AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0819060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0819060 MtrunA17_Chr5g0437971 98.634 366 5 0 1 366 1 366 0.0 727
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0819060 AT2G40430.1 53.414 249 107 5 1 248 1 241 1.60e-68 222
Msa0819060 AT2G40430.1 53.704 162 74 1 199 360 275 435 5.86e-41 149
Msa0819060 AT2G40430.2 53.414 249 107 5 1 248 1 241 2.00e-68 222
Msa0819060 AT2G40430.2 53.704 162 74 1 199 360 275 435 5.66e-41 150
Msa0819060 AT2G40430.3 53.704 162 74 1 199 360 126 286 3.01e-42 149
Msa0819060 AT2G40430.3 73.563 87 23 0 1 87 1 87 5.43e-35 130

Find 72 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACAAAAGATGCTCTTTC+TGG 0.195441 5_3:-55149876 Msa0819060:CDS
AAAAGTGTAGTGTACGAAAA+TGG 0.221576 5_3:-55149985 Msa0819060:exon
TTCATTGGCGACTAAACTTT+TGG 0.280238 5_3:+55148594 None:intergenic
ACAGTTAAAGGCACCAGTTC+AGG 0.284383 5_3:+55147875 None:intergenic
TAAAGTCTACAGAAATGAAT+TGG 0.292665 5_3:-55147900 Msa0819060:CDS
TCTCCAGCAGGAACAGTTAA+AGG 0.308159 5_3:+55147863 None:intergenic
TTATTAAGCGAAGAGATAAA+TGG 0.314835 5_3:-55146681 Msa0819060:CDS
AAGTCGCTCCGCATGATATA+TGG 0.329886 5_3:-55145848 Msa0819060:three_prime_UTR
AAAGTGTAGTGTACGAAAAT+GGG 0.340852 5_3:-55149984 Msa0819060:exon
AACCTGTTTCTCCTCGGCTT+TGG 0.348665 5_3:+55146461 None:intergenic
CATGCGGAGCGACTTAAGTT+AGG 0.358651 5_3:+55145856 None:intergenic
ATTCTTCTTCTTCTTTGATT+CGG 0.360872 5_3:+55147098 None:intergenic
ACAAGTCTACCTTAAGCTTT+CGG 0.364930 5_3:+55146652 None:intergenic
AGGCAACAAGAAAGTGAAAA+AGG 0.370426 5_3:-55148249 Msa0819060:intron
TTTGATATGTGGGGTGATAA+AGG 0.381349 5_3:-55148369 Msa0819060:intron
ATTTCTCAAAAGAAATTGAT+AGG 0.389918 5_3:-55147077 Msa0819060:intron
TCGCTTAATAAAACTTGAAC+AGG 0.391740 5_3:+55146693 None:intergenic
TTCCAAAGCCGAGGAGAAAC+AGG 0.394318 5_3:-55146463 Msa0819060:intron
TGCTAAACAAGAGAGGTTAA+AGG 0.397687 5_3:-55146891 Msa0819060:CDS
TTGAGTTGAATAAGAGAATT+CGG 0.399925 5_3:-55147146 Msa0819060:CDS
TGGATCCATCCGAAAGCTTA+AGG 0.404582 5_3:-55146661 Msa0819060:intron
AAGGCACTGGCTTAACAAAC+TGG 0.432795 5_3:+55148659 None:intergenic
ATTCTGACGTCTTTGATATG+TGG 0.432852 5_3:-55148380 Msa0819060:CDS
AAATGAATTGGGCCCTGAAC+TGG 0.447322 5_3:-55147888 Msa0819060:CDS
CGCCAATGAAAATATTCATA+AGG 0.466327 5_3:-55148581 Msa0819060:intron
GGAGGATCAACCTCGACAGC+TGG 0.470903 5_3:+55148093 None:intergenic
GGGTTGTTGCACCCTTCTAA+AGG 0.473919 5_3:-55146522 Msa0819060:CDS
AAAGTCTACAGAAATGAATT+GGG 0.481927 5_3:-55147899 Msa0819060:CDS
TTCTGACGTCTTTGATATGT+GGG 0.483589 5_3:-55148379 Msa0819060:CDS
GGAAGAAATCGAAGAGTTCA+AGG 0.484892 5_3:-55149962 Msa0819060:CDS
TCAGAAATAGCTTCTCCAGC+AGG 0.486553 5_3:+55147851 None:intergenic
AAGGCATGTCCTCCTCGCTT+AGG 0.491146 5_3:-55146872 Msa0819060:CDS
GAAATGATTAACAAAGATCC+TGG 0.496323 5_3:-55145653 Msa0819060:three_prime_UTR
GTGCCTTTAACTGTTCCTGC+TGG 0.498193 5_3:-55147866 Msa0819060:CDS
AATCGAAGAGTTCAAGGAAA+GGG 0.500348 5_3:-55149956 Msa0819060:CDS
TCCCACACATGAAAGTCATC+AGG 0.503208 5_3:-55148055 Msa0819060:intron
CAGTTAAAGGCACCAGTTCA+GGG 0.505603 5_3:+55147876 None:intergenic
TATAAAAGCATAGAGAAGAG+AGG 0.512651 5_3:-55146494 Msa0819060:CDS
AATAAAACTTGAACAGGAGC+AGG 0.514471 5_3:+55146699 None:intergenic
TAAACCAACCTGTTTCTCCT+CGG 0.519016 5_3:+55146455 None:intergenic
AAGCATAGAGAAGAGAGGGT+TGG 0.525558 5_3:-55146489 Msa0819060:CDS
GGAAATTAAGCATGAAGATG+AGG 0.531668 5_3:-55146945 Msa0819060:CDS
TGTCATGCAGACGCAGATGA+AGG 0.540396 5_3:-55148269 Msa0819060:intron
