Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0778790 | XP_024640360.1 | 90.847 | 295 | 18 | 1 | 18 | 312 | 18 | 303 | 3.37e-176 | 511 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0778790 | sp|F4IMH3|NOC4_ARATH | 50.166 | 301 | 142 | 3 | 12 | 312 | 8 | 300 | 6.15e-94 | 293 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0778790 | G7K1U1 | 89.492 | 295 | 18 | 1 | 18 | 312 | 18 | 299 | 1.96e-172 | 501 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0054440 | Msa0778790 | 0.809193 | 2.135415e-50 | -8.615850e-47 |
| Msa0076780 | Msa0778790 | 0.844166 | 8.947758e-59 | -8.615850e-47 |
| Msa0115130 | Msa0778790 | 0.821158 | 4.683724e-53 | -8.615850e-47 |
| Msa0605000 | Msa0778790 | 0.848874 | 4.641261e-60 | -8.615850e-47 |
| Msa0685140 | Msa0778790 | 0.839039 | 2.011354e-57 | -8.615850e-47 |
| Msa0778790 | Msa0802410 | 0.808906 | 2.459944e-50 | -8.615850e-47 |
| Msa0778790 | Msa0830540 | 0.804815 | 1.802389e-49 | -8.615850e-47 |
| Msa0778790 | Msa0859180 | 0.807850 | 4.133200e-50 | -8.615850e-47 |
| Msa0778790 | Msa0880040 | 0.813097 | 3.041915e-51 | -8.615850e-47 |
| Msa0778790 | Msa0925770 | 0.802652 | 5.067586e-49 | -8.615850e-47 |
| Msa0778790 | Msa0945440 | 0.836771 | 7.699242e-57 | -8.615850e-47 |
| Msa0778790 | Msa1219170 | 0.837253 | 5.796115e-57 | -8.615850e-47 |
| Msa0778790 | Msa1400580 | 0.807630 | 4.600941e-50 | -8.615850e-47 |
| Msa0127020 | Msa0778790 | 0.825773 | 3.904563e-54 | -8.615850e-47 |
| Msa0146770 | Msa0778790 | 0.827629 | 1.407890e-54 | -8.615850e-47 |
| Msa0169280 | Msa0778790 | 0.827946 | 1.181234e-54 | -8.615850e-47 |
| Msa0189300 | Msa0778790 | 0.813881 | 2.044938e-51 | -8.615850e-47 |
| Msa0231660 | Msa0778790 | 0.807927 | 3.978869e-50 | -8.615850e-47 |
| Msa0403500 | Msa0778790 | 0.805644 | 1.208202e-49 | -8.615850e-47 |
| Msa0309750 | Msa0778790 | 0.803041 | 4.212120e-49 | -8.615850e-47 |
| Msa0542090 | Msa0778790 | 0.828008 | 1.141550e-54 | -8.615850e-47 |
| Msa0542130 | Msa0778790 | 0.831100 | 2.021653e-55 | -8.615850e-47 |
| Msa0554290 | Msa0778790 | 0.844913 | 5.629775e-59 | -8.615850e-47 |
| Msa0581280 | Msa0778790 | 0.801287 | 9.666675e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0778790 | MtrunA17_Chr5g0434811 | 89.492 | 295 | 18 | 1 | 18 | 312 | 18 | 299 | 3.78e-176 | 501 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0778790 | AT2G17250.1 | 50.166 | 301 | 142 | 3 | 12 | 312 | 8 | 300 | 6.26e-95 | 293 |
Find 73 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACATTATTGTTACGTTTCT+TGG | 0.096967 | 5_2:-59614806 | None:intergenic |
| CCCTGTCATGGCAGGGTTCC+AGG | 0.176581 | 5_2:+59615609 | Msa0778790:intron |
| CTTCATCTTCTTCGCAATTC+TGG | 0.241906 | 5_2:-59615042 | None:intergenic |
| TTGGAGGGAAAAGATGTTTC+AGG | 0.244460 | 5_2:+59613671 | Msa0778790:CDS |
| AGAAAAGCTCACAAGAAATT+TGG | 0.246404 | 5_2:+59613652 | Msa0778790:CDS |
| AAGCTTGGATTGCGTATCTT+AGG | 0.300738 | 5_2:+59615078 | Msa0778790:CDS |
| TGAGCTTAATTGACTTTCAT+TGG | 0.332356 | 5_2:-59613860 | None:intergenic |
| TGAATGCGATGAAACTATTA+AGG | 0.339514 | 5_2:+59612781 | Msa0778790:CDS |
| ATGTGGTGAGGTGGAGAAGA+AGG | 0.362280 | 5_2:-59612575 | None:intergenic |
| TCTTCATTGCAGGTTCCATA+TGG | 0.381381 | 5_2:-59612424 | None:intergenic |
