Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0783640 | sp|O22892|NOP53_ARATH | 54.217 | 249 | 105 | 5 | 1 | 248 | 1 | 241 | 9.82e-71 | 226 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0783640 | G7K7B9 | 99.237 | 262 | 2 | 0 | 1 | 262 | 1 | 262 | 0.0 | 523 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0076780 | Msa0783640 | 0.806243 | 9.041683e-50 | -8.615850e-47 |
| Msa0605000 | Msa0783640 | 0.829636 | 4.607429e-55 | -8.615850e-47 |
| Msa0646130 | Msa0783640 | 0.832625 | 8.494021e-56 | -8.615850e-47 |
| Msa0656580 | Msa0783640 | 0.833102 | 6.467148e-56 | -8.615850e-47 |
| Msa0685140 | Msa0783640 | 0.800369 | 1.488591e-48 | -8.615850e-47 |
| Msa0691290 | Msa0783640 | 0.826990 | 2.002566e-54 | -8.615850e-47 |
| Msa0783640 | Msa0802410 | 0.811813 | 5.803725e-51 | -8.615850e-47 |
| Msa0783640 | Msa0819060 | 0.802458 | 5.558143e-49 | -8.615850e-47 |
| Msa0783640 | Msa0859180 | 0.819494 | 1.127809e-52 | -8.615850e-47 |
| Msa0783640 | Msa0880040 | 0.843432 | 1.406797e-58 | -8.615850e-47 |
| Msa0783640 | Msa0945440 | 0.810104 | 1.360794e-50 | -8.615850e-47 |
| Msa0783640 | Msa1001350 | 0.802899 | 4.506891e-49 | -8.615850e-47 |
| Msa0783640 | Msa1133400 | 0.812846 | 3.452657e-51 | -8.615850e-47 |
| Msa0783640 | Msa1355700 | 0.847231 | 1.318101e-59 | -8.615850e-47 |
| Msa0783640 | Msa1385810 | 0.800394 | 1.471285e-48 | -8.615850e-47 |
| Msa0783640 | Msa1409260 | 0.803186 | 3.930748e-49 | -8.615850e-47 |
| Msa0127040 | Msa0783640 | 0.812949 | 3.277377e-51 | -8.615850e-47 |
| Msa0133630 | Msa0783640 | 0.814364 | 1.599878e-51 | -8.615850e-47 |
| Msa0373860 | Msa0783640 | 0.820621 | 6.227149e-53 | -8.615850e-47 |
| Msa0511490 | Msa0783640 | 0.817276 | 3.586745e-52 | -8.615850e-47 |
| Msa0554290 | Msa0783640 | 0.828184 | 1.034922e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0783640 | MtrunA17_Chr5g0437971 | 99.237 | 262 | 2 | 0 | 1 | 262 | 1 | 262 | 0.0 | 523 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0783640 | AT2G40430.1 | 54.217 | 249 | 105 | 5 | 1 | 248 | 1 | 241 | 9.98e-72 | 226 |
| Msa0783640 | AT2G40430.2 | 54.217 | 249 | 105 | 5 | 1 | 248 | 1 | 241 | 1.27e-71 | 226 |
| Msa0783640 | AT2G40430.3 | 73.563 | 87 | 23 | 0 | 1 | 87 | 1 | 87 | 4.20e-36 | 130 |
Find 44 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACAAAAGATGCTCTTTC+TGG | 0.195441 | 5_2:+67787993 | Msa0783640:CDS |
| AAAAGTGTAGTGTTAGAAAA+TGG | 0.212982 | 5_2:+67787884 | Msa0783640:exon |
| ACAGTTAAAGGCACCGGTTC+AGG | 0.249592 | 5_2:-67790092 | None:intergenic |
| TTCATTGGCGACTAAACTTT+TGG | 0.280238 | 5_2:-67789373 | None:intergenic |
| TAAAGTCTACAGAAATGAAT+TGG | 0.292665 | 5_2:+67790067 | Msa0783640:CDS |
