + tig0039907:19364-19383 None:intergenic 40.0%
AGCGACTCAAACAGATCAAA+AGG + tig0039907:19365-19384 None:intergenic 40.0%
TCTGTTTGAGTCGCTATTTG+AGG - tig0039907:19370-19389 Msa1458920:CDS 40.0%
CTGTTTGAGTCGCTATTTGA+GGG - tig0039907:19371-19390 Msa1458920:CDS 40.0%
TCTTGGAATGGAGCAATGAA+TGG - tig0039907:19416-19435 Msa1458920:CDS 40.0%
!! TAAAGAAGCTGTTTTCGGAG+TGG - tig0039907:19472-19491 Msa1458920:CDS 40.0%
TCATCCAGATGTAACACATG+TGG - tig0039907:19569-19588 Msa1458920:CDS 40.0%
AACAAAGCGGATAAGTCTCA+AGG - tig0039907:19730-19749 Msa1458920:intron 40.0%
CTTCATTTCGGACCCTTAAA+CGG + tig0039907:19781-19800 None:intergenic 40.0%
! GAAGGTAACTCTGGAAAGAA+AGG - tig0039907:19797-19816 Msa1458920:intron 40.0%
ATTAAGGTTCCGACTGTAGA+TGG - tig0039907:19944-19963 Msa1458920:intron 40.0%
GTGGATTTGAAAATCCCATC+TGG - tig0039907:19971-19990 Msa1458920:intron 40.0%
! ACCAGGATCAACACTTGTTA+TGG - tig0039907:20000-20019 Msa1458920:CDS 40.0%
!!! TCATCGCTGCTCAGTTTTTT+AGG + tig0039907:20100-20119 None:intergenic 40.0%
CGATGAGAGAAAACTGATTG+AGG - tig0039907:20114-20133 Msa1458920:intron 40.0%
GAAATATCATCTCATACCGG+CGG + tig0039907:20170-20189 None:intergenic 40.0%
CGGTATGAGATGATATTTCG+TGG - tig0039907:20171-20190 Msa1458920:intron 40.0%
GATGATATTTCGTGGGAAGT+TGG - tig0039907:20179-20198 Msa1458920:intron 40.0%
CAAATCCGCCTATGTCTATA+AGG + tig0039907:20285-20304 None:intergenic 40.0%
! ACATAGGCGGATTTGAAGAA+AGG - tig0039907:20290-20309 Msa1458920:intron 40.0%
CGGATTTGAAGAAAGGACAT+AGG - tig0039907:20297-20316 Msa1458920:intron 40.0%
GATAACTTCAATGGGAAGTG+AGG + tig0039907:18715-18734 None:intergenic 40.0%
TTGCTATGGACAAAATGGTC+CGG - tig0039907:18798-18817 Msa1458920:three_prime_UTR 40.0%
AAATGACATGCTGCAAGCAT+TGG + tig0039907:18839-18858 None:intergenic 40.0%
CTTCATCTAACAGGCAATTC+AGG + tig0039907:18885-18904 None:intergenic 40.0%
GCTAAACGACTTCATCTAAC+AGG + tig0039907:18894-18913 None:intergenic 40.0%
ACACAACTGACCCTAATTCA+TGG - tig0039907:19106-19125 Msa1458920:CDS 40.0%
TCATCTGACAAGACCTGAAA+AGG + tig0039907:19164-19183 None:intergenic 40.0%
GCGACTCAAACAGATCAAAA+GGG + tig0039907:19364-19383 None:intergenic 40.0%
AGCGACTCAAACAGATCAAA+AGG + tig0039907:19365-19384 None:intergenic 40.0%
TCTGTTTGAGTCGCTATTTG+AGG - tig0039907:19370-19389 Msa1458920:CDS 40.0%