| TCAGTGATGCTGTGTTGTTT+TGG | 0.385668 | 5_2:-59612473 | None:intergenic |
| GTGGTCGTTGCGGTGGCGGA+AGG | 0.392652 | 5_2:-59612653 | None:intergenic |
| GGAGTTGAGGGAGGAGAGGT+AGG | 0.396790 | 5_2:-59612631 | None:intergenic |
| TGTGGTGAGGTGGAGAAGAA+GGG | 0.400686 | 5_2:-59612574 | None:intergenic |
| GAGTTTGTTAAGGTTGCTAA+TGG | 0.401292 | 5_2:+59612827 | Msa0778790:CDS |
| TTAGAAATGTGGAGTGTATC+AGG | 0.418848 | 5_2:+59614305 | Msa0778790:CDS |
| CCACGTGAGGTAAATGAATT+CGG | 0.420969 | 5_2:-59612702 | None:intergenic |
| AATGGATTTGACTTTGACCC+TGG | 0.423266 | 5_2:-59615627 | None:intergenic |
| TCTTAGGTTGCCACTTCCAT+TGG | 0.431065 | 5_2:+59615094 | Msa0778790:CDS |
| TACTTTGATGGAGTTTGTTA+AGG | 0.432512 | 5_2:+59612817 | Msa0778790:CDS |
| AGTTGTGCTTGATACTTTGA+TGG | 0.436883 | 5_2:+59612805 | Msa0778790:CDS |
| AGTTAAAATTTACTAAAGCT+TGG | 0.442017 | 5_2:+59615063 | Msa0778790:CDS |
| GCTGGTGGTCGTTGCGGTGG+CGG | 0.456173 | 5_2:-59612657 | None:intergenic |
| TGGTCGTTGCGGTGGCGGAA+GGG | 0.458326 | 5_2:-59612652 | None:intergenic |
| CGGTGGCGGAAGGGAGTTGA+GGG | 0.464726 | 5_2:-59612643 | None:intergenic |
| CCTGTCATGGCAGGGTTCCA+GGG | 0.483764 | 5_2:+59615610 | Msa0778790:intron |
| ACGACCACCAGCTCCTCCTC+TGG | 0.483819 | 5_2:+59612668 | Msa0778790:CDS |
| AGGGAGGAGAGGTAGGAAGA+AGG | 0.487182 | 5_2:-59612624 | None:intergenic |
| ATTTCAAGTATATTGATGTT+CGG | 0.489524 | 5_2:+59613065 | Msa0778790:CDS |
| TGAGAGAAGTTCTTGACCTA+GGG | 0.491411 | 5_2:-59612504 | None:intergenic |
| GAAGAGAGAGAATCGATTCG+AGG | 0.495834 | 5_2:-59612598 | None:intergenic |
| GTCAAAGTCAAATCCATTGT+TGG | 0.499793 | 5_2:+59615632 | Msa0778790:CDS |
| GTGGTGAGGTGGAGAAGAAG+GGG | 0.502021 | 5_2:-59612573 | None:intergenic |
| AGATGAATGTGAGAAGGAGA+GGG | 0.508416 | 5_2:-59612550 | None:intergenic |
| GTAAATGAATTCGGATTGAT+CGG | 0.509695 | 5_2:-59612693 | None:intergenic |
| GAGATGAATGTGAGAAGGAG+AGG | 0.513341 | 5_2:-59612551 | None:intergenic |
| GAAGGGAGTTGAGGGAGGAG+AGG | 0.515244 | 5_2:-59612635 | None:intergenic |
| ATCGGAACCAGAGGAGGAGC+TGG | 0.519725 | 5_2:-59612675 | None:intergenic |
| ATGAGAGAAGTTCTTGACCT+AGG | 0.524677 | 5_2:-59612505 | None:intergenic |
| AATAATAACTTACAATACTA+CGG | 0.526362 | 5_2:-59612886 | None:intergenic |
| TTTGTTAAGGTTGCTAATGG+TGG | 0.527835 | 5_2:+59612830 | Msa0778790:CDS |
| AAGGGGAGATGAATGTGAGA+AGG | 0.531048 | 5_2:-59612556 | None:intergenic |
| AGAGAATCGATTCGAGGATG+TGG | 0.533005 | 5_2:-59612592 | None:intergenic |
| TGAATGTGAGAAGGAGAGGG+AGG | 0.536408 | 5_2:-59612547 | None:intergenic |
| CCGAATTCATTTACCTCACG+TGG | 0.537243 | 5_2:+59612702 | Msa0778790:CDS |
| GGAGCTGGTGGTCGTTGCGG+TGG | 0.542377 | 5_2:-59612660 | None:intergenic |
| GATAAAACTGCAAGCGCAGA+TGG | 0.542599 | 5_2:+59613835 | Msa0778790:CDS |
| ATGAAAGTCAATTAAGCTCA+AGG | 0.545065 | 5_2:+59613863 | Msa0778790:CDS |
| GCGGTGGCGGAAGGGAGTTG+AGG | 0.546014 | 5_2:-59612644 | None:intergenic |
| ACCTCTTTGAACACATCCAA+TGG | 0.549353 | 5_2:-59615110 | None:intergenic |
| AAAGCTCACAAGAAATTTGG+AGG | 0.555352 | 5_2:+59613655 | Msa0778790:CDS |
| TTGAACACATCCAATGGAAG+TGG | 0.555934 | 5_2:-59615104 | None:intergenic |
| TCCATTGGATGTGTTCAAAG+AGG | 0.564996 | 5_2:+59615109 | Msa0778790:CDS |