| TCTCCAGCAGGAACAGTTAA+AGG | 0.308159 | 5_2:-67790104 | None:intergenic |
| AAAGTGTAGTGTTAGAAAAT+GGG | 0.342504 | 5_2:+67787885 | Msa0783640:exon |
| AGGCAACAAGAAAGTGAAAA+AGG | 0.370426 | 5_2:+67789718 | Msa0783640:CDS |
| TTTGATATGTGGGGTGATAA+AGG | 0.381349 | 5_2:+67789598 | Msa0783640:CDS |
| TTGAGTTGAATAAGAGAATT+CGG | 0.399925 | 5_2:+67790826 | Msa0783640:CDS |
| AAATGAATTGGGCCCTGAAC+CGG | 0.418925 | 5_2:+67790079 | Msa0783640:CDS |
| ATTCTGACGTATTTGATATG+TGG | 0.431247 | 5_2:+67789587 | Msa0783640:CDS |
| AAGGCACTGGCTTAACAAAC+TGG | 0.432795 | 5_2:-67789308 | None:intergenic |
| CGCCAATGAAAATATTCATA+AGG | 0.466327 | 5_2:+67789386 | Msa0783640:CDS |
| GGAGGATCAACCTCGACAGC+TGG | 0.470903 | 5_2:-67789874 | None:intergenic |
| AAAGTCTACAGAAATGAATT+GGG | 0.481927 | 5_2:+67790068 | Msa0783640:CDS |
| TCAGAAATAGCTTCTCCAGC+AGG | 0.486553 | 5_2:-67790116 | None:intergenic |
| TCCCACACATGAAAGTCATC+AGG | 0.503208 | 5_2:+67789912 | Msa0783640:CDS |
| CAGTTAAAGGCACCGGTTCA+GGG | 0.505603 | 5_2:-67790091 | None:intergenic |
| GGAAGAAATCGAAAAGTTCA+AGG | 0.508630 | 5_2:+67787907 | Msa0783640:CDS |
| GTGCCTTTAACTGTTCCTGC+TGG | 0.514168 | 5_2:+67790101 | Msa0783640:CDS |
| TTCTGACGTATTTGATATGT+GGG | 0.515220 | 5_2:+67789588 | Msa0783640:CDS |
| AATCGAAAAGTTCAAGGAAG+GGG | 0.536801 | 5_2:+67787913 | Msa0783640:CDS |
| TGTTTCTTTAGAGTAGATGA+AGG | 0.544003 | 5_2:-67789327 | None:intergenic |
| TTTAGAGTAGATGAAGGCAC+TGG | 0.552068 | 5_2:-67789321 | None:intergenic |
| ACCTGATGACTTTCATGTGT+GGG | 0.552896 | 5_2:-67789913 | None:intergenic |
| TACATTAGCTACTGCTGTTG+CGG | 0.553793 | 5_2:+67790034 | Msa0783640:CDS |
| GCTGTCGAGGTTGATCCTCC+AGG | 0.559631 | 5_2:+67789877 | Msa0783640:CDS |
| ACAAAAGATGCTCTTTCTGG+TGG | 0.562367 | 5_2:+67787996 | Msa0783640:CDS |
| GAAATCGAAAAGTTCAAGGA+AGG | 0.564439 | 5_2:+67787911 | Msa0783640:CDS |
| TGTCATGCAGATGCAGATGA+AGG | 0.565181 | 5_2:+67789698 | Msa0783640:intron |
| AAGTGTAGTGTTAGAAAATG+GGG | 0.568546 | 5_2:+67787886 | Msa0783640:exon |
| CAAGGAAGGGGAAGAAAGCA+TGG | 0.569927 | 5_2:+67787925 | Msa0783640:CDS |
| AAATCGAAAAGTTCAAGGAA+GGG | 0.576425 | 5_2:+67787912 | Msa0783640:CDS |
| TACTCATATTCCAGCTGTCG+AGG | 0.579607 | 5_2:+67789864 | Msa0783640:CDS |
| TTTGATGTGGCTAGATCTTG+CGG | 0.583564 | 5_2:+67789221 | Msa0783640:intron |
| GCAGGAACAGTTAAAGGCAC+CGG | 0.584872 | 5_2:-67790098 | None:intergenic |
| GAAAGTAATCACGAAGATGA+TGG | 0.598830 | 5_2:+67790326 | Msa0783640:CDS |
| TCGACAGCTGGAATATGAGT+AGG | 0.600011 | 5_2:-67789862 | None:intergenic |
| GTGGGATTAAATGAGCATCC+TGG | 0.637097 | 5_2:-67789895 | None:intergenic |
| TACCTGATGACTTTCATGTG+TGG | 0.645793 | 5_2:-67789914 | None:intergenic |