TGTTTCTTTAGAGTAGATGA+AGG 0.544003 5_3:+55148640 None:intergenic
TACTTGTGCTTTCCTAAGCG+AGG 0.545713 5_3:+55146860 None:intergenic
GTCTACCTTAAGCTTTCGGA+TGG 0.547767 5_3:+55146656 None:intergenic
ATGCGGAGCGACTTAAGTTA+GGG 0.551693 5_3:+55145857 None:intergenic
TTTAGAGTAGATGAAGGCAC+TGG 0.552068 5_3:+55148646 None:intergenic
ACCTGATGACTTTCATGTGT+GGG 0.552896 5_3:+55148054 None:intergenic
TACATTAGCTACTGCTGTTG+CGG 0.553793 5_3:-55147933 Msa0819060:CDS
GCTGTCGAGGTTGATCCTCC+AGG 0.559631 5_3:-55148090 Msa0819060:CDS
ACAAAAGATGCTCTTTCTGG+TGG 0.562367 5_3:-55149873 Msa0819060:CDS
CAAGGAAAGGGAAGAAAGCA+TGG 0.567630 5_3:-55149944 Msa0819060:CDS
AAATCGAAGAGTTCAAGGAA+AGG 0.574179 5_3:-55149957 Msa0819060:CDS
TTTATACCGATCCTTTAGAA+GGG 0.578806 5_3:+55146511 None:intergenic
TACTCATATTCCAGCTGTCG+AGG 0.579607 5_3:-55148103 Msa0819060:CDS
ATAAAAGCATAGAGAAGAGA+GGG 0.580504 5_3:-55146493 Msa0819060:CDS
TTTGATGTGGCTAGATCTTG+CGG 0.583564 5_3:-55148746 Msa0819060:intron
GTTGCACCCTTCTAAAGGAT+CGG 0.583877 5_3:-55146517 Msa0819060:CDS
AAGTGTAGTGTACGAAAATG+GGG 0.585208 5_3:-55149983 Msa0819060:exon
GAAAGTAATCACGAAGATGA+TGG 0.598830 5_3:-55147641 Msa0819060:CDS
TCGACAGCTGGAATATGAGT+AGG 0.600011 5_3:+55148105 None:intergenic
GGTTGGTTGTTCCAAAGCCG+AGG 0.611415 5_3:-55146472 Msa0819060:CDS
TTAAGTTAGGGAAGAAAACA+AGG 0.622310 5_3:+55145869 None:intergenic
GTGGGATTAAATGAGCATCC+TGG 0.637097 5_3:+55148072 None:intergenic
TACCTGATGACTTTCATGTG+TGG 0.645793 5_3:+55148053 None:intergenic
TCTTCTTGCCATATATCATG+CGG 0.653944 5_3:+55145840 None:intergenic
TTGTGCTTTCCTAAGCGAGG+AGG 0.655472 5_3:+55146863 None:intergenic
GACAAGTTGCTAAACAAGAG+AGG 0.673783 5_3:-55146898 Msa0819060:CDS
GGATTAAATGAGCATCCTGG+AGG 0.690842 5_3:+55148075 None:intergenic
TCTGACGTCTTTGATATGTG+GGG 0.728193 5_3:-55148378 Msa0819060:CDS
AAAGACGTCAGAATCTAACA+CGG 0.744368 5_3:+55148389 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CCAAAATAAATAAATAAAAA+TGG + chr5_3:55145807-55145826 None:intergenic 10.0%
!!! CCATTTTTATTTATTTATTT+TGG - chr5_3:55145804-55145823 Msa0819060:three_prime_UTR 10.0%
!!! TATTTTATTTTTTCAAAACA+AGG - chr5_3:55146345-55146364 Msa0819060:intron 10.0%
!!! AATTTATTTTAAATTTGATG+TGG - chr5_3:55146830-55146849 Msa0819060:intron 10.0%
!!! AATAAAACAAATTTTAAAAG+AGG + chr5_3:55147145-55147164 None:intergenic 10.0%
!! TTAATTTATAATAACCAAAA+TGG + chr5_3:55147270-55147289 None:intergenic 10.0%
!!! TTTTGGTTATTATAAATTAA+TGG - chr5_3:55147270-55147289 Msa0819060:intron 10.0%
!! TTTGGTTATTATAAATTAAT+GGG - chr5_3:55147271-55147290 Msa0819060:intron 10.0%
!! ATTTATTATAGAAAAAGATT+TGG - chr5_3:55150012-55150031 Msa0819060:five_prime_UTR 10.0%
!!! GTTAAAATTCATTTTCTTTT+AGG - chr5_3:55146385-55146404 Msa0819060:intron 15.0%
!!! TAACACAATCTTTTTTTTTT+AGG - chr5_3:55146433-55146452 Msa0819060:intron 15.0%
!! TTAAAATAAATTCAAATCCA+AGG + chr5_3:55146822-55146841 None:intergenic 15.0%
!! TTTCTTTAATAATCTATATC+AGG - chr5_3:55147171-55147190 Msa0819060:CDS 15.0%
!!! TTTTAGGTGTATAAATTTTA+TGG - chr5_3:55148181-55148200 Msa0819060:intron 15.0%
!! TTACTTACAAATATATTAAG+TGG + chr5_3:55148309-55148328 None:intergenic 15.0%
!!! ATTAGTCTAAAAAAAAAGTA+AGG + chr5_3:55149018-55149037 None:intergenic 15.0%
!!! TATTTTGCTTACAATTTTAT+TGG - chr5_3:55149894-55149913 Msa0819060:CDS 15.0%
!!! TCATAAGTTGTTTTAGTTTT+AGG - chr5_3:55146162-55146181 Msa0819060:intron 20.0%
!!! CATAAGTTGTTTTAGTTTTA+GGG - chr5_3:55146163-55146182 Msa0819060:intron 20.0%