| ATATGGTGTAGTACATATTG+TGG | 0.566500 | 5_2:-59614241 | None:intergenic |
| AGCACTTATCGATTGTCTTG+TGG | 0.571958 | 5_2:+59612754 | Msa0778790:CDS |
| AGGGAGGTTGTTGATGTGTG+AGG | 0.576196 | 5_2:-59612531 | None:intergenic |
| TGGCGGAAGGGAGTTGAGGG+AGG | 0.579360 | 5_2:-59612640 | None:intergenic |
| TAAAATGCTTTCTGTAGATG+TGG | 0.586404 | 5_2:+59614759 | Msa0778790:CDS |
| GGAGGAGCTGGTGGTCGTTG+CGG | 0.588937 | 5_2:-59612663 | None:intergenic |
| GATTCGAGGATGTGGTGAGG+TGG | 0.595441 | 5_2:-59612584 | None:intergenic |
| TTCGGATTGATCGGAACCAG+AGG | 0.606360 | 5_2:-59612684 | None:intergenic |
| ACTTATCGATTGTCTTGTGG+CGG | 0.611390 | 5_2:+59612757 | Msa0778790:CDS |
| TTCCTACTATAGACCAACAA+TGG | 0.614810 | 5_2:-59615645 | None:intergenic |
| CATATTGTGGATGATGCACT+CGG | 0.624795 | 5_2:-59614228 | None:intergenic |
| ATACATCTGATTTAGAAATG+TGG | 0.629117 | 5_2:+59614294 | Msa0778790:CDS |
| ATCACTGAAATCAAAACCCT+AGG | 0.631706 | 5_2:+59612488 | Msa0778790:CDS |
| AAGCTCACAAGAAATTTGGA+GGG | 0.638699 | 5_2:+59613656 | Msa0778790:CDS |
| GGAACCAGAGGAGGAGCTGG+TGG | 0.645029 | 5_2:-59612672 | None:intergenic |
| ATCGATTCGAGGATGTGGTG+AGG | 0.646651 | 5_2:-59612587 | None:intergenic |
| GAGGTTGTTGATGTGTGAGG+CGG | 0.647171 | 5_2:-59612528 | None:intergenic |
| GAAACTCGTCGAACTTCGAA+CGG | 0.658319 | 5_2:-59612727 | None:intergenic |
| ACTTCGAACGGAGCCACGTG+AGG | 0.663920 | 5_2:-59612715 | None:intergenic |
| GGATTGATCGGAACCAGAGG+AGG | 0.668743 | 5_2:-59612681 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATATTTCATAATCAAT+TGG | + | chr5_2:59614370-59614389 | Msa0778790:intron | 10.0% |
| !! | AATAATAACTTACAATACTA+CGG | - | chr5_2:59612889-59612908 | None:intergenic | 15.0% |
| !!! | ATTTGTTAGTTTGATTTTAT+TGG | + | chr5_2:59612980-59612999 | Msa0778790:intron | 15.0% |
| !!! | TGCATTTATATTTTGTAATT+TGG | + | chr5_2:59614624-59614643 | Msa0778790:intron | 15.0% |
| !!! | TTATTTTCAAAGATTTGTTT+AGG | - | chr5_2:59615394-59615413 | None:intergenic | 15.0% |
| !!! | ATTTCAAGTATATTGATGTT+CGG | + | chr5_2:59613065-59613084 | Msa0778790:CDS | 20.0% |
| !! | GAACTAAAAATACAAATTCT+TGG | - | chr5_2:59613178-59613197 | None:intergenic | 20.0% |
| !!! | TAAAAAGTGTTGTTAAATAG+AGG | + | chr5_2:59613407-59613426 | Msa0778790:intron | 20.0% |
| !! | CACAAAACAAAACTAAAATA+GGG | - | chr5_2:59613535-59613554 | None:intergenic | 20.0% |
| !!! | TCTTTTCAATTCCAAATATT+TGG | + | chr5_2:59613771-59613790 | Msa0778790:intron | 20.0% |
| !! | AATGAGAATAACCAAATATT+TGG | - | chr5_2:59613785-59613804 | None:intergenic | 20.0% |
| !! | CATAAAATATAGAACTCAAA+AGG | - | chr5_2:59614411-59614430 | None:intergenic | 20.0% |
| !!! | CATTTTATGATCATTTTCTA+TGG | - | chr5_2:59614746-59614765 | None:intergenic | 20.0% |
| !! | AGTTAAAATTTACTAAAGCT+TGG | + | chr5_2:59615063-59615082 | Msa0778790:CDS | 20.0% |
| !! | TTTAGTAATATATGACACTA+TGG | + | chr5_2:59615229-59615248 | Msa0778790:intron | 20.0% |
| ! | CTTAAGAAAAAAACACCATA+TGG | + | chr5_2:59612409-59612428 | Msa0778790:exon | 25.0% |
| ! | GCACAAAACAAAACTAAAAT+AGG | - | chr5_2:59613536-59613555 | None:intergenic | 25.0% |
| ! | TCATCTTCTTCTCTTTATAA+AGG | - | chr5_2:59613933-59613952 | None:intergenic | 25.0% |
| ! | TTATAGCATATTGTATGACA+TGG | - | chr5_2:59614020-59614039 | None:intergenic | 25.0% |