| GGATTAAATGAGCATCCTGG+AGG | 0.690842 | 5_2:-67789892 | None:intergenic |
| AAATACGTCAGAATCTAACA+CGG | 0.731068 | 5_2:-67789578 | None:intergenic |
| TCTGACGTATTTGATATGTG+GGG | 0.759234 | 5_2:+67789589 | Msa0783640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CCAAAATAAATAAATAAAAA+TGG | - | chr5_2:67788087-67788106 | None:intergenic | 10.0% |
| !!! | CCATTTTTATTTATTTATTT+TGG | + | chr5_2:67788084-67788103 | Msa0783640:intron | 10.0% |
| !!! | AATTTATTTTAAATTTGATG+TGG | + | chr5_2:67789208-67789227 | Msa0783640:intron | 10.0% |
| !!! | AATAAAACAAATTTTAAAAG+AGG | - | chr5_2:67789523-67789542 | None:intergenic | 10.0% |
| !! | TTAATTTATAATAACCAAAA+TGG | - | chr5_2:67789648-67789667 | None:intergenic | 10.0% |
| !!! | TTTTGGTTATTATAAATTAA+TGG | + | chr5_2:67789648-67789667 | Msa0783640:intron | 10.0% |
| !! | TTTGGTTATTATAAATTAAT+GGG | + | chr5_2:67789649-67789668 | Msa0783640:intron | 10.0% |
| !!! | GTGTATAAATTTTTATTTTA+TGG | + | chr5_2:67790565-67790584 | Msa0783640:intron | 10.0% |
| !!! | TTTATTTTTTAAAAACAAGG+AGG | + | chr5_2:67788688-67788707 | Msa0783640:intron | 15.0% |
| !! | TTAAAATAAATTCAAATCCA+AGG | - | chr5_2:67789200-67789219 | None:intergenic | 15.0% |
| !! | TTTCTTTAATAATCTATATC+AGG | + | chr5_2:67789549-67789568 | Msa0783640:intron | 15.0% |
| !! | TTACTTACAAATATATTAAG+TGG | - | chr5_2:67790692-67790711 | None:intergenic | 15.0% |
| !!! | TCATAAGTTGTTTTAGTTTT+AGG | + | chr5_2:67788498-67788517 | Msa0783640:intron | 20.0% |
| !!! | CATAAGTTGTTTTAGTTTTA+GGG | + | chr5_2:67788499-67788518 | Msa0783640:intron | 20.0% |
| !! | GAAAACACATCAATTATAAT+AGG | - | chr5_2:67789017-67789036 | None:intergenic | 20.0% |
| !! | ATCAATTAAAAAGTGAATTC+GGG | - | chr5_2:67789177-67789196 | None:intergenic | 20.0% |
| !! | GATCAATTAAAAAGTGAATT+CGG | - | chr5_2:67789178-67789197 | None:intergenic | 20.0% |
| !! | CTAAATAATAATATGCTTAG+CGG | + | chr5_2:67789436-67789455 | Msa0783640:intron | 20.0% |
| !! | TTTAATAATCTATATCAGGA+GGG | + | chr5_2:67789553-67789572 | Msa0783640:intron | 20.0% |
| !! | AAATATGGAAACAAATTCAT+AGG | - | chr5_2:67790192-67790211 | None:intergenic | 20.0% |
| !!! | TTAAATACTTTCTTTTTTGC+CGG | + | chr5_2:67790414-67790433 | Msa0783640:intron | 20.0% |
| !! | AAAAGTGTAGTGTTAGAAAA+TGG | + | chr5_2:67787884-67787903 | Msa0783640:exon | 25.0% |
| ! | AAAGTGTAGTGTTAGAAAAT+GGG | + | chr5_2:67787885-67787904 | Msa0783640:exon | 25.0% |
| ! | CAATTACATAAGCTTGTATA+TGG | + | chr5_2:67788149-67788168 | Msa0783640:intron | 25.0% |
| !!! | TGGAAAGTGTTTTTAGTTTT+AGG | + | chr5_2:67788169-67788188 | Msa0783640:intron | 25.0% |
| !!! | GGAAAGTGTTTTTAGTTTTA+GGG | + | chr5_2:67788170-67788189 | Msa0783640:intron | 25.0% |