!!! TTTATTTTTTCAAAACAAGG+AGG - chr5_3:55146348-55146367 Msa0819060:intron 20.0%
!! GAAAACACATCAATTATAAT+AGG + chr5_3:55146638-55146657 None:intergenic 20.0%
!! CTAAATAATAATATGCTTAG+TGG - chr5_3:55147058-55147077 Msa0819060:intron 20.0%
!! TTTAATAATCTATATCAGGA+GGG - chr5_3:55147175-55147194 Msa0819060:CDS 20.0%
!! AAATATGGAAACAAATTCAT+AGG + chr5_3:55147814-55147833 None:intergenic 20.0%
!!! TTAAATACTTTCTTTTTTGC+CGG - chr5_3:55148036-55148055 Msa0819060:intron 20.0%
!! ATTTCTCAAAAGAAATTGAT+AGG - chr5_3:55148512-55148531 Msa0819060:intron 20.0%
!!! ACTAATTTTCCTACTTATTT+TGG - chr5_3:55149032-55149051 Msa0819060:intron 20.0%
!!! TTATTTTGGTGTACATAATT+AGG - chr5_3:55149046-55149065 Msa0819060:intron 20.0%
!!! TATTTTGGTGTACATAATTA+GGG - chr5_3:55149047-55149066 Msa0819060:intron 20.0%
!! ATTATTATCTCAAACAGATT+TGG - chr5_3:55149201-55149220 Msa0819060:intron 20.0%
!!! ATCAAATTTACATATCCTTT+TGG - chr5_3:55149487-55149506 Msa0819060:intron 20.0%
!!! TTTTCAATTTTCAGGAACAA+GGG + chr5_3:55145587-55145606 None:intergenic 25.0%
!!! TTTTTCAATTTTCAGGAACA+AGG + chr5_3:55145588-55145607 None:intergenic 25.0%
!!! ACTACACTTTTTCAATTTTC+AGG + chr5_3:55145595-55145614 None:intergenic 25.0%
!!! CATTTTTGAAGTGTTTGTTT+TGG - chr5_3:55146251-55146270 Msa0819060:intron 25.0%
! CTCTATAAAGAAAAGCTATT+AGG - chr5_3:55146303-55146322 Msa0819060:intron 25.0%
! AGCTTATGAAAACAACTTAT+AGG - chr5_3:55146503-55146522 Msa0819060:CDS 25.0%
! ATTAAGCTGTTTATTCAAAC+AGG - chr5_3:55146579-55146598 Msa0819060:intron 25.0%
! TTAAGCTGTTTATTCAAACA+GGG - chr5_3:55146580-55146599 Msa0819060:intron 25.0%
! GTACAAGTTTATGTAATTCA+TGG + chr5_3:55146660-55146679 None:intergenic 25.0%
! ATCAATGAAAAAGTGAATTC+TGG + chr5_3:55146799-55146818 None:intergenic 25.0%
!! GACCTTATGAATATTTTCAT+TGG + chr5_3:55147013-55147032 None:intergenic 25.0%
! CTTTAATAATCTATATCAGG+AGG - chr5_3:55147174-55147193 Msa0819060:CDS 25.0%
!!! AAAGCATTTAGTATCCATTT+TGG - chr5_3:55147253-55147272 Msa0819060:intron 25.0%
! ATTAATGGGATGTTAACATT+AGG - chr5_3:55147285-55147304 Msa0819060:intron 25.0%
! AAGAACTTTATTGTTTAACC+AGG - chr5_3:55147632-55147651 Msa0819060:CDS 25.0%
! TAAAGTCTACAGAAATGAAT+TGG - chr5_3:55147689-55147708 Msa0819060:intron 25.0%
! AAAGTCTACAGAAATGAATT+GGG - chr5_3:55147690-55147709 Msa0819060:intron 25.0%
!!! TGTTATTTTTATGACCTGAT+TGG + chr5_3:55148071-55148090 None:intergenic 25.0%
! GCTTTCAAAAAAAAGAATAC+CGG + chr5_3:55148218-55148237 None:intergenic 25.0%
!! CTTAATTTCATTTTGAACAC+TGG - chr5_3:55148274-55148293 Msa0819060:intron 25.0%
! TCAGATATTTAGACATAACT+GGG + chr5_3:55148361-55148380 None:intergenic 25.0%
! ATCAGATATTTAGACATAAC+TGG + chr5_3:55148362-55148381 None:intergenic 25.0%
! TGTATTGTTTGAATCACTAT+TGG - chr5_3:55148387-55148406 Msa0819060:CDS 25.0%
!!! GTCACTTTCTTTGTTTTAAT+GGG + chr5_3:55148418-55148437 None:intergenic 25.0%
!!! AGTCACTTTCTTTGTTTTAA+TGG + chr5_3:55148419-55148438 None:intergenic 25.0%
!!! TTGAGTTGAATAAGAGAATT+CGG - chr5_3:55148443-55148462 Msa0819060:intron 25.0%
! ATTCTTCTTCTTCTTTGATT+CGG + chr5_3:55148494-55148513 None:intergenic 25.0%
! CATTAATACAAGTACGATAA+GGG + chr5_3:55148772-55148791 None:intergenic 25.0%
! CTTATCGTACTTGTATTAAT+GGG - chr5_3:55148771-55148790 Msa0819060:intron 25.0%
! TAACGTAATTGTTGTAGAAA+TGG + chr5_3:55148839-55148858 None:intergenic 25.0%
! TTATTAAGCGAAGAGATAAA+TGG - chr5_3:55148908-55148927 Msa0819060:intron 25.0%
! TTATGTACACCAAAATAAGT+AGG + chr5_3:55149044-55149063 None:intergenic 25.0%