| !! | ATACATCTAGTTTCAAAACT+AGG | - | chr5_2:59614145-59614164 | None:intergenic | 25.0% |
| ! | ATACATCTGATTTAGAAATG+TGG | + | chr5_2:59614294-59614313 | Msa0778790:CDS | 25.0% |
| ! | TACATTATTGTTACGTTTCT+TGG | - | chr5_2:59614809-59614828 | None:intergenic | 25.0% |
| ! | GAAAATTACAATGTAATCCA+AGG | - | chr5_2:59614895-59614914 | None:intergenic | 25.0% |
| !! | ATGTGTTTGAAATTTCAGTA+TGG | + | chr5_2:59615146-59615165 | Msa0778790:intron | 25.0% |
| ! | CATCAATTTCCAGAATATAA+TGG | - | chr5_2:59615175-59615194 | None:intergenic | 25.0% |
| ! | TGTATATCTAAGTGTTTGTT+TGG | + | chr5_2:59615304-59615323 | Msa0778790:intron | 25.0% |
| ! | TAGGAAATGAAATGAAAACA+AGG | - | chr5_2:59615375-59615394 | None:intergenic | 25.0% |
| !! | TTGTCATTAAAAGTGTAAAC+AGG | + | chr5_2:59615442-59615461 | Msa0778790:intron | 25.0% |
| !! | AGAGTCTTGATATAACATTT+TGG | + | chr5_2:59615546-59615565 | Msa0778790:intron | 25.0% |
| GTAAATGAATTCGGATTGAT+CGG | - | chr5_2:59612696-59612715 | None:intergenic | 30.0% | |
| TGAATGCGATGAAACTATTA+AGG | + | chr5_2:59612781-59612800 | Msa0778790:CDS | 30.0% | |
| !! | TACTTTGATGGAGTTTGTTA+AGG | + | chr5_2:59612817-59612836 | Msa0778790:CDS | 30.0% |
| TCGTCAATGTTGTTAAATAG+CGG | + | chr5_2:59613300-59613319 | Msa0778790:intron | 30.0% | |
| AAATAGCATATCACAGATAG+CGG | - | chr5_2:59613380-59613399 | None:intergenic | 30.0% | |
| ! | AATTTCTTGTGAGCTTTTCT+AGG | - | chr5_2:59613652-59613671 | None:intergenic | 30.0% |
| AGAAAAGCTCACAAGAAATT+TGG | + | chr5_2:59613652-59613671 | Msa0778790:CDS | 30.0% | |
| AGATTAAGAAAAGCAAGCTA+AGG | - | chr5_2:59613707-59613726 | None:intergenic | 30.0% | |
| ! | TGAGCTTAATTGACTTTCAT+TGG | - | chr5_2:59613863-59613882 | None:intergenic | 30.0% |
| ATGAAAGTCAATTAAGCTCA+AGG | + | chr5_2:59613863-59613882 | Msa0778790:CDS | 30.0% | |
| GCAAGAATAAAATTAACCAC+TGG | - | chr5_2:59613904-59613923 | None:intergenic | 30.0% | |
| ! | AAATCATTTAAGACCAGCTA+TGG | - | chr5_2:59613956-59613975 | None:intergenic | 30.0% |
| ! | ACATCTCTAATTTTTCTGCT+AGG | + | chr5_2:59614109-59614128 | Msa0778790:intron | 30.0% |
| ATATGGTGTAGTACATATTG+TGG | - | chr5_2:59614244-59614263 | None:intergenic | 30.0% | |
| !!! | TATCGTCTGATTTTTCAAGA+GGG | - | chr5_2:59614277-59614296 | None:intergenic | 30.0% |
| !! | GATCAAGTAAGAAGTATCTT+TGG | + | chr5_2:59614499-59614518 | Msa0778790:intron | 30.0% |
| TTTAAGTGGGATCAGTTATA+TGG | - | chr5_2:59614560-59614579 | None:intergenic | 30.0% | |
| ! | AACCAAAAGCTTGTTTAAGT+GGG | - | chr5_2:59614573-59614592 | None:intergenic | 30.0% |
| ! | TAACCAAAAGCTTGTTTAAG+TGG | - | chr5_2:59614574-59614593 | None:intergenic | 30.0% |
| !! | TGGTTATTCTTGTTGTTCTA+AGG | + | chr5_2:59614588-59614607 | Msa0778790:intron | 30.0% |
| !! | CTTGTTGTTCTAAGGAAAAA+TGG | + | chr5_2:59614596-59614615 | Msa0778790:intron | 30.0% |
| AACCAAAAGCCTATTTAAGT+GGG | - | chr5_2:59614661-59614680 | None:intergenic | 30.0% | |
| TAACCAAAAGCCTATTTAAG+TGG | - | chr5_2:59614662-59614681 | None:intergenic | 30.0% | |
| !! | TGGTTATTCTTGTTGTTCTA+AGG | + | chr5_2:59614588-59614607 | Msa0778790:intron | 30.0% |
| TAAAATGCTTTCTGTAGATG+TGG | + | chr5_2:59614759-59614778 | Msa0778790:CDS | 30.0% | |
| ATAAAAGGTCCTCATTAATG+GGG | - | chr5_2:59614872-59614891 | None:intergenic | 30.0% | |