CTGTTTGAGTCGCTATTTGA+GGG - tig0039907:19371-19390 Msa1458920:CDS 40.0%
TCTTGGAATGGAGCAATGAA+TGG - tig0039907:19416-19435 Msa1458920:CDS 40.0%
!! TAAAGAAGCTGTTTTCGGAG+TGG - tig0039907:19472-19491 Msa1458920:CDS 40.0%
TCATCCAGATGTAACACATG+TGG - tig0039907:19569-19588 Msa1458920:CDS 40.0%
AACAAAGCGGATAAGTCTCA+AGG - tig0039907:19730-19749 Msa1458920:intron 40.0%
CTTCATTTCGGACCCTTAAA+CGG + tig0039907:19781-19800 None:intergenic 40.0%
! GAAGGTAACTCTGGAAAGAA+AGG - tig0039907:19797-19816 Msa1458920:intron 40.0%
ATTAAGGTTCCGACTGTAGA+TGG - tig0039907:19944-19963 Msa1458920:intron 40.0%
GTGGATTTGAAAATCCCATC+TGG - tig0039907:19971-19990 Msa1458920:intron 40.0%
! ACCAGGATCAACACTTGTTA+TGG - tig0039907:20000-20019 Msa1458920:CDS 40.0%
!!! TCATCGCTGCTCAGTTTTTT+AGG + tig0039907:20100-20119 None:intergenic 40.0%
CGATGAGAGAAAACTGATTG+AGG - tig0039907:20114-20133 Msa1458920:intron 40.0%
GAAATATCATCTCATACCGG+CGG + tig0039907:20170-20189 None:intergenic 40.0%
CGGTATGAGATGATATTTCG+TGG - tig0039907:20171-20190 Msa1458920:intron 40.0%
GATGATATTTCGTGGGAAGT+TGG - tig0039907:20179-20198 Msa1458920:intron 40.0%
CAAATCCGCCTATGTCTATA+AGG + tig0039907:20285-20304 None:intergenic 40.0%
! ACATAGGCGGATTTGAAGAA+AGG - tig0039907:20290-20309 Msa1458920:intron 40.0%
CGGATTTGAAGAAAGGACAT+AGG - tig0039907:20297-20316 Msa1458920:intron 40.0%
!! GATAATTTCGGGCTAGCTTC+CGG + tig0039907:18660-18679 None:intergenic 45.0%
AGTGGGAACAGAGCAAAAGA+CGG + tig0039907:18751-18770 None:intergenic 45.0%
TGCTATGGACAAAATGGTCC+GGG - tig0039907:18799-18818 Msa1458920:three_prime_UTR 45.0%
ACTTTATGCTGCAGAGATCC+TGG - tig0039907:19023-19042 Msa1458920:CDS 45.0%
GGAAATCAGTAATGCGTACG+AGG - tig0039907:19064-19083 Msa1458920:CDS 45.0%
TGCGTACGAGGTAAAACTAG+AGG - tig0039907:19076-19095 Msa1458920:CDS 45.0%
TATGACAAATTTGGGGAGGC+AGG - tig0039907:19200-19219 Msa1458920:CDS 45.0%
ATGACAAATTTGGGGAGGCA+GGG - tig0039907:19201-19220 Msa1458920:CDS 45.0%
CTTAAAGGTTCACCGGGATT+TGG - tig0039907:19224-19243 Msa1458920:CDS 45.0%
!! AGCTGTTTTCGGAGTGGAAA+AGG - tig0039907:19478-19497 Msa1458920:CDS 45.0%
ATTAGGCGACTAGAGAAGTG+TGG - tig0039907:19509-19528 Msa1458920:CDS 45.0%
ATGGTTCAGGAGCTAAACCA+GGG - tig0039907:19540-19559 Msa1458920:CDS 45.0%
CATCTGGATGATTTAGTCCC+TGG + tig0039907:19560-19579 None:intergenic 45.0%
TCCAGATGTAACACATGTGG+TGG - tig0039907:19572-19591 Msa1458920:CDS 45.0%