!! GGATTTTGTAGAAGTTAATT+TGG - chr5_3:55149346-55149365 Msa0819060:intron 25.0%
!! TGAGTTTAAAGTGAAATAGT+TGG - chr5_3:55149376-55149395 Msa0819060:intron 25.0%
!! TGAAATAGTTGGTGTTTAAA+TGG - chr5_3:55149387-55149406 Msa0819060:intron 25.0%
!!! TTGAAAGTTTTGACTTGAAA+TGG + chr5_3:55149462-55149481 None:intergenic 25.0%
!! ATTTCAAGTCAAAACTTTCA+AGG - chr5_3:55149461-55149480 Msa0819060:intron 25.0%
!! AGTCTTTGATTTAGAATTTG+AGG - chr5_3:55149569-55149588 Msa0819060:intron 25.0%
! ATTGAAATATACAACATGGA+AGG + chr5_3:55149631-55149650 None:intergenic 25.0%
! TTCCATGTTGTATATTTCAA+TGG - chr5_3:55149630-55149649 Msa0819060:intron 25.0%
! ATCCATTGAAATATACAACA+TGG + chr5_3:55149635-55149654 None:intergenic 25.0%
! ATTATGATTATGCATTATGC+AGG - chr5_3:55149685-55149704 Msa0819060:intron 25.0%
! AAAAGTGTAGTGTACGAAAA+TGG - chr5_3:55145604-55145623 Msa0819060:intron 30.0%
AAAGTGTAGTGTACGAAAAT+GGG - chr5_3:55145605-55145624 Msa0819060:intron 30.0%
!! TTTTTCGAAGACAAATCCAA+AGG - chr5_3:55145770-55145789 Msa0819060:three_prime_UTR 30.0%
TCTAATAAGCCAATCCAAAT+AGG + chr5_3:55146071-55146090 None:intergenic 30.0%
CACTTCAAAAATGACAAAAG+TGG + chr5_3:55146244-55146263 None:intergenic 30.0%
ACTAATGGGAATAAGATCAA+GGG + chr5_3:55146473-55146492 None:intergenic 30.0%
AACTAATGGGAATAAGATCA+AGG + chr5_3:55146474-55146493 None:intergenic 30.0%
AGCTATCTTAGAGAACTAAT+GGG + chr5_3:55146487-55146506 None:intergenic 30.0%
AAGCTATCTTAGAGAACTAA+TGG + chr5_3:55146488-55146507 None:intergenic 30.0%
ACATAAACTTGTACGAGAAA+TGG - chr5_3:55146666-55146685 Msa0819060:CDS 30.0%
!!! TTCACTTTTTCATTGATCCT+TGG - chr5_3:55146802-55146821 Msa0819060:intron 30.0%
!! TGTTTCTTTAGAGTAGATGA+AGG + chr5_3:55146952-55146971 None:intergenic 30.0%
CGCCAATGAAAATATTCATA+AGG - chr5_3:55147008-55147027 Msa0819060:intron 30.0%
GTTTGCGATGAAAAGAAAAA+AGG + chr5_3:55147123-55147142 None:intergenic 30.0%
TAAAATGGAAGAAGAAACAC+TGG + chr5_3:55147393-55147412 None:intergenic 30.0%
AATGTGCAGCAACAATAAAA+TGG + chr5_3:55147408-55147427 None:intergenic 30.0%
!!! ATTCAGTAACCTTGCTTTTT+TGG - chr5_3:55147885-55147904 Msa0819060:CDS 30.0%
! AAGGCTAAGTTAAGCTTTTT+AGG - chr5_3:55148165-55148184 Msa0819060:intron 30.0%
!!! TTATTTTAGTAGAGAGAGAG+AGG + chr5_3:55148567-55148586 None:intergenic 30.0%
!! AGATGATTTTTAAGCATCTC+TGG - chr5_3:55148588-55148607 Msa0819060:CDS 30.0%
CCATTAATACAAGTACGATA+AGG + chr5_3:55148773-55148792 None:intergenic 30.0%
CCTTATCGTACTTGTATTAA+TGG - chr5_3:55148770-55148789 Msa0819060:intron 30.0%
ACCAATTCCATTATTGTAAC+AGG - chr5_3:55148861-55148880 Msa0819060:intron 30.0%
! ACCTGTTACAATAATGGAAT+TGG + chr5_3:55148865-55148884 None:intergenic 30.0%
TCGCTTAATAAAACTTGAAC+AGG + chr5_3:55148899-55148918 None:intergenic 30.0%
! TTTATACCGATCCTTTAGAA+GGG + chr5_3:55149081-55149100 None:intergenic 30.0%
! TTTTATACCGATCCTTTAGA+AGG + chr5_3:55149082-55149101 None:intergenic 30.0%
! TATAAAAGCATAGAGAAGAG+AGG - chr5_3:55149095-55149114 Msa0819060:intron 30.0%
! ATAAAAGCATAGAGAAGAGA+GGG - chr5_3:55149096-55149115 Msa0819060:intron 30.0%
TATTTATGCCTGCAATAAGT+TGG - chr5_3:55149269-55149288 Msa0819060:intron 30.0%
GGTGTTTAAATGGTTAAGTA+TGG - chr5_3:55149397-55149416 Msa0819060:intron 30.0%
! TGCAAAAAGTTATGGTGTTT+TGG + chr5_3:55149516-55149535 None:intergenic 30.0%
TTTCTGTCTGCAAAAAGTTA+TGG + chr5_3:55149524-55149543 None:intergenic 30.0%
GACTCATGAAGTGAAAAAAT+AGG + chr5_3:55149553-55149572 None:intergenic 30.0%
TTAAGTTAGGGAAGAAAACA+AGG + chr5_3:55149723-55149742 None:intergenic 30.0%