| GATAAAAGGTCCTCATTAAT+GGG | - | chr5_2:59614873-59614892 | None:intergenic | 30.0% | |
| CAATGTAATCCAAGGATAAA+AGG | - | chr5_2:59614887-59614906 | None:intergenic | 30.0% | |
| TATGCAGAACAATGATGTAA+TGG | - | chr5_2:59615006-59615025 | None:intergenic | 30.0% | |
| ATCTAAGTGTTTGTTTGGTT+TGG | + | chr5_2:59615309-59615328 | Msa0778790:intron | 30.0% | |
| ! | TCTAAGTGTTTGTTTGGTTT+GGG | + | chr5_2:59615310-59615329 | Msa0778790:intron | 30.0% |
| GAAATGAAATGAAAACAAGG+TGG | - | chr5_2:59615372-59615391 | None:intergenic | 30.0% | |
| GAAATCAAGTGAAATCAATG+TGG | + | chr5_2:59615414-59615433 | Msa0778790:intron | 30.0% | |
| TGTACATACGTGTATATATG+TGG | + | chr5_2:59615512-59615531 | Msa0778790:intron | 30.0% | |
| CAAAAAGATATCCACATTTC+AGG | - | chr5_2:59615579-59615598 | None:intergenic | 30.0% | |
| ! | TTCTTCGTTTTCTTCATTGC+AGG | - | chr5_2:59612437-59612456 | None:intergenic | 35.0% |
| ATCACTGAAATCAAAACCCT+AGG | + | chr5_2:59612488-59612507 | Msa0778790:CDS | 35.0% | |
| AGTTGTGCTTGATACTTTGA+TGG | + | chr5_2:59612805-59612824 | Msa0778790:CDS | 35.0% | |
| !! | GAGTTTGTTAAGGTTGCTAA+TGG | + | chr5_2:59612827-59612846 | Msa0778790:CDS | 35.0% |
| TTTGTTAAGGTTGCTAATGG+TGG | + | chr5_2:59612830-59612849 | Msa0778790:CDS | 35.0% | |
| CTAGCGTCTAGAAAAATCAA+AGG | - | chr5_2:59613107-59613126 | None:intergenic | 35.0% | |
| !!! | TTTTTTGCTTAGCGCCTTTA+TGG | + | chr5_2:59613249-59613268 | Msa0778790:intron | 35.0% |
| TAAGAACTTCCCTTCCATAA+AGG | - | chr5_2:59613266-59613285 | None:intergenic | 35.0% | |
| TTTATGGAAGGGAAGTTCTT+AGG | + | chr5_2:59613265-59613284 | Msa0778790:intron | 35.0% | |
| TTAGTAATGCTATAGCGTAG+CGG | + | chr5_2:59613330-59613349 | Msa0778790:intron | 35.0% | |
| CACTATAGTACTGTTGCATA+GGG | + | chr5_2:59613430-59613449 | Msa0778790:intron | 35.0% | |
| ACTATAGTACTGTTGCATAG+GGG | + | chr5_2:59613431-59613450 | Msa0778790:intron | 35.0% | |
| AAAGCTCACAAGAAATTTGG+AGG | + | chr5_2:59613655-59613674 | Msa0778790:CDS | 35.0% | |
| AAGCTCACAAGAAATTTGGA+GGG | + | chr5_2:59613656-59613675 | Msa0778790:CDS | 35.0% | |
| !!! | ATCGTCTGATTTTTCAAGAG+GGG | - | chr5_2:59614276-59614295 | None:intergenic | 35.0% |
| !!! | GTATCGTCTGATTTTTCAAG+AGG | - | chr5_2:59614278-59614297 | None:intergenic | 35.0% |
| TTAGAAATGTGGAGTGTATC+AGG | + | chr5_2:59614305-59614324 | Msa0778790:CDS | 35.0% | |
| ! | GCTATAAAGCTGTCACTTAT+TGG | - | chr5_2:59614527-59614546 | None:intergenic | 35.0% |
| ! | ATCCCACTTAAACAAGCTTT+TGG | + | chr5_2:59614568-59614587 | Msa0778790:intron | 35.0% |
| ATAGCTGATCCCACTTAAAT+AGG | + | chr5_2:59614649-59614668 | Msa0778790:intron | 35.0% | |
| ! | ATCCCACTTAAATAGGCTTT+TGG | + | chr5_2:59614656-59614675 | Msa0778790:intron | 35.0% |
| TCATTAATGGGGAAAAAAGG+GGG | - | chr5_2:59614861-59614880 | None:intergenic | 35.0% | |
| CTCATTAATGGGGAAAAAAG+GGG | - | chr5_2:59614862-59614881 | None:intergenic | 35.0% | |
| CCTCATTAATGGGGAAAAAA+GGG | - | chr5_2:59614863-59614882 | None:intergenic | 35.0% | |
| TCCTCATTAATGGGGAAAAA+AGG | - | chr5_2:59614864-59614883 | None:intergenic | 35.0% | |
| GGATAAAAGGTCCTCATTAA+TGG | - | chr5_2:59614874-59614893 | None:intergenic | 35.0% | |
| ! | TAATGAGGACCTTTTATCCT+TGG | + | chr5_2:59614875-59614894 | Msa0778790:intron | 35.0% |