ACCACCACATGTGTTACATC+TGG + tig0039907:19576-19595 None:intergenic 45.0%
ATGTAACACATGTGGTGGTC+AGG - tig0039907:19577-19596 Msa1458920:CDS 45.0%
TGTAACACATGTGGTGGTCA+GGG - tig0039907:19578-19597 Msa1458920:CDS 45.0%
ACTCAAACAAGGACTCCGTT+GGG - tig0039907:19611-19630 Msa1458920:CDS 45.0%
GACTGCTGAAAGATACCCAA+CGG + tig0039907:19629-19648 None:intergenic 45.0%
!! ATGACTTGCTCGTCTTGCAA+TGG - tig0039907:19650-19669 Msa1458920:CDS 45.0%
!! TGACTTGCTCGTCTTGCAAT+GGG - tig0039907:19651-19670 Msa1458920:CDS 45.0%
ATAAGTCTCAAGGTTCCAGC+CGG - tig0039907:19740-19759 Msa1458920:intron 45.0%
TGGATTCTGGTAGCCGTTTA+AGG - tig0039907:19765-19784 Msa1458920:intron 45.0%
GGATTCTGGTAGCCGTTTAA+GGG - tig0039907:19766-19785 Msa1458920:intron 45.0%
CGTTTAAGGGTCCGAAATGA+AGG - tig0039907:19779-19798 Msa1458920:intron 45.0%
GTCCGAAATGAAGGTAACTC+TGG - tig0039907:19788-19807 Msa1458920:intron 45.0%
! GGTAACTCTGGAAAGAAAGG+TGG - tig0039907:19800-19819 Msa1458920:intron 45.0%
AGAACAACAAAGAGGTCACC+AGG + tig0039907:19830-19849 None:intergenic 45.0%
GTGTCTTCTCGTTTAAGCAC+GGG + tig0039907:19869-19888 None:intergenic 45.0%
GGTGTCTTCTCGTTTAAGCA+CGG + tig0039907:19870-19889 None:intergenic 45.0%
TCCACCATTCCATCTACAGT+CGG + tig0039907:19956-19975 None:intergenic 45.0%
!! GCCATAACAAGTGTTGATCC+TGG + tig0039907:20004-20023 None:intergenic 45.0%
GGATGCTTCATTCATGACCT+TGG - tig0039907:20241-20260 Msa1458920:intron 45.0%
!! GATAATTTCGGGCTAGCTTC+CGG + tig0039907:18660-18679 None:intergenic 45.0%
AGTGGGAACAGAGCAAAAGA+CGG + tig0039907:18751-18770 None:intergenic 45.0%
TGCTATGGACAAAATGGTCC+GGG - tig0039907:18799-18818 Msa1458920:three_prime_UTR 45.0%
ACTTTATGCTGCAGAGATCC+TGG - tig0039907:19023-19042 Msa1458920:CDS 45.0%
GGAAATCAGTAATGCGTACG+AGG - tig0039907:19064-19083 Msa1458920:CDS 45.0%
TGCGTACGAGGTAAAACTAG+AGG - tig0039907:19076-19095 Msa1458920:CDS 45.0%
TATGACAAATTTGGGGAGGC+AGG - tig0039907:19200-19219 Msa1458920:CDS 45.0%
ATGACAAATTTGGGGAGGCA+GGG - tig0039907:19201-19220 Msa1458920:CDS 45.0%
CTTAAAGGTTCACCGGGATT+TGG - tig0039907:19224-19243 Msa1458920:CDS 45.0%
!! AGCTGTTTTCGGAGTGGAAA+AGG - tig0039907:19478-19497 Msa1458920:CDS 45.0%
ATTAGGCGACTAGAGAAGTG+TGG - tig0039907:19509-19528 Msa1458920:CDS 45.0%
ATGGTTCAGGAGCTAAACCA+GGG - tig0039907:19540-19559 Msa1458920:CDS 45.0%