| !!! | TTTTTAGTTTTAGGGTTGTT+TGG | + | chr5_2:67788178-67788197 | Msa0783640:intron | 25.0% |
| !!! | CATTTTTGAAGTGTTTGTTT+TGG | + | chr5_2:67788589-67788608 | Msa0783640:intron | 25.0% |
| ! | TACTCTAATGAAAAGCTATT+AGG | + | chr5_2:67788643-67788662 | Msa0783640:intron | 25.0% |
| ! | GTACAAGTTTATGTAATTCA+TGG | - | chr5_2:67789039-67789058 | None:intergenic | 25.0% |
| !!! | TTCACTTTTTAATTGATCCT+TGG | + | chr5_2:67789180-67789199 | Msa0783640:intron | 25.0% |
| !! | GACCTTATGAATATTTTCAT+TGG | - | chr5_2:67789391-67789410 | None:intergenic | 25.0% |
| ! | CTTTAATAATCTATATCAGG+AGG | + | chr5_2:67789552-67789571 | Msa0783640:intron | 25.0% |
| !!! | AAAGCATTTAGTATCCATTT+TGG | + | chr5_2:67789631-67789650 | Msa0783640:intron | 25.0% |
| ! | ATTAATGGGATGTTAACATT+AGG | + | chr5_2:67789663-67789682 | Msa0783640:intron | 25.0% |
| ! | AAGAACTTTATTGTTTAACC+AGG | + | chr5_2:67790010-67790029 | Msa0783640:intron | 25.0% |
| ! | TAAAGTCTACAGAAATGAAT+TGG | + | chr5_2:67790067-67790086 | Msa0783640:CDS | 25.0% |
| ! | AAAGTCTACAGAAATGAATT+GGG | + | chr5_2:67790068-67790087 | Msa0783640:CDS | 25.0% |
| !!! | TGTTATTTTTATGACCTGAT+TGG | - | chr5_2:67790449-67790468 | None:intergenic | 25.0% |
| !! | CTTAATTTCATTTTGAACAC+TGG | + | chr5_2:67790657-67790676 | Msa0783640:intron | 25.0% |
| ! | TCAGATATTTAGACATAACT+GGG | - | chr5_2:67790744-67790763 | None:intergenic | 25.0% |
| ! | ATCAGATATTTAGACATAAC+TGG | - | chr5_2:67790745-67790764 | None:intergenic | 25.0% |
| ! | TGTATTGTTTGAATCACTAT+TGG | + | chr5_2:67790770-67790789 | Msa0783640:intron | 25.0% |
| !!! | GTCACTTTCTTTGTTTTAAT+GGG | - | chr5_2:67790801-67790820 | None:intergenic | 25.0% |
| !!! | AGTCACTTTCTTTGTTTTAA+TGG | - | chr5_2:67790802-67790821 | None:intergenic | 25.0% |
| !!! | TTGAGTTGAATAAGAGAATT+CGG | + | chr5_2:67790826-67790845 | Msa0783640:CDS | 25.0% |
| AAGTGTAGTGTTAGAAAATG+GGG | + | chr5_2:67787886-67787905 | Msa0783640:exon | 30.0% | |
| AAATCGAAAAGTTCAAGGAA+GGG | + | chr5_2:67787912-67787931 | Msa0783640:CDS | 30.0% | |
| !! | TTTTTCGAAGACAAATCCAA+AGG | + | chr5_2:67788050-67788069 | Msa0783640:CDS | 30.0% |
| TCATAAGTGCTAAATGTCAT+AGG | - | chr5_2:67788224-67788243 | None:intergenic | 30.0% | |
| TCTAATAAGCCAATCCAAAT+AGG | - | chr5_2:67788407-67788426 | None:intergenic | 30.0% | |
| CACTTCAAAAATGACAAAAG+TGG | - | chr5_2:67788582-67788601 | None:intergenic | 30.0% | |
| AAGATCGTGCTAAAAAAATC+TGG | - | chr5_2:67788800-67788819 | None:intergenic | 30.0% | |
| ACTAATGGGAATAAGATCAA+GGG | - | chr5_2:67788852-67788871 | None:intergenic | 30.0% | |
| AACTAATGGGAATAAGATCA+AGG | - | chr5_2:67788853-67788872 | None:intergenic | 30.0% | |