| TACATCATTGTTCTGCATAC+AGG | + | chr5_2:59615007-59615026 | Msa0778790:intron | 35.0% | |
| GTATGGTTGCCATTATATTC+TGG | + | chr5_2:59615163-59615182 | Msa0778790:intron | 35.0% | |
| GTGTAAACAGGAATGAATGT+AGG | + | chr5_2:59615454-59615473 | Msa0778790:intron | 35.0% | |
| TATGTACAGTTGTATTCAGG+TGG | - | chr5_2:59615500-59615519 | None:intergenic | 35.0% | |
| ACGTATGTACAGTTGTATTC+AGG | - | chr5_2:59615503-59615522 | None:intergenic | 35.0% | |
| GTCAAAGTCAAATCCATTGT+TGG | + | chr5_2:59615632-59615651 | Msa0778790:CDS | 35.0% | |
| TCTTCATTGCAGGTTCCATA+TGG | - | chr5_2:59612427-59612446 | None:intergenic | 40.0% | |
| !!! | TCAGTGATGCTGTGTTGTTT+TGG | - | chr5_2:59612476-59612495 | None:intergenic | 40.0% |
| TGAGAGAAGTTCTTGACCTA+GGG | - | chr5_2:59612507-59612526 | None:intergenic | 40.0% | |
| ATGAGAGAAGTTCTTGACCT+AGG | - | chr5_2:59612508-59612527 | None:intergenic | 40.0% | |
| AGATGAATGTGAGAAGGAGA+GGG | - | chr5_2:59612553-59612572 | None:intergenic | 40.0% | |
| CCACGTGAGGTAAATGAATT+CGG | - | chr5_2:59612705-59612724 | None:intergenic | 40.0% | |
| ! | AGCACTTATCGATTGTCTTG+TGG | + | chr5_2:59612754-59612773 | Msa0778790:CDS | 40.0% |
| ! | ACTTATCGATTGTCTTGTGG+CGG | + | chr5_2:59612757-59612776 | Msa0778790:CDS | 40.0% |
| GCACTATAGTACTGTTGCAT+AGG | + | chr5_2:59613429-59613448 | Msa0778790:intron | 40.0% | |
| TCATGAATCGTGTCATATGC+AGG | + | chr5_2:59613571-59613590 | Msa0778790:intron | 40.0% | |
| CATGAATCGTGTCATATGCA+GGG | + | chr5_2:59613572-59613591 | Msa0778790:intron | 40.0% | |
| TTGGAGGGAAAAGATGTTTC+AGG | + | chr5_2:59613671-59613690 | Msa0778790:CDS | 40.0% | |
| CTAGTTTCAAAACTAGGACC+AGG | - | chr5_2:59614139-59614158 | None:intergenic | 40.0% | |
| CATATTGTGGATGATGCACT+CGG | - | chr5_2:59614231-59614250 | None:intergenic | 40.0% | |
| AAGAGGGGGAATATGTGATA+TGG | - | chr5_2:59614261-59614280 | None:intergenic | 40.0% | |
| !!! | TCGTCTGATTTTTCAAGAGG+GGG | - | chr5_2:59614275-59614294 | None:intergenic | 40.0% |
| !!! | CCCTTTTTTCCCCATTAATG+AGG | + | chr5_2:59614860-59614879 | Msa0778790:intron | 40.0% |
| CTTCATCTTCTTCGCAATTC+TGG | - | chr5_2:59615045-59615064 | None:intergenic | 40.0% | |
| AAGCTTGGATTGCGTATCTT+AGG | + | chr5_2:59615078-59615097 | Msa0778790:CDS | 40.0% | |
| TTGAACACATCCAATGGAAG+TGG | - | chr5_2:59615107-59615126 | None:intergenic | 40.0% | |
| TCCATTGGATGTGTTCAAAG+AGG | + | chr5_2:59615109-59615128 | Msa0778790:CDS | 40.0% | |
| ACCTCTTTGAACACATCCAA+TGG | - | chr5_2:59615113-59615132 | None:intergenic | 40.0% | |
| ! | TTGGTAGTAGTCCTGAAATG+TGG | + | chr5_2:59615565-59615584 | Msa0778790:intron | 40.0% |
| ! | AATGGATTTGACTTTGACCC+TGG | - | chr5_2:59615630-59615649 | None:intergenic | 40.0% |
| GAGATGAATGTGAGAAGGAG+AGG | - | chr5_2:59612554-59612573 | None:intergenic | 45.0% | |
| AAGGGGAGATGAATGTGAGA+AGG | - | chr5_2:59612559-59612578 | None:intergenic | 45.0% | |
| !! | AGAGAATCGATTCGAGGATG+TGG | - | chr5_2:59612595-59612614 | None:intergenic | 45.0% |
| !! | GAAGAGAGAGAATCGATTCG+AGG | - | chr5_2:59612601-59612620 | None:intergenic | 45.0% |
| CCGAATTCATTTACCTCACG+TGG | + | chr5_2:59612702-59612721 | Msa0778790:CDS | 45.0% | |
| GAAACTCGTCGAACTTCGAA+CGG | - | chr5_2:59612730-59612749 | None:intergenic | 45.0% | |