GAAATGATTAACAAAGATCC+TGG - chr5_3:55149936-55149955 Msa0819060:CDS 30.0%
AAGTGTAGTGTACGAAAATG+GGG - chr5_3:55145606-55145625 Msa0819060:intron 35.0%
AAATCGAAGAGTTCAAGGAA+AGG - chr5_3:55145632-55145651 Msa0819060:intron 35.0%
AATCGAAGAGTTCAAGGAAA+GGG - chr5_3:55145633-55145652 Msa0819060:intron 35.0%
TCAACAAAAGATGCTCTTTC+TGG - chr5_3:55145713-55145732 Msa0819060:three_prime_UTR 35.0%
TTCGAAAAAGAGAGAATCAC+TGG + chr5_3:55145759-55145778 None:intergenic 35.0%
AATGGGTACATACATACCTT+TGG + chr5_3:55145789-55145808 None:intergenic 35.0%
ACTTACACATAGAGCCTATT+TGG - chr5_3:55146054-55146073 Msa0819060:intron 35.0%
TAAGTACCTGTGAGATTGAT+TGG - chr5_3:55146106-55146125 Msa0819060:intron 35.0%
AAGTACCTGTGAGATTGATT+GGG - chr5_3:55146107-55146126 Msa0819060:intron 35.0%
ATCCAAACTGTCTCATTATG+TGG - chr5_3:55146605-55146624 Msa0819060:intron 35.0%
TACCACATAATGAGACAGTT+TGG + chr5_3:55146610-55146629 None:intergenic 35.0%
!! TTATCTGCGTTTCTAGTATG+TGG - chr5_3:55146728-55146747 Msa0819060:intron 35.0%
!! CTAGTATGTGGTTGATTTGT+TGG - chr5_3:55146740-55146759 Msa0819060:intron 35.0%
!! TTGGTTGTAGAGTACTGTAT+TGG - chr5_3:55146759-55146778 Msa0819060:intron 35.0%
TAAAGAAACACGCGAAAAAC+CGG - chr5_3:55146962-55146981 Msa0819060:CDS 35.0%
! TTCATTGGCGACTAAACTTT+TGG + chr5_3:55146998-55147017 None:intergenic 35.0%
! TGGCAAACATACTTGGATTT+TGG - chr5_3:55147078-55147097 Msa0819060:CDS 35.0%
! TACTTGGATTTTGGACAGAA+TGG - chr5_3:55147087-55147106 Msa0819060:CDS 35.0%
! ACTTGGATTTTGGACAGAAT+GGG - chr5_3:55147088-55147107 Msa0819060:CDS 35.0%
AAAGACGTCAGAATCTAACA+CGG + chr5_3:55147203-55147222 None:intergenic 35.0%
ATTCTGACGTCTTTGATATG+TGG - chr5_3:55147209-55147228 Msa0819060:intron 35.0%
TTCTGACGTCTTTGATATGT+GGG - chr5_3:55147210-55147229 Msa0819060:intron 35.0%
TTTGATATGTGGGGTGATAA+AGG - chr5_3:55147220-55147239 Msa0819060:intron 35.0%
AGGCAACAAGAAAGTGAAAA+AGG - chr5_3:55147340-55147359 Msa0819060:intron 35.0%
! GAAAGTCATCAGGTAGTTTT+TGG - chr5_3:55147544-55147563 Msa0819060:intron 35.0%
TATCGAGAGCTTCGTAAATA+TGG + chr5_3:55147829-55147848 None:intergenic 35.0%
CCACATCAAGAAAATACATC+TGG + chr5_3:55147911-55147930 None:intergenic 35.0%
! CCAGATGTATTTTCTTGATG+TGG - chr5_3:55147908-55147927 Msa0819060:CDS 35.0%
GAAAGTAATCACGAAGATGA+TGG - chr5_3:55147948-55147967 Msa0819060:intron 35.0%
!! ACCTGATTGGTAATGTAAAC+CGG + chr5_3:55148058-55148077 None:intergenic 35.0%
TTATACATGAAAGCTTGAGC+AGG + chr5_3:55148106-55148125 None:intergenic 35.0%
!! TGCATGTTGATAGCTAATGA+AGG - chr5_3:55148146-55148165 Msa0819060:intron 35.0%
! TAAATTTTATGGAGACCACG+TGG - chr5_3:55148192-55148211 Msa0819060:intron 35.0%
TGTTTGAATCACTATTGGAC+AGG - chr5_3:55148392-55148411 Msa0819060:CDS 35.0%
!!! TTAAGCATCTCTGGTTCTTT+TGG - chr5_3:55148597-55148616 Msa0819060:CDS 35.0%
GGAAATTAAGCATGAAGATG+AGG - chr5_3:55148644-55148663 Msa0819060:CDS 35.0%
AAAAATCGAGAAGACATCTG+AGG - chr5_3:55148667-55148686 Msa0819060:CDS 35.0%
TGCTAAACAAGAGAGGTTAA+AGG - chr5_3:55148698-55148717 Msa0819060:CDS 35.0%
GCTGAAACCTGTTACAATAA+TGG + chr5_3:55148871-55148890 None:intergenic 35.0%
AATAAAACTTGAACAGGAGC+AGG + chr5_3:55148893-55148912 None:intergenic 35.0%
ACAAGTCTACCTTAAGCTTT+CGG + chr5_3:55148940-55148959 None:intergenic 35.0%
ATCTCAAACAGATTTGGAGA+CGG - chr5_3:55149207-55149226 Msa0819060:intron 35.0%
!!! ATGGTGTTTTGGTTTCCAAA+AGG + chr5_3:55149505-55149524 None:intergenic 35.0%
!! AGGATAGTACATTTTTGAGC+AGG - chr5_3:55149589-55149608 Msa0819060:intron 35.0%