| ATTAAGCTGTTTATCCAAAC+AGG | + | chr5_2:67788958-67788977 | Msa0783640:intron | 30.0% | |
| TTAAGCTGTTTATCCAAACA+GGG | + | chr5_2:67788959-67788978 | Msa0783640:intron | 30.0% | |
| ACATAAACTTGTACGAGAAA+TGG | + | chr5_2:67789045-67789064 | Msa0783640:intron | 30.0% | |
| !! | TGTTTCTTTAGAGTAGATGA+AGG | - | chr5_2:67789330-67789349 | None:intergenic | 30.0% |
| TAAAGAAACACGCTAAAAAC+CGG | + | chr5_2:67789340-67789359 | Msa0783640:CDS | 30.0% | |
| CGCCAATGAAAATATTCATA+AGG | + | chr5_2:67789386-67789405 | Msa0783640:CDS | 30.0% | |
| ! | TATTTGGATTTTGGACAGAA+CGG | + | chr5_2:67789465-67789484 | Msa0783640:intron | 30.0% |
| GTTTGCGATGAAAAGAAAAA+AGG | - | chr5_2:67789501-67789520 | None:intergenic | 30.0% | |
| AAATACGTCAGAATCTAACA+CGG | - | chr5_2:67789581-67789600 | None:intergenic | 30.0% | |
| ATTCTGACGTATTTGATATG+TGG | + | chr5_2:67789587-67789606 | Msa0783640:CDS | 30.0% | |
| TTCTGACGTATTTGATATGT+GGG | + | chr5_2:67789588-67789607 | Msa0783640:CDS | 30.0% | |
| TAAAATGGAAGAAGAAACAC+TGG | - | chr5_2:67789771-67789790 | None:intergenic | 30.0% | |
| AATGTGCAGCAACAATAAAA+TGG | - | chr5_2:67789786-67789805 | None:intergenic | 30.0% | |
| TATCAAGAGCTTCGTAAATA+TGG | - | chr5_2:67790207-67790226 | None:intergenic | 30.0% | |
| !!! | ATTCAGTAACCTTGCTTTTT+TGG | + | chr5_2:67790263-67790282 | Msa0783640:intron | 30.0% |
| ! | AAGGCTAAGTTAAGCTTTTT+AGG | + | chr5_2:67790543-67790562 | Msa0783640:intron | 30.0% |
| CGCTTTCAAAAAAAGAATAC+CGG | - | chr5_2:67790602-67790621 | None:intergenic | 30.0% | |
| !!! | CGGTATTCTTTTTTTGAAAG+CGG | + | chr5_2:67790600-67790619 | Msa0783640:intron | 30.0% |
| GGAAGAAATCGAAAAGTTCA+AGG | + | chr5_2:67787907-67787926 | Msa0783640:CDS | 35.0% | |
| GAAATCGAAAAGTTCAAGGA+AGG | + | chr5_2:67787911-67787930 | Msa0783640:CDS | 35.0% | |
| AATCGAAAAGTTCAAGGAAG+GGG | + | chr5_2:67787913-67787932 | Msa0783640:CDS | 35.0% | |
| TCAACAAAAGATGCTCTTTC+TGG | + | chr5_2:67787993-67788012 | Msa0783640:CDS | 35.0% | |
| TTCGAAAAAGAGAGAATCAC+TGG | - | chr5_2:67788039-67788058 | None:intergenic | 35.0% | |
| AATGGGTACATACATACCTT+TGG | - | chr5_2:67788069-67788088 | None:intergenic | 35.0% | |
| !!! | AGTTTTAGGGTTGTTTGGAT+TGG | + | chr5_2:67788183-67788202 | Msa0783640:intron | 35.0% |
| ACTTACACATAGAGCCTATT+TGG | + | chr5_2:67788390-67788409 | Msa0783640:intron | 35.0% | |
| TAAGTACCTGTGAGATTGAT+TGG | + | chr5_2:67788442-67788461 | Msa0783640:intron | 35.0% | |
| AAGTACCTGTGAGATTGATT+GGG | + | chr5_2:67788443-67788462 | Msa0783640:intron | 35.0% | |
| AGCTATCTTCGAGAACTAAT+GGG | - | chr5_2:67788866-67788885 | None:intergenic | 35.0% | |
| AAGCTATCTTCGAGAACTAA+TGG | - | chr5_2:67788867-67788886 | None:intergenic | 35.0% | |