CATCTGGATGATTTAGTCCC+TGG + tig0039907:19560-19579 None:intergenic 45.0%
TCCAGATGTAACACATGTGG+TGG - tig0039907:19572-19591 Msa1458920:CDS 45.0%
ACCACCACATGTGTTACATC+TGG + tig0039907:19576-19595 None:intergenic 45.0%
ATGTAACACATGTGGTGGTC+AGG - tig0039907:19577-19596 Msa1458920:CDS 45.0%
TGTAACACATGTGGTGGTCA+GGG - tig0039907:19578-19597 Msa1458920:CDS 45.0%
ACTCAAACAAGGACTCCGTT+GGG - tig0039907:19611-19630 Msa1458920:CDS 45.0%
GACTGCTGAAAGATACCCAA+CGG + tig0039907:19629-19648 None:intergenic 45.0%
!! ATGACTTGCTCGTCTTGCAA+TGG - tig0039907:19650-19669 Msa1458920:CDS 45.0%
!! TGACTTGCTCGTCTTGCAAT+GGG - tig0039907:19651-19670 Msa1458920:CDS 45.0%
ATAAGTCTCAAGGTTCCAGC+CGG - tig0039907:19740-19759 Msa1458920:intron 45.0%
TGGATTCTGGTAGCCGTTTA+AGG - tig0039907:19765-19784 Msa1458920:intron 45.0%
GGATTCTGGTAGCCGTTTAA+GGG - tig0039907:19766-19785 Msa1458920:intron 45.0%
CGTTTAAGGGTCCGAAATGA+AGG - tig0039907:19779-19798 Msa1458920:intron 45.0%
GTCCGAAATGAAGGTAACTC+TGG - tig0039907:19788-19807 Msa1458920:intron 45.0%
! GGTAACTCTGGAAAGAAAGG+TGG - tig0039907:19800-19819 Msa1458920:intron 45.0%
AGAACAACAAAGAGGTCACC+AGG + tig0039907:19830-19849 None:intergenic 45.0%
GTGTCTTCTCGTTTAAGCAC+GGG + tig0039907:19869-19888 None:intergenic 45.0%
GGTGTCTTCTCGTTTAAGCA+CGG + tig0039907:19870-19889 None:intergenic 45.0%
TCCACCATTCCATCTACAGT+CGG + tig0039907:19956-19975 None:intergenic 45.0%
!! GCCATAACAAGTGTTGATCC+TGG + tig0039907:20004-20023 None:intergenic 45.0%
GGATGCTTCATTCATGACCT+TGG - tig0039907:20241-20260 Msa1458920:intron 45.0%
AAAGGTTCACCGGGATTTGG+TGG - tig0039907:19227-19246 Msa1458920:CDS 50.0%
! AAGGTTCACCGGGATTTGGT+GGG - tig0039907:19228-19247 Msa1458920:CDS 50.0%
TGAGTCGCTATTTGAGGGCA+TGG - tig0039907:19376-19395 Msa1458920:CDS 50.0%
! TCGCTATTTGAGGGCATGGA+TGG - tig0039907:19380-19399 Msa1458920:CDS 50.0%
ATGGTCGCAGCAGACAATCT+TGG - tig0039907:19399-19418 Msa1458920:CDS 50.0%
CGCAGCAGACAATCTTGGAA+TGG - tig0039907:19404-19423 Msa1458920:CDS 50.0%
! GAGAAGTGTGGTACTTGCGA+TGG - tig0039907:19521-19540 Msa1458920:CDS 50.0%
TGTGGTACTTGCGATGGTTC+AGG - tig0039907:19527-19546 Msa1458920:CDS 50.0%
GATGGTTCAGGAGCTAAACC+AGG - tig0039907:19539-19558 Msa1458920:CDS 50.0%
!! GACGGGTTGTCACTCAAACA+AGG - tig0039907:19600-19619 Msa1458920:CDS 50.0%