| ATGACAATGTACAGCGTGTG+TGG | + | chr5_2:59613226-59613245 | Msa0778790:intron | 45.0% | |
| TTGCTTAGCGCCTTTATGGA+AGG | + | chr5_2:59613253-59613272 | Msa0778790:intron | 45.0% | |
| TGCTTAGCGCCTTTATGGAA+GGG | + | chr5_2:59613254-59613273 | Msa0778790:intron | 45.0% | |
| CAATCTGCGTTTGACAACAG+TGG | + | chr5_2:59613479-59613498 | Msa0778790:intron | 45.0% | |
| ! | ACAGTGGTCAGCGTGTTATT+TGG | + | chr5_2:59613495-59613514 | Msa0778790:intron | 45.0% |
| GATAAAACTGCAAGCGCAGA+TGG | + | chr5_2:59613835-59613854 | Msa0778790:CDS | 45.0% | |
| GTTAGTAAGACTCTAGCCAG+TGG | + | chr5_2:59613885-59613904 | Msa0778790:intron | 45.0% | |
| GAGAAGAAGATGACCATAGC+TGG | + | chr5_2:59613940-59613959 | Msa0778790:intron | 45.0% | |
| ! | ACATCACCTCCTTTTCTGCT+AGG | + | chr5_2:59614082-59614101 | Msa0778790:intron | 45.0% |
| GATGTTCTGCCTAGCAGAAA+AGG | - | chr5_2:59614094-59614113 | None:intergenic | 45.0% | |
| ! | ATTTTTCTGCTAGGCAGACC+TGG | + | chr5_2:59614118-59614137 | Msa0778790:intron | 45.0% |
| GGGAGCAACATTAACGAGTA+CGG | - | chr5_2:59614841-59614860 | None:intergenic | 45.0% | |
| ! | TCTTAGGTTGCCACTTCCAT+TGG | + | chr5_2:59615094-59615113 | Msa0778790:CDS | 45.0% |
| TGCTATTAAAGCCCCTGTCA+TGG | + | chr5_2:59615597-59615616 | Msa0778790:intron | 45.0% | |
| GAGGTTGTTGATGTGTGAGG+CGG | - | chr5_2:59612531-59612550 | None:intergenic | 50.0% | |
| AGGGAGGTTGTTGATGTGTG+AGG | - | chr5_2:59612534-59612553 | None:intergenic | 50.0% | |
| TGAATGTGAGAAGGAGAGGG+AGG | - | chr5_2:59612550-59612569 | None:intergenic | 50.0% | |
| TGTGGTGAGGTGGAGAAGAA+GGG | - | chr5_2:59612577-59612596 | None:intergenic | 50.0% | |
| ATGTGGTGAGGTGGAGAAGA+AGG | - | chr5_2:59612578-59612597 | None:intergenic | 50.0% | |
| !! | ATCGATTCGAGGATGTGGTG+AGG | - | chr5_2:59612590-59612609 | None:intergenic | 50.0% |
| TTCGGATTGATCGGAACCAG+AGG | - | chr5_2:59612687-59612706 | None:intergenic | 50.0% | |
| !! | GTGGTCAGCGTGTTATTTGG+TGG | + | chr5_2:59613498-59613517 | Msa0778790:intron | 50.0% |
| GTTCTGCCTAGCAGAAAAGG+AGG | - | chr5_2:59614091-59614110 | None:intergenic | 50.0% | |
| ATTAAAGCCCCTGTCATGGC+AGG | + | chr5_2:59615601-59615620 | Msa0778790:intron | 50.0% | |
| TTAAAGCCCCTGTCATGGCA+GGG | + | chr5_2:59615602-59615621 | Msa0778790:intron | 50.0% | |
| GTGGTGAGGTGGAGAAGAAG+GGG | - | chr5_2:59612576-59612595 | None:intergenic | 55.0% | |
| GATTCGAGGATGTGGTGAGG+TGG | - | chr5_2:59612587-59612606 | None:intergenic | 55.0% | |
| AGGGAGGAGAGGTAGGAAGA+AGG | - | chr5_2:59612627-59612646 | None:intergenic | 55.0% | |
| GGATTGATCGGAACCAGAGG+AGG | - | chr5_2:59612684-59612703 | None:intergenic | 55.0% | |
| GGAGTTGAGGGAGGAGAGGT+AGG | - | chr5_2:59612634-59612653 | None:intergenic | 60.0% | |
| GAAGGGAGTTGAGGGAGGAG+AGG | - | chr5_2:59612638-59612657 | None:intergenic | 60.0% | |
| ATCGGAACCAGAGGAGGAGC+TGG | - | chr5_2:59612678-59612697 | None:intergenic | 60.0% | |
| ACTTCGAACGGAGCCACGTG+AGG | - | chr5_2:59612718-59612737 | None:intergenic | 60.0% | |
| CTGGAACCCTGCCATGACAG+GGG | - | chr5_2:59615611-59615630 | None:intergenic | 60.0% | |
| CCTGGAACCCTGCCATGACA+GGG | - | chr5_2:59615612-59615631 | None:intergenic | 60.0% | |
| CCTGTCATGGCAGGGTTCCA+GGG | + | chr5_2:59615610-59615629 | Msa0778790:intron | 60.0% | |