| ATCCAAACTGTCTCATTATG+TGG | + | chr5_2:67788984-67789003 | Msa0783640:intron | 35.0% | |
| TACCACATAATGAGACAGTT+TGG | - | chr5_2:67788989-67789008 | None:intergenic | 35.0% | |
| !! | TTATCTGCGTTTCTAGTATG+TGG | + | chr5_2:67789107-67789126 | Msa0783640:intron | 35.0% |
| !! | CTAGTATGTGGTTGATTTGT+TGG | + | chr5_2:67789119-67789138 | Msa0783640:intron | 35.0% |
| ! | TTCATTGGCGACTAAACTTT+TGG | - | chr5_2:67789376-67789395 | None:intergenic | 35.0% |
| ! | CGGCAAACATATTTGGATTT+TGG | + | chr5_2:67789456-67789475 | Msa0783640:intron | 35.0% |
| ! | ATTTGGATTTTGGACAGAAC+GGG | + | chr5_2:67789466-67789485 | Msa0783640:intron | 35.0% |
| TCTGACGTATTTGATATGTG+GGG | + | chr5_2:67789589-67789608 | Msa0783640:CDS | 35.0% | |
| TTTGATATGTGGGGTGATAA+AGG | + | chr5_2:67789598-67789617 | Msa0783640:CDS | 35.0% | |
| AGGCAACAAGAAAGTGAAAA+AGG | + | chr5_2:67789718-67789737 | Msa0783640:CDS | 35.0% | |
| ! | GAAAGTCATCAGGTAGTTTT+TGG | + | chr5_2:67789922-67789941 | Msa0783640:intron | 35.0% |
| CCACATCAAGAAAATACATC+TGG | - | chr5_2:67790289-67790308 | None:intergenic | 35.0% | |
| ! | CCAGATGTATTTTCTTGATG+TGG | + | chr5_2:67790286-67790305 | Msa0783640:intron | 35.0% |
| GAAAGTAATCACGAAGATGA+TGG | + | chr5_2:67790326-67790345 | Msa0783640:CDS | 35.0% | |
| !! | ACCTGATTGGTAATGTAAAC+CGG | - | chr5_2:67790436-67790455 | None:intergenic | 35.0% |
| TTATACATGAAAGCTTGAGC+AGG | - | chr5_2:67790484-67790503 | None:intergenic | 35.0% | |
| !! | TGCATGTTGATAGCTAATGA+AGG | + | chr5_2:67790524-67790543 | Msa0783640:intron | 35.0% |
| !!! | TTTATTTTATGGAGACCACG+TGG | + | chr5_2:67790576-67790595 | Msa0783640:intron | 35.0% |
| TGTTTGAATCACTATTGGAC+AGG | + | chr5_2:67790775-67790794 | Msa0783640:intron | 35.0% | |
| ACAAAAGATGCTCTTTCTGG+TGG | + | chr5_2:67787996-67788015 | Msa0783640:CDS | 40.0% | |
| CACATAGAGCCTATTTGGAT+TGG | + | chr5_2:67788395-67788414 | Msa0783640:intron | 40.0% | |
| ATTCTCCCAATCAATCTCAC+AGG | - | chr5_2:67788451-67788470 | None:intergenic | 40.0% | |
| !! | TTGGTTGTAGAGTACTGTAC+TGG | + | chr5_2:67789138-67789157 | Msa0783640:intron | 40.0% |
| TTTGATGTGGCTAGATCTTG+CGG | + | chr5_2:67789221-67789240 | Msa0783640:intron | 40.0% | |
| ! | TTTAGAGTAGATGAAGGCAC+TGG | - | chr5_2:67789324-67789343 | None:intergenic | 40.0% |
| ! | AACTTTTGGACACCACTTTC+CGG | - | chr5_2:67789362-67789381 | None:intergenic | 40.0% |
| TGCTTAGCGGCAAACATATT+TGG | + | chr5_2:67789449-67789468 | Msa0783640:intron | 40.0% | |
| ! | TTTGGATTTTGGACAGAACG+GGG | + | chr5_2:67789467-67789486 | Msa0783640:intron | 40.0% |
| AGGTACACGTTATTGCATAG+CGG | + | chr5_2:67789738-67789757 | Msa0783640:intron | 40.0% | |