CACTCAAACAAGGACTCCGT+TGG - tig0039907:19610-19629 Msa1458920:CDS 50.0%
ACCCCTTGCAGTACATGTTC+TGG - tig0039907:19689-19708 Msa1458920:CDS 50.0%
CCCAGAACATGTACTGCAAG+GGG + tig0039907:19693-19712 None:intergenic 50.0%
CCCCTTGCAGTACATGTTCT+GGG - tig0039907:19690-19709 Msa1458920:CDS 50.0%
CCCCAGAACATGTACTGCAA+GGG + tig0039907:19694-19713 None:intergenic 50.0%
CCCTTGCAGTACATGTTCTG+GGG - tig0039907:19691-19710 Msa1458920:CDS 50.0%
TCCCCAGAACATGTACTGCA+AGG + tig0039907:19695-19714 None:intergenic 50.0%
!! TGCAGTACATGTTCTGGGGA+TGG - tig0039907:19695-19714 Msa1458920:CDS 50.0%
!!! TCCGCTTTGTTTTCCTCACC+CGG + tig0039907:19721-19740 None:intergenic 50.0%
GGAAAGAAAGGTGGTTCTCC+TGG - tig0039907:19809-19828 Msa1458920:CDS 50.0%
TCTCGTTTAAGCACGGGATC+CGG + tig0039907:19863-19882 None:intergenic 50.0%
GGTTCCGACTGTAGATGGAA+TGG - tig0039907:19949-19968 Msa1458920:intron 50.0%
TCCGACTGTAGATGGAATGG+TGG - tig0039907:19952-19971 Msa1458920:intron 50.0%
ATCCTGGTTGTGTCCCAGAT+GGG + tig0039907:19988-20007 None:intergenic 50.0%
GAACTCTCGGAGTTGAGCAA+AGG - tig0039907:20136-20155 Msa1458920:intron 50.0%
AAAGGTTCACCGGGATTTGG+TGG - tig0039907:19227-19246 Msa1458920:CDS 50.0%
! AAGGTTCACCGGGATTTGGT+GGG - tig0039907:19228-19247 Msa1458920:CDS 50.0%
TGAGTCGCTATTTGAGGGCA+TGG - tig0039907:19376-19395 Msa1458920:CDS 50.0%
! TCGCTATTTGAGGGCATGGA+TGG - tig0039907:19380-19399 Msa1458920:CDS 50.0%
ATGGTCGCAGCAGACAATCT+TGG - tig0039907:19399-19418 Msa1458920:CDS 50.0%
CGCAGCAGACAATCTTGGAA+TGG - tig0039907:19404-19423 Msa1458920:CDS 50.0%
! GAGAAGTGTGGTACTTGCGA+TGG - tig0039907:19521-19540 Msa1458920:CDS 50.0%
TGTGGTACTTGCGATGGTTC+AGG - tig0039907:19527-19546 Msa1458920:CDS 50.0%
GATGGTTCAGGAGCTAAACC+AGG - tig0039907:19539-19558 Msa1458920:CDS 50.0%
!! GACGGGTTGTCACTCAAACA+AGG - tig0039907:19600-19619 Msa1458920:CDS 50.0%
CACTCAAACAAGGACTCCGT+TGG - tig0039907:19610-19629 Msa1458920:CDS 50.0%
ACCCCTTGCAGTACATGTTC+TGG - tig0039907:19689-19708 Msa1458920:CDS 50.0%
CCCAGAACATGTACTGCAAG+GGG + tig0039907:19693-19712 None:intergenic 50.0%
CCCCTTGCAGTACATGTTCT+GGG - tig0039907:19690-19709 Msa1458920:CDS 50.0%
CCCCAGAACATGTACTGCAA+GGG + tig0039907:19694-19713 None:intergenic 50.0%
CCCTTGCAGTACATGTTCTG+GGG - tig0039907:19691-19710 Msa1458920:CDS 50.0%
TCCCCAGAACATGTACTGCA+AGG + tig0039907:19695-19714 None:intergenic 50.0%