| TGGCGGAAGGGAGTTGAGGG+AGG | - | chr5_2:59612643-59612662 | None:intergenic | 65.0% | |
| !! | CGGTGGCGGAAGGGAGTTGA+GGG | - | chr5_2:59612646-59612665 | None:intergenic | 65.0% |
| !! | TGGTCGTTGCGGTGGCGGAA+GGG | - | chr5_2:59612655-59612674 | None:intergenic | 65.0% |
| GGAGGAGCTGGTGGTCGTTG+CGG | - | chr5_2:59612666-59612685 | None:intergenic | 65.0% | |
| ACGACCACCAGCTCCTCCTC+TGG | + | chr5_2:59612668-59612687 | Msa0778790:CDS | 65.0% | |
| GGAACCAGAGGAGGAGCTGG+TGG | - | chr5_2:59612675-59612694 | None:intergenic | 65.0% | |
| CCCTGTCATGGCAGGGTTCC+AGG | + | chr5_2:59615609-59615628 | Msa0778790:intron | 65.0% | |
| CCCTGGAACCCTGCCATGAC+AGG | - | chr5_2:59615613-59615632 | None:intergenic | 65.0% | |
| !! | GCGGTGGCGGAAGGGAGTTG+AGG | - | chr5_2:59612647-59612666 | None:intergenic | 70.0% |
| !! | GTGGTCGTTGCGGTGGCGGA+AGG | - | chr5_2:59612656-59612675 | None:intergenic | 70.0% |
| GCTGGTGGTCGTTGCGGTGG+CGG | - | chr5_2:59612660-59612679 | None:intergenic | 70.0% | |
| GGAGCTGGTGGTCGTTGCGG+TGG | - | chr5_2:59612663-59612682 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 59612402 | 59615661 | 59612402 | ID=Msa0778790;Name=Msa0778790 |
| chr5_2 | mRNA | 59612402 | 59615661 | 59612402 | ID=Msa0778790-mRNA-1;Parent=Msa0778790;Name=Msa0778790-mRNA-1;_AED=0.11;_eAED=0.11;_QI=26|0.57|0.62|0.62|1|1|8|0|324 |
| chr5_2 | exon | 59612402 | 59612895 | 59612402 | ID=Msa0778790-mRNA-1:exon:17499;Parent=Msa0778790-mRNA-1 |
| chr5_2 | exon | 59613013 | 59613086 | 59613013 | ID=Msa0778790-mRNA-1:exon:17500;Parent=Msa0778790-mRNA-1 |
| chr5_2 | exon | 59613631 | 59613692 | 59613631 | ID=Msa0778790-mRNA-1:exon:17501;Parent=Msa0778790-mRNA-1 |
| chr5_2 | exon | 59613833 | 59613884 | 59613833 | ID=Msa0778790-mRNA-1:exon:17502;Parent=Msa0778790-mRNA-1 |
| chr5_2 | exon | 59614226 | 59614326 | 59614226 | ID=Msa0778790-mRNA-1:exon:17503;Parent=Msa0778790-mRNA-1 |
| chr5_2 | exon | 59614749 | 59614825 | 59614749 | ID=Msa0778790-mRNA-1:exon:17504;Parent=Msa0778790-mRNA-1 |
| chr5_2 | exon | 59615029 | 59615130 | 59615029 | ID=Msa0778790-mRNA-1:exon:17505;Parent=Msa0778790-mRNA-1 |
| chr5_2 | exon | 59615623 | 59615661 | 59615623 | ID=Msa0778790-mRNA-1:exon:17506;Parent=Msa0778790-mRNA-1 |
| chr5_2 | five_prime_UTR | 59612402 | 59612427 | 59612402 | ID=Msa0778790-mRNA-1:five_prime_utr;Parent=Msa0778790-mRNA-1 |
| chr5_2 | CDS | 59612428 | 59612895 | 59612428 | ID=Msa0778790-mRNA-1:cds;Parent=Msa0778790-mRNA-1 |
| chr5_2 | CDS | 59613013 | 59613086 | 59613013 | ID=Msa0778790-mRNA-1:cds;Parent=Msa0778790-mRNA-1 |
| chr5_2 | CDS | 59613631 | 59613692 | 59613631 | ID=Msa0778790-mRNA-1:cds;Parent=Msa0778790-mRNA-1 |
| chr5_2 | CDS | 59613833 | 59613884 | 59613833 | ID=Msa0778790-mRNA-1:cds;Parent=Msa0778790-mRNA-1 |
| chr5_2 | CDS | 59614226 | 59614326 | 59614226 | ID=Msa0778790-mRNA-1:cds;Parent=Msa0778790-mRNA-1 |
| chr5_2 | CDS | 59614749 | 59614825 | 59614749 | ID=Msa0778790-mRNA-1:cds;Parent=Msa0778790-mRNA-1 |
| chr5_2 | CDS | 59615029 | 59615130 | 59615029 | ID=Msa0778790-mRNA-1:cds;Parent=Msa0778790-mRNA-1 |
| chr5_2 | CDS | 59615623 | 59615661 | 59615623 | ID=Msa0778790-mRNA-1:cds;Parent=Msa0778790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