CAACATGGAAGGAAATAAGT+TGG + chr5_3:55149620-55149639 None:intergenic 35.0%
TCTTCTTGCCATATATCATG+CGG + chr5_3:55149752-55149771 None:intergenic 35.0%
! AACAAAGATCCTGGAGTATT+TGG - chr5_3:55149945-55149964 Msa0819060:CDS 35.0%
GGAAGAAATCGAAGAGTTCA+AGG - chr5_3:55145627-55145646 Msa0819060:intron 40.0%
ACAAAAGATGCTCTTTCTGG+TGG - chr5_3:55145716-55145735 Msa0819060:three_prime_UTR 40.0%
CACATAGAGCCTATTTGGAT+TGG - chr5_3:55146059-55146078 Msa0819060:intron 40.0%
ATTCTCCCAATCAATCTCAC+AGG + chr5_3:55146115-55146134 None:intergenic 40.0%
TTTGATGTGGCTAGATCTTG+CGG - chr5_3:55146843-55146862 Msa0819060:intron 40.0%
! TTTAGAGTAGATGAAGGCAC+TGG + chr5_3:55146946-55146965 None:intergenic 40.0%
! AACTTTTGGACAGCACTTTC+CGG + chr5_3:55146984-55147003 None:intergenic 40.0%
TGCTTAGTGGCAAACATACT+TGG - chr5_3:55147071-55147090 Msa0819060:intron 40.0%
! CTTGGATTTTGGACAGAATG+GGG - chr5_3:55147089-55147108 Msa0819060:CDS 40.0%
! TTGGATTTTGGACAGAATGG+GGG - chr5_3:55147090-55147109 Msa0819060:CDS 40.0%
TCTGACGTCTTTGATATGTG+GGG - chr5_3:55147211-55147230 Msa0819060:intron 40.0%
AGGTACACGTTATTGCATAG+CGG - chr5_3:55147360-55147379 Msa0819060:intron 40.0%
ACCTGATGACTTTCATGTGT+GGG + chr5_3:55147538-55147557 None:intergenic 40.0%
TACCTGATGACTTTCATGTG+TGG + chr5_3:55147539-55147558 None:intergenic 40.0%
AACAACATCTCTAACAGCAG+AGG + chr5_3:55147584-55147603 None:intergenic 40.0%
TACATTAGCTACTGCTGTTG+CGG - chr5_3:55147656-55147675 Msa0819060:CDS 40.0%
AGCAAGGTTACTGAATTAGC+AGG + chr5_3:55147881-55147900 None:intergenic 40.0%
TACATCTGGCCAAAAAAGCA+AGG + chr5_3:55147897-55147916 None:intergenic 40.0%
CAGCATCTCAAAAATTGCTG+AGG - chr5_3:55148623-55148642 Msa0819060:CDS 40.0%
GACAAGTTGCTAAACAAGAG+AGG - chr5_3:55148691-55148710 Msa0819060:CDS 40.0%
! TAAACCAACCTGTTTCTCCT+CGG + chr5_3:55149137-55149156 None:intergenic 40.0%
CTGGTAAAACAAGCAGAAGA+CGG + chr5_3:55149297-55149316 None:intergenic 40.0%
ACAGGTAAACCAAATACTCC+AGG + chr5_3:55149957-55149976 None:intergenic 40.0%
CAAGGAAAGGGAAGAAAGCA+TGG - chr5_3:55145645-55145664 Msa0819060:intron 45.0%
!! AAGGCACTGGCTTAACAAAC+TGG + chr5_3:55146933-55146952 None:intergenic 45.0%
TCGACAGCTGGAATATGAGT+AGG + chr5_3:55147487-55147506 None:intergenic 45.0%
TACTCATATTCCAGCTGTCG+AGG - chr5_3:55147486-55147505 Msa0819060:intron 45.0%
GGATTAAATGAGCATCCTGG+AGG + chr5_3:55147517-55147536 None:intergenic 45.0%
GTGGGATTAAATGAGCATCC+TGG + chr5_3:55147520-55147539 None:intergenic 45.0%
TCCCACACATGAAAGTCATC+AGG - chr5_3:55147534-55147553 Msa0819060:intron 45.0%
CAGCAGTAGCTAATGTATCC+TGG + chr5_3:55147653-55147672 None:intergenic 45.0%
AAATGAATTGGGCCCTGAAC+TGG - chr5_3:55147701-55147720 Msa0819060:intron 45.0%
!! CAGTTAAAGGCACCAGTTCA+GGG + chr5_3:55147716-55147735 None:intergenic 45.0%
!! ACAGTTAAAGGCACCAGTTC+AGG + chr5_3:55147717-55147736 None:intergenic 45.0%
TCTCCAGCAGGAACAGTTAA+AGG + chr5_3:55147729-55147748 None:intergenic 45.0%
TCAGAAATAGCTTCTCCAGC+AGG + chr5_3:55147741-55147760 None:intergenic 45.0%
! GCCGGTTTACATTACCAATC+AGG - chr5_3:55148054-55148073 Msa0819060:intron 45.0%
AAGCTTGAGCAGGAAGGAAA+TGG + chr5_3:55148096-55148115 None:intergenic 45.0%
ACATGAAAGCTTGAGCAGGA+AGG + chr5_3:55148102-55148121 None:intergenic 45.0%
AAAAAAGAATACCGGCCACG+TGG + chr5_3:55148210-55148229 None:intergenic 45.0%
TAGTAGAGAGAGAGAGGTGA+GGG + chr5_3:55148561-55148580 None:intergenic 45.0%
TTAGTAGAGAGAGAGAGGTG+AGG + chr5_3:55148562-55148581 None:intergenic 45.0%
TACTTGTGCTTTCCTAAGCG+AGG + chr5_3:55148732-55148751 None:intergenic 45.0%