!! TGCAGTACATGTTCTGGGGA+TGG - tig0039907:19695-19714 Msa1458920:CDS 50.0%
!!! TCCGCTTTGTTTTCCTCACC+CGG + tig0039907:19721-19740 None:intergenic 50.0%
GGAAAGAAAGGTGGTTCTCC+TGG - tig0039907:19809-19828 Msa1458920:CDS 50.0%
TCTCGTTTAAGCACGGGATC+CGG + tig0039907:19863-19882 None:intergenic 50.0%
GGTTCCGACTGTAGATGGAA+TGG - tig0039907:19949-19968 Msa1458920:intron 50.0%
TCCGACTGTAGATGGAATGG+TGG - tig0039907:19952-19971 Msa1458920:intron 50.0%
ATCCTGGTTGTGTCCCAGAT+GGG + tig0039907:19988-20007 None:intergenic 50.0%
GAACTCTCGGAGTTGAGCAA+AGG - tig0039907:20136-20155 Msa1458920:intron 50.0%
TTTGGGGAGGCAGGGCTTAA+AGG - tig0039907:19209-19228 Msa1458920:CDS 55.0%
GGCAGGGCTTAAAGGTTCAC+CGG - tig0039907:19217-19236 Msa1458920:CDS 55.0%
GCAGGGCTTAAAGGTTCACC+GGG - tig0039907:19218-19237 Msa1458920:CDS 55.0%
!! AGGTTCACCGGGATTTGGTG+GGG - tig0039907:19229-19248 Msa1458920:CDS 55.0%
ACACATGTGGTGGTCAGGGA+CGG - tig0039907:19582-19601 Msa1458920:CDS 55.0%
TGCTCGTCTTGCAATGGGAC+TGG - tig0039907:19656-19675 Msa1458920:CDS 55.0%
!! GTACATGTTCTGGGGATGGC+CGG - tig0039907:19699-19718 Msa1458920:CDS 55.0%
!! TACATGTTCTGGGGATGGCC+GGG - tig0039907:19700-19719 Msa1458920:intron 55.0%
GCCGGGTGAGGAAAACAAAG+CGG - tig0039907:19717-19736 Msa1458920:intron 55.0%
ACGGCTACCAGAATCCACAC+CGG + tig0039907:19762-19781 None:intergenic 55.0%
CTCGTTTAAGCACGGGATCC+GGG + tig0039907:19862-19881 None:intergenic 55.0%
! ATCCCATCTGGGACACAACC+AGG - tig0039907:19983-20002 Msa1458920:CDS 55.0%
GATCCTGGTTGTGTCCCAGA+TGG + tig0039907:19989-20008 None:intergenic 55.0%
TTTGGGGAGGCAGGGCTTAA+AGG - tig0039907:19209-19228 Msa1458920:CDS 55.0%
GGCAGGGCTTAAAGGTTCAC+CGG - tig0039907:19217-19236 Msa1458920:CDS 55.0%
GCAGGGCTTAAAGGTTCACC+GGG - tig0039907:19218-19237 Msa1458920:CDS 55.0%
!! AGGTTCACCGGGATTTGGTG+GGG - tig0039907:19229-19248 Msa1458920:CDS 55.0%
ACACATGTGGTGGTCAGGGA+CGG - tig0039907:19582-19601 Msa1458920:CDS 55.0%
TGCTCGTCTTGCAATGGGAC+TGG - tig0039907:19656-19675 Msa1458920:CDS 55.0%
!! GTACATGTTCTGGGGATGGC+CGG - tig0039907:19699-19718 Msa1458920:CDS 55.0%
!! TACATGTTCTGGGGATGGCC+GGG - tig0039907:19700-19719 Msa1458920:intron 55.0%
GCCGGGTGAGGAAAACAAAG+CGG - tig0039907:19717-19736 Msa1458920:intron 55.0%
ACGGCTACCAGAATCCACAC+CGG + tig0039907:19762-19781 None:intergenic 55.0%