| ACCTGATGACTTTCATGTGT+GGG | - | chr5_2:67789916-67789935 | None:intergenic | 40.0% | |
| TACCTGATGACTTTCATGTG+TGG | - | chr5_2:67789917-67789936 | None:intergenic | 40.0% | |
| TACATTAGCTACTGCTGTTG+CGG | + | chr5_2:67790034-67790053 | Msa0783640:CDS | 40.0% | |
| AGCAAGGTTACTGAATTAGC+AGG | - | chr5_2:67790259-67790278 | None:intergenic | 40.0% | |
| TACATCTGGCCAAAAAAGCA+AGG | - | chr5_2:67790275-67790294 | None:intergenic | 40.0% | |
| ACAGTTTGGATGACCCTGTT+TGG | - | chr5_2:67788975-67788994 | None:intergenic | 45.0% | |
| !! | AAGGCACTGGCTTAACAAAC+TGG | - | chr5_2:67789311-67789330 | None:intergenic | 45.0% |
| ACACGCTAAAAACCGGAAAG+TGG | + | chr5_2:67789347-67789366 | Msa0783640:CDS | 45.0% | |
| ! | TTGGATTTTGGACAGAACGG+GGG | + | chr5_2:67789468-67789487 | Msa0783640:intron | 45.0% |
| TGTCATGCAGATGCAGATGA+AGG | + | chr5_2:67789698-67789717 | Msa0783640:intron | 45.0% | |
| TCGACAGCTGGAATATGAGT+AGG | - | chr5_2:67789865-67789884 | None:intergenic | 45.0% | |
| TACTCATATTCCAGCTGTCG+AGG | + | chr5_2:67789864-67789883 | Msa0783640:CDS | 45.0% | |
| GGATTAAATGAGCATCCTGG+AGG | - | chr5_2:67789895-67789914 | None:intergenic | 45.0% | |
| GTGGGATTAAATGAGCATCC+TGG | - | chr5_2:67789898-67789917 | None:intergenic | 45.0% | |
| TCCCACACATGAAAGTCATC+AGG | + | chr5_2:67789912-67789931 | Msa0783640:CDS | 45.0% | |
| AACAACATCGCTAACAGCAG+AGG | - | chr5_2:67789962-67789981 | None:intergenic | 45.0% | |
| CAGCAGTAGCTAATGTATCC+TGG | - | chr5_2:67790031-67790050 | None:intergenic | 45.0% | |
| AAATGAATTGGGCCCTGAAC+CGG | + | chr5_2:67790079-67790098 | Msa0783640:CDS | 45.0% | |
| TCTCCAGCAGGAACAGTTAA+AGG | - | chr5_2:67790107-67790126 | None:intergenic | 45.0% | |
| TCAGAAATAGCTTCTCCAGC+AGG | - | chr5_2:67790119-67790138 | None:intergenic | 45.0% | |
| ! | GCCGGTTTACATTACCAATC+AGG | + | chr5_2:67790432-67790451 | Msa0783640:intron | 45.0% |
| AAGCTTGAGCAGGAAGGAAA+TGG | - | chr5_2:67790474-67790493 | None:intergenic | 45.0% | |
| ACATGAAAGCTTGAGCAGGA+AGG | - | chr5_2:67790480-67790499 | None:intergenic | 45.0% | |
| AAAAAAGAATACCGGCCACG+TGG | - | chr5_2:67790594-67790613 | None:intergenic | 45.0% | |
| !! | CAAAATAAATAAATAAAAAT+GGG | - | chr5_2:67788086-67788105 | None:intergenic | 5.0% |
| !!! | TATTTTATTTTTTAAAAACA+AGG | + | chr5_2:67788685-67788704 | Msa0783640:intron | 5.0% |
| !!! | TTAAAATTCATTTTTATATT+TGG | + | chr5_2:67788726-67788745 | Msa0783640:intron | 5.0% |
| !!! | TAAAATTCATTTTTATATTT+GGG | + | chr5_2:67788727-67788746 | Msa0783640:intron | 5.0% |
| CAAGGAAGGGGAAGAAAGCA+TGG | + | chr5_2:67787925-67787944 | Msa0783640:CDS | 50.0% | |
| !! | CAGTTAAAGGCACCGGTTCA+GGG | - | chr5_2:67790094-67790113 | None:intergenic | 50.0% |