TGGATCCATCCGAAAGCTTA+AGG - chr5_3:55148928-55148947 Msa0819060:intron 45.0%
GTCTACCTTAAGCTTTCGGA+TGG + chr5_3:55148936-55148955 None:intergenic 45.0%
! GTTGCACCCTTCTAAAGGAT+CGG - chr5_3:55149072-55149091 Msa0819060:intron 45.0%
AAGCATAGAGAAGAGAGGGT+TGG - chr5_3:55149100-55149119 Msa0819060:intron 45.0%
CAAACAGATTTGGAGACGGT+TGG - chr5_3:55149211-55149230 Msa0819060:intron 45.0%
!!! CGTCTTCTGCTTGTTTTACC+AGG - chr5_3:55149295-55149314 Msa0819060:intron 45.0%
!! TTGTTTTACCAGGTGCTTCG+TGG - chr5_3:55149305-55149324 Msa0819060:intron 45.0%
TGGCACAAGGTTTAAGTGTG+TGG - chr5_3:55149325-55149344 Msa0819060:intron 45.0%
ATGCGGAGCGACTTAAGTTA+GGG + chr5_3:55149735-55149754 None:intergenic 45.0%
AAGTCGCTCCGCATGATATA+TGG - chr5_3:55149741-55149760 Msa0819060:intron 45.0%
!! CAAAATAAATAAATAAAAAT+GGG + chr5_3:55145806-55145825 None:intergenic 5.0%
TGTCATGCAGACGCAGATGA+AGG - chr5_3:55147320-55147339 Msa0819060:intron 50.0%
GTGCCTTTAACTGTTCCTGC+TGG - chr5_3:55147723-55147742 Msa0819060:intron 50.0%
! TTTTATGGAGACCACGTGGC+CGG - chr5_3:55148196-55148215 Msa0819060:intron 50.0%
TTGTGCTTTCCTAAGCGAGG+AGG + chr5_3:55148729-55148748 None:intergenic 50.0%
GGGTTGTTGCACCCTTCTAA+AGG - chr5_3:55149067-55149086 Msa0819060:intron 50.0%
TTCCAAAGCCGAGGAGAAAC+AGG - chr5_3:55149126-55149145 Msa0819060:intron 50.0%
! AACCTGTTTCTCCTCGGCTT+TGG + chr5_3:55149131-55149150 None:intergenic 50.0%
AAAGCCGAGGAGAAACAGGT+TGG - chr5_3:55149130-55149149 Msa0819060:intron 50.0%
AGACGGCACCAACTTATTGC+AGG + chr5_3:55149280-55149299 None:intergenic 50.0%
CATGCGGAGCGACTTAAGTT+AGG + chr5_3:55149736-55149755 None:intergenic 50.0%
TGGTTTACCTGTGCACTTCG+AGG - chr5_3:55149965-55149984 Msa0819060:CDS 50.0%
GGTTTACCTGTGCACTTCGA+GGG - chr5_3:55149966-55149985 Msa0819060:CDS 50.0%
TTCTTACCCTCGAAGTGCAC+AGG + chr5_3:55149975-55149994 None:intergenic 50.0%
GGTGAGGGAGGATGAGAGAA+TGG + chr5_3:55148546-55148565 None:intergenic 55.0%
TAGAGAGAGAGAGGTGAGGG+AGG + chr5_3:55148558-55148577 None:intergenic 55.0%
AAGGCATGTCCTCCTCGCTT+AGG - chr5_3:55148717-55148736 Msa0819060:CDS 55.0%
! GGTTGGTTGTTCCAAAGCCG+AGG - chr5_3:55149117-55149136 Msa0819060:intron 55.0%
GGAGGATCAACCTCGACAGC+TGG + chr5_3:55147499-55147518 None:intergenic 60.0%
! GCTGTCGAGGTTGATCCTCC+AGG - chr5_3:55147499-55147518 Msa0819060:intron 60.0%
ACCAGGTGCTTCGTGGCACA+AGG - chr5_3:55149312-55149331 Msa0819060:intron 60.0%
! ACCTTGTGCCACGAAGCACC+TGG + chr5_3:55149316-55149335 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 55145564 55150047 55145564 ID=Msa0819060;Name=Msa0819060
chr5_3 mRNA 55145564 55150047 55145564 ID=Msa0819060-mRNA-1;Parent=Msa0819060;Name=Msa0819060-mRNA-1;_AED=0.07;_eAED=0.07;_QI=59|1|1|1|0.91|0.84|13|295|366
chr5_3 exon 55145564 55145609 55145564 ID=Msa0819060-mRNA-1:exon:16739;Parent=Msa0819060-mRNA-1
chr5_3 exon 55145652 55145904 55145652 ID=Msa0819060-mRNA-1:exon:16738;Parent=Msa0819060-mRNA-1
chr5_3 exon 55146464 55146543 55146464 ID=Msa0819060-mRNA-1:exon:16737;Parent=Msa0819060-mRNA-1
chr5_3 exon 55146662 55146728 55146662 ID=Msa0819060-mRNA-1:exon:16736;Parent=Msa0819060-mRNA-1
chr5_3 exon 55146863 55146985 55146863 ID=Msa0819060-mRNA-1:exon:16735;Parent=Msa0819060-mRNA-1
chr5_3 exon 55147078 55147197 55147078 ID=Msa0819060-mRNA-1:exon:16734;Parent=Msa0819060-mRNA-1
chr5_3 exon 55147611 55147699 55147611 ID=Msa0819060-mRNA-1:exon:16733;Parent=Msa0819060-mRNA-1
chr5_3 exon 55147844 55147957 55147844 ID=Msa0819060-mRNA-1:exon:16732;Parent=Msa0819060-mRNA-1