CTCGTTTAAGCACGGGATCC+GGG + tig0039907:19862-19881 None:intergenic 55.0%
! ATCCCATCTGGGACACAACC+AGG - tig0039907:19983-20002 Msa1458920:CDS 55.0%
GATCCTGGTTGTGTCCCAGA+TGG + tig0039907:19989-20008 None:intergenic 55.0%
!! GGTTCACCGGGATTTGGTGG+GGG - tig0039907:19230-19249 Msa1458920:CDS 60.0%
CACATGTGGTGGTCAGGGAC+GGG - tig0039907:19583-19602 Msa1458920:CDS 60.0%
TCTCAAGGTTCCAGCCGGTG+TGG - tig0039907:19745-19764 Msa1458920:intron 60.0%
GTTCCAGCCGGTGTGGATTC+TGG - tig0039907:19752-19771 Msa1458920:intron 60.0%
CTACCAGAATCCACACCGGC+TGG + tig0039907:19758-19777 None:intergenic 60.0%
AGCAAAGGCAAGACTGCCGC+CGG - tig0039907:20151-20170 Msa1458920:intron 60.0%
!! GGTTCACCGGGATTTGGTGG+GGG - tig0039907:19230-19249 Msa1458920:CDS 60.0%
CACATGTGGTGGTCAGGGAC+GGG - tig0039907:19583-19602 Msa1458920:CDS 60.0%
TCTCAAGGTTCCAGCCGGTG+TGG - tig0039907:19745-19764 Msa1458920:intron 60.0%
GTTCCAGCCGGTGTGGATTC+TGG - tig0039907:19752-19771 Msa1458920:intron 60.0%
CTACCAGAATCCACACCGGC+TGG + tig0039907:19758-19777 None:intergenic 60.0%
AGCAAAGGCAAGACTGCCGC+CGG - tig0039907:20151-20170 Msa1458920:intron 60.0%
!! ACCGGGATTTGGTGGGGGCA+TGG - tig0039907:19235-19254 Msa1458920:CDS 65.0%
CCCATGCCCCCACCAAATCC+CGG + tig0039907:19239-19258 None:intergenic 65.0%
!! CCGGGATTTGGTGGGGGCAT+GGG - tig0039907:19236-19255 Msa1458920:CDS 65.0%
!! CGGGATTTGGTGGGGGCATG+GGG - tig0039907:19237-19256 Msa1458920:CDS 65.0%
!! GGGATTTGGTGGGGGCATGG+GGG - tig0039907:19238-19257 Msa1458920:CDS 65.0%
!! ACCGGGATTTGGTGGGGGCA+TGG - tig0039907:19235-19254 Msa1458920:CDS 65.0%
CCCATGCCCCCACCAAATCC+CGG + tig0039907:19239-19258 None:intergenic 65.0%
!! CCGGGATTTGGTGGGGGCAT+GGG - tig0039907:19236-19255 Msa1458920:CDS 65.0%
!! CGGGATTTGGTGGGGGCATG+GGG - tig0039907:19237-19256 Msa1458920:CDS 65.0%
!! GGGATTTGGTGGGGGCATGG+GGG - tig0039907:19238-19257 Msa1458920:CDS 65.0%
!! GTTCTGGGGATGGCCGGGTG+AGG - tig0039907:19705-19724 Msa1458920:intron 70.0%
!! GTTCTGGGGATGGCCGGGTG+AGG - tig0039907:19705-19724 Msa1458920:intron 70.0%
Chromosome Type Strat End Strand Name
tig0039907 gene 18610 20458 18610 ID=Msa1458920;Name=Msa1458920
tig0039907 mRNA 18610 20458 18610 ID=Msa1458920-mRNA-1;Parent=Msa1458920;Name=Msa1458920-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|1|1|1|1|1|4|275|352