| !! | ACAGTTAAAGGCACCGGTTC+AGG | - | chr5_2:67790095-67790114 | None:intergenic | 50.0% |
| ! | GCAGGAACAGTTAAAGGCAC+CGG | - | chr5_2:67790101-67790120 | None:intergenic | 50.0% |
| GTGCCTTTAACTGTTCCTGC+TGG | + | chr5_2:67790101-67790120 | Msa0783640:CDS | 50.0% | |
| ! | TTTTATGGAGACCACGTGGC+CGG | + | chr5_2:67790580-67790599 | Msa0783640:intron | 50.0% |
| GGAGGATCAACCTCGACAGC+TGG | - | chr5_2:67789877-67789896 | None:intergenic | 60.0% | |
| ! | GCTGTCGAGGTTGATCCTCC+AGG | + | chr5_2:67789877-67789896 | Msa0783640:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 67787874 | 67790875 | 67787874 | ID=Msa0783640;Name=Msa0783640 |
| chr5_2 | mRNA | 67787874 | 67790875 | 67787874 | ID=Msa0783640-mRNA-1;Parent=Msa0783640;Name=Msa0783640-mRNA-1;_AED=0.13;_eAED=0.13;_QI=29|1|0.87|1|0.85|0.75|8|0|262 |
| chr5_2 | exon | 67787874 | 67788071 | 67787874 | ID=Msa0783640-mRNA-1:exon:20317;Parent=Msa0783640-mRNA-1 |
| chr5_2 | exon | 67789235 | 67789407 | 67789235 | ID=Msa0783640-mRNA-1:exon:20318;Parent=Msa0783640-mRNA-1 |
| chr5_2 | exon | 67789571 | 67789619 | 67789571 | ID=Msa0783640-mRNA-1:exon:20319;Parent=Msa0783640-mRNA-1 |
| chr5_2 | exon | 67789708 | 67789739 | 67789708 | ID=Msa0783640-mRNA-1:exon:20320;Parent=Msa0783640-mRNA-1 |
| chr5_2 | exon | 67789853 | 67789933 | 67789853 | ID=Msa0783640-mRNA-1:exon:20321;Parent=Msa0783640-mRNA-1 |
| chr5_2 | exon | 67790032 | 67790145 | 67790032 | ID=Msa0783640-mRNA-1:exon:20322;Parent=Msa0783640-mRNA-1 |
| chr5_2 | exon | 67790290 | 67790378 | 67790290 | ID=Msa0783640-mRNA-1:exon:20323;Parent=Msa0783640-mRNA-1 |
| chr5_2 | exon | 67790797 | 67790875 | 67790797 | ID=Msa0783640-mRNA-1:exon:20324;Parent=Msa0783640-mRNA-1 |
| chr5_2 | five_prime_UTR | 67787874 | 67787902 | 67787874 | ID=Msa0783640-mRNA-1:five_prime_utr;Parent=Msa0783640-mRNA-1 |
| chr5_2 | CDS | 67787903 | 67788071 | 67787903 | ID=Msa0783640-mRNA-1:cds;Parent=Msa0783640-mRNA-1 |
| chr5_2 | CDS | 67789235 | 67789407 | 67789235 | ID=Msa0783640-mRNA-1:cds;Parent=Msa0783640-mRNA-1 |
| chr5_2 | CDS | 67789571 | 67789619 | 67789571 | ID=Msa0783640-mRNA-1:cds;Parent=Msa0783640-mRNA-1 |
| chr5_2 | CDS | 67789708 | 67789739 | 67789708 | ID=Msa0783640-mRNA-1:cds;Parent=Msa0783640-mRNA-1 |
| chr5_2 | CDS | 67789853 | 67789933 | 67789853 | ID=Msa0783640-mRNA-1:cds;Parent=Msa0783640-mRNA-1 |
| chr5_2 | CDS | 67790032 | 67790145 | 67790032 | ID=Msa0783640-mRNA-1:cds;Parent=Msa0783640-mRNA-1 |
| chr5_2 | CDS | 67790290 | 67790378 | 67790290 | ID=Msa0783640-mRNA-1:cds;Parent=Msa0783640-mRNA-1 |
| chr5_2 | CDS | 67790797 | 67790875 | 67790797 | ID=Msa0783640-mRNA-1:cds;Parent=Msa0783640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