chr5_3 exon 55148056 55148136 55148056 ID=Msa0819060-mRNA-1:exon:16731;Parent=Msa0819060-mRNA-1
chr5_3 exon 55148250 55148281 55148250 ID=Msa0819060-mRNA-1:exon:16730;Parent=Msa0819060-mRNA-1
chr5_3 exon 55148370 55148418 55148370 ID=Msa0819060-mRNA-1:exon:16729;Parent=Msa0819060-mRNA-1
chr5_3 exon 55148582 55148754 55148582 ID=Msa0819060-mRNA-1:exon:16728;Parent=Msa0819060-mRNA-1
chr5_3 exon 55149820 55150047 55149820 ID=Msa0819060-mRNA-1:exon:16727;Parent=Msa0819060-mRNA-1
chr5_3 five_prime_UTR 55149989 55150047 55149989 ID=Msa0819060-mRNA-1:five_prime_utr;Parent=Msa0819060-mRNA-1
chr5_3 CDS 55149820 55149988 55149820 ID=Msa0819060-mRNA-1:cds;Parent=Msa0819060-mRNA-1
chr5_3 CDS 55148582 55148754 55148582 ID=Msa0819060-mRNA-1:cds;Parent=Msa0819060-mRNA-1
chr5_3 CDS 55148370 55148418 55148370 ID=Msa0819060-mRNA-1:cds;Parent=Msa0819060-mRNA-1
chr5_3 CDS 55148250 55148281 55148250 ID=Msa0819060-mRNA-1:cds;Parent=Msa0819060-mRNA-1
chr5_3 CDS 55148056 55148136 55148056 ID=Msa0819060-mRNA-1:cds;Parent=Msa0819060-mRNA-1
chr5_3 CDS 55147844 55147957 55147844 ID=Msa0819060-mRNA-1:cds;Parent=Msa0819060-mRNA-1
chr5_3 CDS 55147611 55147699 55147611 ID=Msa0819060-mRNA-1:cds;Parent=Msa0819060-mRNA-1
chr5_3 CDS 55147078 55147197 55147078 ID=Msa0819060-mRNA-1:cds;Parent=Msa0819060-mRNA-1
chr5_3 CDS 55146863 55146985 55146863 ID=Msa0819060-mRNA-1:cds;Parent=Msa0819060-mRNA-1
chr5_3 CDS 55146662 55146728 55146662 ID=Msa0819060-mRNA-1:cds;Parent=Msa0819060-mRNA-1
chr5_3 CDS 55146464 55146543 55146464 ID=Msa0819060-mRNA-1:cds;Parent=Msa0819060-mRNA-1
chr5_3 CDS 55145901 55145904 55145901 ID=Msa0819060-mRNA-1:cds;Parent=Msa0819060-mRNA-1
chr5_3 three_prime_UTR 55145652 55145900 55145652 ID=Msa0819060-mRNA-1:three_prime_utr;Parent=Msa0819060-mRNA-1
chr5_3 three_prime_UTR 55145564 55145609 55145564 ID=Msa0819060-mRNA-1:three_prime_utr;Parent=Msa0819060-mRNA-1
Gene Sequence

>Msa0819060

ATGGGGAAGAAATCGAAGAGTTCAAGGAAAGGGAAGAAAGCATGGAGAGCTAACATAAGCACAGAAGAAATCGAAGATTTCTTTGAGAAATCAACAAAAGATGCTCTTTCTGGTGGTTCTCTTCAAGCTGTTTCCAGTGATTCTCTCTTTTTCGAAGACAAATCCAAAGATCTTGCGGTAAAGAAGAAGATCGAAAAACATAGAGAAAAAGTGCTTCATGTTGATAGCATACTACAAAAAAACCAGTTTGTTAAGCCAGTGCCTTCATCTACTCTAAAGAAACACGCGAAAAACCGGAAAGTGCTGTCCAAAAGTTTAGTCGCCAATGAAAATATTCATAAGGAGGGTTCCGTGTTAGATTCTGACGTCTTTGATATGTGGGGTGATAAAGACGCAGATGAAGGCAACAAGAAAGTGAAAAAGTTGTGCAAGCCTACTCATATTCCAGCTGTCGAGGTTGATCCTCCAGGATGCTCATTTAATCCCACACATGAAAGTCATCAGGATACATTAGCTACTGCTGTTGCGGAAGAAATGATTAAAGTCTACAGAAATGAATTGGGCCCTGAACTGGTGCCTTTAACTGTTCCTGCTGGAGAAGCTATTTCTGAAGAAGATATGTATTTTCTTGATGTGGAGAAGAGTGACGATGATGAAAGTAATCACGAAGATGATGGTGAAAATGAAGATGATGCGTCAGAGAAAAAGCCCATTAAAACAAAGAAAGTGACTAGAGTTGAGTTGAATAAGAGAATTCGGCGCAGAGAACAATTGAAAAAAGAAGCCGAATCAAAGAAGAAGAAGAATTTCTCAAAAGAAATTGATAGCATCTCAAAAATTGCTGAGGAAATTAAGCATGAAGATGAGGAAAAATCGAGAAGACATCTGAGGCGACAAGTTGCTAAACAAGAGAGGTTAAAGGCATGTCCTCCTCGCTTAGGAAAGCACAAGTTTCAGCCTGCTCCTGTTCAAGTTTTATTAAGCGAAGAGATAAATGGATCCATCCGAAAGCTTAAGGGTTGTTGCACCCTTCTAAAGGATCGGTATAAAAGCATAGAGAAGAGAGGGTTGGTTGTTCCAAAGCCGAGGAGAAACAGGTAG

Protein sequence

>Msa0819060

MGKKSKSSRKGKKAWRANISTEEIEDFFEKSTKDALSGGSLQAVSSDSLFFEDKSKDLAVKKKIEKHREKVLHVDSILQKNQFVKPVPSSTLKKHAKNRKVLSKSLVANENIHKEGSVLDSDVFDMWGDKDADEGNKKVKKLCKPTHIPAVEVDPPGCSFNPTHESHQDTLATAVAEEMIKVYRNELGPELVPLTVPAGEAISEEDMYFLDVEKSDDDESNHEDDGENEDDASEKKPIKTKKVTRVELNKRIRRREQLKKEAESKKKKNFSKEIDSISKIAEEIKHEDEEKSRRHLRRQVAKQERLKACPPRLGKHKFQPAPVQVLLSEEINGSIRKLKGCCTLLKDRYKSIEKRGLVVPKPRRNR*