tig0039907 exon 18610 19718 18610 ID=Msa1458920-mRNA-1:exon:22015;Parent=Msa1458920-mRNA-1
tig0039907 exon 19809 19898 19809 ID=Msa1458920-mRNA-1:exon:22014;Parent=Msa1458920-mRNA-1
tig0039907 exon 19983 20031 19983 ID=Msa1458920-mRNA-1:exon:22013;Parent=Msa1458920-mRNA-1
tig0039907 exon 20373 20458 20373 ID=Msa1458920-mRNA-1:exon:22012;Parent=Msa1458920-mRNA-1
tig0039907 CDS 20373 20458 20373 ID=Msa1458920-mRNA-1:cds;Parent=Msa1458920-mRNA-1
tig0039907 CDS 19983 20031 19983 ID=Msa1458920-mRNA-1:cds;Parent=Msa1458920-mRNA-1
tig0039907 CDS 19809 19898 19809 ID=Msa1458920-mRNA-1:cds;Parent=Msa1458920-mRNA-1
tig0039907 CDS 18885 19718 18885 ID=Msa1458920-mRNA-1:cds;Parent=Msa1458920-mRNA-1
tig0039907 three_prime_UTR 18610 18884 18610 ID=Msa1458920-mRNA-1:three_prime_utr;Parent=Msa1458920-mRNA-1
Gene Sequence

>Msa1458920

GGTATCATTGCATTGTTAACTCTTTCTATTGTAAATGTTTCAGCTTACCGGAAGCTAGCCCGAAATTATCATCCAGATGTGAACAAAGATCCTGGTGCAGAAGAGAAATTTAAGGAAATCAGTAATGCGTACGAGGTCTTGTCAGATGATGAGAAACGGTCCATATATGACAAATTTGGGGAGGCAGGGCTTAAAGGTTCACCGGGATTTGGTGGGGGCATGGGGGATTTCAGCAACCCTTTTGATCTGTTTGAGTCGCTATTTGAGGGCATGGATGGTCGCAGCAGACAATCTTGGAATGGAGCAATGAATGGCGAAGATGAGTATTACAGTCTTGTTTTGAACTTTAAAGAAGCTGTTTTCGGAGTGGAAAAGGAGATAGAGATTAGGCGACTAGAGAAGTGTGGTACTTGCGATGGTTCAGGAGCTAAACCAGGGACTAAATCATCCAGATGTAACACATGTGGTGGTCAGGGACGGGTTGTCACTCAAACAAGGACTCCGTTGGGTATCTTTCAGCAGTCTATGACTTGCTCGTCTTGCAATGGGACTGGAGAAACTCGAACCCCTTGCAGTACATGTTCTGGGGATGGCCGGGTGAGGAAAACAAAGCGGATAAGTCTCAAGGTTCCAGCCGGTGTGGATTCTGGTAGCCGTTTAAGGGTCCGAAATGAAGGTAACTCTGGAAAGAAAGGTGGTTCTCCTGGTGACCTCTTTGTTGTTCTTGAAGTTATCCCGGATCCCGTGCTTAAACGAGAAGACACCAACATTTTATATTCTTGTAAAGTGTCTTATATTGATGCAATCTTGGGGACTACAATTAAGGTTCCGACTGTAGATGGAATGGTGGATTTGAAAATCCCATCTGGGACACAACCAGGATCAACACTTGTTATGGCAAAGAAAGGTGTTCCTCTGCTGAATAAGAAGAATATGAGGGGCGATCAATTCGTTCGAGTGCAAGTTGAGATTCCTAAAAAACTGAGCAGCGATGAGAGAAAACTGATTGAGGAACTCTCGGAGTTGAGCAAAGGCAAGACTGCCGCCGGTATGAGATGA

Protein sequence

>Msa1458920

GIIALLTLSIVNVSAYRKLARNYHPDVNKDPGAEEKFKEISNAYEVLSDDEKRSIYDKFGEAGLKGSPGFGGGMGDFSNPFDLFESLFEGMDGRSRQSWNGAMNGEDEYYSLVLNFKEAVFGVEKEIEIRRLEKCGTCDGSGAKPGTKSSRCNTCGGQGRVVTQTRTPLGIFQQSMTCSSCNGTGETRTPCSTCSGDGRVRKTKRISLKVPAGVDSGSRLRVRNEGNSGKKGGSPGDLFVVLEVIPDPVLKREDTNILYSCKVSYIDAILGTTIKVPTVDGMVDLKIPSGTQPGSTLVMAKKGVPLLNKKNMRGDQFVRVQVEIPKKLSSDERKLIEELSELSKGKTAAGMR*